Citrus Sinensis ID: 004324
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 761 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XIL5 | 849 | Pentatricopeptide repeat- | yes | no | 0.940 | 0.843 | 0.582 | 0.0 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.455 | 0.240 | 0.227 | 2e-14 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.344 | 0.431 | 0.254 | 2e-13 | |
| Q0WPZ6 | 874 | Pentatricopeptide repeat- | no | no | 0.424 | 0.369 | 0.225 | 3e-13 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.516 | 0.496 | 0.228 | 1e-11 | |
| P0C043 | 463 | Putative pentatricopeptid | no | no | 0.521 | 0.857 | 0.221 | 3e-11 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.446 | 0.357 | 0.220 | 3e-11 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.434 | 0.640 | 0.245 | 2e-10 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.415 | 0.478 | 0.225 | 2e-10 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.353 | 0.312 | 0.216 | 2e-10 |
| >sp|Q9XIL5|PP154_ARATH Pentatricopeptide repeat-containing protein At2g15820 OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/773 (58%), Positives = 580/773 (75%), Gaps = 57/773 (7%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S + +E+
Sbjct: 91 FFSHSST-RTPP----LFTANSTAQRSGTFVEHLTGITESEE---------GISEANGFG 136
Query: 82 FDVGTAGSEMRHLG----EPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNA 137
DV +A +++R++ E EV ELEELPE+WRR+KLAWLCKE+P+HK TLVR+LNA
Sbjct: 137 -DVESARNDIRNVATRRIETEFEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNA 195
Query: 138 QKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFA 197
QKKW+RQED TY++VHCMRIRENETGFRVY WM QQ+WYRFDF L TKLA+Y+GKERKF
Sbjct: 196 QKKWVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFT 255
Query: 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSL 256
KCR++FDD++NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR SL
Sbjct: 256 KCREVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSL 315
Query: 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERI 316
HNSLFRALVSK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS QD +D RI
Sbjct: 316 HNSLFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRI 375
Query: 317 SLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376
+ L++EM++AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYK+EA
Sbjct: 376 NSLREEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEA 435
Query: 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436
Y+K+G+F K++EIFREM++ +G A++ YHKIIE+LCK ++ EL E+LMKEF E+G KPL
Sbjct: 436 YSKVGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPL 495
Query: 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+PS+I + MY +LG+H++L +AF +CLEKC+P++ IY IYL+SL GN+EKA ++FN
Sbjct: 496 LPSFIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNE 555
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556
M ++ TI V+ RSCN +L YL G V+AE+IYDLM +KKYEIE MEKLDY+LSL +
Sbjct: 556 MKNNGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKK 615
Query: 557 KEVKK-PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLY 615
KEVKK P S+ LS +QRE L+GLLLGGL IESD+++K HMI+F+F ENS+ H VL++ ++
Sbjct: 616 KEVKKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIH 675
Query: 616 DQYHEWLHP---------SFKF---------------WPKGRLVIPKLIHRWLTPRALAY 651
DQ+ EWLHP F+F WPKG+ IPKLIHRWL+P +LAY
Sbjct: 676 DQFREWLHPLSNFQEDIIPFEFYSVPHSYFGFYAEHYWPKGQPEIPKLIHRWLSPHSLAY 735
Query: 652 WFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLF 711
W+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG+VFWIG G+NS LF
Sbjct: 736 WYMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECRVKKKGKVFWIGLQGTNSALF 795
Query: 712 WKLIEPYVLDELKEDLLNEGSE----YRKLDTQNINFDCGSDSDEKASDYSDD 760
WKLIEP+VL+ LKE L SE ++ + Q+INF SD+SDD
Sbjct: 796 WKLIEPHVLENLKEH-LKPASESLDNVKEAEEQSINFKSN-------SDHSDD 840
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 172/370 (46%), Gaps = 23/370 (6%)
Query: 178 FDFALA---TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234
F FA + T + + GK++ + K + ++ GR P T++ L+ AY GC
Sbjct: 747 FHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC---GCY 803
Query: 235 DEACSIYNRMIQLGGYQPRPSLH--NSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE 292
+ A +I+N M++ G P P++ N L AL G L + Y+ + L G +
Sbjct: 804 ERARAIFNTMMRDG---PSPTVESINILLHALCVD-GRLEELYV-----VVEELQDMGFK 854
Query: 293 IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352
I K S L+ L ++ + + + M+ AG+ + ++ + K V DAE
Sbjct: 855 ISKS--SILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412
+ E++ + + ++ Y I ++ K++++++ ++E Y+ +I +
Sbjct: 913 IMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972
Query: 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNR 471
C+ E LM++ G+ P + +Y +L + + ++ F E L K + +R
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDR 1032
Query: 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531
+ Y ++ +++G+ KAE++ M + I + ++++ +Y SSG+ +AEK+
Sbjct: 1033 SFYHTMMKISRDSGSDSKAEKLL-QMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV-- 1089
Query: 532 LMCLKKYEIE 541
L LK E+E
Sbjct: 1090 LSNLKDTEVE 1099
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 13/275 (4%)
Query: 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220
+ GFR+ + M++ R D + L + + KE K +FD++ +G +P+++ F
Sbjct: 292 DEGFRL-KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350
Query: 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAE 280
LI + G +D Y +M+ G QP L+N+L K G L A
Sbjct: 351 LIHGHSR---NGEIDLMKESYQKMLS-KGLQPDIVLYNTLVNGFC-KNGDLV-----AAR 400
Query: 281 FIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLR 340
I ++ GL K Y+ LI + D E ++KEM Q G E + +++
Sbjct: 401 NIVDGMIRRGLRPDKITYTTLI--DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVC 458
Query: 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400
KEG V DAE+ +L + + M+A+ K G+ ++ +EMQ
Sbjct: 459 GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVP 518
Query: 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
SV Y+ ++ LCK + + + L+ + G+ P
Sbjct: 519 SVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 14/337 (4%)
Query: 200 RDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259
R++FD++ +G P+E TF IL+ Y A G D+ + N M G P ++N+
Sbjct: 167 RELFDEMPEKGCKPNEFTFGILVRGYCKA---GLTDKGLELLNAMESFG-VLPNKVIYNT 222
Query: 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI-DKERISL 318
+ + + +E + + GL ++ I + + D RI
Sbjct: 223 IVSSFCREGRN------DDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFS 276
Query: 319 LKKEMQQAGFEEGKEVLLSV-LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377
+ + G + ++ L+ K G +EDA+ + + E+D+ ++ ++
Sbjct: 277 DMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Query: 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437
+ G+F+++ + ++M ++ S+ +Y+ +++ LCK ++++ G+ P
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDA 396
Query: 438 PSYINLTNMYLNLGMHDRLHLAFSECL-EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+Y L + Y ++G D E + C PN I L SL G I +AEE+
Sbjct: 397 VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRK 456
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
M+ ++ G++T +CNII+ SG+ KA +I M
Sbjct: 457 MN-EKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/421 (22%), Positives = 171/421 (40%), Gaps = 28/421 (6%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
M+ D + L DY+ K + + R IFD + +G P T+ L+ Y +
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT--- 348
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
+G L E + + M++ G P + +F L+ K + QA +F + G
Sbjct: 349 KGALVEMHGLLDLMVR-NGIHP----DHYVFSILICAYAKQGK--VDQAMLVFSKMRQQG 401
Query: 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350
L Y +I + + E L ++M G G V S++ E
Sbjct: 402 LNPNAVTYGAVIGILCKSGRV--EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKII 409
AE+ L +L+ + T F ++++ K G ++S ++F E+ R+G +V Y+ +I
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF-ELMVRIGVKPNVITYNTLI 518
Query: 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCR 468
C A + + L+ V G+KP +Y L N Y + M D L L
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVS 578
Query: 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528
P+ Y I L+ L A+E++ + T + + NIIL + A +
Sbjct: 579 PDIITYNIILQGLFQTRRTAAAKELYVRITESGT-QIELSTYNIILHGLCKNKLTDDALQ 637
Query: 529 IYDLMCLKKYEIES-AWMEKLDYVLSLNRKEVKKPVSLNLSSE-----------QRENLI 576
++ +CL ++E+ + +D +L + R + K + + SS EN+I
Sbjct: 638 MFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII 697
Query: 577 G 577
G
Sbjct: 698 G 698
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 179/464 (38%), Gaps = 67/464 (14%)
Query: 181 ALATKL----ADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
L+T+L D + K RK K + D I G P +T++ LI Y ++E
Sbjct: 10 GLSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVG---IEE 66
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296
A ++ RM + G +P + +NSL G + L ++F +L G+
Sbjct: 67 AYAVTRRM-RDAGIRPDVATYNSLI------AGAARRLMLDHVLYLFDEMLEWGIYPDLW 119
Query: 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA----- 351
Y+ L+ + ++ +E +L K++Q AG G + +L K G +++A
Sbjct: 120 SYNTLMCCY-FKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFK 178
Query: 352 ---------------------------EKTWLRLLESDNGIPTPAFVYK--MEAYAKIGE 382
W+ +G A Y ++ Y K
Sbjct: 179 EMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRR 238
Query: 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442
+ L++F EM+ + AY ++ L K T+ M+E V G + + SY
Sbjct: 239 IRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNT 298
Query: 443 LTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501
L N+Y G D + E + + + + I + L G +AEE F M +
Sbjct: 299 LLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSM-GEM 357
Query: 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL----------DYV 551
IG+N +CN ++ +G +A + ++ M +K ++ + L +
Sbjct: 358 GIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKDMRFVCASKLL 417
Query: 552 LSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595
LS K +K P +S +R L GL + G C K K M
Sbjct: 418 LSCYNKGIKIP-----TSARRAVLSGLRMSG-CYGEARKAKAEM 455
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 23/363 (6%)
Query: 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
R +F L K + G+ + R+ F+ + +G P+ + LI AY V +DE
Sbjct: 309 RTEFGLMVK---FYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAY---AVGRDMDE 362
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSL--FRALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEI 293
A S +M + G + SL + +V GG SK + + A++ F +
Sbjct: 363 ALSCVRKMKEEG-------IEMSLVTYSVIV---GGFSKAGHAEAADYWFDEAKRIHKTL 412
Query: 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353
IY +I+ H N+ ER L +EM++ G + + +++ D +
Sbjct: 413 NASIYGKIIYAHCQTCNM--ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLV 470
Query: 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413
+ RL E + + Y K+G+ K+LE+ R M+E ++ Y +I
Sbjct: 471 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFV 530
Query: 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRT 472
K ++ ++ ++ V+ GMKP + Y N+ + + +G DR E + + RP
Sbjct: 531 KLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTR 590
Query: 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532
+ + +G++ ++ E+F+ M + + N +++ + KA +I D
Sbjct: 591 TFMPIIHGYAKSGDMRRSLEVFDMMRRCGCV-PTVHTFNGLINGLVEKRQMEKAVEILDE 649
Query: 533 MCL 535
M L
Sbjct: 650 MTL 652
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 147/350 (42%), Gaps = 19/350 (5%)
Query: 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL 247
D + +E K F ++ +GR P +++ ILI A G + +A I+N MI+
Sbjct: 122 DLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRA---GKVTDAVEIWNAMIRS 178
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
G S N ALV K L E + + ++ +++ +Y+ LI
Sbjct: 179 G-----VSPDNKACAALVVGLCHARKVDLAY-EMVAEEIKSARVKLSTVVYNALISGFCK 232
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
I E+ LK M + G E +L ++ AE ++ S GI
Sbjct: 233 AGRI--EKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRS--GIQL 288
Query: 368 PAFVYK--MEAYAKIGEFMKSLE-IFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424
A+ Y ++ + ++ K + +EM+ R G V +Y +IE C+A T L
Sbjct: 289 DAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPR-GFCDVVSYSTLIETFCRASNTRKAYRL 347
Query: 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKN 483
+E + GM + +Y +L +L G + E P+R Y L+ L
Sbjct: 348 FEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCK 407
Query: 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+GN++KA +FN M + I + S N ++S SG +A K+++ M
Sbjct: 408 SGNVDKAYGVFNDM-IEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDM 456
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 21/337 (6%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245
L D + K+ + + D++ +G VP+E+T++ LI ++G LD+A S+ RM+
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC---LKGKLDKAVSLLERMV 319
Query: 246 QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305
P + +L LV + A + ++ G + + IYS LI
Sbjct: 320 S-SKCIPNDVTYGTLINGLVKQRRA------TDAVRLLSSMEERGYHLNQHIYSVLIS-G 371
Query: 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI 365
+++ +E +SL +K M + G + V ++ +EG +A++ R++ S G
Sbjct: 372 LFKEGKAEEAMSLWRK-MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS--GC 428
Query: 366 PTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423
A+ Y M+ + K G +++++++EM + S + Y +I+ LC +
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMM 488
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL----EKCRPNRTIYGIYLE 479
+ + + G+KP +Y ++ +G D + E L K +P+ Y I L+
Sbjct: 489 VWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLD 548
Query: 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516
L +I +A ++ N M D+ + +CN L+
Sbjct: 549 GLCMQKDISRAVDLLNSML-DRGCDPDVITCNTFLNT 584
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 129/314 (41%), Gaps = 45/314 (14%)
Query: 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219
N GF + W+ +Q ++ D T + +G+ ++F + D+++ G P+ +T++
Sbjct: 346 NALGF--FYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYN 403
Query: 220 ILIVAYLSAPV-------------QGC-------------------LDEACSIYNRMIQL 247
LI +Y A GC LD A +Y RM Q
Sbjct: 404 RLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM-QA 462
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
GG P ++ + L K G +L A +F ++ G Y+ ++ LH+
Sbjct: 463 GGLSPDTFTYSVIINCL-GKAG-----HLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
N + L ++MQ AGFE K V+ V G +E+AE + ++ N IP
Sbjct: 517 ARNY--QNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTE-MQQKNWIPD 573
Query: 368 -PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMK 426
P + ++ + K G K+ + ++ M +VP + ++ + + L++
Sbjct: 574 EPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQ 633
Query: 427 EFVETGMKPLMPSY 440
+ G++P + +Y
Sbjct: 634 NMLALGLRPSLQTY 647
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 761 | ||||||
| 255561657 | 835 | pentatricopeptide repeat-containing prot | 0.960 | 0.875 | 0.659 | 0.0 | |
| 225428729 | 823 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.897 | 0.664 | 0.0 | |
| 297741318 | 790 | unnamed protein product [Vitis vinifera] | 0.971 | 0.935 | 0.664 | 0.0 | |
| 356519449 | 763 | PREDICTED: pentatricopeptide repeat-cont | 0.871 | 0.868 | 0.640 | 0.0 | |
| 356577031 | 737 | PREDICTED: pentatricopeptide repeat-cont | 0.854 | 0.881 | 0.650 | 0.0 | |
| 449468730 | 797 | PREDICTED: pentatricopeptide repeat-cont | 0.948 | 0.905 | 0.596 | 0.0 | |
| 449528187 | 747 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.934 | 0.615 | 0.0 | |
| 297836204 | 841 | hypothetical protein ARALYDRAFT_343169 [ | 0.939 | 0.850 | 0.587 | 0.0 | |
| 240254458 | 849 | pentatricopeptide repeat-containing prot | 0.940 | 0.843 | 0.582 | 0.0 | |
| 357436027 | 775 | Pentatricopeptide repeat-containing prot | 0.881 | 0.865 | 0.581 | 0.0 |
| >gi|255561657|ref|XP_002521838.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538876|gb|EEF40474.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/766 (65%), Positives = 615/766 (80%), Gaps = 35/766 (4%)
Query: 24 PHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEK--DSSQEEKWDMFKNSDAESGSVD 81
P + T+ + H ++ + +S +T EQLA E S EEKWD+ +D E
Sbjct: 73 PFLRTLHISPNKHKKTSSFCTLSSFNTSAEQLACESLSPSKNEEKWDISSYNDNEHEIFK 132
Query: 82 FDVGT-AGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKK 140
FD + AG +++HL P +EV EL+ELPEQWRRA+LAWLCK+LP+HK GTLV+ILNAQKK
Sbjct: 133 FDGDSGAGVDLKHLDTPALEVKELQELPEQWRRARLAWLCKQLPAHKAGTLVKILNAQKK 192
Query: 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCR 200
W+RQED TY+AVHCMRIRENE GFRVY+WMMQQHWYRFDF LATKLADYMGKERKFAKCR
Sbjct: 193 WMRQEDATYIAVHCMRIRENEAGFRVYKWMMQQHWYRFDFGLATKLADYMGKERKFAKCR 252
Query: 201 DIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSL 260
+IFDDIINQGRVPSE TFHILI+AYLSAPVQGCL+EAC+IYNRMIQLGGYQPR SLHNSL
Sbjct: 253 EIFDDIINQGRVPSESTFHILIIAYLSAPVQGCLEEACTIYNRMIQLGGYQPRLSLHNSL 312
Query: 261 FRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320
FRALVSKPGG +K+YL+QAEFI+HNL+TSGLEIQ DIY GLIWLHSYQDNIDK RI+ ++
Sbjct: 313 FRALVSKPGGFAKHYLKQAEFIYHNLVTSGLEIQNDIYGGLIWLHSYQDNIDKVRIASIR 372
Query: 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380
+EM+QAG EG+E+LLS++R C+KEGDVE+AE+TWL+LL+ D G+PT AFVY+ME +AK+
Sbjct: 373 EEMKQAGIMEGREILLSIMRACSKEGDVEEAERTWLKLLQVDGGLPTQAFVYRMEVFAKL 432
Query: 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440
GE MKSLE FREMQE LGS+S+ AYHKIIE++ +A+E EL ESLM+EF+++G+KPLMPS+
Sbjct: 433 GEHMKSLETFREMQELLGSSSIAAYHKIIEVVSQAQEVELAESLMQEFIKSGLKPLMPSF 492
Query: 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500
+L NMYLNL +H++L F CLE CRPNR IY +YL+SL GN++KAEE FN+M S+
Sbjct: 493 TDLMNMYLNLNLHEKLESTFFACLENCRPNRNIYNVYLDSLVKVGNLDKAEEAFNNMCSN 552
Query: 501 QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVK 560
+ +GVN RSCN IL YLSSGD+VKAEKIYDLMC KKY+IE + MEKLDYVLSL+RK VK
Sbjct: 553 EAVGVNIRSCNTILRGYLSSGDYVKAEKIYDLMCQKKYDIEPSLMEKLDYVLSLSRKVVK 612
Query: 561 KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHE 620
KP+SL LS +QRE L+GLLLGGL +ESD+ RK+HMIRF+FNENS H++LRR+LYD+YHE
Sbjct: 613 KPLSLKLSKDQREILVGLLLGGLRVESDDNRKKHMIRFEFNENSSTHAILRRHLYDKYHE 672
Query: 621 WLHPSFK--------------------------FWPKGRLVIPKLIHRWLTPRALAYWFM 654
WLHPS K FWPKG+ +IPKLIHRWL+P+ LA+W+M
Sbjct: 673 WLHPSCKLSDGSDGASYRFSTISHSYFSFYAEQFWPKGQPMIPKLIHRWLSPQVLAFWYM 732
Query: 655 YGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKL 714
Y GHRTS GDILLKLK S EG+ VFKTLK++SL+C+VK+KGRVFWIGFLG++S FWKL
Sbjct: 733 YAGHRTSSGDILLKLKGSREGVEKVFKTLKSKSLNCKVKRKGRVFWIGFLGNDSVWFWKL 792
Query: 715 IEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDEKASDYSDD 760
+EPY+LD+LK L G + + +NINFD GSD S+YSDD
Sbjct: 793 VEPYILDDLKL-FLKAGDQTLEYSAENINFDSGSD-----SEYSDD 832
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428729|ref|XP_002281969.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/779 (66%), Positives = 609/779 (78%), Gaps = 40/779 (5%)
Query: 9 LPSITLSLQRHVSFFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWD 68
L S++LS FFP + T S F PL A S+FVEQ+ GE + + E +
Sbjct: 57 LCSLSLSNYSKSFFFP-LPTTNIRHSSLFRRPPL--AKPLSSFVEQVVGESERDENEGF- 112
Query: 69 MFKNSDAESGSVDFDVGTAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKG 128
+ E S DF V +++RHL P +EV ELEELPEQWRR+KLAWLCKELP+HK
Sbjct: 113 ---SRGGEGESFDFGVAFGSTDLRHLSSPSLEVKELEELPEQWRRSKLAWLCKELPAHKP 169
Query: 129 GTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLAD 188
TL+RILNAQKKW+RQED TY+AVHCMRIRENETGFRVY+WMMQQHW++FDFALATKLAD
Sbjct: 170 ATLIRILNAQKKWVRQEDATYIAVHCMRIRENETGFRVYKWMMQQHWFQFDFALATKLAD 229
Query: 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248
YMGKERKF+KCR+IFDDII QG VP E TFHILI+AYLSA VQGCLDEAC IYNRMIQLG
Sbjct: 230 YMGKERKFSKCREIFDDIIKQGLVPCESTFHILIIAYLSASVQGCLDEACGIYNRMIQLG 289
Query: 249 GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ 308
GYQPR SLHNSLFRALV +PGG SKY+L+QAEFIFHNL+T G EI KD+Y GLIWLHSYQ
Sbjct: 290 GYQPRLSLHNSLFRALVGQPGGSSKYFLKQAEFIFHNLVTFGFEIHKDVYGGLIWLHSYQ 349
Query: 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP 368
D ID+ERI+ L++EMQ AG EE ++VLLS+LR C+KEGDVE+AEKTWL+LL SD IP+
Sbjct: 350 DTIDRERIASLREEMQLAGIEESRDVLLSILRACSKEGDVEEAEKTWLKLLHSDCAIPSQ 409
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
FVY+ME YAK+GE MKSLEIFREMQE+LGS SV AYHKIIE+L KA+E EL ESLM EF
Sbjct: 410 GFVYRMEVYAKVGEPMKSLEIFREMQEQLGSTSVVAYHKIIEVLSKAQEIELVESLMTEF 469
Query: 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488
+ +GMKPLMPSYI+L NMY NL +HD+L AF ECLEKCRPNR IY IY++SL GN++
Sbjct: 470 INSGMKPLMPSYIDLMNMYFNLSLHDKLEAAFYECLEKCRPNRAIYNIYMDSLVQIGNLD 529
Query: 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548
KAEEIFN M+S+ IGVNT+SCN ILS YLS GD++KAEKIYDLMC KKY I++ MEKL
Sbjct: 530 KAEEIFNQMYSNGAIGVNTKSCNTILSGYLSCGDYLKAEKIYDLMCQKKYAIDAPLMEKL 589
Query: 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHS 608
DYVLSL+RK VK+PVSL LS EQRE LIGLLLGGL +ESDE+RK H+I F+FNENS HS
Sbjct: 590 DYVLSLSRKVVKRPVSLKLSKEQREILIGLLLGGLQMESDEERKNHVIYFEFNENSGAHS 649
Query: 609 VLRRYLYDQYHEWLHPSFK--------------------------FWPKGRLVIPKLIHR 642
VLRR++++QYHEWL+ S K FWP+GR +IPKLIHR
Sbjct: 650 VLRRHIHEQYHEWLNSSSKLSDDNDDVPYKFSTISHSYFGFYADQFWPRGRPMIPKLIHR 709
Query: 643 WLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIG 702
WL+PR LAYW+MYGGHRTS GDILLKLK S EG+ V +TLKA+S+DCRVK+KG VFWIG
Sbjct: 710 WLSPRVLAYWYMYGGHRTSSGDILLKLKGSREGVEKVVRTLKAQSMDCRVKRKGTVFWIG 769
Query: 703 FLGSNSTLFWKLIEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDEKASDYSDDD 761
LGSNST FWKLIEPY+LD++K D + G + I+F GSD+DE A+DYSD++
Sbjct: 770 LLGSNSTWFWKLIEPYILDDVK-DFVKAGCQ------NTISFGSGSDTDENAADYSDNE 821
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741318|emb|CBI32449.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/779 (66%), Positives = 609/779 (78%), Gaps = 40/779 (5%)
Query: 9 LPSITLSLQRHVSFFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWD 68
L S++LS FFP + T S F PL A S+FVEQ+ GE + + E +
Sbjct: 24 LCSLSLSNYSKSFFFP-LPTTNIRHSSLFRRPPL--AKPLSSFVEQVVGESERDENEGF- 79
Query: 69 MFKNSDAESGSVDFDVGTAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKG 128
+ E S DF V +++RHL P +EV ELEELPEQWRR+KLAWLCKELP+HK
Sbjct: 80 ---SRGGEGESFDFGVAFGSTDLRHLSSPSLEVKELEELPEQWRRSKLAWLCKELPAHKP 136
Query: 129 GTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLAD 188
TL+RILNAQKKW+RQED TY+AVHCMRIRENETGFRVY+WMMQQHW++FDFALATKLAD
Sbjct: 137 ATLIRILNAQKKWVRQEDATYIAVHCMRIRENETGFRVYKWMMQQHWFQFDFALATKLAD 196
Query: 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248
YMGKERKF+KCR+IFDDII QG VP E TFHILI+AYLSA VQGCLDEAC IYNRMIQLG
Sbjct: 197 YMGKERKFSKCREIFDDIIKQGLVPCESTFHILIIAYLSASVQGCLDEACGIYNRMIQLG 256
Query: 249 GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ 308
GYQPR SLHNSLFRALV +PGG SKY+L+QAEFIFHNL+T G EI KD+Y GLIWLHSYQ
Sbjct: 257 GYQPRLSLHNSLFRALVGQPGGSSKYFLKQAEFIFHNLVTFGFEIHKDVYGGLIWLHSYQ 316
Query: 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP 368
D ID+ERI+ L++EMQ AG EE ++VLLS+LR C+KEGDVE+AEKTWL+LL SD IP+
Sbjct: 317 DTIDRERIASLREEMQLAGIEESRDVLLSILRACSKEGDVEEAEKTWLKLLHSDCAIPSQ 376
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
FVY+ME YAK+GE MKSLEIFREMQE+LGS SV AYHKIIE+L KA+E EL ESLM EF
Sbjct: 377 GFVYRMEVYAKVGEPMKSLEIFREMQEQLGSTSVVAYHKIIEVLSKAQEIELVESLMTEF 436
Query: 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488
+ +GMKPLMPSYI+L NMY NL +HD+L AF ECLEKCRPNR IY IY++SL GN++
Sbjct: 437 INSGMKPLMPSYIDLMNMYFNLSLHDKLEAAFYECLEKCRPNRAIYNIYMDSLVQIGNLD 496
Query: 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548
KAEEIFN M+S+ IGVNT+SCN ILS YLS GD++KAEKIYDLMC KKY I++ MEKL
Sbjct: 497 KAEEIFNQMYSNGAIGVNTKSCNTILSGYLSCGDYLKAEKIYDLMCQKKYAIDAPLMEKL 556
Query: 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHS 608
DYVLSL+RK VK+PVSL LS EQRE LIGLLLGGL +ESDE+RK H+I F+FNENS HS
Sbjct: 557 DYVLSLSRKVVKRPVSLKLSKEQREILIGLLLGGLQMESDEERKNHVIYFEFNENSGAHS 616
Query: 609 VLRRYLYDQYHEWLHPSFK--------------------------FWPKGRLVIPKLIHR 642
VLRR++++QYHEWL+ S K FWP+GR +IPKLIHR
Sbjct: 617 VLRRHIHEQYHEWLNSSSKLSDDNDDVPYKFSTISHSYFGFYADQFWPRGRPMIPKLIHR 676
Query: 643 WLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIG 702
WL+PR LAYW+MYGGHRTS GDILLKLK S EG+ V +TLKA+S+DCRVK+KG VFWIG
Sbjct: 677 WLSPRVLAYWYMYGGHRTSSGDILLKLKGSREGVEKVVRTLKAQSMDCRVKRKGTVFWIG 736
Query: 703 FLGSNSTLFWKLIEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDEKASDYSDDD 761
LGSNST FWKLIEPY+LD++K D + G + I+F GSD+DE A+DYSD++
Sbjct: 737 LLGSNSTWFWKLIEPYILDDVK-DFVKAGCQ------NTISFGSGSDTDENAADYSDNE 788
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519449|ref|XP_003528385.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/696 (64%), Positives = 552/696 (79%), Gaps = 33/696 (4%)
Query: 86 TAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQE 145
+A +E R L P VEV EL +PE+WRRA++AWLCKELP+HK GTLVRILNAQKKW+ QE
Sbjct: 72 SAEAEARGLRGPEVEVGELSAVPEEWRRARVAWLCKELPAHKAGTLVRILNAQKKWMWQE 131
Query: 146 DGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDD 205
D TY+ VHC+R+RENET F+VY+WMMQ++WYRFDFALATKLADYMGKE KF+KCR++FDD
Sbjct: 132 DATYVLVHCLRVRENETAFKVYKWMMQRNWYRFDFALATKLADYMGKEGKFSKCREVFDD 191
Query: 206 IINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV 265
IINQGRVPSE TFHIL+VAYLSAPVQGCLDEACSIYNRMIQLGGYQPR S+HNS+F+ALV
Sbjct: 192 IINQGRVPSESTFHILVVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRLSIHNSVFKALV 251
Query: 266 SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ 325
S PG LSK YL+QAEFI+H+L+T+GL++ K+IY GLIWLHSYQD+IDKERI+ L++ M +
Sbjct: 252 SNPGILSKNYLKQAEFIYHHLVTTGLDVHKEIYGGLIWLHSYQDSIDKERIAELREAMLR 311
Query: 326 AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385
AGFEE +EVLLS+LR CA+EG+VE+AEK+W++LLE +N P AFVYKME Y+K+G MK
Sbjct: 312 AGFEEDREVLLSILRACAREGEVEEAEKSWVKLLEFENDPPALAFVYKMEVYSKVGMPMK 371
Query: 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445
SL+IFREMQ +LG V AY++IIE+LCKA+E+EL ES+M +FV++ +KPL PSY+ L +
Sbjct: 372 SLDIFREMQSKLGRTDVAAYNQIIEILCKAQESELAESIMADFVKSDLKPLTPSYVYLLS 431
Query: 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505
MY NL +HD+L +F +CLEKCRPN IY IYL SL GNI+KAE+IFN M+ D TIGV
Sbjct: 432 MYFNLELHDKLEESFYKCLEKCRPNCAIYSIYLNSLVKIGNIDKAEDIFNQMNHDATIGV 491
Query: 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565
N RSCNIILS YLSSG +KAEK+YD MCLKKYEIES+ ME+LDY+LSL RK VK+P+S+
Sbjct: 492 NARSCNIILSGYLSSGKHLKAEKVYDFMCLKKYEIESSLMEQLDYILSLKRKVVKRPISM 551
Query: 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPS 625
LS EQRE +IGLLLGGL I+SD++R+ H+IRF F+ NS H VL+ ++Y + EWLHP+
Sbjct: 552 KLSKEQREIMIGLLLGGLRIDSDDRRRNHIIRFDFDGNSGSHYVLKSHIYHLFFEWLHPT 611
Query: 626 FK--------------------------FWPKGRLVIPKLIHRWLTPRALAYWFMYGGHR 659
K FW KG IPKL+HRWL+P LAYW+MYGGHR
Sbjct: 612 CKPGDNSENIPDKFCTIASSHFGFYADQFWSKGEPSIPKLVHRWLSPCVLAYWYMYGGHR 671
Query: 660 TSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYV 719
S GDILLK+K S EG+ + + K S+DC+VK+KGRVFWIG LGSNST FWKL+EPYV
Sbjct: 672 NSSGDILLKVKGSREGVENIVRKFKGMSMDCKVKRKGRVFWIGILGSNSTWFWKLVEPYV 731
Query: 720 LDELKEDLLNEGSEYRKLD---TQNINFDCGSDSDE 752
++ +D G E ++ D T++INF+ SDSDE
Sbjct: 732 IE--NKDFAEAGDETKEQDAKETEDINFN--SDSDE 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577031|ref|XP_003556633.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/683 (65%), Positives = 552/683 (80%), Gaps = 33/683 (4%)
Query: 99 VEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIR 158
+EV+EL +PE+WRRA++AWLCKELP+HK GTLVRILNAQKKW+RQED TY+ VHC+R+R
Sbjct: 59 MEVLELSAVPEEWRRARVAWLCKELPAHKAGTLVRILNAQKKWMRQEDATYVLVHCLRVR 118
Query: 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTF 218
ENET F+VY+WMMQ++WYRFDFALATKLADYMGKERKF+KCR++FDDIINQGRVPSE TF
Sbjct: 119 ENETAFKVYKWMMQRNWYRFDFALATKLADYMGKERKFSKCREVFDDIINQGRVPSESTF 178
Query: 219 HILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQ 278
HIL+VAYLSAPVQGCLDEACSIYNRMIQLGGYQPR SLH+SLF+ALVS PG LSK YL+Q
Sbjct: 179 HILVVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRLSLHSSLFKALVSNPGILSKNYLKQ 238
Query: 279 AEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSV 338
AEFI+H+L+T+GL++ K+IY GLIWLHSYQD+IDKERI+ L++ M +AGFEE +EVLLS+
Sbjct: 239 AEFIYHHLVTTGLDVHKEIYGGLIWLHSYQDSIDKERIAELREAMLRAGFEEDREVLLSI 298
Query: 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG 398
LR CA+EG+V++AEKTW++LL+ ++ P AFVYKME Y+K+G MKSL+IFREMQ +LG
Sbjct: 299 LRACAREGEVDEAEKTWVKLLKFESEPPALAFVYKMEVYSKVGMPMKSLDIFREMQSKLG 358
Query: 399 SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458
V AY++IIE+LCKA+E+EL ES+M++FV +G+KP+ PSY+ L +MY L +HD+L
Sbjct: 359 RTDVAAYNQIIEILCKAQESELAESIMEDFVRSGLKPVTPSYVYLLSMYFTLELHDKLEE 418
Query: 459 AFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518
AF +CLEKCRPN T+Y IYL SL GNI+KAE+IFN M+ D TIGVN RSCNIILS YL
Sbjct: 419 AFYQCLEKCRPNCTLYSIYLNSLVKIGNIDKAEDIFNQMNRDATIGVNARSCNIILSGYL 478
Query: 519 SSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578
SSG+ +KAEK+YD MCLKKYEI+S MEKLDY+LSL RK VK+P+SL LS EQRE LIGL
Sbjct: 479 SSGNHLKAEKVYDFMCLKKYEIKSPLMEKLDYILSLKRKVVKRPISLKLSKEQREILIGL 538
Query: 579 LLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFK----------- 627
LLGGL I+SD++R+ H+IRF F+ NS H VL+ ++Y Q++EWLHP+ K
Sbjct: 539 LLGGLQIDSDDQRRNHIIRFDFDRNSGSHYVLKSHIYHQFYEWLHPTCKPGDNSENIPDK 598
Query: 628 ---------------FWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVS 672
FW KG IPKL+HRWL+P LAYW+MYGGHR S GDILLK+K S
Sbjct: 599 FCTIASSHFGFYADQFWSKGEPTIPKLVHRWLSPCVLAYWYMYGGHRNSSGDILLKIKGS 658
Query: 673 SEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEGS 732
EG+ + + KA S+DC+VK+KGRVFWIG LGSNST FWKL+EPY+ ++ E+ G
Sbjct: 659 REGVENIVRKFKAMSMDCKVKRKGRVFWIGILGSNSTWFWKLVEPYIKED--EEFSEAGD 716
Query: 733 EYRKLD---TQNINFDCGSDSDE 752
E ++ D T++INF+ SDSDE
Sbjct: 717 ETKEQDTEKTEDINFN--SDSDE 737
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468730|ref|XP_004152074.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/771 (59%), Positives = 579/771 (75%), Gaps = 49/771 (6%)
Query: 21 SFFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSV 80
+ F +V+ P+ P A + +FV+QL + DS E + + +
Sbjct: 41 TLFLPAYSVKVPQ------LPRIRAFASGSFVKQLVYDHDSPSESEEHLSSSFSNGGDGF 94
Query: 81 DFDVGTAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKK 140
F+ G A +++HLG PV+EV EL+ELPEQWRR+K+AWLCKELP+ K GT++R+LNAQKK
Sbjct: 95 HFENGFASVDLKHLGTPVLEVKELDELPEQWRRSKVAWLCKELPAQKPGTVIRLLNAQKK 154
Query: 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCR 200
W+ Q+D TYL VHC+RIRENET FRVY+WMMQQHWYRFD+AL+TKLADYMGKERKF+KCR
Sbjct: 155 WMGQDDATYLTVHCLRIRENETAFRVYKWMMQQHWYRFDYALSTKLADYMGKERKFSKCR 214
Query: 201 DIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSL 260
++FDDIINQG VPSE TFHILIVAYLSAPVQGC++EA +IYNRMIQLGGYQPR SLH+SL
Sbjct: 215 EVFDDIINQGCVPSESTFHILIVAYLSAPVQGCIEEASTIYNRMIQLGGYQPRLSLHSSL 274
Query: 261 FRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320
FRALVSKPG LSK++L+QAEFI+HNL+TSGLE+ KD+Y GLIWLHSYQD ID+ERI L+
Sbjct: 275 FRALVSKPGDLSKHHLKQAEFIYHNLVTSGLELHKDMYGGLIWLHSYQDTIDRERIVSLR 334
Query: 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380
KEMQQAG +E +EVLLS+LR +K GDV +AEK W L D +P+ AFVYKME YAK+
Sbjct: 335 KEMQQAGIKEEREVLLSILRASSKMGDVMEAEKLWQELKYLDGNMPSQAFVYKMEVYAKM 394
Query: 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440
G+ MK+LEIFREM E+L S + AY II +LCK + EL ES+M F+E+ +KPL P+Y
Sbjct: 395 GKPMKALEIFREM-EQLNSTNAAAYQTIIGILCKFQVIELAESIMAGFIESNLKPLTPAY 453
Query: 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500
++L NM+ NL + D+L L FS+CLEKC+PNRTIY IYL+SL GN+++AEEIF+ M ++
Sbjct: 454 VDLMNMFFNLNLDDKLELTFSQCLEKCKPNRTIYSIYLDSLVKVGNLDRAEEIFSQMETN 513
Query: 501 QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVK 560
IG+N RSCNIIL YL G+++KAEKIYDLMC K+Y+I+ MEKL+Y+LSL+RKEVK
Sbjct: 514 GEIGINARSCNIILRGYLLCGNYMKAEKIYDLMCQKRYDIDPPLMEKLEYILSLSRKEVK 573
Query: 561 KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHE 620
KP+SL LS EQRE L+GLLLGGL IESD++RK H I+F+F+ N + HSVLRR++Y+QYH+
Sbjct: 574 KPMSLKLSKEQREILVGLLLGGLEIESDDERKNHRIQFEFHRNCKTHSVLRRHIYEQYHK 633
Query: 621 WLHPSFK--------------------------FWPKGRLVIPKLIHRWLTPRALAYWFM 654
WLH + K FWP+GR IP LIHRWL+PR LAYW+M
Sbjct: 634 WLHSASKLTDGDVDIPYKFCTVSHSYFGFYADQFWPRGRRAIPNLIHRWLSPRVLAYWYM 693
Query: 655 YGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKL 714
YGG RTS GDILLKLK S EG+ + K+L+ +S+ C+VK+KG ++WIG LGSN+T FWKL
Sbjct: 694 YGGCRTSSGDILLKLKGSHEGVEKIVKSLREKSIHCKVKRKGNMYWIGLLGSNATWFWKL 753
Query: 715 IEPYVLDELKE----DLLN-----EGSEYRKLDTQNINFDCGSDSDEKASD 756
IEP++LD LKE D LN GSE NINFD SDS E+ S+
Sbjct: 754 IEPFILDYLKESTQADSLNLVGVLNGSE-------NINFDSESDSVEETSN 797
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528187|ref|XP_004171087.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/741 (61%), Positives = 568/741 (76%), Gaps = 43/741 (5%)
Query: 51 FVEQLAGEKDSSQEEKWDMFKNSDAESGSVDFDVGTAGSEMRHLGEPVVEVIELEELPEQ 110
FV+QL + DS E + + + F+ G A +++HLG PV+EV EL+ELPEQ
Sbjct: 15 FVKQLVYDHDSPSESEEHLSSSFSNGGDGFHFENGFASVDLKHLGTPVLEVKELDELPEQ 74
Query: 111 WRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWM 170
WRR+K+AWLCKELP+ K GT++R+LNAQKKW+ Q+D TYL VHC+RIRENET FRVY+WM
Sbjct: 75 WRRSKVAWLCKELPAQKPGTVIRLLNAQKKWMGQDDATYLTVHCLRIRENETAFRVYKWM 134
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
MQQHWYRFD+AL+TKLADYMGKERKF+KCR++FDDIINQG VPSE TFHILIVAYLSAPV
Sbjct: 135 MQQHWYRFDYALSTKLADYMGKERKFSKCREVFDDIINQGCVPSESTFHILIVAYLSAPV 194
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
QGC++EA +IYNRMIQLGGYQPR SLH+SLFRALVSKPG LSK++L+QAEFI+HNL+TSG
Sbjct: 195 QGCVEEASTIYNRMIQLGGYQPRLSLHSSLFRALVSKPGDLSKHHLKQAEFIYHNLVTSG 254
Query: 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350
LE+ KDIY GLIWLHSYQD ID+ERI L+KEMQQAG +E +EVLLS+LR +K GDV +
Sbjct: 255 LELHKDIYGGLIWLHSYQDTIDRERIVSLRKEMQQAGIKEEREVLLSILRASSKMGDVME 314
Query: 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410
AEK W L D +P+ AFVYKME YAK+G+ MK+LEIFREM E+L S + AY II
Sbjct: 315 AEKLWQELKYLDGNMPSQAFVYKMEVYAKMGKPMKALEIFREM-EQLNSTNAAAYQTIIG 373
Query: 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470
+LCK + EL ES+M F+E+ +KPL P+Y++L NM+ NL + D+L L FS+CLEKC+PN
Sbjct: 374 ILCKFQVIELAESIMAGFIESNLKPLTPAYVDLMNMFFNLNLDDKLELTFSQCLEKCKPN 433
Query: 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530
RTIY IYL+SL GN+++AEEIF+ M ++ IG+N RSCNIIL YL G+++KAEKIY
Sbjct: 434 RTIYSIYLDSLVKVGNLDRAEEIFSQMETNGEIGINARSCNIILRGYLLCGNYMKAEKIY 493
Query: 531 DLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEK 590
DLMC K+Y+I+ MEKL+Y+LSL+RKEVKKP+SL LS EQRE L+GLLLGGL IESDE+
Sbjct: 494 DLMCQKRYDIDPPLMEKLEYILSLSRKEVKKPMSLKLSKEQREILVGLLLGGLEIESDEE 553
Query: 591 RKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFK----------------------- 627
RK H I+F+F+ N + HSVLRR++Y+QYH+WLH + K
Sbjct: 554 RKNHRIQFEFHRNCKTHSVLRRHIYEQYHKWLHSASKLTDGDVDIPYKFCTVSHSYFGFY 613
Query: 628 ---FWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLK 684
FWP+GR IP LIHRWL+PR LAYW+MYGG RTS GDILLKLK S EG+ + K+L+
Sbjct: 614 ADQFWPRGRRAIPNLIHRWLSPRVLAYWYMYGGCRTSSGDILLKLKGSHEGVEKIVKSLR 673
Query: 685 ARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKE----DLLN-----EGSEYR 735
+S+ C+VK+KG ++WIG LG+N+T FWKLIEP++LD LKE D LN GSE
Sbjct: 674 EKSIHCKVKRKGNMYWIGLLGTNATWFWKLIEPFILDYLKESTQADSLNLVGVLNGSE-- 731
Query: 736 KLDTQNINFDCGSDSDEKASD 756
NINFD SDS E+ S+
Sbjct: 732 -----NINFDSESDSVEETSN 747
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836204|ref|XP_002885984.1| hypothetical protein ARALYDRAFT_343169 [Arabidopsis lyrata subsp. lyrata] gi|297331824|gb|EFH62243.1| hypothetical protein ARALYDRAFT_343169 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/761 (58%), Positives = 570/761 (74%), Gaps = 46/761 (6%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S + S + D
Sbjct: 85 FFSHSST-RTPP----LFTANSAAQRSGTFVEHLTGITESK-----------EGSSEAND 128
Query: 82 F-DVGTAGSEMRHLGEPVVEVIELEEL----PEQWRRAKLAWLCKELPSHKGGTLVRILN 136
F DV +A +++R++ VE PE+WRR+KLAWLCKE+P+HK TLVR+LN
Sbjct: 129 FGDVESARNDIRNVTTRRVETEVEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLN 188
Query: 137 AQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196
AQKKW+RQED TY+AVHCMRIRENETGFRVY WM QQ+WYRFDF L TKLADY+GKERKF
Sbjct: 189 AQKKWVRQEDATYIAVHCMRIRENETGFRVYRWMTQQNWYRFDFGLVTKLADYLGKERKF 248
Query: 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPS 255
KCR++FDDI+NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR S
Sbjct: 249 TKCREVFDDIMNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLS 308
Query: 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315
LHNSLFRAL+SK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS Q+ +DK+R
Sbjct: 309 LHNSLFRALISKRGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQEEVDKDR 368
Query: 316 ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375
I+ L++EM +AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYKME
Sbjct: 369 INFLREEMMKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKME 428
Query: 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
AY+K+G+F K+LEIFREM+++LG A+V YHKIIE+LCK ++ E E+L+KEF E+G KP
Sbjct: 429 AYSKVGDFAKALEIFREMEKQLGGATVSGYHKIIEVLCKVQQVEFVETLLKEFEESGKKP 488
Query: 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495
L+PSYI + MY +LG+H++L +AF ECLEKC+P++TIY IYL+SL GN+EKA ++FN
Sbjct: 489 LLPSYIEIAKMYFDLGLHEKLEMAFVECLEKCQPSQTIYNIYLDSLVKIGNLEKAGDVFN 548
Query: 496 HMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLN 555
M ++ TI VN RSCN +L YL SG V+AE+IYDLM +KKYEIE MEKLDY+LSL
Sbjct: 549 EMKNNGTINVNARSCNNLLKGYLDSGKQVQAERIYDLMRMKKYEIEPLLMEKLDYILSLK 608
Query: 556 RKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLY 615
+KEVKKP+S+ LS EQRE L+GLLLGGL IESD+++K HMIRF+F ENS+ H +L+++++
Sbjct: 609 KKEVKKPLSMKLSKEQREVLVGLLLGGLQIESDKEKKSHMIRFEFRENSQAHLILKQHIH 668
Query: 616 DQYHEWLHP--SFK----------------------FWPKGRLVIPKLIHRWLTPRALAY 651
DQ+ EWLHP +F+ FWPKG+ IP LIHRWL+P +LAY
Sbjct: 669 DQFREWLHPLSNFQEDIIPFEFYSVPHSYFGFYAEHFWPKGQPEIPNLIHRWLSPHSLAY 728
Query: 652 WFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLF 711
W+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG++FWIG G+NS LF
Sbjct: 729 WYMYSGFKTSSGDIILRLKGSLEGVEKVVKALRAKSMECRVKKKGKIFWIGLQGTNSALF 788
Query: 712 WKLIEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDE 752
W LIEPYVL++LK+ L TQN D +E
Sbjct: 789 WNLIEPYVLEDLKDHLKPPSESIGNASTQNQKLDSTKPVEE 829
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254458|ref|NP_565382.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546786|sp|Q9XIL5.3|PP154_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15820 gi|25411674|pir||G84533 hypothetical protein At2g15820 [imported] - Arabidopsis thaliana gi|330251345|gb|AEC06439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/773 (58%), Positives = 580/773 (75%), Gaps = 57/773 (7%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S + +E+
Sbjct: 91 FFSHSST-RTPP----LFTANSTAQRSGTFVEHLTGITESEE---------GISEANGFG 136
Query: 82 FDVGTAGSEMRHLG----EPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNA 137
DV +A +++R++ E EV ELEELPE+WRR+KLAWLCKE+P+HK TLVR+LNA
Sbjct: 137 -DVESARNDIRNVATRRIETEFEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNA 195
Query: 138 QKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFA 197
QKKW+RQED TY++VHCMRIRENETGFRVY WM QQ+WYRFDF L TKLA+Y+GKERKF
Sbjct: 196 QKKWVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFT 255
Query: 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSL 256
KCR++FDD++NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR SL
Sbjct: 256 KCREVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSL 315
Query: 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERI 316
HNSLFRALVSK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS QD +D RI
Sbjct: 316 HNSLFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRI 375
Query: 317 SLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376
+ L++EM++AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYK+EA
Sbjct: 376 NSLREEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEA 435
Query: 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436
Y+K+G+F K++EIFREM++ +G A++ YHKIIE+LCK ++ EL E+LMKEF E+G KPL
Sbjct: 436 YSKVGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPL 495
Query: 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+PS+I + MY +LG+H++L +AF +CLEKC+P++ IY IYL+SL GN+EKA ++FN
Sbjct: 496 LPSFIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNE 555
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556
M ++ TI V+ RSCN +L YL G V+AE+IYDLM +KKYEIE MEKLDY+LSL +
Sbjct: 556 MKNNGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKK 615
Query: 557 KEVKK-PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLY 615
KEVKK P S+ LS +QRE L+GLLLGGL IESD+++K HMI+F+F ENS+ H VL++ ++
Sbjct: 616 KEVKKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIH 675
Query: 616 DQYHEWLHP---------SFKF---------------WPKGRLVIPKLIHRWLTPRALAY 651
DQ+ EWLHP F+F WPKG+ IPKLIHRWL+P +LAY
Sbjct: 676 DQFREWLHPLSNFQEDIIPFEFYSVPHSYFGFYAEHYWPKGQPEIPKLIHRWLSPHSLAY 735
Query: 652 WFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLF 711
W+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG+VFWIG G+NS LF
Sbjct: 736 WYMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECRVKKKGKVFWIGLQGTNSALF 795
Query: 712 WKLIEPYVLDELKEDLLNEGSE----YRKLDTQNINFDCGSDSDEKASDYSDD 760
WKLIEP+VL+ LKE L SE ++ + Q+INF SD+SDD
Sbjct: 796 WKLIEPHVLENLKEH-LKPASESLDNVKEAEEQSINFKSN-------SDHSDD 840
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436027|ref|XP_003588289.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357469333|ref|XP_003604951.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357520985|ref|XP_003630781.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477337|gb|AES58540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506006|gb|AES87148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524803|gb|AET05257.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/715 (58%), Positives = 530/715 (74%), Gaps = 44/715 (6%)
Query: 65 EKWDMFKNSDAESGSVDFDVGTA-GSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKEL 123
E+W + ++ + + F T E R L P VEV EL E+PE WRR+++AWLCKEL
Sbjct: 74 EQWLLHEDLPDNNDNDIFHFSTVEADEKRRLPRPEVEVKELSEVPELWRRSRVAWLCKEL 133
Query: 124 PSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALA 183
P+HK GTL+RILNAQ+KWLRQ+D TY+ +HC+RIRENET FRVY+WMMQ+ WYRFDFAL+
Sbjct: 134 PAHKAGTLIRILNAQRKWLRQDDATYIIMHCLRIRENETAFRVYKWMMQRSWYRFDFALS 193
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
T+LADYMGKERKF KCR++FDDIINQGRVPSE TFHILIVAYLS+ VQGCLDEA I+++
Sbjct: 194 TRLADYMGKERKFTKCREVFDDIINQGRVPSESTFHILIVAYLSSSVQGCLDEAFGIFHQ 253
Query: 244 MIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303
MIQLGGYQPR SLHNS+F+AL+S+PG SK YL+QAEFI+H L+T+GL++ KDIY GLIW
Sbjct: 254 MIQLGGYQPRLSLHNSIFKALISEPGNFSKQYLKQAEFIYHRLVTNGLDVHKDIYGGLIW 313
Query: 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363
LHSYQD+IDKERI L++EM +AG +E + + AEKTW +L + ++
Sbjct: 314 LHSYQDSIDKERIEALRQEMLRAGIDEREGEVEE-------------AEKTWCKLSQFES 360
Query: 364 GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423
P+ AFVYKME Y+K+G MKSLEIFREM+ +LG SV AY+KIIE+LCKA+E+E ES
Sbjct: 361 NPPSQAFVYKMEVYSKVGMPMKSLEIFREMKLKLGKTSVAAYNKIIEILCKAQESEFAES 420
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483
+M +FV++G+KPL PSY+ L NMY N+ HD+L AFS+CLEKC PN +Y IYL+SL
Sbjct: 421 IMTDFVKSGLKPLTPSYVYLLNMYFNMESHDKLEEAFSQCLEKCHPNSAVYSIYLDSLVK 480
Query: 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543
G I+KAE+IF+ M D +IGV+ RSCNIIL+ YL SG+ +KAEKIYDLMC KKYEI++
Sbjct: 481 VGKIDKAEDIFSQMFRDTSIGVSARSCNIILNGYLYSGNHLKAEKIYDLMCQKKYEIDAP 540
Query: 544 WMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNEN 603
MEKL+Y+LSL RK +KKP+S+ L+ EQRE LIG+LLGGL I+SD+K K H+I F F+ N
Sbjct: 541 LMEKLEYILSLRRKTIKKPMSMKLNKEQREILIGMLLGGLQIDSDDKNKNHIIHFNFDGN 600
Query: 604 SRMHSVLRRYLYDQYHEWLHPSFK--------------------------FWPKGRLVIP 637
S H VL+ +++ Q++EWL P+ K FWP G+ IP
Sbjct: 601 SVSHYVLKSHIHRQFYEWLPPTSKPSGDSENIPGKFCTIPSSHFGFYADQFWPNGQPTIP 660
Query: 638 KLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGR 697
KL+HRWL+P LAYW+MYGGHR S GD+LLK+K S EG+ + K KA S+DC+VK KG+
Sbjct: 661 KLVHRWLSPCVLAYWYMYGGHRNSSGDVLLKIKGSREGVENIVKKFKAMSIDCKVKGKGK 720
Query: 698 VFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEGSEYRKLD---TQNINFDCGSD 749
VFWIG LGSN+T FWKL+EPY+L+++K D G D TQ+INF SD
Sbjct: 721 VFWIGILGSNTTWFWKLVEPYILEDVK-DFSKAGVNTMGQDLTETQDINFSSESD 774
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 761 | ||||||
| TAIR|locus:2044541 | 849 | OTP51 "ORGANELLE TRANSCRIPT PR | 0.781 | 0.700 | 0.585 | 7.5e-192 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.419 | 0.364 | 0.228 | 9.5e-14 | |
| TAIR|locus:2157732 | 723 | EMB1006 "embryo defective 1006 | 0.457 | 0.481 | 0.214 | 4e-13 | |
| TAIR|locus:2031825 | 517 | AT1G13040 [Arabidopsis thalian | 0.434 | 0.640 | 0.245 | 1.6e-12 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.357 | 0.448 | 0.265 | 3.7e-12 | |
| TAIR|locus:1005716687 | 544 | AT1G66345 "AT1G66345" [Arabido | 0.486 | 0.680 | 0.222 | 4.9e-12 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.431 | 0.449 | 0.231 | 1.7e-11 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.445 | 0.356 | 0.233 | 2e-11 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.411 | 0.474 | 0.239 | 6.6e-11 | |
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.340 | 0.486 | 0.231 | 1.6e-10 |
| TAIR|locus:2044541 OTP51 "ORGANELLE TRANSCRIPT PROCESSING 51" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1859 (659.5 bits), Expect = 7.5e-192, P = 7.5e-192
Identities = 357/610 (58%), Positives = 458/610 (75%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S +E + D ES D
Sbjct: 91 FFSHSST-RTPP----LFTANSTAQRSGTFVEHLTGITES-EEGISEANGFGDVESARND 144
Query: 82 F-DVGTAGSEMRHLGXXXXXXXXXXXXXXQWRRAKLAWLCKELPSHKGGTLVRILNAQKK 140
+V T E +WRR+KLAWLCKE+P+HK TLVR+LNAQKK
Sbjct: 145 IRNVATRRIETEF------EVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNAQKK 198
Query: 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCR 200
W+RQED TY++VHCMRIRENETGFRVY WM QQ+WYRFDF L TKLA+Y+GKERKF KCR
Sbjct: 199 WVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFTKCR 258
Query: 201 DIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259
++FDD++NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR SLHNS
Sbjct: 259 EVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSLHNS 318
Query: 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLL 319
LFRALVSK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS QD +D RI+ L
Sbjct: 319 LFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRINSL 378
Query: 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379
++EM++AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYK+EAY+K
Sbjct: 379 REEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEAYSK 438
Query: 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439
+G+F K++EIFREM++ +G A++ YHKIIE+LCK ++ EL E+LMKEF E+G KPL+PS
Sbjct: 439 VGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPLLPS 498
Query: 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499
+I + MY +LG+H++L +AF +CLEKC+P++ IY IYL+SL GN+EKA ++FN M +
Sbjct: 499 FIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNEMKN 558
Query: 500 DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEV 559
+ TI V+ RSCN +L YL G V+AE+IYDLM +KKYEIE MEKLDY+LSL +KEV
Sbjct: 559 NGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKKKEV 618
Query: 560 KK-PVSLNLSSEQRENXXXXXXXXXCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQY 618
KK P S+ LS +QRE IESD+++K HMI+F+F ENS+ H VL++ ++DQ+
Sbjct: 619 KKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIHDQF 678
Query: 619 HEWLHPSFKF 628
EWLHP F
Sbjct: 679 REWLHPLSNF 688
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 76/333 (22%), Positives = 152/333 (45%)
Query: 200 RDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259
R++FD++ +G P+E TF IL+ Y A G D+ + N M G P ++N+
Sbjct: 167 RELFDEMPEKGCKPNEFTFGILVRGYCKA---GLTDKGLELLNAMESFG-VLPNKVIYNT 222
Query: 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI-DKERISL 318
+ + + G + +E + + GL ++ I + + D RI
Sbjct: 223 IVSSFCRE--GRN----DDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFS 276
Query: 319 LKKEMQQAGFEEGKEVLLSV-LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377
+ + G + ++ L+ K G +EDA+ + + E+D+ ++ ++
Sbjct: 277 DMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Query: 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437
+ G+F+++ + ++M ++ S+ +Y+ +++ LCK ++++ G+ P
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDA 396
Query: 438 PSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+Y L + Y ++G D E + C PN I L SL G I +AEE+
Sbjct: 397 VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRK 456
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529
M+ ++ G++T +CNII+ SG+ KA +I
Sbjct: 457 MN-EKGYGLDTVTCNIIVDGLCGSGELDKAIEI 488
|
|
| TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 79/368 (21%), Positives = 163/368 (44%)
Query: 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL 226
YEWM Q + L +G+ER + ++ ++ ++ + ++ L
Sbjct: 225 YEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEF-RDVRLYNAAISGL 283
Query: 227 SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286
SA + D+A +Y M ++ Y + ++ + K G +K + IF +
Sbjct: 284 SASQR--YDDAWEVYEAMDKINVYPDNVTC--AILITTLRKAGRSAKEVWE----IFEKM 335
Query: 287 LTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG 346
G++ +D++ GL+ S+ D KE +++ EM++ G V +++ K
Sbjct: 336 SEKGVKWSQDVFGGLV--KSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSN 393
Query: 347 DVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLG-SASVP 403
+E+ E + + D G+ A Y M+AYA+ + + REM++ LG +V
Sbjct: 394 HIEEVEGLFTEM--RDKGLKPSAATYNILMDAYARRMQPDIVETLLREMED-LGLEPNVK 450
Query: 404 AYHKIIELLCKAEE-TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462
+Y +I + ++ +++ + G+KP SY L + Y G H++ + +F E
Sbjct: 451 SYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEE 510
Query: 463 -CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521
C E +P+ Y L++ + +G+ K EI+ M ++ G + N +L + G
Sbjct: 511 MCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRI-TYNTLLDGFAKQG 569
Query: 522 DFVKAEKI 529
+++A +
Sbjct: 570 LYIEARDV 577
|
|
| TAIR|locus:2031825 AT1G13040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 86/350 (24%), Positives = 146/350 (41%)
Query: 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL 247
D + +E K F ++ +GR P +++ ILI A G + +A I+N MI+
Sbjct: 122 DLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRA---GKVTDAVEIWNAMIR- 177
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
G P N ALV K L E + + ++ +++ +Y+ LI
Sbjct: 178 SGVSP----DNKACAALVVGLCHARKVDLAY-EMVAEEIKSARVKLSTVVYNALISGFCK 232
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
I+K LK M + G E +L ++ AE ++ S GI
Sbjct: 233 AGRIEKAEA--LKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRS--GIQL 288
Query: 368 PAFVYK--MEAYAKIGEFMKSLEIF-REMQERLGSASVPAYHKIIELLCKAEETELTESL 424
A+ Y ++ + ++ K +EM+ R G V +Y +IE C+A T L
Sbjct: 289 DAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPR-GFCDVVSYSTLIETFCRASNTRKAYRL 347
Query: 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKN 483
+E + GM + +Y +L +L G + E P+R Y L+ L
Sbjct: 348 FEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCK 407
Query: 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+GN++KA +FN M + I + S N ++S SG +A K+++ M
Sbjct: 408 SGNVDKAYGVFNDM-IEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDM 456
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 77/290 (26%), Positives = 129/290 (44%)
Query: 148 TYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDII 207
T + +C ++ + GFR+ + M++ R D + L + + KE K +FD++
Sbjct: 280 TLINGYC-KVGNLDEGFRL-KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMC 337
Query: 208 NQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267
+G +P+++ F LI + G +D Y +M+ G QP L+N+L K
Sbjct: 338 KRGLIPNDVIFTTLIHGHSR---NGEIDLMKESYQKMLSKG-LQPDIVLYNTLVNGFC-K 392
Query: 268 PGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327
G L A I ++ GL K Y+ LI + D E ++KEM Q G
Sbjct: 393 NGDLVA-----ARNIVDGMIRRGLRPDKITYTTLI--DGFCRGGDVETALEIRKEMDQNG 445
Query: 328 FEEGKEVLLSVLRVCA--KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385
E + V S L VC KEG V DAE+ +L + + M+A+ K G+
Sbjct: 446 IELDR-VGFSAL-VCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQT 503
Query: 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
++ +EMQ SV Y+ ++ LCK + + + L+ + G+ P
Sbjct: 504 GFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
|
|
| TAIR|locus:1005716687 AT1G66345 "AT1G66345" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 86/386 (22%), Positives = 166/386 (43%)
Query: 150 LAVHCM-RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIIN 208
L V C +IR E GF V++ + + L T L Y K + I++ I+
Sbjct: 169 LLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNT-LIHYSSKSKIDDLVWRIYECAID 227
Query: 209 QGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKP 268
+ P+E+T I+I +G L E + +R+ G + PS+ + +LV +
Sbjct: 228 KRIYPNEITIRIMIQVLCK---EGRLKEVVDLLDRIC---GKRCLPSV--IVNTSLVFRV 279
Query: 269 GGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF 328
L + ++++ + LL + + YS +++ + + ++ R + EM Q GF
Sbjct: 280 --LEEMRIEESMSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSAR--KVFDEMLQRGF 335
Query: 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388
V +RVC ++GDV++AE+ + ES F + +A+ G K LE
Sbjct: 336 SANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLE 395
Query: 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448
M R S A++++++ + K E ++ + ++ G P +Y +L ++
Sbjct: 396 YCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFI 455
Query: 449 NLGMHDR-LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507
D+ L L + K P ++ + L G +E E+ M + I N
Sbjct: 456 EGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKK-RLIEPNA 514
Query: 508 RSCNIILSAYLSSGDFVKAEKIYDLM 533
+ ++ A+ GD A+++Y+ M
Sbjct: 515 DIYDALIKAFQKIGDKTNADRVYNEM 540
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 81/350 (23%), Positives = 157/350 (44%)
Query: 192 KERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQ 251
K+ K K + +G P +T++ LI AY S +G ++EA + N M G +
Sbjct: 247 KDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS---KGLMEEAFELMNAMPGKG-FS 302
Query: 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ-DN 310
P +N++ L K G KY ++A+ +F +L SGL Y L+ + D
Sbjct: 303 PGVYTYNTVINGLC-KHG---KY--ERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDV 356
Query: 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF 370
++ E++ +M+ S++ + + G+++ A + + E+ G+
Sbjct: 357 VETEKVF---SDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA--GLIPDNV 411
Query: 371 VYKM--EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
+Y + + Y + G ++ + EM ++ + V Y+ I+ LCK + + L E
Sbjct: 412 IYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEM 471
Query: 429 VETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGN 486
E + P + L + + LG + + + L F + EK R + Y L+ G+
Sbjct: 472 TERALFPDSYTLTILIDGHCKLGNLQNAMEL-FQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536
I+ A+EI+ M S + + S +I+++A S G +A +++D M K
Sbjct: 531 IDTAKEIWADMVSKEILPTPI-SYSILVNALCSKGHLAEAFRVWDEMISK 579
|
|
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 85/364 (23%), Positives = 156/364 (42%)
Query: 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
R +F L K + G+ + R+ F+ + +G P+ + LI AY V +DE
Sbjct: 309 RTEFGLMVK---FYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYA---VGRDMDE 362
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEIQK 295
A S +M + G + SL V GG SK + + A++ F +
Sbjct: 363 ALSCVRKMKEEG-------IEMSLVTYSVIV-GGFSKAGHAEAADYWFDEAKRIHKTLNA 414
Query: 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355
IY +I+ H N+ ER L +EM++ G + + +++ D + +
Sbjct: 415 SIYGKIIYAHCQTCNM--ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVF 472
Query: 356 LRLLESDNGIPTPAFV-YK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412
RL E G TP V Y + Y K+G+ K+LE+ R M+E ++ Y +I
Sbjct: 473 KRLKEC--GF-TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGF 529
Query: 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNR 471
K ++ ++ ++ V+ GMKP + Y N+ + + +G DR E + + RP
Sbjct: 530 VKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTT 589
Query: 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531
+ + +G++ ++ E+F+ M + + N +++ + KA +I D
Sbjct: 590 RTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPT-VHTFNGLINGLVEKRQMEKAVEILD 648
Query: 532 LMCL 535
M L
Sbjct: 649 EMTL 652
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 187 (70.9 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 81/338 (23%), Positives = 157/338 (46%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245
L D + K+ + + D++ +G VP+E+T++ LI ++G LD+A S+ RM+
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC---LKGKLDKAVSLLERMV 319
Query: 246 QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305
P + +L LV + A + ++ G + + IYS LI
Sbjct: 320 S-SKCIPNDVTYGTLINGLVKQRRATD------AVRLLSSMEERGYHLNQHIYSVLI-SG 371
Query: 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL--RVCAKEGDVEDAEKTWLRLLESDN 363
+++ +E +SL +K M + G + V+ SVL +C +EG +A++ R++ S
Sbjct: 372 LFKEGKAEEAMSLWRK-MAEKGCKPNI-VVYSVLVDGLC-REGKPNEAKEILNRMIAS-G 427
Query: 364 GIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421
+P A+ Y M+ + K G +++++++EM + S + Y +I+ LC +
Sbjct: 428 CLPN-AYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEA 486
Query: 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE--CLE--KCRPNRTIYGIY 477
+ + + G+KP +Y ++ +G D + E C E K +P+ Y I
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNIL 546
Query: 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515
L+ L +I +A ++ N M D+ + +CN L+
Sbjct: 547 LDGLCMQKDISRAVDLLNSM-LDRGCDPDVITCNTFLN 583
|
|
| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 63/272 (23%), Positives = 124/272 (45%)
Query: 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLR 357
YS L L++ DN++K R++L KEM++ ++ + S++ + A GD + TW +
Sbjct: 269 YSVLTNLYAKTDNVEKARLAL--KEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKK 326
Query: 358 LLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417
+ S + ++ + A K+GEF ++ ++ E + G+ + I+ +E
Sbjct: 327 VKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDE 386
Query: 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---N-RTI 473
L E + VE G+ P ++ LT YL +++ F + ++ + N R +
Sbjct: 387 VLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLV 446
Query: 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIG-VNTRSCNIILSAYLSSGDFVKAEKIYDL 532
G E L+ GN++ AE++ + Q G VNT+ N +L Y +G+ A + +
Sbjct: 447 KGACKE-LEEQGNVKGAEKLMTLL---QKAGYVNTQLYNSLLRTYAKAGEM--ALIVEER 500
Query: 533 MCLKKYEIESAWMEKLDYVLSLNRKEVKKPVS 564
M E++ E + + E+ +S
Sbjct: 501 MAKDNVELDEETKELIRLTSQMRVTEISSTIS 532
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9XIL5 | PP154_ARATH | No assigned EC number | 0.5821 | 0.9408 | 0.8433 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 761 | |||
| pfam03161 | 177 | pfam03161, LAGLIDADG_2, LAGLIDADG DNA endonuclease | 2e-21 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 |
| >gnl|CDD|217395 pfam03161, LAGLIDADG_2, LAGLIDADG DNA endonuclease family | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-21
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 571 QRENLIGLLLGGLCIESDEKRKRHMIRFQF-NENSRMHSVL------------RRYLYD- 616
Q+E ++GLLLG IES +K R RF+F N +H R+
Sbjct: 1 QKEIIVGLLLGDGHIESRKKGTRISFRFEFKNYEYILHVYEKLLGYCTSNPPPRKPTRGN 60
Query: 617 ---------QYHEWLHPSFK-----FWPKG-RLVIPKLIHRWLTPRALAYWFMYGG---H 658
+++ PSF F+ G + ++P LI +LTP ALAYW M G +
Sbjct: 61 KSGKSYISWEFNTRSLPSFNKLYELFYINGKKKIVPNLIEEYLTPLALAYWIMDDGGNKN 120
Query: 659 RTSVGDILLKLKVSSEGIALVFKTLKARS-LDCRVKKKGR--VFWIGFLGSNSTLFW 712
TS G + + E + + K LK + L+C +KK G + I + LF
Sbjct: 121 STSKGIKICTQSFTLEEVQFLIKLLKIKFNLECTIKKNGSSNKYRIYIPAKSMALFR 177
|
This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to pfam00961, the members of this family are also LAGLIDADG endonucleases. Length = 177 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 3/227 (1%)
Query: 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE 330
L + E + L + L +++ L K +
Sbjct: 35 LLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL 94
Query: 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390
E LL++ + G E+A + + L D + + A ++G++ ++LE++
Sbjct: 95 A-EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153
Query: 391 REMQE--RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448
+ E + A + LL E L+++ ++ + +NL +YL
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213
Query: 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495
LG ++ + + LE N L G E+A E
Sbjct: 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 761 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.69 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.6 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.49 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.41 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.33 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.33 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.33 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.26 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.26 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.25 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.19 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.16 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.12 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.07 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.04 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.01 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.97 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.95 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.86 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.84 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.78 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.77 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.76 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.76 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.75 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.67 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.65 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.55 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.53 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.48 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.47 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.46 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.32 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.32 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.32 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.31 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.29 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.29 | |
| PF03161 | 178 | LAGLIDADG_2: LAGLIDADG DNA endonuclease family; In | 98.28 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.25 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.21 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.16 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.13 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.11 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.07 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.03 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.03 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.93 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.89 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.86 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.86 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.74 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.71 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.68 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.65 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.57 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.51 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.41 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.35 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.17 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.92 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.88 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.72 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.69 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.62 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.62 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.59 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.52 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.32 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.24 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.22 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.21 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.98 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.55 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.49 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.47 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.42 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.1 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.99 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.96 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.77 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.51 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.45 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.44 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.37 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.63 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.61 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.51 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 93.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.05 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.25 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.19 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.98 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.62 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.51 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.69 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.68 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.57 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.26 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.06 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 89.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.38 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 88.98 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 88.85 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 88.59 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.57 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.27 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 87.8 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 87.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 86.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.0 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 85.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 85.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 85.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 85.62 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 84.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.37 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.9 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 81.72 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 80.88 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.76 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 80.48 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 80.44 | |
| PF14528 | 77 | LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2C | 80.18 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-71 Score=654.39 Aligned_cols=538 Identities=17% Similarity=0.157 Sum_probs=421.4
Q ss_pred hHHHhhcCCCchhhhhhccchh----HHHHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChh
Q 004324 88 GSEMRHLGEPVVEVIELEELPE----QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENE 161 (761)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~ 161 (761)
.+.+.+.+..+.+.++|++|+. .|+ .++..+++.+..+++..++..|... |+.||.+||+.+ +|++.+++.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCccchh
Confidence 4556677888999999999985 343 4677788999999999999887644 799999999998 899999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004324 162 TGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIY 241 (761)
Q Consensus 162 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~ 241 (761)
.+.++|..|.+.| +.||+.++|+||++|+++|++++|.++|++|+. ||.++||+||.+|+ +.|++++|+++|
T Consensus 205 ~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~---~~g~~~eAl~lf 276 (857)
T PLN03077 205 RGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYF---ENGECLEGLELF 276 (857)
T ss_pred hHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHH---hCCCHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999975 69999999999999 899999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHH------------------
Q 004324 242 NRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW------------------ 303 (761)
Q Consensus 242 ~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~------------------ 303 (761)
.+|.+. |+.||.+||+++|.+|++. |+++.|.+++..|.+.|+.||..+|+.++.
T Consensus 277 ~~M~~~-g~~Pd~~ty~~ll~a~~~~------g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 277 FTMREL-SVDPDLMTITSVISACELL------GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHc-CCCCChhHHHHHHHHHHhc------CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 999998 8999999999999999986 588888888888888888888888777663
Q ss_pred -----------HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004324 304 -----------LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372 (761)
Q Consensus 304 -----------~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 372 (761)
+.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+||+
T Consensus 350 ~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 356677778888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
||++|+++|++++|.++|++|.+ +|+++||++|.+|+++|+.++|..+|++|.. ++.||..||+++|.+|++.|.
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 99999999999999999998865 3677777777777777777777777777764 467777766665554444444
Q ss_pred HHHHHHHHHHHHh-CC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 453 HDRLHLAFSECLE-KC------------------------------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 453 ~~~a~~~~~~m~~-~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
++.+.+++..+.+ |+ .||..+||+||.+|++.|+.++|.++|++|.+.|
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444444433 33 5677777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCccChHHHHHHHHHHhhhhhhhc-ccccCCCchhhHHhHHHHH
Q 004324 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC-LKKYEIESAWMEKLDYVLSLNRKEVK-KPVSLNLSSEQRENLIGLL 579 (761)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l 579 (761)
+.||.+||+++|.+|++.|++++|.++|++|. +.|+.|+..+|..+..++......-+ ..+...++..||..+|++|
T Consensus 585 -~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 585 -VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred -CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 77777777777777777777777777777777 45666666655555444433322111 1111112234557777778
Q ss_pred hhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeeeCC
Q 004324 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGG 657 (761)
Q Consensus 580 l~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g 657 (761)
|++|+.+|+.+.|+.+.+ ++++|++..+|++++++|+..|+|++|.+ +...|.++|+.++.-..|+-+++
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~--------vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR--------VRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH--------HHHHHHHcCCCCCCCccEEEECC
Confidence 877777777777777766 77777777777777777777666665554 24555556666665555555554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=607.79 Aligned_cols=537 Identities=12% Similarity=0.088 Sum_probs=463.3
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004324 113 RAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYM 190 (761)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 190 (761)
...+..+++.+...++..+++.|...+ -+.|+..++..+ .|.+.|.++.|+.+|+.|.. ||..+|+.+|.+|
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHH
Confidence 345667788899999999999886542 245677777655 88899999999999998853 7999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCC
Q 004324 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG 270 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~ 270 (761)
++.|+++.|.++|++|.+.|+.||..+||+||.+|+ +.|++++|.++|++|.+. |+.||.+||+++|.+|++.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~--- 520 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---KSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARA--- 520 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC---
Confidence 999999999999999999999999999999999999 899999999999999998 8999999999999999987
Q ss_pred CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCh
Q 004324 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ--AGFEEGKEVLLSVLRVCAKEGDV 348 (761)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~ 348 (761)
|++++|.++|++|.+.|+.||..+|+.++ .+|++.|++++|.++|++|.. .|+.||.++|+++|.+|++.|++
T Consensus 521 ---G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI--~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 521 ---GQVAKAFGAYGIMRSKNVKPDRVVFNALI--SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred ---cCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 69999999999999999999999999999 889999999999999999986 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 349 EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428 (761)
Q Consensus 349 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 428 (761)
++|.++|+.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH
Q 004324 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507 (761)
Q Consensus 429 ~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~ 507 (761)
.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ++.||..+||+||.+|++.|++++|.++|++|...| +.||.
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~ 754 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNT 754 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCH
Confidence 9999999999999999999999999999999999987 999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHh-hhhhhhcccccCCCchhhHHhHHHHHhhhhhhh
Q 004324 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS-LNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE 586 (761)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 586 (761)
.||+++|.+|++.|++++|.++|++|.+.|+.|+..++..+..+.. ...+... . . .....|+. .......
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~----l--~--~~v~~f~~-g~~~~~n 825 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA----L--G--EPVVSFDS-GRPQIEN 825 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh----h--h--hhhhhhhc-ccccccc
Confidence 9999999999999999999999999999999999888776642211 0111111 0 0 00122211 1111122
Q ss_pred hhhhHHHHHHH----hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeeeCCcccCC
Q 004324 587 SDEKRKRHMIR----FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSV 662 (761)
Q Consensus 587 g~~~~a~~~~~----~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~ 662 (761)
+..++|..+++ .++.|+..++ ..+...+.+.+.+.. +..++.+|...+..|+..+|+++|+|+++
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~-~~vL~cl~~~~~~~~--------~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-- 894 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVL-SQVLGCLQLPHDATL--------RNRLIENLGISADSQKQSNLSTLVDGFGE-- 894 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhcccccHHH--------HHHHHHHhccCCCCcchhhhHHHHHhhcc--
Confidence 33456777766 6778887744 444444444443333 33457777778889999999999999753
Q ss_pred CcEEEEeccCHHHHHHHHHHHhhcCCceeEeecCc
Q 004324 663 GDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGR 697 (761)
Q Consensus 663 ~~~~~~~~g~~~e~~~l~~~m~~~gl~~~~~~~~~ 697 (761)
..++|..++++|...|+.|++.....
T Consensus 895 ---------~~~~A~~l~~em~~~Gi~p~~~~~~~ 920 (1060)
T PLN03218 895 ---------YDPRAFSLLEEAASLGVVPSVSFKKS 920 (1060)
T ss_pred ---------ChHHHHHHHHHHHHcCCCCCcccccC
Confidence 24789999999999999999986555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=610.92 Aligned_cols=524 Identities=14% Similarity=0.113 Sum_probs=463.2
Q ss_pred CcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004324 144 QEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (761)
Q Consensus 144 p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~l 221 (761)
++.-.|..+ .|++.|+++.|+++|++|.+.|.++++..+++.++.+|++.|.+++|.++|+.|+. ||..+||.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 344445544 77799999999999999999997788999999999999999999999999999975 899999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 004324 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGL 301 (761)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 301 (761)
|.+|+ +.|++++|.++|++|.+. |+.||.++|+++|.+|++. |++++|.++|++|.+.|+.||..+|+.+
T Consensus 444 L~a~~---k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~------G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 444 MSVCA---SSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKS------GKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhC------cCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999 799999999999999998 8999999999999999986 6999999999999999999999999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHH
Q 004324 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE--SDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 302 i~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~ 379 (761)
+ .+|++.|++++|.++|++|.+.|+.||.+||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 514 I--~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 514 I--DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred H--HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 8 89999999999999999999999999999999999999999999999999999986 6789999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
+|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 460 FSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 460 ~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
|++|.+ |+.||..+|++||.+|+++|++++|.++|++|.+.| +.||..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999998 999999999999999999999999999999999999 999999999999999999999999999999998887
Q ss_pred ccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH----hhccccchhhHHHHHHH
Q 004324 539 EIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMHSVLRRYL 614 (761)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~l~p~~~~~~~~l~~~ 614 (761)
.|+ ..+|++|+.+|++.|++++|.++++ .++.|+.. .|..+..+
T Consensus 751 ~Pd-------------------------------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~-tynsLIgl 798 (1060)
T PLN03218 751 CPN-------------------------------TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV-MCRCITGL 798 (1060)
T ss_pred CCC-------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 665 7789999999999999999999988 56677655 55556666
Q ss_pred H----HhhhhccCCC-----------CccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHHH
Q 004324 615 Y----DQYHEWLHPS-----------FKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALV 679 (761)
Q Consensus 615 ~----~~~g~~~~a~-----------~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l 679 (761)
| .+++...++. ..+..+|..+|++|++.|+.||.+||+.++++++. .+..+.+..+
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---------~~~~~~~~~m 869 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL---------PHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---------cccHHHHHHH
Confidence 3 4444432221 13446688899999999999999999999977766 6778888888
Q ss_pred HHHHhhcCCceeEeecCcEEEEE--EeCCCHHHHHHhhccccchhhhh
Q 004324 680 FKTLKARSLDCRVKKKGRVFWIG--FLGSNSTLFWKLIEPYVLDELKE 725 (761)
Q Consensus 680 ~~~m~~~gl~~~~~~~~~~~~i~--i~~~~~~~~~~li~~~~~~~m~~ 725 (761)
++.|...+..+........+.-+ ........+.++.+-.++|++.+
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCccc
Confidence 88887666554432222111100 11233455556666667777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=601.44 Aligned_cols=516 Identities=17% Similarity=0.165 Sum_probs=418.6
Q ss_pred HHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 004324 114 AKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG 191 (761)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 191 (761)
.+|..+++.+...++..++..|...+ ++.||..||+.+ +|++.++++.|.++|..|.+.| +.||..+||.|+++|+
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~-~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHh
Confidence 55777777888888888888776432 467888888887 7888888888888888888888 8888888888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCC
Q 004324 192 KERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGL 271 (761)
Q Consensus 192 ~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~ 271 (761)
++|++++|+++|++|++ ||.++||++|.+|+ +.|++++|+++|++|.+. |+.||..||+.+|.+|++.
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~---~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~---- 237 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLV---DAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGL---- 237 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHH---HCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcC----
Confidence 88888889888888865 68888899988888 788888888888888887 7888888888888888876
Q ss_pred chhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004324 272 SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 351 (761)
|.++.+.+++..+.+.|+.||..+++.++ .+|++.|++++|.++|++|. .+|.++||++|.+|++.|++++|
T Consensus 238 --~~~~~~~~l~~~~~~~g~~~d~~~~n~Li--~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 238 --GSARAGQQLHCCVLKTGVVGDTFVSCALI--DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred --CcHHHHHHHHHHHHHhCCCccceeHHHHH--HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHH
Confidence 48888888888888888888888888887 78888888888888888885 35888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
.++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888888885
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 432 g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
.||..+||+||.+|++.|+.++|.++|++|.+ |+.||..||+++|.+|++.|.+++|.++|+.|.+...+.|+..+|
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 36888888888888888888888888888887 888888888888888888888888888888887642388888888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhh
Q 004324 511 NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEK 590 (761)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 590 (761)
++||.+|++.|++++|.+++++|. + . |+..+|++||.+|+.+|+++
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~---~--~-----------------------------p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAP---F--K-----------------------------PTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCC---C--C-----------------------------CCHHHHHHHHHHHHHcCCcH
Confidence 888888888888888888887662 2 2 23677999999999999999
Q ss_pred HHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEE
Q 004324 591 RKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLK 668 (761)
Q Consensus 591 ~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~ 668 (761)
.|+.+++ ++++|++...|++++++|++.
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~-------------------------------------------------- 541 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSS-------------------------------------------------- 541 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhC--------------------------------------------------
Confidence 9998887 778888777888888888774
Q ss_pred eccCHHHHHHHHHHHhhcCCc----eeEeecCcEEEEEEeCCCH------------HHHHHhhccccchhhhhcccCCCc
Q 004324 669 LKVSSEGIALVFKTLKARSLD----CRVKKKGRVFWIGFLGSNS------------TLFWKLIEPYVLDELKEDLLNEGS 732 (761)
Q Consensus 669 ~~g~~~e~~~l~~~m~~~gl~----~~~~~~~~~~~i~i~~~~~------------~~~~~li~~~~~~~m~~~~~~~~~ 732 (761)
|.|++|.++++.|+++|+. ++|+..++..+.++.++.. +...++.+..+.|+..+.++..++
T Consensus 542 --G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~ 619 (697)
T PLN03081 542 --GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619 (697)
T ss_pred --CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH
Confidence 4555555566666555554 5555555555666655433 223334455567777777777777
Q ss_pred ccccccccc
Q 004324 733 EYRKLDTQN 741 (761)
Q Consensus 733 ~~~~~~~~~ 741 (761)
+++|..+.+
T Consensus 620 ~~~~~~~~~ 628 (697)
T PLN03081 620 DEEKVSGRY 628 (697)
T ss_pred HHHHHHHHh
Confidence 777766677
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=611.35 Aligned_cols=572 Identities=12% Similarity=0.057 Sum_probs=465.4
Q ss_pred HHhhcCCCchhhhhhccchhH------H-HHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCCh
Q 004324 90 EMRHLGEPVVEVIELEELPEQ------W-RRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIREN 160 (761)
Q Consensus 90 ~~~~l~~~~~~~~~~~~~~~~------~-~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~ 160 (761)
.+.+.+..+.+..+|+.++.. . ...++....+.+....+..++..+... +..++...++.+ .|++.|++
T Consensus 60 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~n~li~~~~~~g~~ 137 (857)
T PLN03077 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGEL 137 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHhCCCh
Confidence 333444444555555554320 0 023344444455555555555554433 456777777776 67788888
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSI 240 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l 240 (761)
+.|+++|+.|. .+|+.+||++|.+|++.|++++|.++|++|...|+.||.+||+++|.+|+ +.++++.+.++
T Consensus 138 ~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~---~~~~~~~~~~~ 209 (857)
T PLN03077 138 VHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG---GIPDLARGREV 209 (857)
T ss_pred HHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC---CccchhhHHHH
Confidence 88888888884 35777888888888888888888888888888888888888888888887 67888888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHH
Q 004324 241 YNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320 (761)
Q Consensus 241 ~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~ 320 (761)
+.+|.+. |+.||..+||++|.+|++. |++++|.++|++|.. ||..+|+.++ .+|++.|+.++|+++|
T Consensus 210 ~~~~~~~-g~~~~~~~~n~Li~~y~k~------g~~~~A~~lf~~m~~----~d~~s~n~li--~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 210 HAHVVRF-GFELDVDVVNALITMYVKC------GDVVSARLVFDRMPR----RDCISWNAMI--SGYFENGECLEGLELF 276 (857)
T ss_pred HHHHHHc-CCCcccchHhHHHHHHhcC------CCHHHHHHHHhcCCC----CCcchhHHHH--HHHHhCCCHHHHHHHH
Confidence 8888877 7888888888888888875 589999999999863 5667777777 8899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 004324 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400 (761)
Q Consensus 321 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 400 (761)
++|.+.|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|.. |
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 352 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K 352 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLE 479 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~ 479 (761)
|.++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|+++.|.++++.|.+ |+.|+..+||+||+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhh-----
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSL----- 554 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l----- 554 (761)
+|+++|++++|.++|++|.+ ||.++|++||.+|+++|+.++|+++|++|.+ ++.|+..++..+..+..-
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999975 4788999999999999999999999999985 688888887665443321
Q ss_pred -hhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhccccchhhHHHHHHHHHhhhhccCCCCccccCCc
Q 004324 555 -NRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGR 633 (761)
Q Consensus 555 -~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~ 633 (761)
++......... ...+|..++++|+.+|++.|+++.|.++++.. +.+...|+.++..|++.|+.++|..
T Consensus 507 ~~~~i~~~~~~~--g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~------- 575 (857)
T PLN03077 507 CGKEIHAHVLRT--GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVE------- 575 (857)
T ss_pred HhHHHHHHHHHh--CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHH-------
Confidence 22222111112 22345888999999999999999999888833 4456688889999999888777665
Q ss_pred ccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHHh-hcCCceeEeecCcEEEEEEeCCCHHHHH
Q 004324 634 LVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLK-ARSLDCRVKKKGRVFWIGFLGSNSTLFW 712 (761)
Q Consensus 634 ~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m~-~~gl~~~~~~~~~~~~i~i~~~~~~~~~ 712 (761)
+|.+|++.|+.||.+||+++|.+|.+ .|.++++.++++.|. ++|+.|++.........+......+.-.
T Consensus 576 -lf~~M~~~g~~Pd~~T~~~ll~a~~~---------~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 576 -LFNRMVESGVNPDEVTFISLLCACSR---------SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred -HHHHHHHcCCCCCcccHHHHHHHHhh---------cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 69999999999999999999999998 899999999999997 7899998754433333333444444444
Q ss_pred Hhh
Q 004324 713 KLI 715 (761)
Q Consensus 713 ~li 715 (761)
+++
T Consensus 646 ~~~ 648 (857)
T PLN03077 646 NFI 648 (857)
T ss_pred HHH
Confidence 444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=531.98 Aligned_cols=450 Identities=15% Similarity=0.158 Sum_probs=414.4
Q ss_pred cCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004324 142 LRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (761)
Q Consensus 142 ~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~ 219 (761)
.+++..+++.+ .+.+.|++++|+++|++|...+.+.||..+|++++.+|++.++++.|.+++..|.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34455556555 7889999999999999999876688999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHH
Q 004324 220 ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (761)
Q Consensus 220 ~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (761)
++|.+|+ +.|++++|.++|++|.+ ||.++||++|.+|++. |++++|.++|++|.+.|+.|+..+|+
T Consensus 163 ~Li~~y~---k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~------g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 163 RVLLMHV---KCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDA------GNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHHHHh---cCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHC------cCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 9999999 89999999999999953 8999999999999987 69999999999999999999999999
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
.++ .++++.|..+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ +|+++||+||.+|++
T Consensus 229 ~ll--~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~ 302 (697)
T PLN03081 229 VML--RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYAL 302 (697)
T ss_pred HHH--HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHh
Confidence 888 88899999999999999999999999999999999999999999999999999964 588999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK-KY 538 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 538 (761)
|++|. .||..+||+||.+|++.|+.++|.++|++|.+.| +.||.+||+++|.+|++.|++++|.++|+.|.+. |+
T Consensus 383 f~~m~---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRMP---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhCC---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 99997 6899999999999999999999999999999999 9999999999999999999999999999999852 44
Q ss_pred ccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH-hhccccchhhHHHHHHHHHh
Q 004324 539 EIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQ 617 (761)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~ 617 (761)
.|+ ..+|+.++.++++.|++++|.++++ ....|+.. .|..|.+.|..
T Consensus 459 ~p~-------------------------------~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~-~~~~Ll~a~~~ 506 (697)
T PLN03081 459 KPR-------------------------------AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN-MWAALLTACRI 506 (697)
T ss_pred CCC-------------------------------ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHH
Confidence 333 6779999999999999999999998 66677654 68889999999
Q ss_pred hhhccCCCCccccCCcccchhhhhhccCcc-ceeeeeeeCC
Q 004324 618 YHEWLHPSFKFWPKGRLVIPKLIHRWLTPR-ALAYWFMYGG 657 (761)
Q Consensus 618 ~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd-~~ty~~li~g 657 (761)
.|+++.|.. ++++++ ++.|+ ..+|..|+++
T Consensus 507 ~g~~~~a~~--------~~~~l~--~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 507 HKNLELGRL--------AAEKLY--GMGPEKLNNYVVLLNL 537 (697)
T ss_pred cCCcHHHHH--------HHHHHh--CCCCCCCcchHHHHHH
Confidence 988777665 366665 45664 5688777775
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-25 Score=265.67 Aligned_cols=493 Identities=14% Similarity=0.052 Sum_probs=312.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|.++|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.... +...+..++..+. +.|
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~---~~~ 445 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYL---RSG 445 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHH---hcC
Confidence 5556666777777776666653 345556666666666666666666666666654322 2234444555565 567
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
++++|+.++.++... ..++..++..+...+... |++++|...|+++.+.... +...+..+ +..+...|+
T Consensus 446 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~-~~~~~~~l--a~~~~~~g~ 514 (899)
T TIGR02917 446 QFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGK------GDLAKAREAFEKALSIEPD-FFPAAANL--ARIDIQEGN 514 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCCC-cHHHHHHH--HHHHHHCCC
Confidence 777777777776653 344555666666666554 4777777777777665432 22223223 255666777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
+++|...|+++.... ..+..++..+...+.+.|+.++|..+++++.+.+.. +...+..++..|.+.|++++|..++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776653 235666777777777777777777777777666532 456666777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
+.+. .+.+..+|..+..+|...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+..+.+..
T Consensus 593 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 593 AADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 7654 34466677777777777777777777777777643 334566777777777777777777777777765556677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
+|..++..+...|++++|.++++.+...+ +++...+..+...+.+.|++++|.+.|+++.+.+ |++..+..+..++
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 77777777777777777777777777764 4566677777777777777777777777777543 3333333332222
Q ss_pred hh-hh-----hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCC
Q 004324 553 SL-NR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHP 624 (761)
Q Consensus 553 ~l-~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a 624 (761)
.. ++ +.+...+. ..| .+..++..+...|...|+.++|...++ +...|+++..+..++.+|...|+ .+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH
Confidence 11 11 00000000 011 124455555555666666666666665 45556555555555555555555 332
Q ss_pred CC--------------------------ccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHH
Q 004324 625 SF--------------------------KFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIAL 678 (761)
Q Consensus 625 ~~--------------------------~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~ 678 (761)
.. +.+.+|.+.++++++.+.. +..+|..+...+.. .|..++|..
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~ 892 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLA---------TGRKAEARK 892 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH---------cCCHHHHHH
Confidence 22 3445555678888887655 77788888888888 899999999
Q ss_pred HHHHHh
Q 004324 679 VFKTLK 684 (761)
Q Consensus 679 l~~~m~ 684 (761)
+++.|.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 998874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-23 Score=251.96 Aligned_cols=506 Identities=14% Similarity=0.100 Sum_probs=390.0
Q ss_pred HHHhhcCCCchhhhhhccc----hh--HHHHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcc--hhhhh-HHHhccCC
Q 004324 89 SEMRHLGEPVVEVIELEEL----PE--QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQED--GTYLA-VHCMRIRE 159 (761)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~~----~~--~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~--~t~~~-~~~~~~~~ 159 (761)
......+..+.+.+.|+.. |. .....+-..+...+....+...+...... .|+. ..+.. ..+.+.|+
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL----DPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh----CCcchhhHHHHHHHHHhcCC
Confidence 3444455666666666543 21 11112222233455556565555544322 2322 22222 27778999
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACS 239 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~ 239 (761)
++.|.++++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+...+..+...+. +.|++++|.+
T Consensus 447 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~---~~g~~~~A~~ 520 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDI---QEGNPDDAIQ 520 (899)
T ss_pred HHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH---HCCCHHHHHH
Confidence 999999999998864 66888999999999999999999999999987643 25667888888888 7999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHH
Q 004324 240 IYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLL 319 (761)
Q Consensus 240 l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l 319 (761)
.|+++.+. ...+..++..+...+.+. |+.++|..+++++.+.+.. +...+.. .+..+...|++++|..+
T Consensus 521 ~~~~~~~~--~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~-~~~~~~~--l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 521 RFEKVLTI--DPKNLRAILALAGLYLRT------GNEEEAVAWLEKAAELNPQ-EIEPALA--LAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcc-chhHHHH--HHHHHHHCCCHHHHHHH
Confidence 99999875 344666777777777764 5999999999999877643 3333333 34778889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004324 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 320 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (761)
++.+.... ..+..+|..+..+|.+.|++++|...|+.+.+.... +...+..+...|.+.|++++|..+|+++.+. .+
T Consensus 590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 666 (899)
T TIGR02917 590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALEL-KP 666 (899)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC
Confidence 99998753 457788999999999999999999999999887643 6678889999999999999999999999875 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
.+..+|..++..+...|++++|..+++.+.+.+ ..+...+..+...|.+.|++++|.+.|..+.+. .|+..++..++.
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCchHHHHHHH
Confidence 468889999999999999999999999999876 556788889999999999999999999998863 344578888999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhh--
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK-- 557 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~-- 557 (761)
+|.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.. ..++..+..++.+......
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999999874 6678899999999999999999999999999643 3455555555443322111
Q ss_pred ---hhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 558 ---EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 558 ---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.+++.+.. .|+ +..++..+...+...|+.++|...++ +.+.|.++..+..++.+|.+.|++++|..
T Consensus 822 A~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 822 ALEYAEKALKL--APN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHHhh--CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 11111111 111 35667778888899999999999998 88899999999999999999999888876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-18 Score=187.82 Aligned_cols=234 Identities=13% Similarity=0.083 Sum_probs=193.7
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHH
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAFVYKMEAYAK 379 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~ 379 (761)
+..+...|++++|..+|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..|..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 356667778888888888877642 345778889999999999999999999999887654322 245667888899
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+-.....+++.++.+|++.|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998753 3346678888899999999999999999998864222356788999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHc
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~ 536 (761)
++.+.+. .|+...+..++..|.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++|..++++|.++
T Consensus 272 l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9998863 466677799999999999999999999999886 4899999999988775 56999999999999999
Q ss_pred CCccChH
Q 004324 537 KYEIESA 543 (761)
Q Consensus 537 g~~~~~~ 543 (761)
++.++|+
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 9888887
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-16 Score=190.15 Aligned_cols=370 Identities=9% Similarity=0.001 Sum_probs=205.7
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH------------
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-PTPAFV------------ 371 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~------------ 371 (761)
..+...|++++|+..|++..+.. .-+..++..+..+|.+.|++++|...|++..+..... ....|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44566788888888888887652 1256777888888888888888888888888765432 112221
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
.+...+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 12345677888888888888887752 3355667777888888888888888888888743 223444444444442 22
Q ss_pred CHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 452 MHDRLHLAFSECLEKC---------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
+.++|..+++.+.... .-....+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 3444444443322100 0001122333444445555555555555555432 1233344445555555555
Q ss_pred HHHHHHHHHHHHHcCCccChHHHHHHHH--------------------------------------HHhhhhhhhc----
Q 004324 523 FVKAEKIYDLMCLKKYEIESAWMEKLDY--------------------------------------VLSLNRKEVK---- 560 (761)
Q Consensus 523 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~--------------------------------------~~~l~~~~~~---- 560 (761)
+++|+..++++.+.. .-++...-.+.. .+.+++....
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555554311 112211100000 0000000000
Q ss_pred ---ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC---------
Q 004324 561 ---KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF--------- 626 (761)
Q Consensus 561 ---~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~--------- 626 (761)
.......+. +...+..|...+...|+.++|+..++ +.+.|+++..+..++.+|...|++++|..
T Consensus 590 ~eA~~~l~~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 590 AEAEALLRQQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHhCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 000000111 23345556666778888888888887 77788888888888888888888887765
Q ss_pred -----------------ccccCCcccchhhhhhccCccc-----eeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHH-
Q 004324 627 -----------------KFWPKGRLVIPKLIHRWLTPRA-----LAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTL- 683 (761)
Q Consensus 627 -----------------~~~~~a~~~~~~m~~~g~~Pd~-----~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m- 683 (761)
+...+|.+++++.+........ ..+.-+-..+.. .|..++|...++.-
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~---------~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ---------TGQPQQALETYKDAM 738 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Confidence 3445555667776654322111 122111122233 78888888887766
Q ss_pred hhcCCceeE
Q 004324 684 KARSLDCRV 692 (761)
Q Consensus 684 ~~~gl~~~~ 692 (761)
...|+.|..
T Consensus 739 ~~~~~~~~~ 747 (1157)
T PRK11447 739 VASGITPTR 747 (1157)
T ss_pred hhcCCCCCC
Confidence 455666543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=180.28 Aligned_cols=305 Identities=12% Similarity=0.142 Sum_probs=206.5
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS---EMTFHILIVAYLSAP 229 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd---~~~~~~li~~~~~~~ 229 (761)
.....|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...|..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--- 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--- 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 4456678888888888888765 55667788888888888888888888888877532221 245677777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
+.|++++|+.+|+++.+. -.++..+++.+...+... |++++|...++.+.+.+..+....
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~------------ 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVE------------ 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHH------------
Confidence 678888888888888763 234566677777776664 477777777777765543221100
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (761)
....+..+...+.+.|++++|.+.++++.+.... +...+..+...|.+.|++++|.++
T Consensus 179 ---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 179 ---------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred ---------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0112344555666777777777777777665432 345666677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004324 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (761)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (761)
|+++.+.+......+++.++.+|++.|++++|...++.+.+. .|+...+..++..|.+.|++++|..++.++.+. .|
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P 313 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HP 313 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-Cc
Confidence 777765432222345677777777777777777777777764 355556677777777778888888877776653 57
Q ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCCHH
Q 004324 470 NRTIYGIYLESLKN---AGNIEKAEEIFNHMHSDQTIGVNTR 508 (761)
Q Consensus 470 ~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~p~~~ 508 (761)
+..+++.++..+.. .|+.++|..+|++|.+++ +.|+..
T Consensus 314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~ 354 (389)
T PRK11788 314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-LKRKPR 354 (389)
T ss_pred CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-HhCCCC
Confidence 77777777777664 457778888888887766 555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-17 Score=167.66 Aligned_cols=444 Identities=12% Similarity=0.070 Sum_probs=351.3
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
.....+++...+--...++.. +.-..+|+.+.+.+-..|++.+|+.+++.|.+.... .+..|-.+-.++. ..|+
T Consensus 92 ~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~---~~~~ 165 (966)
T KOG4626|consen 92 FFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALV---TQGD 165 (966)
T ss_pred hhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHH---hcCC
Confidence 334445555444444444443 456778999999999999999999999999986332 5678999999999 7999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCH
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK 313 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~ 313 (761)
.+.|.+.|.+..+ +.|+.+...+-+..+.+.. |++.+|..-+-+.++....- ...++-| ...+-..|+.
T Consensus 166 ~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~-----Grl~ea~~cYlkAi~~qp~f-AiawsnL--g~~f~~~Gei 234 (966)
T KOG4626|consen 166 LELAVQCFFEALQ---LNPDLYCARSDLGNLLKAE-----GRLEEAKACYLKAIETQPCF-AIAWSNL--GCVFNAQGEI 234 (966)
T ss_pred CcccHHHHHHHHh---cCcchhhhhcchhHHHHhh-----cccchhHHHHHHHHhhCCce-eeeehhc--chHHhhcchH
Confidence 9999999999987 5799888877777777765 58999999988887655321 1122222 2556678899
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 314 ERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
-.|+..|++..+. .|+ ...|-.|-..|...+.++.|..-+.+.....+. ..+++..|...|-..|.++-|+..+++
T Consensus 235 ~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHH
Confidence 9999999988764 555 457888999999999999999988887765432 467788888899999999999999999
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004324 393 MQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470 (761)
Q Consensus 393 m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~ 470 (761)
..+. .|+ ...|+.|..++-..|++.+|...+...... .|+ ..+.+.|...|...|.+++|..+|....+-.+--
T Consensus 312 al~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 312 ALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF 387 (966)
T ss_pred HHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh
Confidence 8875 454 568999999999999999999999998884 444 5688999999999999999999999988754555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 549 (761)
...+|.|...|-+.|++++|...+++..+ |.|+ ..+|+.+-..|-..|+++.|++.+.+.+. ++|..
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~----~nPt~----- 455 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ----INPTF----- 455 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh----cCcHH-----
Confidence 67899999999999999999999999987 5676 47999999999999999999999999885 67765
Q ss_pred HHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCc
Q 004324 550 YVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFK 627 (761)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~ 627 (761)
.-..+.|.+.+...|++.+|+..++ +.++|+.+.+|-.+.....--.+|.+-.+
T Consensus 456 -----------------------AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~- 511 (966)
T KOG4626|consen 456 -----------------------AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK- 511 (966)
T ss_pred -----------------------HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH-
Confidence 6678889999999999999999999 99999999999888888877778877443
Q ss_pred cccCCcccchhhhhhccCccceeeeeeeCC
Q 004324 628 FWPKGRLVIPKLIHRWLTPRALAYWFMYGG 657 (761)
Q Consensus 628 ~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g 657 (761)
++++-..++++-++++.-|.+.-+-+|+--
T Consensus 512 ~~~kl~sivrdql~~~rlpsvhP~hsm~yp 541 (966)
T KOG4626|consen 512 RMKKLVSIVRDQLEKNRLPSVHPHHSMLYP 541 (966)
T ss_pred HHHHHHHHHHHHHhhhcCCccCcccccccc
Confidence 122222234444444455666655555433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-14 Score=177.20 Aligned_cols=482 Identities=11% Similarity=-0.009 Sum_probs=273.6
Q ss_pred HhhcCCccchhhHHHHHHhhhcccCCcchhh----hhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 004324 119 LCKELPSHKGGTLVRILNAQKKWLRQEDGTY----LAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKER 194 (761)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~----~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 194 (761)
+...+..++|...++.+... .|+.... ........++.++|.+.++.+.+.. +.+...+..+...+.+.|
T Consensus 122 l~~~g~~~eA~~~~~~~l~~----~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNG----APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccC----CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccC
Confidence 45667777777766665432 2333322 2223345689999999999999885 667888889999999999
Q ss_pred ChhHHHHHHHHHHHCCC------------------CCC-HHHHHHH----------------------------------
Q 004324 195 KFAKCRDIFDDIINQGR------------------VPS-EMTFHIL---------------------------------- 221 (761)
Q Consensus 195 ~~~~A~~~f~~m~~~g~------------------~pd-~~~~~~l---------------------------------- 221 (761)
+.++|+..|+++..... .|+ ...+...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998865321 000 0011110
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH-HH--
Q 004324 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK-DI-- 297 (761)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~-~~-- 297 (761)
-..+. +.|++++|+..|++..+. .| +...+..+-..+.+. |++++|+..|++..+....... ..
T Consensus 276 G~~~~---~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~------g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 276 GLAAV---DSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQ------GDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHH---HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 11222 457777777777777653 34 344444444444443 4777777777777665533211 10
Q ss_pred --------HHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004324 298 --------YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPA 369 (761)
Q Consensus 298 --------~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 369 (761)
+..+.....+.+.|++++|...|++..... ..+...+..+..++...|++++|++.|+++.+.... +...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 111122344566777777777777776652 124455666667777777777777777777765432 3445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGS--------ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 441 (761)
+..+...|. .++.++|..+++.+....-. .....+..+...+...|++++|.+.+++.++.. +-+...+.
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~ 499 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTY 499 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 555555553 23455555555443221000 001123334455566777777777777777643 12345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--------------------
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-------------------- 501 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------- 501 (761)
.+...|.+.|++++|...++++.+..+.+...+..+...+...|+.++|...++.+....
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 677777777777777777777665333344433333333333444444444433321110
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhh------h
Q 004324 502 ------------------TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR------K 557 (761)
Q Consensus 502 ------------------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~------~ 557 (761)
..+++...+..+...+.+.|++++|++.|++..+.. +-+++..-.++.++.... +
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 023455566677778888888888888888888632 223444333333332111 1
Q ss_pred hhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccch------hhHHHHHHHHHhhhhccCCCC
Q 004324 558 EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR------MHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~------~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.++. .....|+ +..++..+..++...|+.++|.+.++ +...|+++ ..+..++.++...|++++|..
T Consensus 659 ~l~~--ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 659 QLAK--LPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHH--HhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 1111 1111111 24455556666777888888888888 44444433 234446788888888888886
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=162.83 Aligned_cols=414 Identities=13% Similarity=0.068 Sum_probs=325.8
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
.-+.|++..|.+....+-.+. +.+....-.+-..+....+.+....--..-.+.. .--..+|..+-..+- ..|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k---erg~ 131 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK---ERGQ 131 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH---Hhch
Confidence 337799999988776665554 3333333344455666777766554433333332 124678999999998 7899
Q ss_pred HHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 234 LDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
+++|+.+|+.|.+ ++|+-. .|..+-.++... |+.+.|.+.|.+.+..+ |+........ .......|+
T Consensus 132 ~~~al~~y~~aie---l~p~fida~inla~al~~~------~~~~~a~~~~~~alqln--P~l~ca~s~l-gnLlka~Gr 199 (966)
T KOG4626|consen 132 LQDALALYRAAIE---LKPKFIDAYINLAAALVTQ------GDLELAVQCFFEALQLN--PDLYCARSDL-GNLLKAEGR 199 (966)
T ss_pred HHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhc------CCCcccHHHHHHHHhcC--cchhhhhcch-hHHHHhhcc
Confidence 9999999999997 467654 444444445443 58999999999888765 3322221111 122344677
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
+++|...|.+..+. .|. .+.|+.|-..+-..|++..|.+-|++..+.++. =...|-.|-..|-..+.+++|+..+.
T Consensus 200 l~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 200 LEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred cchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHH
Confidence 88888888877664 343 457888888899999999999999999987654 25678889999999999999999998
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004324 392 EMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (761)
Q Consensus 392 ~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (761)
+.... +|+ .+.|..|...|-..|.++.|...+++.++. .|+ ...|+.|..++-..|++.+|.+.+.+.+.-++-
T Consensus 277 rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 277 RALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 77654 454 567888888899999999999999999884 565 679999999999999999999999999987777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
...+.+.|...|...|.+++|..+|....+- -|. ...++.|...|-+.|++++|+..+++.++ ++|..
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~f---- 421 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR----IKPTF---- 421 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----cCchH----
Confidence 8889999999999999999999999998884 355 56899999999999999999999999984 66664
Q ss_pred HHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
...|+.+-..+...|+...|.+.+. +.++|.-..++..|+.+|...|+..+|..
T Consensus 422 ------------------------Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 422 ------------------------ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ------------------------HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 6678888889999999999999988 89999999999999999999999888875
Q ss_pred c
Q 004324 627 K 627 (761)
Q Consensus 627 ~ 627 (761)
.
T Consensus 478 s 478 (966)
T KOG4626|consen 478 S 478 (966)
T ss_pred H
Confidence 3
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-14 Score=159.65 Aligned_cols=325 Identities=14% Similarity=0.090 Sum_probs=178.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|++.++...+.... +...|..+-.+|. ..|
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~---~lg 208 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD---GLG 208 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH---HcC
Confidence 455789999999999998875 456778888999999999999999999998876322 5667888888888 689
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cCHHHHHHHH--------
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLI-------- 302 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li-------- 302 (761)
++++|+.-|.......+..+. ....++..+.. ..+........+.... |.......+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~--~~~~~~~~~l~----------~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE--QSAQAVERLLK----------KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH--HHHHHHHHHHH----------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 999999988776654222221 11111111111 1111111111111100 1110000000
Q ss_pred -------------------H-H---HhhccCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004324 303 -------------------W-L---HSYQDNIDKERISLLKKEMQQAG-FEE-GKEVLLSVLRVCAKEGDVEDAEKTWLR 357 (761)
Q Consensus 303 -------------------~-~---~~~~~~g~~~~a~~l~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 357 (761)
. . .-....+++++|.+.|++....+ ..| +...++.+...+...|++++|...++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 0 00011234555555555555443 122 223444555555555666666666655
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004324 358 LLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437 (761)
Q Consensus 358 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 437 (761)
..+..+. ....|..+...|...|++++|...|++..+.. +-+...|..+...+...|++++|...|++.++.. +.+.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 5554322 23455555555555666666666665554431 2234455555555555666666666665555532 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
..+..+...|.+.|++++|...|+...+..+.+...|+.+...|...|++++|.+.|++...
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555555555556666666666555544444455555555556666666666666555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-14 Score=160.23 Aligned_cols=369 Identities=12% Similarity=0.010 Sum_probs=259.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|+++.|+.+++...... +-+......++......|++++|...|+++.+.... +...|..+...+. +.|
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~---~~g 124 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL---KSK 124 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH---HcC
Confidence 5668889999999988888875 334444555556666789999999999998876322 4556777777777 689
Q ss_pred CHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (761)
++++|+..|++..+ +.|+. ..+..+...+... |++++|...++.+......+. ..+..+ ..+...|
T Consensus 125 ~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~------g~~~eA~~~~~~~~~~~P~~~-~a~~~~---~~l~~~g 191 (656)
T PRK15174 125 QYATVADLAEQAWL---AFSGNSQIFALHLRTLVLM------DKELQAISLARTQAQEVPPRG-DMIATC---LSFLNKS 191 (656)
T ss_pred CHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCCH-HHHHHH---HHHHHcC
Confidence 99999999999886 34554 4455555555544 588999998888876654432 222222 2356678
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK----SL 387 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~ 387 (761)
++++|...++.+......++...+..+..++.+.|++++|.+.++.+.+..+. +...+..+...|.+.|+.++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 89999999988876643344555566677888999999999999998887644 57778888899999999886 78
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
..|++..... +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+.+.+..
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888887652 3356678888899999999999999999988753 2245667778888999999999999998887633
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSC----NIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~t~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
+.+...+..+..++...|+.++|.+.|++..+.. |+. ..| ..+-.++...+...+....+.++.-..-..+
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~---P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 425 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR---ASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIE 425 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---hhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCC
Confidence 3333445556778889999999999999887753 332 122 2222333333444444345555543333455
Q ss_pred hHHHH
Q 004324 542 SAWME 546 (761)
Q Consensus 542 ~~~~~ 546 (761)
++.++
T Consensus 426 ~~~~~ 430 (656)
T PRK15174 426 RDEWE 430 (656)
T ss_pred hHHHH
Confidence 55543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-14 Score=160.85 Aligned_cols=391 Identities=10% Similarity=0.033 Sum_probs=282.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHH
Q 004324 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFR 262 (761)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~ 262 (761)
......|.+.|++++|.+.|++..+. .|+...|..+-.+|. +.|++++|++.+....+. .|+. ..+..+-.
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~---~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~ 202 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHN---ALGDWEKVVEDTTAALEL---DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHH---HhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH
Confidence 34456678999999999999998874 678888999988998 799999999999999874 4654 45555555
Q ss_pred HHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC--CCCCHHHH-----
Q 004324 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG--FEEGKEVL----- 335 (761)
Q Consensus 263 ~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~----- 335 (761)
++... |++++|..-|......+...+......+. ..+. ..+.....+..+.. ..|.....
T Consensus 203 a~~~l------g~~~eA~~~~~~~~~~~~~~~~~~~~~~~--~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 203 AYDGL------GKYADALLDLTASCIIDGFRNEQSAQAVE--RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHc------CCHHHHHHHHHHHHHhCCCccHHHHHHHH--HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 55554 59999999887765443222211111111 0000 01111111111100 00000000
Q ss_pred ----------------------HHHHHH------HHhcCChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 004324 336 ----------------------LSVLRV------CAKEGDVEDAEKTWLRLLESD-NGI-PTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 336 ----------------------~~ll~~------~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~ 385 (761)
...+.. ....+++++|.+.|+...+.+ ..| ....|+.+...|...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 000111 123468999999999998865 223 45678888899999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 386 SLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
|+..|++..+. .|+ ..+|..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|...|++.+
T Consensus 350 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 350 ALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998875 344 5678888899999999999999999998863 3457889999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
+..+.+...|..+...+.+.|++++|+..|++..... +-+...|+.+...+...|++++|++.|++..+..-...+..
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 8667788899999999999999999999999998763 44678899999999999999999999999885321111100
Q ss_pred HHHHHHHHhhhhhhhcccccCCCchhhH-HhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhc
Q 004324 545 MEKLDYVLSLNRKEVKKPVSLNLSSEQR-ENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEW 621 (761)
Q Consensus 545 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~ 621 (761)
.+ ...++..+..+...|++++|...++ +.++|++...+..++.+|.+.|++
T Consensus 505 --------------------------~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 505 --------------------------MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred --------------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 00 1112222222344689999999988 788999988889999999999999
Q ss_pred cCCCC
Q 004324 622 LHPSF 626 (761)
Q Consensus 622 ~~a~~ 626 (761)
++|..
T Consensus 559 ~eAi~ 563 (615)
T TIGR00990 559 DEALK 563 (615)
T ss_pred HHHHH
Confidence 98885
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-14 Score=159.36 Aligned_cols=329 Identities=9% Similarity=0.057 Sum_probs=257.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-HH
Q 004324 185 KLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF-RA 263 (761)
Q Consensus 185 ~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll-~~ 263 (761)
-++..+.+.|++++|+.+++........+....++ +..+.. ..|++++|+..|+++... .|+.......+ ..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l---~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~ 119 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPL---ASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHh---hcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence 44566778999999999999998875543333444 444555 589999999999999974 57654444444 34
Q ss_pred HHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCA 343 (761)
Q Consensus 264 ~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 343 (761)
+... |++++|...+++..+.... +...+..+ +..+...|+.++|...++.+......+ ...+..+ ..+.
T Consensus 120 l~~~------g~~~~Ai~~l~~Al~l~P~-~~~a~~~l--a~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~ 188 (656)
T PRK15174 120 LLKS------KQYATVADLAEQAWLAFSG-NSQIFALH--LRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFL 188 (656)
T ss_pred HHHc------CCHHHHHHHHHHHHHhCCC-cHHHHHHH--HHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHH
Confidence 4443 5999999999999876532 23344444 367889999999999999887654332 2233333 4588
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETEL--- 420 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~--- 420 (761)
..|++++|..+++.+.+....++...+..+...+.+.|+.++|...|++..... +.+...+..+...|...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 999999999999998887644455566667788999999999999999998763 3467788889999999999986
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 421 -TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 421 -A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
|...|++..+.. +.+..++..+...+.+.|++++|...+++..+..+.+...+..+...|.+.|++++|...|+++..
T Consensus 268 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999998853 335778999999999999999999999999885566778889999999999999999999999998
Q ss_pred CCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 500 DQTIGVNTRS-CNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 500 ~g~~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+ |+... +..+..++...|+.++|...|++..+.
T Consensus 347 ~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 347 EK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 64 55433 444567899999999999999999864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-13 Score=160.27 Aligned_cols=355 Identities=9% Similarity=0.032 Sum_probs=157.2
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~ 234 (761)
...|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+... .+...+..+...+. +.|++
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~---~~g~~ 99 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLA---DAGQY 99 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH---HCCCH
Confidence 34555555555555555422 33444455555555555555555555555544311 12334444444444 45555
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHH
Q 004324 235 DEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKE 314 (761)
Q Consensus 235 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~ 314 (761)
++|+..+++..+. .|+...+..+-.++... |+.++|...++++.+.... +......+. ..+...+..+
T Consensus 100 ~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~------g~~~~Al~~l~~al~~~P~-~~~~~~~la--~~l~~~~~~e 167 (765)
T PRK10049 100 DEALVKAKQLVSG---APDKANLLALAYVYKRA------GRHWDELRAMTQALPRAPQ-TQQYPTEYV--QALRNNRLSA 167 (765)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHCCChH
Confidence 5555555555542 23222232222222222 3555555555555554432 122222222 2333445555
Q ss_pred HHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhC-CCCCCHH-HH----HHHH
Q 004324 315 RISLLKKEMQQAGFEEGK------EVLLSVLRVCA-----KEGDV---EDAEKTWLRLLES-DNGIPTP-AF----VYKM 374 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li 374 (761)
.|+..++.... .|+. .....++.... ..+++ ++|.+.++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 55555543321 1211 01111111111 11122 4455555555533 1111110 00 0112
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHh
Q 004324 375 EAYAKIGEFMKSLEIFREMQERLGS-AS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKP---LMPSYINLTNMYLN 449 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~li~~~~~ 449 (761)
.++...|+.++|+..|+.+.+.+.+ |+ ...+ +..+|...|++++|..+|+.+.+..-.. .......|..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 2333445556666666555554321 22 1111 3445555566666666555554422100 12234444445555
Q ss_pred cCCHHHHHHHHHHHHhCCC------------CC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCR------------PN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~------------p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li 514 (761)
.|++++|.++++.+.+..+ |+ ...+..+...+...|++++|+++++++... .+-+...+..+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA 400 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYA 400 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5666666655555554221 11 123344455555556666666666665554 233455555555
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~ 534 (761)
..+...|++++|++.+++..
T Consensus 401 ~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAE 420 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55556666666666666555
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-13 Score=130.63 Aligned_cols=351 Identities=14% Similarity=0.072 Sum_probs=259.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
.+.+..+|..||.++||--..+.|.+++.+-.....+.+..+||.+|.+-.. -...+++.+|.+. .+.||..
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-------~~~K~Lv~EMisq-km~Pnl~ 274 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-------SVGKKLVAEMISQ-KMTPNLF 274 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-------hccHHHHHHHHHh-hcCCchH
Confidence 3556789999999999999999999999999988788899999999987663 2227899999998 7999999
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH-HHHHHHHHH----HcCCCC
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER-ISLLKKEMQ----QAGFEE 330 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~-a~~l~~~m~----~~g~~p 330 (761)
|||++|.+.++. |... -....|.+++.+|.+.|+.|...+|..++ ..+++.++..+ |..+..++. .+.++|
T Consensus 275 TfNalL~c~akf-g~F~-~ar~aalqil~EmKeiGVePsLsSyh~ii--k~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 275 TFNALLSCAAKF-GKFE-DARKAALQILGEMKEIGVEPSLSSYHLII--KNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred hHHHHHHHHHHh-cchH-HHHHHHHHHHHHHHHhCCCcchhhHHHHH--HHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999988775 2111 13446778899999999999999999888 56777776643 444444433 333444
Q ss_pred ----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004324 331 ----GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD----NGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 331 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (761)
|..-|.+.+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+....+.-+..|+.|.-+-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 45567789999999999999999997665432 2222 233556888999999999999999999988888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHHHHHH-
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MH--------DR-----LHLAFSECL- 464 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g-~~--------~~-----a~~~~~~m~- 464 (761)
|+..+...++.+....|.++-.-+++..++..|...+...-.-++..+|+.. +. .. |..+++...
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999886555555555555555543 11 00 111111111
Q ss_pred -----hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 465 -----EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN---IILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 465 -----~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~---~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
+...-.....+...-.+.+.|+.++|.++|....+++.--|-.-..| -++.+-.+......|..+++-|...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 02234455667777888999999999999998866553223333344 5556667788888899998888765
Q ss_pred CC
Q 004324 537 KY 538 (761)
Q Consensus 537 g~ 538 (761)
++
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 44
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-12 Score=153.10 Aligned_cols=376 Identities=11% Similarity=0.037 Sum_probs=276.4
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+...|++++|.++++..++.. +.+...+..+...+.+.|++++|...+++..+... .+.. |..+...+. +.|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~---~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYK---RAG 130 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHH---HCC
Confidence 7889999999999999999874 66777888999999999999999999999988632 2445 777777777 799
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHH
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLH-NSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK------DIYSGLIWLH 305 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~-~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~ 305 (761)
+.++|+..++++.+. .|+.... ..+...+.. . |..+.|...++.... .|+. ......+.+.
T Consensus 131 ~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~-~-----~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 131 RHWDELRAMTQALPR---APQTQQYPTEYVQALRN-N-----RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH-C-----CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 999999999999974 4655443 333334433 2 488889988876653 2221 1111122111
Q ss_pred h---hccCCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHH
Q 004324 306 S---YQDNIDK---ERISLLKKEMQQA-GFEEGKE-VL----LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPTPAFVY 372 (761)
Q Consensus 306 ~---~~~~g~~---~~a~~l~~~m~~~-g~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ 372 (761)
. ....+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|...|+.+.+.+.. |+. .-..
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHH
Confidence 1 1122233 7788888888864 2333321 11 11244556789999999999999988643 332 2233
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC--
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSA---SVPAYHKIIELLCKAEETELTESLMKEFVETG-----------MKPL-- 436 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~pd-- 436 (761)
+...|...|++++|+.+|+++....-.. ....+..+..++.+.|++++|.++++.+.... -.|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5779999999999999999987642111 13456677778999999999999999998752 1233
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 004324 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (761)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~ 515 (761)
...+..+...+...|++++|.++++++....+.+...+..+...+...|++++|++.+++..... +-+...+..+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~ 435 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHH
Confidence 23556778889999999999999999998778889999999999999999999999999999864 334677778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
.+.+.|++++|+.+++++++. .|+......+....
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 899999999999999999963 34444445554444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-12 Score=146.13 Aligned_cols=357 Identities=8% Similarity=-0.031 Sum_probs=212.9
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK-ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQ 231 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~ 231 (761)
.+...++++.|..++..+.+.+ +.+......|-..|.. .++ ++|..++.... +-|...+.++...|. +.
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi---~~ 260 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALA---YR 260 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHH---HC
Confidence 7778999999999999999997 4456667777778877 466 88888866432 248889999999999 79
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCC----CC--------------------CchhhHHHHHHHHHHHH
Q 004324 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKP----GG--------------------LSKYYLQQAEFIFHNLL 287 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~----g~--------------------~~~g~~~~A~~~~~~m~ 287 (761)
|+.++|.++++++....--.|+..++--++.-..... .. ..++.++-++++.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 336 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL---- 336 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh----
Confidence 9999999999998754222344444433332221110 00 0012233222221
Q ss_pred HcCCCcCHHHHHHHHHH----------------------------------HhhccCCCHHHHHHHHHHHHHc-C-CCCC
Q 004324 288 TSGLEIQKDIYSGLIWL----------------------------------HSYQDNIDKERISLLKKEMQQA-G-FEEG 331 (761)
Q Consensus 288 ~~~~~p~~~~~~~li~~----------------------------------~~~~~~g~~~~a~~l~~~m~~~-g-~~p~ 331 (761)
++.|.... ..... .-..+.|+.++|..+|+..... + -.++
T Consensus 337 --~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 337 --ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred --cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 11111111 11111 1123456667777777665541 1 2223
Q ss_pred HHHHHHHHHHHHhcCChHH---HHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHHcCC
Q 004324 332 KEVLLSVLRVCAKEGDVED---AEKT----------------------WLRLLES-DN-GI--PTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~---a~~~----------------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~ 382 (761)
.....-++..|.+.+.+.. +..+ .+..... +. .+ +...|..+..++.. |+
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 4444466666666555222 2111 1111111 11 12 45566666666665 67
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.++|...|.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.
T Consensus 492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777766666554 255443333344445778888888888776543 34445556666777777888888888877
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+..+.+...+..+...+.+.|++++|...|++..+.. |+...|..+...+.+.|++++|+..|++..+
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776333444444444444445588888888888877643 6777777777778888888888888887775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-12 Score=125.72 Aligned_cols=316 Identities=14% Similarity=0.143 Sum_probs=240.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--hcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG--KERKFA-KCRDIFDDIINQGRVPSEMTFHILIVAYLSAP 229 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~ 229 (761)
-....|.+..+.-+++.|...| .+.+..+--.|+..-+ ...++- .-++.|-.|.+.|-. +..+|
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----------- 190 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----------- 190 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----------
Confidence 5557788888999999999888 6777666655554432 333333 335677778777643 44455
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
+.|.+.+ ++-+. ..-+..||.++|.++|+-. ..+.|.+++.+-.+...+.+..+++.+|-+..|..
T Consensus 191 K~G~vAd---L~~E~-----~PKT~et~s~mI~Gl~K~~------~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 191 KSGAVAD---LLFET-----LPKTDETVSIMIAGLCKFS------SLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ccccHHH---HHHhh-----cCCCchhHHHHHHHHHHHH------hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 5666655 33333 2234578999999999874 89999999999998888999999999997777655
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA----EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 385 (761)
. .+++.+|....+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 257 ~------K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 257 G------KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred c------HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 4 58899999999999999999999999999998765 5788999999999999999999999999988754
Q ss_pred -HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHh
Q 004324 386 -SLEIFREMQE----RLGSA----SVPAYHKIIELLCKAEETELTESLMKEFVET----GMKPL---MPSYINLTNMYLN 449 (761)
Q Consensus 386 -A~~~~~~m~~----~g~~p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd---~~t~~~li~~~~~ 449 (761)
|..++.++.. +-++| |..-|-+.+..|.+..+.+.|.++..-+... -+.|+ .+-|..+..+.|.
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 5555555543 22222 4455778888888999999999887766531 13333 2346677888888
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 450 LGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
....+.-..+++.|.- -.-|+..+-..++.+....|+++-.-+++.+|+.-|
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 8888888889988875 567888888888888888888888888888887766
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-12 Score=148.42 Aligned_cols=462 Identities=10% Similarity=0.038 Sum_probs=244.1
Q ss_pred CCccchhhHHHHHHhhhcccCCcchhh-hhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 004324 123 LPSHKGGTLVRILNAQKKWLRQEDGTY-LAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKC 199 (761)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~p~~~t~-~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 199 (761)
|....+...++.... +.|+.... ..+ .+...|++++|+...+...+.. +.|...+..+. ..+++++|
T Consensus 58 Gd~~~A~~~l~~Al~----~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La----~i~~~~kA 127 (987)
T PRK09782 58 NDEATAIREFEYIHQ----QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLA----AIPVEVKS 127 (987)
T ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHH----HhccChhH
Confidence 455555555554432 44544221 111 6667778888888888777764 44555555442 22777778
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH------HhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCc
Q 004324 200 RDIFDDIINQGRVPS-EMTFHILIVA------YLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272 (761)
Q Consensus 200 ~~~f~~m~~~g~~pd-~~~~~~li~~------~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~ 272 (761)
..+++++.+.. |+ ...+..+... + .-.+.++|.+.++ .... ...|+..+....+.-+....
T Consensus 128 ~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l----~y~q~eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~l---- 195 (987)
T PRK09782 128 VTTVEELLAQQ--KACDAVPTLRCRSEVGQNAL----RLAQLPVARAQLN-DATF-AASPEGKTLRTDLLQRAIYL---- 195 (987)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHhhccchh----hhhhHHHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHHH----
Confidence 88888877753 33 2222222222 2 1457777777777 3332 23334555555556666544
Q ss_pred hhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004324 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD-NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 351 (761)
|++++|+.++.++.+.+... ..-...+- ..|.. .++ +++..+++. .++-|...+..+...|.+.|+.++|
T Consensus 196 -~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~--~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 196 -KQWSQADTLYNEARQQNTLS-AAERRQWF--DVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred -hCHHHHHHHHHHHHhcCCCC-HHHHHHHH--HHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 47888888888888877543 22222222 24444 244 666666443 3335777888888889999999999
Q ss_pred HHHHHHHHhCCCC-CCHHHH--H----------------------------HHHHHHHHc--------------------
Q 004324 352 EKTWLRLLESDNG-IPTPAF--V----------------------------YKMEAYAKI-------------------- 380 (761)
Q Consensus 352 ~~~~~~m~~~g~~-~~~~~~--~----------------------------~li~~~~~~-------------------- 380 (761)
.++++++...... |...+| + .++..+.+.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLE 346 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHH
Confidence 9888887654221 111111 0 012222222
Q ss_pred -------------------------------------------CChHHHHHHHHHHHH-c-CCCCCHHHHHHHHHHHHhc
Q 004324 381 -------------------------------------------GEFMKSLEIFREMQE-R-LGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 381 -------------------------------------------g~~~~A~~~~~~m~~-~-g~~p~~~t~~~li~~~~~~ 415 (761)
|+.++|..+|+.... . ...++...-+-++..|.+.
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 333333333333322 0 0111222333445555554
Q ss_pred CC---HHHHHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004324 416 EE---TELTESL----------------------MKEFVE-TGM-KP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (761)
Q Consensus 416 g~---~~~A~~l----------------------~~~m~~-~g~-~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (761)
+. ..+|..+ ...... .+. .+ +...|..+..++.. ++.++|...+.+....
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 44 2222222 111111 111 22 45566666666655 6777777766666542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCh-HHH
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES-AWM 545 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~ 545 (761)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|..++++.++.. |+. ...
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~ 579 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALY 579 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHH
Confidence 244333333344445677777777777776543 3455556666667777777777777777776532 211 111
Q ss_pred HHHHHHH-hhhh-----hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHh
Q 004324 546 EKLDYVL-SLNR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQ 617 (761)
Q Consensus 546 ~~~~~~~-~l~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~ 617 (761)
..+.... ..++ ..+.. .....| +...|..+...+.+.|+.++|+..++ +.++|++...+..++.++..
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~--AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTR--SLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH--HHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1111100 0011 00001 111122 24456666666777777777777766 66677777677777777777
Q ss_pred hhhccCCCC
Q 004324 618 YHEWLHPSF 626 (761)
Q Consensus 618 ~g~~~~a~~ 626 (761)
.|++++|..
T Consensus 656 ~G~~eeAi~ 664 (987)
T PRK09782 656 SGDIAQSRE 664 (987)
T ss_pred CCCHHHHHH
Confidence 666666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-11 Score=138.48 Aligned_cols=397 Identities=10% Similarity=0.007 Sum_probs=207.0
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHhcC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDF-ALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL---IVAYLSA 228 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~l---i~~~~~~ 228 (761)
...+.|+++.|+..|+...+.. +.+. .++ .++..+...|+.++|+.++++... |+...+..+ ...|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~-- 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYR-- 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHH--
Confidence 4446666666666666666543 2221 222 555555566666666666666552 222222222 22333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhh
Q 004324 229 PVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (761)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (761)
..|++++|+++|+++.+. .|+. ..+..+...+... |+.++|+..+..+.... |+...+ +..++.+
T Consensus 114 -~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~------~q~~eAl~~l~~l~~~d--p~~~~~--l~layL~ 179 (822)
T PRK14574 114 -NEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADA------GRGGVVLKQATELAERD--PTVQNY--MTLSYLN 179 (822)
T ss_pred -HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhc------CCHHHHHHHHHHhcccC--cchHHH--HHHHHHH
Confidence 346666666666666553 2322 2222333333332 35666666666655443 222222 2223444
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH--------------------------------
Q 004324 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW-------------------------------- 355 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~-------------------------------- 355 (761)
...++..+|++.++++.... .-+...+..++.+..+.|-...|.++.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 34444444666666665542 113344444445555444444444333
Q ss_pred ----------------HHHHhC-CCCCCH-HHH----HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 356 ----------------LRLLES-DNGIPT-PAF----VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 356 ----------------~~m~~~-g~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
+.+... +..|.. ..| --.+-++.+.|+..++++.|+.|...|.+....+--++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 222221 111211 111 1234556666777777777777776665434445566677777
Q ss_pred hcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCH-HH
Q 004324 414 KAEETELTESLMKEFVETG-----MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--------------PNR-TI 473 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------p~~-~~ 473 (761)
..+++++|..+++.+.... ..++......|.-+|...+++++|..+++.+.+..+ ||- ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 7777777777777765532 122333345666777777777777777777665211 111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHh
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS 553 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~ 553 (761)
+..++..+...|++.+|++.++++.... |-|......+...+...|.+.+|++.++.... . +|+
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l--~P~---------- 482 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVES--L--APR---------- 482 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h--CCc----------
Confidence 3344555666777777777777776653 44666666777777777777777777755442 1 222
Q ss_pred hhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhh
Q 004324 554 LNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (761)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~ 607 (761)
+..+...........+++..|+.+.+ .+..|++...
T Consensus 483 ------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 483 ------------------SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred ------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 12333344445555677777777776 6667776643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-10 Score=133.02 Aligned_cols=365 Identities=9% Similarity=0.031 Sum_probs=244.7
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+...|+++.|.++++.+.+.. +.+..++..++..|...++.++|++.++++... .|+...+-.+ ++... ..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l--ayL~~-~~~ 183 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL--SYLNR-ATD 183 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH--HHHHH-hcc
Confidence 4445577777777777777764 445566666667777777777777777776654 3444444222 33311 235
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHh
Q 004324 233 CLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQ-----KDIYSGLIWLHS 306 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~ 306 (761)
+..+|++.++++.+. .|+ ...+..++.++.+. |-...|.++..+-...-...+ .+.....+....
T Consensus 184 ~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~------~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 184 RNYDALQASSEAVRL---APTSEEVLKNHLEILQRN------RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc------CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence 555577777777764 353 33334444444443 244455544433211000000 001111111000
Q ss_pred -h--ccCCC---HHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004324 307 -Y--QDNID---KERISLLKKEMQQA-GFEEGK-----EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (761)
Q Consensus 307 -~--~~~g~---~~~a~~l~~~m~~~-g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 374 (761)
. ....+ .+.|+.-++.+... +-.|.. ....-.+-++...|++.++.+.++.|...+......+--++.
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0 01111 34555556665542 222422 222355678889999999999999999998765667888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCC
Q 004324 375 EAYAKIGEFMKSLEIFREMQERL-----GSASVPAYHKIIELLCKAEETELTESLMKEFVETG-------------MKPL 436 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd 436 (761)
++|...+++++|..+|+++.... ..++......|.-+|...+++++|..+++.+.+.- ..||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999986542 23355556889999999999999999999999831 1123
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 004324 437 M-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (761)
Q Consensus 437 ~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~ 515 (761)
- ..+..++..+.-.|++.+|++.++++....+-|......+.+.+...|++.+|+++++...... +-+..+......
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA--PRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--CccHHHHHHHHH
Confidence 2 3345567778899999999999999998888999999999999999999999999997776653 335677788888
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (761)
++...|++.+|..+.+...+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999985
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-09 Score=118.77 Aligned_cols=496 Identities=13% Similarity=0.075 Sum_probs=300.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCCCCCHHHH
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ--GRVPSEMTFHILIVAYLSAPVQGCLDEA 237 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--g~~pd~~~~~~li~~~~~~~~~g~~~~A 237 (761)
.+.|.+.|..+.+.. ++|+...-.-.......|++..|+.+|...... ...||+..- +-.++. +.|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~---kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFW---KLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHH---hccchhhH
Confidence 588888899888885 667665555555556778999999999985543 455665321 113444 78999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHH
Q 004324 238 CSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERIS 317 (761)
Q Consensus 238 ~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~ 317 (761)
+..|....+ +.|+.+.-...|.-+...... ...+..|..++...-..+.. ++++.+.|. .-+.-.|++..+.
T Consensus 219 ~~a~~ralq---Ldp~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~-nP~~l~~LA--n~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 219 LLAFERALQ---LDPTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNE-NPVALNHLA--NHFYFKKDYERVW 290 (1018)
T ss_pred HHHHHHHHh---cChhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCC-CcHHHHHHH--HHHhhcccHHHHH
Confidence 999999887 457544433333322221110 02566777777766444322 345555554 5566678899999
Q ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 318 LLKKEMQQAGFEE--GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 318 ~l~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
.+...+...-..- -...|--+.++|-..|++++|.+.|.+..+....--+..+--|..+|.+.|+++.|...|+...+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 8888877653111 12346678888999999999999988777765332234445578999999999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----h-C
Q 004324 396 RLGSASVPAYHKIIELLCKAE----ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL----E-K 466 (761)
Q Consensus 396 ~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~----~-~ 466 (761)
. .+-+..|.-.|-..|+..+ ..+.|..++.+..+.- .-|...|..+..+|....-+.. +.++.... . +
T Consensus 371 ~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 371 Q-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG 447 (1018)
T ss_pred h-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC
Confidence 5 2334556666666666654 4567777777666643 4467778777777766544433 55555543 2 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ--TIG------VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~~------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
-.+.+...|.+...+...|.+++|...|......- ... ++..+--.+...+-..++.+.|.+.|..+..
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--- 524 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--- 524 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH---
Confidence 45778889999999999999999999998876651 011 2322333445556677889999999999985
Q ss_pred ccChHHHHHHHHHHhhhhhhhc-------ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH----hhccccchhh
Q 004324 539 EIESAWMEKLDYVLSLNRKEVK-------KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMH 607 (761)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~l~p~~~~~ 607 (761)
-.|..+..+....++.+.-.. ....+.... .|..+|+-+...+.....+..|..-+. ....-.++-.
T Consensus 525 -ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 525 -EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred -HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 345544544443333321000 001111111 123333323223334444444544333 1111133344
Q ss_pred HHHHHHHHHhh-hhccC---CCCccccCCcccchhhhhhccCccceeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHH
Q 004324 608 SVLRRYLYDQY-HEWLH---PSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTL 683 (761)
Q Consensus 608 ~~~l~~~~~~~-g~~~~---a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m 683 (761)
.+.|+|+|.+. +++.. .......+|++++.+.+...+. +.++..+=.++.+..|.+.+|..+|.+.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk----------N~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK----------NMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc----------hhhhccchhhhhhhccCchHHHHHHHHH
Confidence 55678866543 22211 1224555666666666544221 2333333344566689999999999999
Q ss_pred hhcCC
Q 004324 684 KARSL 688 (761)
Q Consensus 684 ~~~gl 688 (761)
+..+-
T Consensus 673 rEa~~ 677 (1018)
T KOG2002|consen 673 REATS 677 (1018)
T ss_pred HHHHh
Confidence 76543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-09 Score=117.78 Aligned_cols=500 Identities=10% Similarity=0.039 Sum_probs=330.7
Q ss_pred CCcchhhhhH-HHh--ccCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004324 143 RQEDGTYLAV-HCM--RIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTF 218 (761)
Q Consensus 143 ~p~~~t~~~~-~~~--~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~ 218 (761)
.|+.+-+.+- +|. ..+++..|+.+|....... ...+|+.+. +-.++.++|+.+.|+..|.+..+. |+..-
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqL----dp~~v 233 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQL----DPTCV 233 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhc----ChhhH
Confidence 4666655554 443 6789999999999966543 256666553 346778999999999999999886 33333
Q ss_pred HHHHHH--HhcC-CCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH
Q 004324 219 HILIVA--YLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK 295 (761)
Q Consensus 219 ~~li~~--~~~~-~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~ 295 (761)
++++.- +..+ .....+..++.++...-...+-.|+ ..+.|-+-+... |++..+..+...+......-..
T Consensus 234 ~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~--~l~~LAn~fyfK------~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 234 SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPV--ALNHLANHFYFK------KDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcH--HHHHHHHHHhhc------ccHHHHHHHHHHHHHhhhhhHH
Confidence 333332 1110 1234567777777777654444444 444555555554 5999999999988765533223
Q ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004324 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV--LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373 (761)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 373 (761)
-.-+.+-++.++...|++++|...|.+-.+. .||.++ +--|...|.+.|+++.+...|+.+.+..+. +..+...|
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iL 382 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 3333445568999999999999999776654 555544 447888999999999999999999987643 55667777
Q ss_pred HHHHHHcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Q 004324 374 MEAYAKIG----EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV----ETGMKPLMPSYINLTN 445 (761)
Q Consensus 374 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~pd~~t~~~li~ 445 (761)
...|+..+ ..+.|..++.+..+.- +.|...|-.+-..+-.. ++..++..|.... ..+-.+.....|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 77777765 5577777777766652 44677787666666554 4444466665544 4566678899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH-HHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEK----CRPNR------TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC-NIIL 514 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~----~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~-~~li 514 (761)
.+...|+++.|...|...... ..+|. .+--.+...+-..++.+.|.+.+..+.... |+-+.. .-+.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~ 537 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLG 537 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhh
Confidence 999999999999999998753 22333 233334556666789999999999999874 665433 3333
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhh--hccc---ccCCCchhhHHhHHHHHhhhhh-----
Q 004324 515 SAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKE--VKKP---VSLNLSSEQRENLIGLLLGGLC----- 584 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~--~~~~---~~~~~~~~~~~~~~~~ll~~~~----- 584 (761)
......+...+|...++.... .-.-+|+....++.......+. .+.. ...+....+|..+.-+|.+-|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~-~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALN-IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHh-cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 233345778899999999985 5667777766665322211110 0000 0001111134555556665442
Q ss_pred -------hhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceeeeeee
Q 004324 585 -------IESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMY 655 (761)
Q Consensus 585 -------~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li 655 (761)
..+..+.|.+++. +..+|.+..+-+-++.+++..|+|.+|.. +|.+..+.+- -+.-+|.-+-
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~d--------IFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARD--------IFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHH--------HHHHHHHHHh-hCCceeeeHH
Confidence 2245677888877 88899998888889999999988887776 5777776644 2233344444
Q ss_pred CCcccCCCcEEEEeccCHHHHHHHHHHH
Q 004324 656 GGHRTSVGDILLKLKVSSEGIALVFKTL 683 (761)
Q Consensus 656 ~g~~~~~~~~~~~~~g~~~e~~~l~~~m 683 (761)
++|.. .|.+-.|.++++.-
T Consensus 688 h~~~e---------~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 688 HCYVE---------QGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHH---------HHHHHHHHHHHHHH
Confidence 55555 67777777777665
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-10 Score=119.14 Aligned_cols=285 Identities=9% Similarity=0.021 Sum_probs=213.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-cCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV-SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~-~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
.|++++|.+.+....+. .++...+ .++.+.. ... |+.+.|...+.++.+.. |+......+.....+..
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~-~llaA~aA~~~-----g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVN-YLLAAEAAQQR-----GDEARANQHLERAAELA--DNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHH-HHHHHHHHHHC-----CCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHH
Confidence 58888888777776543 1222222 3333322 333 48888999888887644 44444443333466778
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCC
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-------PAFVYKMEAYAKIGE 382 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~ 382 (761)
.|+.+.|...++++.+... -+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++....+..+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999999887652 25677888999999999999999999999988765322 233444444445555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 66667777766543 3457778889999999999999999999999884 455421 233444456899999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+..+-|...+.++...+.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98877888889999999999999999999999999985 59999999999999999999999999997753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-07 Score=99.86 Aligned_cols=442 Identities=12% Similarity=0.059 Sum_probs=325.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHhcC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDD----IINQGRVPSEMTFHILIVAYLSA 228 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~----m~~~g~~pd~~~~~~li~~~~~~ 228 (761)
++++..-++.|..++....+. ++.+..+|.+-...=-.+|.++...++.++ +...|+..+...|-.=..+|-
T Consensus 415 AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e-- 490 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE-- 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh--
Confidence 556667777788888777766 677777777766666777777777777664 344567777777766666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 004324 229 PVQGCLDEACSIYNRMIQLGGYQPR--PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS 306 (761)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~p~--~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 306 (761)
+.|.+--+..+....+.- |+.-. ..||+..-..|.+. +.++-|..+|...++.... +..++.... ..
T Consensus 491 -~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~------~~~~carAVya~alqvfp~-k~slWlra~--~~ 559 (913)
T KOG0495|consen 491 -DAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKR------PAIECARAVYAHALQVFPC-KKSLWLRAA--MF 559 (913)
T ss_pred -hcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhc------chHHHHHHHHHHHHhhccc-hhHHHHHHH--HH
Confidence 567777777777777655 44332 24566666666654 3788888888877765432 233333333 55
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
--..|..+....+|++.... +.-....|-....-+-..|++..|+.++....+..+. +...|-+-+..-..+..++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH
Confidence 56677889999999998875 3334566667777788899999999999999988765 788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
..+|.+.... .|+...|..-+..---.++.++|.+++++.++. -|+ ...|..+...+-+.++++.|...|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999988764 567777776666666788999999999998884 344 45777888889999999999999998888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHH
Q 004324 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (761)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 545 (761)
.|+-.+..|-.|.+.=-+.|.+-.|..+|++..-++ +-|...|...|..=.+.|+.+.|..+..+.++. + |+..
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c-p~sg-- 787 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C-PSSG-- 787 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-Cccc--
Confidence 888888999999999999999999999999998886 568899999999999999999999999888863 2 2222
Q ss_pred HHHHHHHhhhh----hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 546 EKLDYVLSLNR----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 546 ~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
..+.+++-+.. +.....-.-+ .+.|..+.-++...+....+++.|+.-+. ..++|++..++..+-..+.+.|
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 12233222211 0000000001 11234555556666777888999998887 8889999989888888888888
Q ss_pred hccC
Q 004324 620 EWLH 623 (761)
Q Consensus 620 ~~~~ 623 (761)
.-++
T Consensus 866 ~eed 869 (913)
T KOG0495|consen 866 TEED 869 (913)
T ss_pred CHHH
Confidence 5443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-09 Score=105.10 Aligned_cols=416 Identities=12% Similarity=0.106 Sum_probs=222.0
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHH----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCC
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFAL----ATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSAP 229 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-~~~~li~~~~~~~ 229 (761)
.+.+.+..|.++++-...+- ...+..+ .+.+--.+.+.|.+++|..-|+...+. .||.. .||..|.+||
T Consensus 248 ~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~--- 321 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA--- 321 (840)
T ss_pred eehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee---
Confidence 35667788888887777653 2222222 222223355789999999999998775 57765 4888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHH-----HHcCCCCCchhhHHHHHHHHHHHHHcCCCc
Q 004324 230 VQGCLDEACSIYNRMIQLGG-----------YQPRPSLHNSLFRA-----LVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g-----------~~p~~~t~~~ll~~-----~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p 293 (761)
-|+-++..+.|.+|..-.| -.|+....|-.|+. .-+.. +.+.+++.-.--.++.--+.|
T Consensus 322 -i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~----ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 322 -IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN----KADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred -cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh----hhhHHHHHHHHHHHhcccccc
Confidence 7999999999999986522 12333333333322 11110 012222222222222222222
Q ss_pred CHHH-HHHHH------------------HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChHHHH
Q 004324 294 QKDI-YSGLI------------------WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLS--VLRVCAKEGDVEDAE 352 (761)
Q Consensus 294 ~~~~-~~~li------------------~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~ 352 (761)
+-.. +.|-+ ...-+.++|+++.|.++++.+.+..-+.-...-+. ++...---.++..|.
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 2100 11111 12335677888888888877766532222222222 222222233445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 353 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
+.-+.....+- -+....+.--..-..+|++++|.+.+++.....-.-....||.= -.+-..|++++|++.|-++..-
T Consensus 477 qyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i- 553 (840)
T KOG2003|consen 477 QYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI- 553 (840)
T ss_pred HHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-
Confidence 54444332210 01111111111222346677777777766654111111122211 1244556677777666555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
+..+.....-+.+.|....+..+|.+++.+...-++.|+...+-|.+.|-+.|+-.+|.+..-+--+- ++-|..|..-
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iew 631 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEW 631 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHH
Confidence 12345555566666666666677777666665556666666777777777777777766665554433 4556666666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhh-hhhhhhhH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGL-CIESDEKR 591 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~ 591 (761)
|..-|....-+++|+.+|++..- +. |+.+-|..++..| ++.|++.+
T Consensus 632 l~ayyidtqf~ekai~y~ekaal----iq-----------------------------p~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAAL----IQ-----------------------------PNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh----cC-----------------------------ccHHHHHHHHHHHHHhcccHHH
Confidence 66666666666777777766541 11 2255576666555 45677777
Q ss_pred HHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 592 KRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 592 a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
|...++ ...-|.+....-.|+.++...|
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 777776 3334555555555555554444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-09 Score=113.62 Aligned_cols=288 Identities=9% Similarity=0.021 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
..|+++.|.+.+.+..+. .|+...+-.+..-.+... |+.+.|...+.+..+....+. ....+.....+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~-----g~~~~A~~~l~~a~~~~p~~~--l~~~~~~a~l~l~ 165 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQR-----GDEARANQHLEEAAELAGNDN--ILVEIARTRILLA 165 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCcCc--hHHHHHHHHHHHH
Confidence 379999999999887653 466544444433333333 599999999999876553332 2222222356677
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCChHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YKMEAY---AKIGEFMK 385 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~ 385 (761)
.|+++.|...++.+.+.... +..++..+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999987522 5678889999999999999999999999998754 333332 111222 33333344
Q ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH--HhcCCHHHHHHH
Q 004324 386 SLEIFREMQERL---GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY-INLTNMY--LNLGMHDRLHLA 459 (761)
Q Consensus 386 A~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~li~~~--~~~g~~~~a~~~ 459 (761)
+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+ ...++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 444555555432 11377888899999999999999999999999864 333211 1133333 345778888888
Q ss_pred HHHHHhCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--hhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 460 FSECLEKCRPNR--TIYGIYLESLKNAGNIEKAEEIFNH--MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 460 ~~~m~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~--m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
++...+..+-|. ....++...|.+.|++++|.+.|+. ..+ ..|+...+..+...+.+.|+.++|.+++++-.
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877555555 7778999999999999999999995 544 45899999999999999999999999999865
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-10 Score=119.25 Aligned_cols=500 Identities=13% Similarity=0.062 Sum_probs=283.1
Q ss_pred hhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 004324 138 QKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE 215 (761)
Q Consensus 138 ~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~ 215 (761)
+..|+.|+.+||..+ .++..|+.+.|- +|..|.-.. .+.+..+++.++......++.+.|. .|..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 445899999999887 777899999888 999999887 8889999999999999999888876 5788
Q ss_pred HHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhc---CCCCCCHHHHHHHHHHHHcCCCC--------CchhhHHHHHH
Q 004324 216 MTFHILIVAYLSAPVQGCLDE---ACSIYNRMIQL---GGYQPRPSLHNSLFRALVSKPGG--------LSKYYLQQAEF 281 (761)
Q Consensus 216 ~~~~~li~~~~~~~~~g~~~~---A~~l~~~m~~~---~g~~p~~~t~~~ll~~~~~~~g~--------~~~g~~~~A~~ 281 (761)
.||+.|+.+|. +.|++.. +.+.+...... .|+.--..-|-..|++|-+.... +-+|.++.+.+
T Consensus 84 Dtyt~Ll~ayr---~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYR---IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHH---hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999 7888655 22222222211 12222222222222222111000 00135555555
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004324 282 IFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES 361 (761)
Q Consensus 282 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 361 (761)
+...+......-.... ++ -..-..+-.+++...+-+...+ .|+..+|.+++.+-...|+++.|..++.+|.+.
T Consensus 161 ll~~~Pvsa~~~p~~v---fL-rqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQV---FL-RQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHhhCCcccccchHHH---HH-HHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5544422211111111 11 0111122223333333222222 589999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 362 DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441 (761)
Q Consensus 362 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 441 (761)
|+..+.+-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+.--+-.+..+|....+. .| .+....++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~-sq~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EG-SQLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cc-cchhhhhh
Confidence 998887766666666 8889999999999999999999999988888887776633332 22 22222222
Q ss_pred HHHHHHHhcC-----CHHH--HHHHHHHHHh----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC-CHH
Q 004324 442 NLTNMYLNLG-----MHDR--LHLAFSECLE----KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-TIGV-NTR 508 (761)
Q Consensus 442 ~li~~~~~~g-----~~~~--a~~~~~~m~~----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~p-~~~ 508 (761)
+-+..-+-.| .++. +.-+.....+ |+.....+|...+. ....|+-++..++-..|..-- .+.+ ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 2222222222 1111 1111111111 33333344444333 333677777777776664311 0122 344
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH--HHHHc--CC-------------ccChHH---------------------HHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYD--LMCLK--KY-------------EIESAW---------------------MEKLDY 550 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~--~m~~~--g~-------------~~~~~~---------------------~~~~~~ 550 (761)
.|..++.-|.+.-+......++. +.++. +. .|+... -+++..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 55555554443222111111111 11100 00 111111 000000
Q ss_pred -----HHhhhhhh--hc-ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhcccc-----chhhHHHHHHHHHh
Q 004324 551 -----VLSLNRKE--VK-KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNEN-----SRMHSVLRRYLYDQ 617 (761)
Q Consensus 551 -----~~~l~~~~--~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~p~-----~~~~~~~l~~~~~~ 617 (761)
.+.+.++. .+ .....+....--...|..|+.-|+.+..++.|.....--..|+ +...+.-+.+++.+
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 00000000 00 0000000000013557888888888888888887766111121 12245667788888
Q ss_pred hhhccCCCCccccCCcccchhhhhhccCcc--ceeeeeeeCCcccCCCcEEEEeccCHHHHHHHHHHHhhcCCce
Q 004324 618 YHEWLHPSFKFWPKGRLVIPKLIHRWLTPR--ALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDC 690 (761)
Q Consensus 618 ~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd--~~ty~~li~g~~~~~~~~~~~~~g~~~e~~~l~~~m~~~gl~~ 690 (761)
.+...++.. ++.+|.+.-...+ .++.|-|+++... .|..+.+.++.+.+...|+.-
T Consensus 541 ~~~l~dl~t--------iL~e~ks~a~n~~~~a~~~f~~lns~a~---------agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLST--------ILYEDKSSAENEPLVAIILFPLLNSGAP---------AGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHH--------HHhhhhHHhhCCchHHHHHHHHHhhhhh---------ccCHHHHHHHHHHHHHhhhhh
Confidence 777666654 4666655433334 6677888898888 899999999999999888874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-08 Score=110.06 Aligned_cols=323 Identities=16% Similarity=0.162 Sum_probs=206.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCch
Q 004324 194 RKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSK 273 (761)
Q Consensus 194 g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~ 273 (761)
|++++|.+++.+.++.... +...|-+|-..|- +.|+.++++..+-..-. ..|...-+-..+.-++...
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyE---qrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~~----- 220 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYE---QRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQL----- 220 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHH---HcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHhc-----
Confidence 6666666666666655322 4455666666665 45666666555444332 3444444444444444433
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVE 349 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~ 349 (761)
|.+++|.-.|.+.++....-+...+... ..|.+.|+...|+..|.++...-...| ....-.+++.+...++-+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers---~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERS---SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHH---HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3566666666666665544333333322 345566666777777766665422111 112234455566666667
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------------------------CCCCC
Q 004324 350 DAEKTWLRLLESD-NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER---------------------------LGSAS 401 (761)
Q Consensus 350 ~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~p~ 401 (761)
.|.+.++.....+ -..+...++.++..|.+...++.|......+..+ ++.++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 7777776665532 2234556777788888888888888777777652 22233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYL 478 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li 478 (761)
...+ -+.-++......+....+.....+..+ .-+...|.-+.++|...|++.+|..+|..+.. -..-+...|--+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 3331 223344455555555566666666653 33567899999999999999999999999986 3445688999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+|...|.+++|.+.|+...... +-+...-.+|-..+-+.|+.++|.+.+..|.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999998863 3344566667777889999999999999876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-12 Score=92.48 Aligned_cols=49 Identities=27% Similarity=0.481 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-12 Score=128.14 Aligned_cols=252 Identities=12% Similarity=0.110 Sum_probs=99.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESD-NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
.+-..+.+.|++++|.+++....... ..-+...|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556667788888888775443333 2234455555666666677788888888877765432 34455556655 677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.. ..+.+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887777665543 4555666777777788888888888888665 3456777888888888888888888888
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHH
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 573 (761)
+++..+.. |-|....+.++..+...|+.+++.++++...+.. |. |.
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~----~~----------------------------~~ 214 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA----PD----------------------------DP 214 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HT----------------------------SC
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----cC----------------------------HH
Confidence 88888864 3346778888888888888888888888777532 11 24
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 574 ~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..|..+..++...|+.+.|...++ ....|+++.....+++++...|+.++|..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456677777888888888888888 77788888888888888888888888876
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-08 Score=108.91 Aligned_cols=365 Identities=14% Similarity=0.049 Sum_probs=267.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..|++++|..++.+++++. +.+...|-+|...|-..|+..++...+-..-... +-|..-|-.+-.-.. +.|+++
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~---~~~~i~ 224 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE---QLGNIN 224 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH---hcccHH
Confidence 3499999999999999996 7788999999999999999999988764443322 226677888777777 799999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHH--HHHhhccCCCH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI--WLHSYQDNIDK 313 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~~~g~~ 313 (761)
+|.-.|.+.++. .|+..-|--==..++... |+...|..-|.++.......|-.-+-.++ .++.+...++.
T Consensus 225 qA~~cy~rAI~~---~p~n~~~~~ers~L~~~~-----G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 225 QARYCYSRAIQA---NPSNWELIYERSSLYQKT-----GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHHHHHHHhc---CCcchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999985 465544333223344444 59999999999998877643333333333 23556667777
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------------CC
Q 004324 314 ERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN---------------------------GI 365 (761)
Q Consensus 314 ~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~~ 365 (761)
+.|.+.++.....+ -..+...++.++..+.+...++.|......+..... .+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 88888888776632 234566788889999999999999888877776221 12
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERL--GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 443 (761)
+..+ .-++-++......+....+.....+.. +.-+...|.-+..+|.+.|++.+|+.+|..+......-+...|--+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 112233333333344444444444444 3334566888999999999999999999999987666678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSA 516 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------~~~p~~~t~~~li~~ 516 (761)
..+|...|..++|.+.|...+.-.+-+...--+|-..|-+.|+.++|.+.++.|..-+ ...|+...--.....
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 9999999999999999999997666777788888889999999999999999965322 155666666667778
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|+.++=+.....|+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8889998886666666654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-09 Score=113.79 Aligned_cols=279 Identities=13% Similarity=0.126 Sum_probs=211.6
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLL--SVLRVCAKEGDVEDA 351 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a 351 (761)
|+++.|++......+..-. ...+.++......+.|+.+.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 98 Gd~~~A~k~l~~~~~~~~~---p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQ---PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5999999888776554322 2333455556668999999999999999764 55554333 346788899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 004324 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-------PAYHKIIELLCKAEETELTESL 424 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~l 424 (761)
.+.++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999998865 6788889999999999999999999999988665332 1333444444444555666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 004324 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 425 ~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 504 (761)
++.+.+. .+.+......+...+...|+.++|.+++.+..+ ..|+... .++.+....++.+++.+..+...++. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--C
Confidence 6665432 345788899999999999999999999999886 3555522 23444456699999999999999874 4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhh
Q 004324 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLC 584 (761)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 584 (761)
-|...+.++...|.+.|++++|.+.|+.+.+. .|+ ...+..|...+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~-------------------------------~~~~~~La~~~~ 372 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD-------------------------------AYDYAWLADALD 372 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-------------------------------HHHHHHHHHHHH
Confidence 56677889999999999999999999999853 233 344556777788
Q ss_pred hhhhhhHHHHHHH
Q 004324 585 IESDEKRKRHMIR 597 (761)
Q Consensus 585 ~~g~~~~a~~~~~ 597 (761)
..|+.++|.+.++
T Consensus 373 ~~g~~~~A~~~~~ 385 (398)
T PRK10747 373 RLHKPEEAAAMRR 385 (398)
T ss_pred HcCCHHHHHHHHH
Confidence 8999999988887
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=127.26 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
+.|++++|++++.+-... ...|+...|..++..++... |+.+.|...++++...+.. +...+..++. +..
T Consensus 20 ~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~-----~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~---l~~ 89 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSL-----GDYDEAIEAYEKLLASDKA-NPQDYERLIQ---LLQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-cccccccccccccccccccc-----ccccccccccccccccccc-cccccccccc---ccc
Confidence 567777777777544332 11455555555555555443 3666666666666554432 2222222221 134
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
.+++++|..++.+..+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555554443321 334444555555555555555555555544322 22344455555555555555555555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.|++..+. .| |....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++..+..
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55555543 23 24444555555555555555555555544432 2222334444444444444444444444444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNH 496 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 496 (761)
+.|..+...+.+++.+.|+.++|.++..+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp TT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 33444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=91.42 Aligned_cols=50 Identities=32% Similarity=0.402 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-08 Score=103.38 Aligned_cols=286 Identities=9% Similarity=0.045 Sum_probs=200.8
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 004324 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYA 378 (761)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~ 378 (761)
.....++....+.+++..-.+.....|+.-+...-+-...+.-...++++|+.+|+++.+..+- -|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 3334555555567777777777777777666555555556666778888888888888887532 25667776543322
Q ss_pred HcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 379 KIGEFM-KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (761)
Q Consensus 379 ~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~ 457 (761)
.+.++. -|..++. -...+ ..|...+.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.
T Consensus 311 ~~skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 221111 1222221 11122 3566667777778888888888888888754 223567777788888888888888
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
.-++..++-++.|-..|-.|..+|.-.+...-|+-.|++...- -+-|...|.+|...|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 8888888877888888888999998888888888888888875 25577888888899988999999999888887533
Q ss_pred CccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hh-------ccccchhhH
Q 004324 538 YEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQ-------FNENSRMHS 608 (761)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~-------l~p~~~~~~ 608 (761)
- .+...+..|...+...++.++|.+.++ ++ .+|+..-+-
T Consensus 463 d--------------------------------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 463 D--------------------------------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred c--------------------------------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 1 124567777778888888888887776 22 345455556
Q ss_pred HHHHHHHHhhhhccCCCC
Q 004324 609 VLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 609 ~~l~~~~~~~g~~~~a~~ 626 (761)
..|+.-+.+.++|++|..
T Consensus 511 ~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 511 LFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHhhcchHHHHH
Confidence 678888888888887764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-07 Score=96.16 Aligned_cols=366 Identities=11% Similarity=0.073 Sum_probs=251.4
Q ss_pred ccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004324 141 WLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTF 218 (761)
Q Consensus 141 ~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~ 218 (761)
+..-|.+-+-+. .....|..+.|...|...+.. .|..=..|..|.... -+.+.+..+-...+. |..-.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~l~~~l~~-----~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSILVVGLPS-----DMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHHHHhcCcc-----cchHH
Confidence 344454443333 556777788888888777765 354545555444433 233333322222211 11111
Q ss_pred H--HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cC
Q 004324 219 H--ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQ 294 (761)
Q Consensus 219 ~--~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~ 294 (761)
. -+..++- +....+++++=....... |+ |+..-+.+.+.++.-.. .++++|+.+|+++.+.++- -|
T Consensus 229 ~~~F~~~a~~---el~q~~e~~~k~e~l~~~-gf-~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knDPYRl~d 298 (559)
T KOG1155|consen 229 KKFFLKKAYQ---ELHQHEEALQKKERLSSV-GF-PNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKNDPYRLDD 298 (559)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhc-cC-CccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcCCCcchh
Confidence 1 1223343 455777888777777765 44 44444444444444333 2899999999999887532 25
Q ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004324 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (761)
Q Consensus 295 ~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 374 (761)
.++|+..+ +..... ..+.++.+-...=-+--..|+..+.+-|+-.++.++|...|+...+.++. ...+|+.|.
T Consensus 299 mdlySN~L--Yv~~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmG 371 (559)
T KOG1155|consen 299 MDLYSNVL--YVKNDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMG 371 (559)
T ss_pred HHHHhHHH--HHHhhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhh
Confidence 67887766 222221 11222222211111223567888889999999999999999999998865 567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 375 EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD 454 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 454 (761)
.-|....+...|.+-++...+- .+.|-..|-.|-++|.-.+.+.-|+-.|++..+-. +-|...|.+|..+|.+.++++
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~ 449 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLE 449 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHH
Confidence 9999999999999999998876 35588899999999999999999999999988843 447899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCH-HHHHHHHHHHHhCCCHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVNT-RSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~ 529 (761)
+|.+.|.........+...+..|.+.|-+.++.++|.+.|++-++ .|.+.|.. ....-|..-+.+.+++++|..+
T Consensus 450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 999999999874455778999999999999999999999887655 34333422 2333355667789999999988
Q ss_pred HHHHHH
Q 004324 530 YDLMCL 535 (761)
Q Consensus 530 ~~~m~~ 535 (761)
......
T Consensus 530 a~~~~~ 535 (559)
T KOG1155|consen 530 ATLVLK 535 (559)
T ss_pred HHHHhc
Confidence 887763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-07 Score=95.46 Aligned_cols=331 Identities=14% Similarity=0.082 Sum_probs=219.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHH
Q 004324 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ---LGGYQPRPSLHNSLFRALV 265 (761)
Q Consensus 189 ~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~---~~g~~p~~~t~~~ll~~~~ 265 (761)
+|++..-++.|.++++...+. +.-+...|.+.-.-=- ++|+.+...++..+-.. ..|+..+..-|-.=-.+|-
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE---~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEE---ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344555566666666665543 3335555554443333 46666666666554321 1255555555544444444
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 266 SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKE 345 (761)
Q Consensus 266 ~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 345 (761)
.. |.+--+..+....+..|+.-...--+|+-....+.+.+.++-|..+|....+. +.-+...|......=-..
T Consensus 491 ~a------gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 491 DA------GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred hc------CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 33 35555566666666666655555555555556666777777777777666553 233456666666666667
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
|..+.-..+|++....-++ ....|-....-+-+.|++..|..++.+..+.. +-+...|-+-+..-..+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 7777777777777776543 34566666777777888888888888887763 225667888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
.+... ..|+...|.--+..---.+..++|.+++++.++.++.-...|-.+...+-+.++++.|.+.|..=.+. ++-
T Consensus 642 akar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~ 717 (913)
T KOG0495|consen 642 AKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPN 717 (913)
T ss_pred HHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCC
Confidence 87766 45666777666666666788888888888888766666778888888888888888888888776665 444
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 506 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..-.|..|...=-+.|.+-.|..++++.+-+
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 5567777777777888888888888887754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-10 Score=117.25 Aligned_cols=273 Identities=10% Similarity=-0.035 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChH-HHHH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYAKIGEFM-KSLE 388 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~-~A~~ 388 (761)
...+|..+|...... +.-...+..-+..+|...+++++|+++|+.+.+..+- -+...|.+.+-.+-+.=.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 367888999885443 3334577788899999999999999999999886421 26678888776554321111 1222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
+.+.++ -...||-++-+.|.-+++.+.|++.|++.++. .| ..++|+.+.+=+.....+|.|...|+..+.-.
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 333322 24689999999999999999999999999884 45 67889888888888899999999999987433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEK 547 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 547 (761)
+.+-..|--|...|.+.++++.|+-.|++..+-+ +-|.+....+...+-+.|+.++|+.++++... .+|.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~----ld~kn--- 556 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH----LDPKN--- 556 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh----cCCCC---
Confidence 3334444556788999999999999999999875 44677777788888999999999999999985 23220
Q ss_pred HHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCC
Q 004324 548 LDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (761)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~ 625 (761)
+..----...+...++.++|...++ .++.|++...+.+++.+|.+.|+.+.|.
T Consensus 557 -------------------------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 557 -------------------------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -------------------------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 1111111122334577888888888 7889999999999999999999988887
Q ss_pred C
Q 004324 626 F 626 (761)
Q Consensus 626 ~ 626 (761)
.
T Consensus 612 ~ 612 (638)
T KOG1126|consen 612 L 612 (638)
T ss_pred H
Confidence 6
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=110.24 Aligned_cols=287 Identities=12% Similarity=0.070 Sum_probs=204.8
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|+++.|++.+....+.. |++ ..+.++........|+.+.|...+.+..+..-.+...+-......+...|+++.|.+
T Consensus 98 g~~~~A~~~l~~~~~~~--~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHA--AEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCHHHHHHHHHHHhhcC--CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 59999999998887665 332 344455567788899999999999998765322223344445788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL---CKAEETELTESLMKEFVE 430 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~---~~~g~~~~A~~l~~~m~~ 430 (761)
.++.+.+..+. +..++..+...|.+.|++++|.+++..+.+.++.+....-..-..++ ...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999865 66788899999999999999999999999987643332211111222 333333444445555555
Q ss_pred cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 431 TGM---KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI--YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 431 ~g~---~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
..- +.+...+..+...+...|+.++|.+++++..+..+.+... .....-.....++.+.+.+.+++..+.. +-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CC
Confidence 321 2378889999999999999999999999998744444321 1222223334578899999999888763 22
Q ss_pred CH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhh
Q 004324 506 NT--RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGL 583 (761)
Q Consensus 506 ~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 583 (761)
|. ....++...|.+.|++++|.+.|+........|++. .+..|...+
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-------------------------------~~~~La~ll 380 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-------------------------------DLAMAADAF 380 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-------------------------------HHHHHHHHH
Confidence 34 566688999999999999999999533223334443 344666667
Q ss_pred hhhhhhhHHHHHHH
Q 004324 584 CIESDEKRKRHMIR 597 (761)
Q Consensus 584 ~~~g~~~~a~~~~~ 597 (761)
.+.|+.++|.++++
T Consensus 381 ~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 381 DQAGDKAEAAAMRQ 394 (409)
T ss_pred HHcCCHHHHHHHHH
Confidence 78888888888877
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-08 Score=97.16 Aligned_cols=406 Identities=13% Similarity=0.100 Sum_probs=267.0
Q ss_pred CCccchhhHHHHHHhhhcccCCcchhhhhH----HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 004324 123 LPSHKGGTLVRILNAQKKWLRQEDGTYLAV----HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAK 198 (761)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 198 (761)
..+..+..|++|-..+...+..+...-..- ...+.|.++.|..-|+...+. .||..+.-.|+-++..-|+-++
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHH
Confidence 334567778887776665565554432221 566899999999999999886 4576665556666667899999
Q ss_pred HHHHHHHHHHCCCC------------CCHHHHHHHHH-----HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHH---HH
Q 004324 199 CRDIFDDIINQGRV------------PSEMTFHILIV-----AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL---HN 258 (761)
Q Consensus 199 A~~~f~~m~~~g~~------------pd~~~~~~li~-----~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t---~~ 258 (761)
..+.|..|..--.. |+....|-.|. ..-+. +..+.++|+-.-.++..- -+.|+-.. |.
T Consensus 328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~-~ka~aek~i~ta~kiiap-vi~~~fa~g~dwc 405 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE-NKADAEKAIITAAKIIAP-VIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhcc-ccccchhcccHHH
Confidence 99999999864322 33333333322 22210 111223333333333321 23344210 00
Q ss_pred -HHHHHHHc----------CCC-CCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc
Q 004324 259 -SLFRALVS----------KPG-GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA 326 (761)
Q Consensus 259 -~ll~~~~~----------~~g-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~ 326 (761)
-.+.+-.. ..| -+.+|+++.|.+++.-+.+.+...-...-+.+..++......++..|...-+.....
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 00110000 000 123479999999999988777655444455555555555566677776665544322
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406 (761)
Q Consensus 327 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (761)
. .-|......--+.....|++++|.+.+++....+-.-....|| +--.+-+.|++++|++.|-++..- +.-++...-
T Consensus 486 d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 486 D-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred c-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 1 1122222222223345799999999999998875432333444 334567789999999999887532 122666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
-+.+.|-...+..+|.+++-+.... ++.|......|.+.|-+.|+-.+|.+.+-+--+-++-|..+..-|..-|....-
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 7888899999999999998655432 445788899999999999999999998877666678888998889999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCccC
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL-SSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
+++|..+|++..- +.|+.+-|-.||..|. +.|++.+|.++++...+ .+.-+
T Consensus 642 ~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfped 693 (840)
T KOG2003|consen 642 SEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPED 693 (840)
T ss_pred HHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccc
Confidence 9999999998765 6899999999997665 68999999999999985 44433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-08 Score=93.18 Aligned_cols=308 Identities=12% Similarity=0.072 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC-CCcC
Q 004324 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQ 294 (761)
Q Consensus 216 ~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~-~~p~ 294 (761)
..|-.=++.+. ..+.++|..+|-+|.+ ..|..+--+.-|..+.+.+ |.++.|++++..+.++. ..-+
T Consensus 37 r~Yv~GlNfLL----s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsR-----GEvDRAIRiHQ~L~~spdlT~~ 104 (389)
T COG2956 37 RDYVKGLNFLL----SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSR-----GEVDRAIRIHQTLLESPDLTFE 104 (389)
T ss_pred HHHHhHHHHHh----hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCCCchH
Confidence 34555566666 5778889999999887 3577666666677777766 48899999988886643 2222
Q ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 004324 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAF 370 (761)
Q Consensus 295 ~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~ 370 (761)
.-.....-+..-|...|-+++|+.+|..+...|.. -.....-|+..|-...+|++|..+-+++.+.+..+.. ..|
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 33334444456677888899999999998875522 3556778999999999999999999999888755432 345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
.-|...+....+++.|..++.+..+..-+ .+..--.+-......|+++.|.+.++...+.+..--..+...|..+|.+.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 55666666778999999999988765211 22222344567888999999999999999987555567888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---CCCHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAE 527 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~---~g~~~~A~ 527 (761)
|+.+++...+..+.+ ..++...-..|-..-....-.+.|..++.+-..+ +|+...+..+|..-.. .|...+-.
T Consensus 263 g~~~~~~~fL~~~~~-~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 263 GKPAEGLNFLRRAME-TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHH-ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhH
Confidence 999999999999886 2334444455555445555567777777666665 4999999999987653 45677888
Q ss_pred HHHHHHHHcCCccC
Q 004324 528 KIYDLMCLKKYEIE 541 (761)
Q Consensus 528 ~~~~~m~~~g~~~~ 541 (761)
.+++.|....+.-.
T Consensus 339 ~~lr~mvge~l~~~ 352 (389)
T COG2956 339 DLLRDMVGEQLRRK 352 (389)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888885444333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=100.41 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...|...|++++|.+.+++..+.... +...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677778888889999999888888776532 46777888888888999999999998887653 3355677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
+...|++++|.+.++........ .....+..+...|...|++++|...+.+..+..+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988874322 23456777888889999999999999998875556677888899999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+++++..... +.+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988763 45677777888888899999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-08 Score=94.53 Aligned_cols=305 Identities=16% Similarity=0.125 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCChHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIP--TPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 386 (761)
..+.++|.++|-+|.+.. .-+..+--+|-+.|-+.|.+|.|.++++.+.++- ...+ ..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 446899999999998842 1133444688899999999999999999988762 2111 12334567889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM----PSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
..+|..+.+.|.. -....-.|+..|-...+|++|.++-+++.+.|-.+.. .-|.-|...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999886432 2445678999999999999999999999987655442 2355566666667889999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI 540 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (761)
..+-.+..+..--.+.+.+...|+++.|.+.++...+.+ |+. .+...|..+|.+.|+.+++...+.++.+..-++
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 887555666666778889999999999999999999986 453 467788999999999999999999999866556
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH-hhccccchhhHHHHHHHHHhhh
Q 004324 541 ESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 541 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~~g 619 (761)
++.. +.+..+. ...|.-+....+.+ +.-.|..-..|-++..
T Consensus 283 ~~~l-----------------------------~l~~lie---~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~------ 324 (389)
T COG2956 283 DAEL-----------------------------MLADLIE---LQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY------ 324 (389)
T ss_pred cHHH-----------------------------HHHHHHH---HhhChHHHHHHHHHHHhhCCcHHHHHHHHHh------
Confidence 5542 1111111 12232222222233 5666765544444332
Q ss_pred hccCCCCccccCCcccchhhhhhccCccceeeeeeeCCc
Q 004324 620 EWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGH 658 (761)
Q Consensus 620 ~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty~~li~g~ 658 (761)
...+|.++..++..-++++|+.+-+. ....|.+==+|+
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvge~l~-~~~~YRC~~CGF 362 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVGEQLR-RKPRYRCQNCGF 362 (389)
T ss_pred hhccccccchhhhHHHHHHHHHHHHh-hcCCceecccCC
Confidence 23456666666777778888876333 334455544444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.3e-09 Score=109.38 Aligned_cols=280 Identities=16% Similarity=0.098 Sum_probs=215.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHhhc
Q 004324 232 GCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL--EIQKDIYSGLIWLHSYQ 308 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~ 308 (761)
-+..+|+.+|....+. .+|+ ++...+=.+|-.. +++++|+++|+.+.+... .-+..+|+..++ -..
T Consensus 333 y~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl------~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW--HLq 401 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH---HYNTGWVLSQLGRAYFEL------IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW--HLQ 401 (638)
T ss_pred HHHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhccccccchhHHHHHHH--HHH
Confidence 3578999999996653 3544 3444444555554 599999999999976542 235688887763 111
Q ss_pred cCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004324 309 DNIDKERISLLKK-EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (761)
Q Consensus 309 ~~g~~~~a~~l~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 387 (761)
-+-++..+. ++... -+-...+|.++-++|+-.++.+.|.+.|++..+.+.. ...+|+.+-.-+.....+|.|.
T Consensus 402 ----~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 402 ----DEVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred ----hhHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHH
Confidence 123333332 22222 2335789999999999999999999999999987643 6788888888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 388 EIFREMQERLGSASVPAY---HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
..|+..... |...| --|.-.|.+.++++.|+-.|+...+-. +-+.+....+...+-+.|+.++|++++++..
T Consensus 476 ~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 476 KSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999987654 55554 456778999999999999999998854 3357777888889999999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.--+.|+..---.+..+...+++++|+..++++++- ++-+...|-.+...|.+.|+.+.|+.-|.-|..
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 655666666666677888889999999999999986 455567888888999999999999999998874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-07 Score=88.77 Aligned_cols=285 Identities=12% Similarity=0.021 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-cCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV-SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~-~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
.|++.+|+++..+-.+. +-.| +.+.++.+=+ ... |+.+.|-+.+.+..+..- |......+.+......
T Consensus 97 eG~~~qAEkl~~rnae~-~e~p---~l~~l~aA~AA~qr-----gd~~~an~yL~eaae~~~--~~~l~v~ltrarlll~ 165 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQP---VLAYLLAAEAAQQR-----GDEDRANRYLAEAAELAG--DDTLAVELTRARLLLN 165 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Ccch---HHHHHHHHHHHHhc-----ccHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHh
Confidence 69999999998887665 3333 2333333322 222 588889888888876532 3344444455577778
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCC
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-------PAFVYKMEAYAKIGE 382 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~ 382 (761)
.|+...|..-..++.+.+.. +..+......+|.+.|++.....+...|.+.|.--+. .+|+.+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 88999999888888876544 5778889999999999999999999999999875443 356666666666665
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.+.-...++....+ .+-+...-.+++.-+.+.|+.++|.++..+..+.+..|.. ...-.+.+-++.+.-.+..++
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 66555566666543 3345555667888899999999999999999998877762 222345566777777777777
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
-.+..+-+...+.+|...|.+.+.+.+|...|+...+. .|+..+|+-+..+|.+.|+..+|.+.+++-..
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77655666689999999999999999999999988875 58999999999999999999999999998773
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-07 Score=93.77 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=184.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
..|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..+.-..++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4567777777777665555443 444555556666777777777777777776445566666677777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-------MPSYINLTNMYLNLGMHDRLHLAFS 461 (761)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~~li~~~~~~g~~~~a~~~~~ 461 (761)
-++++.+.+-. +.........+|.+.|++.+...++..|.+.|+-.| ..+|+.+++=....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777665332 455566777777777777777777777777765544 2466777776666666666677777
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Q 004324 462 ECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
...+..+.++..-.+++.-+.++|+.++|.++.++..+++ ..|+ -...-.+.+-++...=++..++-.. ..+-+
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~-~h~~~ 327 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR----LCRLIPRLRPGDPEPLIKAAEKWLK-QHPED 327 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh----HHHHHhhcCCCCchHHHHHHHHHHH-hCCCC
Confidence 7766666666777777778888888888888887777766 4444 2222344556666555555555442 11122
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 542 SAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 542 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
+-.+.+|..-|.+++.+.+|...++ +...|+.. .|..+++.+.+.|
T Consensus 328 -------------------------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g 375 (400)
T COG3071 328 -------------------------------PLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLG 375 (400)
T ss_pred -------------------------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcC
Confidence 3456677777788888888888877 55566543 6778888888887
Q ss_pred hccCCCC
Q 004324 620 EWLHPSF 626 (761)
Q Consensus 620 ~~~~a~~ 626 (761)
+..+|..
T Consensus 376 ~~~~A~~ 382 (400)
T COG3071 376 EPEEAEQ 382 (400)
T ss_pred ChHHHHH
Confidence 7776664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-06 Score=83.10 Aligned_cols=397 Identities=14% Similarity=0.120 Sum_probs=276.0
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
=.+.+.+..|..+++..+..- |---..|-..+.+=-..|++..|+++|++-.+ ..|+.-+|++.|.-=. |-..
T Consensus 117 Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fEl---Ryke 189 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFEL---RYKE 189 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHH---HhhH
Confidence 347788899999999988763 33334555666666778999999999998776 4799999999999888 7899
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHhhccCC
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQDNI 311 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~g 311 (761)
++.|..+|+...- +.|++.+|---..-= ..+ |.+..|..+|+..++.--. .....+..+. ..-.+..
T Consensus 190 ieraR~IYerfV~---~HP~v~~wikyarFE-~k~-----g~~~~aR~VyerAie~~~~d~~~e~lfvaFA--~fEe~qk 258 (677)
T KOG1915|consen 190 IERARSIYERFVL---VHPKVSNWIKYARFE-EKH-----GNVALARSVYERAIEFLGDDEEAEILFVAFA--EFEERQK 258 (677)
T ss_pred HHHHHHHHHHHhe---ecccHHHHHHHHHHH-Hhc-----CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHH
Confidence 9999999999875 669988876544422 222 5888888888877543211 0112222222 2222334
Q ss_pred CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHH--------HHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004324 312 DKERISLLKKEMQQAGFEEG--KEVLLSVLRVCAKEGDVEDAEK--------TWLRLLESDNGIPTPAFVYKMEAYAKIG 381 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~--------~~~~m~~~g~~~~~~~~~~li~~~~~~g 381 (761)
.++.|.-+|+-.... +.-+ ...|......=-+-|+....+. -++.+++.++ .|-.+|--.+..--..|
T Consensus 259 E~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 259 EYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcC
Confidence 467777777766553 2222 3344444444344555433332 2344555443 36777888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 004324 382 EFMKSLEIFREMQERLGSASVP--AYHKII-----EL---LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-- 449 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~--t~~~li-----~~---~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-- 449 (761)
+.+...++|+..... ++|-.. .|.--| -+ =....+++.+.++++..++ =++...+||.-+--+|++
T Consensus 337 ~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHH
Confidence 999999999988764 555321 122211 11 1346788899999999888 244456788777666664
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 450 --LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 --~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
+.++..|.+++...+ |..|-..+|-..|..=.+.++++.+..++++..+-+ +-|..+|......=...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AI-G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI-GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 568889999888776 456778889999999999999999999999999875 557788988888888899999999
Q ss_pred HHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccch
Q 004324 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR 605 (761)
Q Consensus 528 ~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~ 605 (761)
.+|.-.+.. |.-+ |+ .+.|.+.|.--...|..+.|..+++ +...+...
T Consensus 492 aifelAi~q---p~ld---------------------mp------ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 492 AIFELAISQ---PALD---------------------MP------ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHhcC---cccc---------------------cH------HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 999988852 2222 11 7889999988888899999999988 55555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7e-08 Score=108.55 Aligned_cols=253 Identities=9% Similarity=-0.053 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh-------hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS-------YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG 346 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 346 (761)
+.+++|...|++.++.... +...+..+...+. ....++.++|...+++..+... -+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 4788999999999877643 2333333322111 1234567899999988877532 25667777778888899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
++++|...|++..+.++. +...|..+...|...|++++|...+++..+.. |+. ..+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999888754 56678888889999999999999999988753 432 23334455567788899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 004324 426 KEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 426 ~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 504 (761)
+++.+.. .| +...+..+..+|...|+.++|...+.++....+.+....+.+...|+..| ++|...++.+.+...-.
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8887654 34 44557777888888999999999998876544445566677777778777 47777777766543223
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
|...-+..++ |.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 3334444444 5556776666666 7777644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=109.03 Aligned_cols=259 Identities=11% Similarity=0.023 Sum_probs=175.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004324 165 RVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRM 244 (761)
Q Consensus 165 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m 244 (761)
.++..+...| +.||.++|..+|.-||..|+.+.|- +|.-|.-+...-+...++.++.+.. +.++.+.+.
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~---~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK---EANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc---ccccccCCC------
Confidence 4566777788 8999999999999999999999999 9999988877778899999999988 677776654
Q ss_pred HhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH----HcCCCcCHHHHHHHHHHHhhccCCCHHHHH---
Q 004324 245 IQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL----TSGLEIQKDIYSGLIWLHSYQDNIDKERIS--- 317 (761)
Q Consensus 245 ~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~li~~~~~~~~g~~~~a~--- 317 (761)
.|-.-||..++.+|... |++. .++..++.+..+. ..|+.... .++.+...++.. -...|.
T Consensus 80 ------ep~aDtyt~Ll~ayr~h-GDli--~fe~veqdLe~i~~sfs~~Gvgs~e---~~fl~k~~c~p~-~lpda~n~i 146 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIH-GDLI--LFEVVEQDLESINQSFSDHGVGSPE---RWFLMKIHCCPH-SLPDAENAI 146 (1088)
T ss_pred ------CCchhHHHHHHHHHHhc-cchH--HHHHHHHHHHHHHhhhhhhccCcHH---HHHHhhcccCcc-cchhHHHHH
Confidence 58888999999999875 3222 2344444333222 22222111 111111111111 111111
Q ss_pred ------HHHHHHHHcC-CCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004324 318 ------LLKKEMQQAG-FEEGKEVLLS---VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (761)
Q Consensus 318 ------~l~~~m~~~g-~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 387 (761)
.++....+.+ ..|-..-++. +|+-+.. .....+++........-.|+..+|.++++.-.-+|+++.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 1122222222 1221111111 1332222 23344555544333222489999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
.++.+|.++|++.+..-|-.||-+ .+....+..+++-|.+.|+.|+..|+..-+-.+.+.|.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999998887788766 88888999999999999999999999988888877665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-07 Score=93.02 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=162.7
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 383 (761)
+..+...|++++|...+++..+.. ..+...+..+...|...|++++|.+.++...+.... +...+..+...|...|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccH
Confidence 367778899999999999987753 234677888899999999999999999999987644 567788889999999999
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
++|.+.|++...... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999986532 2234567778888999999999999999998854 33467888999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..+..+.+...+..++..+...|+.++|..+.+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88754567788888899999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-07 Score=90.96 Aligned_cols=403 Identities=12% Similarity=0.023 Sum_probs=251.5
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFD-FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPV 230 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~-~~~~~li~~~~~~~~ 230 (761)
.|-+.|.+++|.+.+.+.+.. .|+ ...|.....+|...|+|++..+--..-.+. .|+- ..+..--+++- +
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E---~ 195 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE---Q 195 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH---h
Confidence 467899999999999999985 455 788888999999999999988877766664 4442 23444444554 5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH--------HHHHHHHHHHH-cC--CCcCHHHHH
Q 004324 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ--------QAEFIFHNLLT-SG--LEIQKDIYS 299 (761)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~--------~A~~~~~~m~~-~~--~~p~~~~~~ 299 (761)
.|++++|+.=. |..+++.++-... -.- .|+....+-.+ .+ +.|......
T Consensus 196 lg~~~eal~D~--------------tv~ci~~~F~n~s------~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 196 LGKFDEALFDV--------------TVLCILEGFQNAS------IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred hccHHHHHHhh--------------hHHHHhhhcccch------hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 67777665422 2333333333221 111 22222222222 11 234443333
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC---ChHHHHHHHHHHHh---CCCC---CC--
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK--EG---DVEDAEKTWLRLLE---SDNG---IP-- 366 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~--~g---~~~~a~~~~~~m~~---~g~~---~~-- 366 (761)
... ..+.... ...-..+.......+..++.. .+ .+.+|...+.+-.. .... .|
T Consensus 256 syf--~sF~~~~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~ 321 (606)
T KOG0547|consen 256 SYF--GSFHADP------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAE 321 (606)
T ss_pred HHH--hhccccc------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchh
Confidence 332 1110000 000000000111111111110 00 12222222211110 0000 01
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 367 ----TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (761)
Q Consensus 367 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 442 (761)
..+.+.-...+.-+|+...|..-|+..++..-.++ ..|--+-..|....+.++....|.+..+.. +-|..+|.-
T Consensus 322 le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyH 399 (606)
T KOG0547|consen 322 LEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYH 399 (606)
T ss_pred HHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHh
Confidence 11111122334457899999999999987643322 237778888999999999999999988854 335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
-..++.-.+++++|..=|++..+--+-++..|-.+.-+.-+.+++++++..|++.+.+ ++--...|+.....+...++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHh
Confidence 7788888899999999999998766667888888888888999999999999999998 66667899999999999999
Q ss_pred HHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhc
Q 004324 523 FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQF 600 (761)
Q Consensus 523 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l 600 (761)
++.|.+.|+..++. .|..+. +.+... ..+-.+++-.- -.+++..|..+.+ +++
T Consensus 478 Fd~A~k~YD~ai~L--E~~~~~------------------~~v~~~----plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 478 FDKAVKQYDKAIEL--EPREHL------------------IIVNAA----PLVHKALLVLQ-WKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHHHHHHHHHHhh--cccccc------------------ccccch----hhhhhhHhhhc-hhhhHHHHHHHHHHHHcc
Confidence 99999999998852 222110 011111 22222333222 3389999999988 999
Q ss_pred cccchhhHHHHHHHHHhhhhccCCCC
Q 004324 601 NENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 601 ~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+|....+|..|+.+-.+.|+.++|.+
T Consensus 533 Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 533 DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999888886
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-07 Score=97.97 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 004324 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA-----G-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLES----- 361 (761)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~----- 361 (761)
.............|...|+++.|..+++...+. | ..|...+ .+.+-..|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333334334568899999999999999877654 3 1333333 334667888999999999999998763
Q ss_pred CCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 004324 362 DNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQE---R--LG-SASVPA-YHKIIELLCKAEETELTESLMKEFVET- 431 (761)
Q Consensus 362 g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--g~-~p~~~t-~~~li~~~~~~g~~~~A~~l~~~m~~~- 431 (761)
|.. | -..+++.|-.+|++.|++++|...+++..+ + |. .|.+.+ ++.++..|+..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 322 1 234677788899999999999888876532 1 22 233333 667788899999999999999887652
Q ss_pred --CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 432 --GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 432 --g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
-+.++ ..+++.|...|.+.|++++|.++|++++. +.. -.-..++.|...|.+.+++++|.++|.+-
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12232 45899999999999999999999999874 122 22457788889999999999999999874
Q ss_pred ----hhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 498 ----HSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 498 ----~~~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+.-|.-.|+. .+|..|...|.+.|++++|+++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344334443 689999999999999999999998876
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-07 Score=93.04 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=218.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..-+......-..-|-..+++.+..++++.+.+..+ +....+..-|.++...|+-.+-..+=.+|.+. .+-..++|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 344566666667777889999999999999988764 35566667788999999988888888888876 4556789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
+.--|...|+..+|.+.|.+.... .|. ...|..+...|+-.|..++|...+....+-++-...-+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 999898899999999999887653 222 46788889999999999999998888776222111222223345777899
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCC
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLN 566 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 566 (761)
++-|.++|.+.... .|-|+...+-+--.....+.+.+|..+|+..++. -++. . ..+
T Consensus 396 ~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~----ik~~--------------~----~e~ 451 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV----IKSV--------------L----NEK 451 (611)
T ss_pred HHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH----hhhc--------------c----ccc
Confidence 99999999998876 4567788888777777889999999999988731 1110 0 000
Q ss_pred CchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhcc
Q 004324 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWL 644 (761)
Q Consensus 567 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~ 644 (761)
.. ...+++.|..+|++.+..++|...++ +.+.|.++.+|..++-+|...|+++.|... |++-+ ++
T Consensus 452 ~~---w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~--------fhKaL--~l 518 (611)
T KOG1173|consen 452 IF---WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH--------FHKAL--AL 518 (611)
T ss_pred cc---hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH--------HHHHH--hc
Confidence 01 26778999999999999999999999 899999999999999999999999988873 55443 46
Q ss_pred CccceeeeeeeC
Q 004324 645 TPRALAYWFMYG 656 (761)
Q Consensus 645 ~Pd~~ty~~li~ 656 (761)
.||..+-..|++
T Consensus 519 ~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 519 KPDNIFISELLK 530 (611)
T ss_pred CCccHHHHHHHH
Confidence 676654444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-08 Score=97.01 Aligned_cols=236 Identities=8% Similarity=-0.030 Sum_probs=194.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
-+-|..+|.+.|.+.+|.+.|..-.+. .|-+.||-.|-.+|.+..+++.|+.++.+-.+. ++-|+.....+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356889999999999999999987765 467788888999999999999999999988774 23344445567788889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
.++.++|.++++...+.-+.++....++..+|.-.++++.|+.+++++.+.| + -+...|+.+--+|.-.++++-++--
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-A-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-C-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999998667788888888999999999999999999999999 3 4778888888889999999999999
Q ss_pred HHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhh
Q 004324 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (761)
Q Consensus 530 ~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~ 607 (761)
|++.+..--.++ +-..+|-.|-......|++..|.+.++ +..+|++...
T Consensus 381 f~RAlstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 381 FQRALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHHHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 999885322222 226678888877888899999999999 6778888999
Q ss_pred HHHHHHHHHhhhhccCCCCccccCCcccchhhh
Q 004324 608 SVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLI 640 (761)
Q Consensus 608 ~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~ 640 (761)
++.|+-+-.+.|+.++|.. ++.-|..+.+.|-
T Consensus 432 lnNLavL~~r~G~i~~Ars-ll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARS-LLNAAKSVMPDMA 463 (478)
T ss_pred HHhHHHHHhhcCchHHHHH-HHHHhhhhCcccc
Confidence 9999999999999999885 4444544455553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-05 Score=76.90 Aligned_cols=390 Identities=11% Similarity=0.127 Sum_probs=275.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..+++..|..+|+...... ..+...|-.-+.+=.|+..+..|+.+|++....=...|-. |---+..=- ..|++.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE---~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE---MLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH---HhcccH
Confidence 4567889999999999876 4578889999999999999999999999987642222333 333333222 369999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (761)
.|.++|..-.+ ..|+.-.|++.|+-=.+-. .++.|..++++.+-.. |++ -+++-.+..--++|....
T Consensus 159 gaRqiferW~~---w~P~eqaW~sfI~fElRyk------eieraR~IYerfV~~H--P~v--~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 159 GARQIFERWME---WEPDEQAWLSFIKFELRYK------EIERARSIYERFVLVH--PKV--SNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHHHHHc---CCCcHHHHHHHHHHHHHhh------HHHHHHHHHHHHheec--ccH--HHHHHHHHHHHhcCcHHH
Confidence 99999998765 6799999999999766643 8999999999987544 444 444444466677888999
Q ss_pred HHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChH---HHHHH
Q 004324 316 ISLLKKEMQQA-GF-EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVYKMEAYAKIGEFM---KSLEI 389 (761)
Q Consensus 316 a~~l~~~m~~~-g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~---~A~~~ 389 (761)
|..+|...... |- .-+...+++...-=.++..++.|.-+|...+..-+.-. ...|......=-+-|+.. ++.--
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999876553 21 11223344444444467788899999988887643321 334444444434445543 33322
Q ss_pred -----HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHH
Q 004324 390 -----FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMY---LNLGMHD 454 (761)
Q Consensus 390 -----~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~---~~~g~~~ 454 (761)
++.+.+. -+-|-.+|--.+.--...|+.+...++++..+.. ++|-. ..|.-+=-++ ....+++
T Consensus 306 KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2333333 3457778877777778889999999999998875 45521 2222222222 2357889
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLK----NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
.+.++++.+++-++...+||.-+--+|+ ++-++..|.+++...+.. -|-..+|...|..=.+.+.++...+++
T Consensus 384 rtr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999877777788877766666 467899999999988765 488889999999999999999999999
Q ss_pred HHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhcc
Q 004324 531 DLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFN 601 (761)
Q Consensus 531 ~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 601 (761)
++.++ -+|. |..+|.-....-...|+.+.|..++.+.+.
T Consensus 461 Ekfle----~~Pe----------------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 461 EKFLE----FSPE----------------------------NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHh----cChH----------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99985 2333 366777777666778999999999995554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-07 Score=102.64 Aligned_cols=214 Identities=12% Similarity=0.028 Sum_probs=163.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 311 IDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCA---------KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
.+.++|..+|++..+. .|+. ..|..+..++. ..+++++|...+++..+.++. +...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 3467899999988764 5543 44555544443 234588999999999998754 678888888899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
|++++|...|++..+.. +.+...|..+...|...|++++|...+++..+.. |+ ...+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999998763 3346678888899999999999999999999854 43 22334455567778999999999
Q ss_pred HHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 460 FSECLEKCRP-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 460 ~~~m~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+.+..+...| +...+..+...|...|++++|...+.++.... |+ ....+.+...|+..| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE---ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9998764444 45567888899999999999999999987652 44 444555556677777 588888888764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-06 Score=92.49 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
.-+...|-..|+.++|+++.++..+. .|+ +..|..-...|-..|++.+|.+.++..+... .-|...-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 33455566666666666666666554 344 3345555566666666666666666666544 2245555555555666
Q ss_pred cCCHHHHHHHHHHHHh-CCCC--CHH----HH--HHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 450 LGMHDRLHLAFSECLE-KCRP--NRT----IY--GIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-~~~p--~~~----~~--~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
.|++++|.+++....+ +..| |.. .| .-...+|.+.|++..|++-|....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666666654 2111 111 11 223556777777777776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.3e-06 Score=88.87 Aligned_cols=296 Identities=17% Similarity=0.175 Sum_probs=210.1
Q ss_pred hhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcC
Q 004324 150 LAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMT-FHILIVAYLSA 228 (761)
Q Consensus 150 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~-~~~li~~~~~~ 228 (761)
-...+...|++++|++.+..-.+. +.............|.+.|+.++|..++..+.+++ |+... |..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 333566889999999999876554 56677888899999999999999999999999985 45555 55555555210
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH-HHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 004324 229 P--VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ-QAEFIFHNLLTSGLEIQKDIYSGLIWLH 305 (761)
Q Consensus 229 ~--~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~ 305 (761)
. .....+...++|+++... -|.......+.-.+.. | ..+. .+...+..+..+|++ .+++.+- .
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~--g----~~F~~~~~~yl~~~l~KgvP---slF~~lk--~ 151 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLE--G----DEFKERLDEYLRPQLRKGVP---SLFSNLK--P 151 (517)
T ss_pred cccccccHHHHHHHHHHHHHh---CccccchhHhhcccCC--H----HHHHHHHHHHHHHHHhcCCc---hHHHHHH--H
Confidence 0 123578889999999874 2654444333322322 1 1443 566667778888975 4455444 2
Q ss_pred hhccCCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 004324 306 SYQDNIDKERISLLKKEMQQA----G----------FEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPA 369 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 369 (761)
.|.......-...++...... | -.|.. .++.-+...|-..|++++|.++.++.++..+. .+..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHH
Confidence 333333444555555554432 1 12333 34456677788999999999999999998754 3778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--H
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMP------SY--I 441 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------t~--~ 441 (761)
|..-...|-+.|++.+|.+.++........ |...=+..+..+.++|++++|.+++....+.+..|-.. .| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 888999999999999999999999876432 66666778889999999999999999998877644321 11 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
-...+|.+.|++..|++.|..+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456789999999999988887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-05 Score=84.53 Aligned_cols=397 Identities=10% Similarity=0.042 Sum_probs=234.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCC-H
Q 004324 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPR-P 254 (761)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~ 254 (761)
+..+..+|-.|.-++.++|++..+-+.|++....-+ -....|+.+-..|. -.|.-..|+.+++.-.... -.|+ .
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~s---aag~~s~Av~ll~~~~~~~-~~ps~~ 393 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYS---AAGSDSKAVNLLRESLKKS-EQPSDI 393 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHH---HhccchHHHHHHHhhcccc-cCCCcc
Confidence 677899999999999999999999999999765422 25678888888888 5888999999998876531 2254 4
Q ss_pred HHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHH--cCCCcC--HHHHHHHHHHHhh--ccCC-------CHHHHHHHHH
Q 004324 255 SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT--SGLEIQ--KDIYSGLIWLHSY--QDNI-------DKERISLLKK 321 (761)
Q Consensus 255 ~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~--~~~~p~--~~~~~~li~~~~~--~~~g-------~~~~a~~l~~ 321 (761)
..+-..-..|.+.. |.++++...-.+.+. .+..-. ...|-.+-..++. .... ...+++..++
T Consensus 394 s~~Lmasklc~e~l-----~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 SVLLMASKLCIERL-----KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred hHHHHHHHHHHhch-----hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 44444444555554 366666665555544 111111 1122222111221 1111 1256677777
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC
Q 004324 322 EMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGS 399 (761)
Q Consensus 322 ~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 399 (761)
+..+.+ -.|+..-|-+ --|+..++++.|.+..++..+.+..-+...|..|.-.+.-.+++.+|+.+.+...+. |.
T Consensus 469 ~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred HHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 776654 4454444433 346788899999999999999876778999999999999999999999999875543 21
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------cCCC-----C--CHHHHHHHHHHHHhcC
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVE---------------------TGMK-----P--LMPSYINLTNMYLNLG 451 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---------------------~g~~-----p--d~~t~~~li~~~~~~g 451 (761)
|.+....-|..=...++.++|+.+...+.. .|+. | ...++..+..-....+
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 111111111111223444444443333321 0110 0 1122222221111110
Q ss_pred ---CHHHHHHHHHHHHh---CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 452 ---MHDRLHLAFSECLE---KCRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 452 ---~~~~a~~~~~~m~~---~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
..+.. +.+ .-.|+ ...|....+.+.+.+..++|...+.+.... .+-....|.-.-..+..
T Consensus 625 ~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 625 KSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEV 696 (799)
T ss_pred hhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHH
Confidence 00000 111 01122 235566677778888888888777777665 33455566666666777
Q ss_pred CCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHH--HHH
Q 004324 520 SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRH--MIR 597 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~--~~~ 597 (761)
.|++++|.+.|..... ++|+. +-+..+|...+...|+-..|.. +..
T Consensus 697 ~~~~~EA~~af~~Al~----ldP~h----------------------------v~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALA----LDPDH----------------------------VPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred HHhhHHHHHHHHHHHh----cCCCC----------------------------cHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 8888888888887764 55542 3344445555555555555544 444
Q ss_pred --hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 598 --FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 598 --~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..++|.+..++..++.++.+.|+.++|..
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 66677777777777777777777666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-05 Score=80.67 Aligned_cols=339 Identities=13% Similarity=0.088 Sum_probs=203.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN 258 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 258 (761)
+...--..+.+|-..++-+.|.....+.+..-..| --|.|+.-+-. ..++..++.--+.+.... . |= --
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p---~inlMla~l~~--~g~r~~~~vl~ykevvre--c-p~---aL 164 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP---RINLMLARLQH--HGSRHKEAVLAYKEVIRE--C-PM---AL 164 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccch---hHHHHHHHHHh--ccccccHHHHhhhHHHHh--c-ch---HH
Confidence 33344456677777788888888877766542222 22333333332 223333333333333332 1 10 11
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC-CCCCHHHHHH
Q 004324 259 SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEGKEVLLS 337 (761)
Q Consensus 259 ~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ 337 (761)
..|.++.+. -+..+..-=..|-...+.|..++...-+...+.+-.++...|..++--+.... +.-|+.....
T Consensus 165 ~~i~~ll~l-------~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~ 237 (564)
T KOG1174|consen 165 QVIEALLEL-------GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMA 237 (564)
T ss_pred HHHHHHHHH-------hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHH
Confidence 122222221 12222222233444445555566665666667777777777777666555444 4446677788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (761)
Q Consensus 338 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (761)
+...+...|+.++|.-.|+.....++. ++.....-.-.+.+.|+.+....+...+... .+-+..-|-.-...+....+
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhh
Confidence 999999999999999999988776532 1111111233345678888888887777654 11234445555556667788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
++.|+.+-++.++.. .-+...|..=...+...+++++|.-.|+....--+-+..+|.-|+..|.-.|++.+|.-+-+..
T Consensus 316 ~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 316 FERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 888888888877743 2234555555566778899999999998877644568889999999999999999998887776
Q ss_pred hhCCCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 498 HSDQTIGVNTRSCNIIL-SAYL-SSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 498 ~~~g~~~p~~~t~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
... ++.+..+.+.+- ..|. ...--++|.+++++- ...+|+.
T Consensus 395 ~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~----L~~~P~Y 437 (564)
T KOG1174|consen 395 IRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS----LKINPIY 437 (564)
T ss_pred HHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhh----hccCCcc
Confidence 654 445666665442 2222 222346777777654 4466654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-05 Score=80.47 Aligned_cols=398 Identities=13% Similarity=0.061 Sum_probs=245.9
Q ss_pred hhcCCccchhhHHHHHHhhhcccCCcchhh-hhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 004324 120 CKELPSHKGGTLVRILNAQKKWLRQEDGTY-LAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196 (761)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~-~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 196 (761)
-+.+.++.+..++..-. .++||.-+| ... ++...|+++...+--....+.. +.-+..+..-..++-+.|++
T Consensus 126 f~~kkY~eAIkyY~~AI----~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAI----ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhcccHHHHHHHHHHHH----hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccH
Confidence 36677788888877643 378985444 333 5567899999888888777754 33455666666777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH---------HHh-cCCCCCCHHHHHHHHHHHHc
Q 004324 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR---------MIQ-LGGYQPRPSLHNSLFRALVS 266 (761)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~---------m~~-~~g~~p~~~t~~~ll~~~~~ 266 (761)
++|+.= +|-.+++.+|. ...-.--+.+++++ |.+ ...+-|.....++.+..+-.
T Consensus 200 ~eal~D-------------~tv~ci~~~F~---n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 200 DEALFD-------------VTVLCILEGFQ---NASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHh-------------hhHHHHhhhcc---cchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 777432 33344444443 12222222333322 221 11355666555555554432
Q ss_pred CCCC-----C--chhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH---cCCCCC-----
Q 004324 267 KPGG-----L--SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ---AGFEEG----- 331 (761)
Q Consensus 267 ~~g~-----~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~---~g~~p~----- 331 (761)
.... . ....+.++.+-+..-...| +.+|...+.+-.. ....-+
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~----------------------Y~~a~~~~te~~~~~~~~~~~n~~d~~ 321 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEG----------------------YLKAYDKATEECLGSESSLSVNEIDAE 321 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchh----------------------HHHHHHHHHHHhhhhhhhccccccchh
Confidence 1100 0 0001222222222111111 1122211111100 000001
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 332 ----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 332 ----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..+....-..+.-.|+.-.|.+-|+..++....++ ..|--+..+|....+.++-...|++..+..- -|..+|..
T Consensus 322 le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyH 399 (606)
T KOG0547|consen 322 LEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYH 399 (606)
T ss_pred HHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHh
Confidence 11222222234457888899999999988876543 3377788899999999999999998876532 25566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
=...+.-.+++++|..=|++.+... +-+...|.-+.-+..+.+++++++..|++.++.++.-+.+||-....+...+++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 7777777888999999999888743 224667777777778889999999999999988888899999999999999999
Q ss_pred HHHHHHHHHhhhCCC----CCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcc
Q 004324 488 EKAEEIFNHMHSDQT----IGVNTR--SCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKK 561 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~----~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 561 (761)
++|.+.|+..++... +-.+.. .--+++..=- .+++..|++++.+..+ ++|..
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e----~Dpkc----------------- 536 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE----LDPKC----------------- 536 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc----cCchH-----------------
Confidence 999999998876320 111122 2222222222 3788888888888875 66653
Q ss_pred cccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 562 PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 562 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
...|-+|...-.+.|++++|.++++
T Consensus 537 -----------e~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 537 -----------EQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred -----------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5667777777788899999998887
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-06 Score=91.68 Aligned_cols=238 Identities=13% Similarity=0.145 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-C
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLES-----DNG-IPTP-AFVYKMEAYAKIGEFMKSLEIFREMQER-----L-G 398 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 398 (761)
..|+..+...|...|+++.|+.+++...+. |.. |.+. ..+.+...|...+++++|..+|+++..- | -
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667999999999999999999887664 321 2222 2334677899999999999999998532 2 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----C
Q 004324 399 SA-SVPAYHKIIELLCKAEETELTESLMKEFVE---T--GM-KPLM-PSYINLTNMYLNLGMHDRLHLAFSECLE----K 466 (761)
Q Consensus 399 ~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~--g~-~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~----~ 466 (761)
.| -..+++.|-..|++.|++++|...+++..+ . |. .|.+ ..++.+...|+..+.+++|..++....+ -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 234577788889999999999998888765 1 22 2222 3466777889999999999999998765 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 467 CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSD-----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 467 ~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..++ ..+|+.|...|-+.|++++|.++|++.... |...+. ...++-|..+|.+.+++.+|.++|.+-..-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 358999999999999999999999987653 112222 467788899999999999999999887521
Q ss_pred --CCccC-hHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 537 --KYEIE-SAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 537 --g~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
-++|+ |++ ..+|..|...|...|+++.|.++..
T Consensus 439 ~~~~g~~~~~~----------------------------~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 439 MKLCGPDHPDV----------------------------TYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHhCCCCCch----------------------------HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 11121 121 6789999999999999999998865
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00013 Score=77.87 Aligned_cols=370 Identities=12% Similarity=0.054 Sum_probs=231.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.....+++++|.+.+....+.+ +.|..++--|--.=+..|+++.....-.+..+... .....|.....++. -.|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~---L~g 157 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQH---LLG 157 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHH---HHH
Confidence 3445678999999999999886 66888877766666677888877777666665421 14567877777666 489
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
+...|..+.++..+...-.|+...|.-...-+.+.+--...|.+++|.+.+..-...- .|...+ -.+....+.+.++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~-~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAF-EETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHH-hhhHHHHHHHHhh
Confidence 9999999999998863235777776655554443221111145666666655432211 111111 1223345567788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCA-KEGDVEDAE-KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (761)
.++|..++..+... .||..-|.-.+..+. +..+.-++. .+|....+.-.......... ++..-.....+..-+++
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp-lsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP-LSVLNGEELKEIVDKYL 311 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc-HHHhCcchhHHHHHHHH
Confidence 99999999999876 578777776555444 455555555 66666555422111110000 11111123344455677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC----------CCCHH--HHHHHHHHHHhcCCHH
Q 004324 391 REMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE----TGM----------KPLMP--SYINLTNMYLNLGMHD 454 (761)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~----------~pd~~--t~~~li~~~~~~g~~~ 454 (761)
..+.++|+++--.. +.+-|-.-...+--.++.-.+.. .|. .|... |+-.++..|-+.|+++
T Consensus 312 ~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 77788887653333 33333222211111122222211 111 34433 4456788889999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|....+......+--+..|..=...+...|.+++|..++++..+-+ .||...=.--..-..++.+.++|.++.....
T Consensus 389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99999999887665556677777888999999999999999998875 3554433344555668899999999999999
Q ss_pred HcCCc
Q 004324 535 LKKYE 539 (761)
Q Consensus 535 ~~g~~ 539 (761)
+.|.+
T Consensus 467 r~~~~ 471 (700)
T KOG1156|consen 467 REGFG 471 (700)
T ss_pred hcccc
Confidence 88763
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-07 Score=87.13 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=186.3
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF-VYKMEAYAKIG 381 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g 381 (761)
+..+|.+.|.+.+|.+.|+.-... .|-..||..|-++|.+....+.|..++.+-.+.- |-.+|| .-+...+-..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHH
Confidence 347888999999999999887765 5567788889999999999999999999887764 334444 44677788889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 382 EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFS 461 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~ 461 (761)
+.++|.+++++..+. .+-++.+...+..+|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.++++-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998775 3446777777888899999999999999999999965 56788888888888999999999999
Q ss_pred HHHh-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 462 ECLE-KCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 462 ~m~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.... --.| -..+|-.|....+..|++.-|.+.|+-....+ .-+...+|.|.-.-.+.|++++|..+++....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8875 2223 35578888888889999999999999988775 34567899988888899999999999998874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-05 Score=84.53 Aligned_cols=281 Identities=13% Similarity=0.064 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN 258 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 258 (761)
++.+.....+-+-..+++.+..++++...+.. .+....+..=|.++. ..|+..+-..+=.+|.+. .+-...+|-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~---el~~~n~Lf~lsh~LV~~--yP~~a~sW~ 316 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLY---ELGKSNKLFLLSHKLVDL--YPSKALSWF 316 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHH---HhcccchHHHHHHHHHHh--CCCCCcchh
Confidence 33334444444445555555555555555442 123333444444444 455555544444555543 222233333
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc--C-CCCCHHHH
Q 004324 259 SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA--G-FEEGKEVL 335 (761)
Q Consensus 259 ~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~--g-~~p~~~~~ 335 (761)
++---|... |...+|.+.|.+....+. ..--.|+..++.++..+..+.|+..+...-+. | ..| +
T Consensus 317 aVg~YYl~i------~k~seARry~SKat~lD~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~ 383 (611)
T KOG1173|consen 317 AVGCYYLMI------GKYSEARRYFSKATTLDP---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----S 383 (611)
T ss_pred hHHHHHHHh------cCcHHHHHHHHHHhhcCc---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----H
Confidence 332222221 245555555554433221 12223444445555555555555444433221 1 111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
--+---|.+.++++.|.+.|.+.....+. |..+.+-+.-..-+ .
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~-----------------------------------~ 427 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYT-----------------------------------Y 427 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeeh-----------------------------------H
Confidence 11222344444555555554444433221 33334433333333 4
Q ss_pred CCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 416 EETELTESLMKEFVET------GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~------g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (761)
+.+.+|...|+..+.. ...--..+++.|..+|.+.+..++|...|++.+...+.+..+|.++.-.|...|+++.
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 4444444444444310 0112456788899999999999999999999888788899999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 490 AEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 490 A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
|.+.|++... +.||..+-..++..+
T Consensus 508 Aid~fhKaL~---l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 508 AIDHFHKALA---LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHh---cCCccHHHHHHHHHH
Confidence 9999999887 458887777777643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-05 Score=81.81 Aligned_cols=215 Identities=15% Similarity=0.101 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 312 DKERISLLKKEMQQAG-FEEG--KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
..+.++.-+.++.... +.|+ ...|..+...|.+.|+.++|...|....+..+. +...|+.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555554321 2222 234555556667777777777777777766543 46677777777777777777777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.|+...+. .| +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.......
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 77777654 23 3456666666677777777777777777664 3332211122222334566777777776554433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT----IGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|+...| .+ .+...|+..++ +.++.+.+... +.| ...+|..+...+.+.|++++|+..|++..+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3332222 22 22234444433 24444432110 011 234677777777788888888888887775
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-05 Score=82.47 Aligned_cols=231 Identities=11% Similarity=-0.010 Sum_probs=165.1
Q ss_pred hhhHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004324 273 KYYLQQAEFIFHNLLTSG-LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 351 (761)
.+..+.+..-+.+++... ..|+...-.+...+..+...|+.++|...|++..+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 367788888898888654 33443333444555778899999999999999887632 2578899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
.+.|+...+..+. +..+|..+...|...|++++|.+.|+...+. .|+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999987654 5678888999999999999999999998875 344332222222334567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 004324 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR-------PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 432 g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 504 (761)
. .|+... ..+.. ...|+...+ +.+..+.+.+. ....+|..+...|.+.|++++|...|++....+ +
T Consensus 195 ~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~ 267 (296)
T PRK11189 195 L-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--V 267 (296)
T ss_pred C-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 2 333222 22332 335555444 35555553222 234689999999999999999999999999875 4
Q ss_pred CCHHHHHHHH
Q 004324 505 VNTRSCNIIL 514 (761)
Q Consensus 505 p~~~t~~~li 514 (761)
||.+-+...+
T Consensus 268 ~~~~e~~~~~ 277 (296)
T PRK11189 268 YNFVEHRYAL 277 (296)
T ss_pred chHHHHHHHH
Confidence 5666655444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-08 Score=65.20 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 397 LGSASVPAYHKIIELLCKAEETELTESLMKEF 428 (761)
Q Consensus 397 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 428 (761)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=64.64 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666666555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00011 Score=78.28 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHH
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASV--PAYHKIIEL 411 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~li~~ 411 (761)
...+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|...+++.....- .|+. ..|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 334455666777777777777777766533 345566666777777777777777776654321 1222 234456666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC--CCHHHHHHHHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGM-KPLMPSY-I--NLTNMYLNLGMHDRLHLA---FSECLEKCR--PNRTIYGIYLESLK 482 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~-~--~li~~~~~~g~~~~a~~~---~~~m~~~~~--p~~~~~~~li~~~~ 482 (761)
+...|+.++|..++++...... .+..... + .++.-+...|....+.++ ......... ......-....++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 7777777777777777654221 1112111 1 223333333433322222 111111111 11122235667778
Q ss_pred hcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 483 NAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g-------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..|+.++|..+++.+.... .............-++...|++++|.+.+.+...
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999998886632 0001122223333455689999999999988875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.3e-05 Score=80.10 Aligned_cols=390 Identities=13% Similarity=0.116 Sum_probs=221.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|.+..|.+.-..=.. +..|......+..++.|..-+++|-.+|+.+... .-.+.+|- +..
T Consensus 624 lyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fk---kgd 688 (1636)
T KOG3616|consen 624 LYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFK---KGD 688 (1636)
T ss_pred HHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHH---ccc
Confidence 56677776665543221111 3345556666666666777777777777776541 22344444 344
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
-+.+|+++-+-. ++..+++.----....... |+++.|..-|-+... . .-.+.+..+...
T Consensus 689 af~kaielarfa-----fp~evv~lee~wg~hl~~~-----~q~daainhfiea~~--------~---~kaieaai~ake 747 (1636)
T KOG3616|consen 689 AFGKAIELARFA-----FPEEVVKLEEAWGDHLEQI-----GQLDAAINHFIEANC--------L---IKAIEAAIGAKE 747 (1636)
T ss_pred HHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHH-----HhHHHHHHHHHHhhh--------H---HHHHHHHhhhhh
Confidence 455565553321 1111121111100000001 345555444433210 0 001134445667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
|.+|+.+++.++..... ..-|..+..-|+..|+++-|+++|-+. ..++-.|.+|.+.|+|+.|.++-.+
T Consensus 748 w~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 89999999888765332 334667788899999999999998542 3456778999999999999988655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
. .|-...+..|-+-..-+-++|++.+|.+++-.+. .|+ ..|.+|-+.|..+...++..+-.- ..-..
T Consensus 817 ~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~--d~l~d 883 (1636)
T KOG3616|consen 817 C--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG--DHLHD 883 (1636)
T ss_pred h--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh--hhhhH
Confidence 4 3334456677777777888999999988875432 344 357888889988888887765431 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHH--
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDY-- 550 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~-- 550 (761)
|.-.+..-|-..|++..|..-|-+.. -|.+-++.|..++.|++|.++-+.= | +-+.. .+...
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte---g-g~n~~--k~v~flw 947 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE---G-GANAE--KHVAFLW 947 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc---c-cccHH--HHHHHHH
Confidence 55667777888899999887775432 3666778888888888888775531 1 12211 22222
Q ss_pred HHhhhhhh-hcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHHhhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 551 VLSLNRKE-VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 551 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+-.++.+. ++ +-- ..-..-.-+.-.+..+.++-|..+.++..........+-++..+...|++++|.+
T Consensus 948 aksiggdaavk------lln--k~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 948 AKSIGGDAAVK------LLN--KHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHhhCcHHHHH------HHH--hhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 22222210 00 000 0000111111223334444555554555544445556667777788888888865
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00037 Score=68.88 Aligned_cols=346 Identities=11% Similarity=0.052 Sum_probs=201.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
..-+.|++++|+.++..+.... .++...+--|..++.-.|.+.+|..+-...+ +....+.|+--++. +.+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlah--kln 135 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAH--KLN 135 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHH--HhC
Confidence 4458999999999999998865 5566666666666667889999988866553 44455556655554 788
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (761)
+-++-+.+-..+... .-|..+..++ .|.+. ++++|.+++.+++..+.. -...+.. ++.+|.+..-
T Consensus 136 dEk~~~~fh~~LqD~---~EdqLSLAsv--hYmR~-------HYQeAIdvYkrvL~dn~e--y~alNVy-~ALCyyKlDY 200 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT---LEDQLSLASV--HYMRM-------HYQEAIDVYKRVLQDNPE--YIALNVY-MALCYYKLDY 200 (557)
T ss_pred cHHHHHHHHHHHhhh---HHHHHhHHHH--HHHHH-------HHHHHHHHHHHHHhcChh--hhhhHHH-HHHHHHhcch
Confidence 877777776666542 2333333222 23443 899999999998866532 2222221 2356667766
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh--cCChHHHHH------------HHHHHHhCCC------------CC
Q 004324 313 KERISLLKKEMQQAGFEEGK-EVLLSVLRVCAK--EGDVEDAEK------------TWLRLLESDN------------GI 365 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~~--~g~~~~a~~------------~~~~m~~~g~------------~~ 365 (761)
++-+.+++..-.+. .||. ...|.......+ .|+..+++. ..+.+.+.++ -|
T Consensus 201 ydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP 278 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLP 278 (557)
T ss_pred hhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhch
Confidence 77777777766654 3443 333332222222 122222110 1111222110 00
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcC-------CHHHHHHHHHHHHHc
Q 004324 366 -----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL--LCKAE-------ETELTESLMKEFVET 431 (761)
Q Consensus 366 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g-------~~~~A~~l~~~m~~~ 431 (761)
-...--.|+--|.+.+++.+|..+.+++. |.. -|.-++.| ++..| .+.-|.+.|+..-..
T Consensus 279 ~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-----Ptt-P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 279 SLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD-----PTT-PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred HHHhhChHhhhhheeeecccccHHHHHHHHhhcC-----CCC-hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 01222345556778888888888776553 221 12223332 22222 245566666655555
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 004324 432 GMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (761)
Q Consensus 432 g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t 509 (761)
+..-|. .---++...+.-..++++.+..++.+..- ...|...| .+..+++..|++.+|+++|-...... + -|..+
T Consensus 353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~-i-kn~~~ 429 (557)
T KOG3785|consen 353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE-I-KNKIL 429 (557)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh-h-hhhHH
Confidence 544332 22334555555666778888777777662 33344444 45788888899999999987766544 3 25566
Q ss_pred HHHHH-HHHHhCCCHHHHHHHHHHHH
Q 004324 510 CNIIL-SAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 510 ~~~li-~~~~~~g~~~~A~~~~~~m~ 534 (761)
|.+++ .+|.++++++.|.+++-++-
T Consensus 430 Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 430 YKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 65554 67788888888877766653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00036 Score=74.37 Aligned_cols=309 Identities=10% Similarity=0.001 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH-
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHILIV-AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS- 255 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~~~~~li~-~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~- 255 (761)
....|..+...+...|+.+.|.+.+....+... .++...-..+-. .+. ..|++++|.+++++..+. .|+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~---~~g~~~~A~~~~~~~l~~---~P~~~~ 78 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW---IAGDLPKALALLEQLLDD---YPRDLL 78 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH---CCCcHH
Confidence 345566666667777888887776666554321 223222222111 122 479999999999998874 35433
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.+.. ...+... |. ..|....+.+.+.. .....|+ ..+...+....+...|++++|...+++..... ..+...+
T Consensus 79 a~~~-~~~~~~~-~~-~~~~~~~~~~~l~~--~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~ 151 (355)
T cd05804 79 ALKL-HLGAFGL-GD-FSGMRDHVARVLPL--WAPENPD-YWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV 151 (355)
T ss_pred HHHH-hHHHHHh-cc-cccCchhHHHHHhc--cCcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH
Confidence 3331 1111110 00 01345555555544 1122222 23333344467788899999999999998764 2345677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HH
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAY-H--KI 408 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~l 408 (761)
..+..+|...|++++|...++........ ++ ...|..+...+...|+.++|..+|++...... .+..... + .+
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL 231 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHH
Confidence 88888999999999999999988876432 22 23466788899999999999999999854322 1222211 1 23
Q ss_pred HHHHHhcCCHHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C------HHHHH
Q 004324 409 IELLCKAEETELTESL--MKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---N------RTIYG 475 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l--~~~m~~~g~--~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~------~~~~~ 475 (761)
+.-+...|....+.+. +........ ............++...|+.+.|..++..+...... . +...-
T Consensus 232 l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T cd05804 232 LWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL 311 (355)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHH
Confidence 3333444433333332 111111111 111122235666777889999999999998752111 1 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..--++...|+.++|.+++......
T Consensus 312 l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 312 AEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2233455789999999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0022 Score=68.86 Aligned_cols=365 Identities=12% Similarity=0.099 Sum_probs=224.9
Q ss_pred CCcchhhhhHHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004324 143 RQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (761)
Q Consensus 143 ~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li 222 (761)
.+++.+.--+.+...|+-++|....+.-.+.. .-+.+.|..+.-.+-...++++|.+.|......+-. |...|.-+-
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDls 116 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLS 116 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 34444444445557888888888888887765 345667776666666677899999999887775322 445555432
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC-CCcCHHHHHH
Q 004324 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN-SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQKDIYSG 300 (761)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~-~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ 300 (761)
--=+ +.|+++.....-.+..+. .|+...+- ...-+.-- . |....|..+.++..+.. -.|+...+..
T Consensus 117 lLQ~---QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L-~-----g~y~~A~~il~ef~~t~~~~~s~~~~e~ 184 (700)
T KOG1156|consen 117 LLQI---QMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHL-L-----GEYKMALEILEEFEKTQNTSPSKEDYEH 184 (700)
T ss_pred HHHH---HHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 2223 457777777777776653 35444332 22222211 2 58999999999887665 3455555543
Q ss_pred HH----HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 004324 301 LI----WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL-LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YKM 374 (761)
Q Consensus 301 li----~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li 374 (761)
.. ........|..++|++.+..-... ..|...+ -+-...+.+.+++++|..++..+...++ |...|. -+.
T Consensus 185 se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP--dn~~Yy~~l~ 260 (700)
T KOG1156|consen 185 SELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP--DNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc--hhHHHHHHHH
Confidence 22 234456777788888777654332 2233333 3455667899999999999999999874 555554 455
Q ss_pred HHHHHcCChHHHH-HHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 375 EAYAKIGEFMKSL-EIFREMQER---LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 375 ~~~~~~g~~~~A~-~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
.++.+..+.-+++ .+|....+. .-.|-....+.+. -..-.+..-.++..+.+.|+.+ ++..+...|-..
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p 333 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhch
Confidence 6665555555555 666666543 1112111111111 1223344556677778888765 344444444433
Q ss_pred CCHHHHHHHHHHHH---hCC------------CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHH
Q 004324 451 GMHDRLHLAFSECL---EKC------------RPNRTIYGI--YLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNI 512 (761)
Q Consensus 451 g~~~~a~~~~~~m~---~~~------------~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~-~t~~~ 512 (761)
...+-..++.-.+. .+. +|....|.. ++..|-+.|+++.|..+++....+- |+. .-|.+
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT---PTliEly~~ 410 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT---PTLIELYLV 410 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC---chHHHHHHH
Confidence 22222222222222 122 566666654 6788889999999999999999873 554 45666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
=...+.+.|++++|..++++.++-
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Confidence 668899999999999999999863
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00028 Score=71.28 Aligned_cols=266 Identities=13% Similarity=0.037 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCC
Q 004324 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE 329 (761)
Q Consensus 252 p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~ 329 (761)
-|+.....+-+.+... |+.++|...|+.....++. -..+.|..++ ...|+.++...+...+.... +
T Consensus 230 ~NvhLl~~lak~~~~~------Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL-----~~eg~~e~~~~L~~~Lf~~~-~ 297 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYN------GDYFQAEDIFSSTLCANPDNVEAMDLYAVLL-----GQEGGCEQDSALMDYLFAKV-K 297 (564)
T ss_pred ccHHHHHHHhhhhhhh------cCchHHHHHHHHHhhCChhhhhhHHHHHHHH-----HhccCHhhHHHHHHHHHhhh-h
Confidence 3444444444444443 4666777777665543311 1123333332 44555666666555554331 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
-...-|-.-.......++++.|..+-++.++.+.. ++..|-.-...+...|+.++|.-.|+..+... +-+...|.-|+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~ 375 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLF 375 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 11222222233334566777777777776665533 44455444566777788888888888776541 23677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLT-NMYLNL-GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li-~~~~~~-g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
..|...|.+.+|.-+-++..+. +.-+..+.+.+. ..|.-. ..-++|.+++++-++.-+.-....+.+...+...|+.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc
Confidence 8888888888887766665542 223344444442 223222 2356788888877654344456777788888888999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+++..+++.-... .||....+.|...+...+.+.+|.+.|...++
T Consensus 455 ~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 455 KDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred chHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999888774 48888899999999888999999999988874
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.3e-06 Score=84.88 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=157.6
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|.+..+..-.+ .. ...+....-.-.....++...|+.+.++ .++... -.|.......+...+....+-+.+..
T Consensus 15 G~Y~~~i~e~~-~~--~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 15 GNYQQCINEAS-LK--SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp T-HHHHCHHHH-CH--TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred hhHHHHHHHhh-cc--CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 46666664444 21 2223333333333346666677666443 333333 36666666555444444344445544
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 354 TWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 354 ~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
-+++....... .+..........|...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+..
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44443333322 22333333345677789999999998753 367777888999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 004324 433 MKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~ 508 (761)
.| .+...|..++.. ...+.+|..+|+++.+.+.++..+.|.+..++...|++++|.+++.+....+ +-|..
T Consensus 162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d 236 (290)
T PF04733_consen 162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPD 236 (290)
T ss_dssp --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHH
T ss_pred --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHH
Confidence 34 344445444433 3469999999999988888999999999999999999999999999988765 34667
Q ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDF-VKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (761)
|...+|......|+. +.+.+++.++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888 778889999885
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0031 Score=67.47 Aligned_cols=369 Identities=13% Similarity=0.121 Sum_probs=227.4
Q ss_pred HHhccCChhHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHhcCChhHH---HHHHHHHHHCCCCCCH--HHHHHHH
Q 004324 153 HCMRIRENETGFRVYEWMMQQHW-----YRFDFALATKLADYMGKERKFAKC---RDIFDDIINQGRVPSE--MTFHILI 222 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A---~~~f~~m~~~g~~pd~--~~~~~li 222 (761)
.++..+++++|.+.+..+..+.. .+.+...|+-+-+..++.-+.-.- ..++..+..+ -+|. ..|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 44567777777777776654321 244666677777766665443322 2333333332 3453 5699999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC--------------CCCCc--hhhHHHHHHHHHHH
Q 004324 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK--------------PGGLS--KYYLQQAEFIFHNL 286 (761)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~--------------~g~~~--~g~~~~A~~~~~~m 286 (761)
.-|. +.|.+++|..+|.+..+. ...+.-|+.+.++|+.- .++-. .-+++-...-|+.+
T Consensus 256 dYYI---r~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 256 DYYI---RSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHH---HhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 9999 799999999999998764 35566677777776541 00000 01344445555555
Q ss_pred HHcCCCc-C--------HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChHHH
Q 004324 287 LTSGLEI-Q--------KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG------KEVLLSVLRVCAKEGDVEDA 351 (761)
Q Consensus 287 ~~~~~~p-~--------~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a 351 (761)
+...... + ..+-.|+- ......|+..+....|.+..+. +.|- ...|..+.+.|-..|+++.|
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 5443211 0 11222332 2234456677788888887764 3332 34577888899999999999
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----------CCCC------CHHHHHHHHHH
Q 004324 352 EKTWLRLLESDNGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQER-----------LGSA------SVPAYHKIIEL 411 (761)
Q Consensus 352 ~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~p------~~~t~~~li~~ 411 (761)
+.+|++..+...+-- ..+|..-..+=.+..+++.|+++.+....- +.++ +...|...++-
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 999999988765421 345666666667778888898887765321 1111 22345555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-HHHHHHHHHHHHhc---CC
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC-RPN-RTIYGIYLESLKNA---GN 486 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~p~-~~~~~~li~~~~~~---g~ 486 (761)
--..|-++....+++.+.+..+.......|- .--+-...-++++.+++++-+.-+ .|+ ...||..+..+.+. -.
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 5566788888889999988665432222221 111233345777877777765522 233 34788887776653 37
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHH
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSA--YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~~m~~ 535 (761)
++.|..+|++..+ | ++|...-+--|+-+ =-+.|....|+.++++...
T Consensus 566 lEraRdLFEqaL~-~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 566 LERARDLFEQALD-G-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999998 5 66654333222211 1257899999999999764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0033 Score=67.36 Aligned_cols=368 Identities=12% Similarity=0.095 Sum_probs=197.8
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~ 234 (761)
.+.+++..-+..|+.....-.+.....+|.-.+......|-++-+.+++++-.+. ++..-+--|.-++ +.+++
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~---~~d~~ 185 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA---KSDRL 185 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH---hccch
Confidence 3555566666666666554334444556777777777778888888888887774 4455666777777 67888
Q ss_pred HHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc
Q 004324 235 DEACSIYNRMIQLG-----GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (761)
Q Consensus 235 ~~A~~l~~~m~~~~-----g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (761)
++|-+.+....... ..+-+-..|.-+-...++.... +.--....+++.+... -+|..-+-|..++.-|.+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~---~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK---VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIR 260 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch---hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHH
Confidence 88888777765321 0122223333333333332110 0111122222222211 233444444444455566
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------------------------------------
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCA---------------------------------------------- 343 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~---------------------------------------------- 343 (761)
.|.+++|..+|++-.+.-+ .+.-|+.+.++|+
T Consensus 261 ~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 6666666655554433211 1222222222222
Q ss_pred --------------------hcCChHHHHHHHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004324 344 --------------------KEGDVEDAEKTWLRLLES-DN----GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG 398 (761)
Q Consensus 344 --------------------~~g~~~~a~~~~~~m~~~-g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 398 (761)
..|+..+-..++.+..+. ++ ..-...|..+.+.|-..|+++.|..+|++..+-..
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 223333344444444332 11 01124567777888888888888888887766432
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 004324 399 SAS---VPAYHKIIELLCKAEETELTESLMKEFVETGM----------KP-------LMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 399 ~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------d~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+-- ..+|-.-...=.++.+++.|+++++.....-- .| ....|...++.--..|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 211 12233333333455667777777665543111 11 12344555555566678888888
Q ss_pred HHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHh---CCCHHHHHHHHHH
Q 004324 459 AFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLS---SGDFVKAEKIYDL 532 (761)
Q Consensus 459 ~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~-~t~~~li~~~~~---~g~~~~A~~~~~~ 532 (761)
+++.+.+ -..|-.+. ...--+-.+..++++.+++++-+..- -.|++ ..|++.+.-+.+ .-..+.|..+|++
T Consensus 499 vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888876 33333221 11222334556888888888766653 23454 467776665553 3468999999999
Q ss_pred HHHcCCcc
Q 004324 533 MCLKKYEI 540 (761)
Q Consensus 533 m~~~g~~~ 540 (761)
.++ |..|
T Consensus 576 aL~-~Cpp 582 (835)
T KOG2047|consen 576 ALD-GCPP 582 (835)
T ss_pred HHh-cCCH
Confidence 996 6553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00044 Score=75.44 Aligned_cols=364 Identities=9% Similarity=-0.046 Sum_probs=210.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC
Q 004324 211 RVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (761)
Q Consensus 211 ~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 290 (761)
+.-|...|..+--++. +.|+++.+-+.|++... +..-....|+.+-..+... |.-..|..+++.-....
T Consensus 319 ~qnd~ai~d~Lt~al~---~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saa------g~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS---RCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAA------GSDSKAVNLLRESLKKS 387 (799)
T ss_pred hcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHh------ccchHHHHHHHhhcccc
Confidence 4446777777777777 68899999999988775 3444455565555444443 46677888887765544
Q ss_pred CCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHh-----------cCChHHHHHHH
Q 004324 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA--GF--EEGKEVLLSVLRVCAK-----------EGDVEDAEKTW 355 (761)
Q Consensus 291 ~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~--g~--~p~~~~~~~ll~~~~~-----------~g~~~~a~~~~ 355 (761)
..|+..+.-.++.--+..+.+..++++.+-.+.... |. ......|..+--+|.. .....++.+.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 344433333333333344556666666665555441 11 1123444444444442 22245667777
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 004324 356 LRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET-GM 433 (761)
Q Consensus 356 ~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~ 433 (761)
++..+.+.. |++..|-+ --|+-.++++.|++..++..+-+-.-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 777776543 44444433 356777889999999998887766668888988888888899999999988877652 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------C-------CCCCHHHHHHHHHHHHhc
Q 004324 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----------------------K-------CRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 434 ~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~----------------------~-------~~p~~~~~~~li~~~~~~ 484 (761)
. ......=++.=...++.+++......+.. + ......++.-+..-..
T Consensus 546 N--~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-- 621 (799)
T KOG4162|consen 546 N--HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-- 621 (799)
T ss_pred h--hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--
Confidence 1 00000001111112233333222222211 0 0111223322222222
Q ss_pred CCHHHHHHHHHHhhhCCCCC--CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhh
Q 004324 485 GNIEKAEEIFNHMHSDQTIG--VN------TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~g~~~--p~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~ 556 (761)
-+.+.+..-.. |...- +. |+ ...|......+.+.+..++|...+.+... +.|-.
T Consensus 622 ~~~~~~~se~~-Lp~s~-~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~------------ 683 (799)
T KOG4162|consen 622 SQLKSAGSELK-LPSST-VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----IDPLS------------ 683 (799)
T ss_pred hhhhhcccccc-cCccc-ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----cchhh------------
Confidence 11111110000 22111 11 23 34677888889999999999988888874 33322
Q ss_pred hhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCC
Q 004324 557 KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (761)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~ 625 (761)
...|.-....+-..|..++|.+.+. +.++|+++.....++.++.+.|+-.-|.
T Consensus 684 ----------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 684 ----------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred ----------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 3333333334566789999999988 9999999999999999999999654444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0006 Score=82.62 Aligned_cols=338 Identities=9% Similarity=-0.041 Sum_probs=206.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-C----CCCHH-HHHHHHHH
Q 004324 190 MGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG-Y----QPRPS-LHNSLFRA 263 (761)
Q Consensus 190 ~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g-~----~p~~~-t~~~ll~~ 263 (761)
+...|+++.+..+++.++......+..........+. ..|++++|..++.+...... . .|... ....++..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~---~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ---SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH---HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 4456777777777776643211111111122222233 47999999999988765310 0 11111 11122222
Q ss_pred HHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCC---CC--CHHHHH
Q 004324 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK--DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF---EE--GKEVLL 336 (761)
Q Consensus 264 ~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~---~p--~~~~~~ 336 (761)
..... |++++|...+++....-...+. ...........+...|++++|...+++.....- .+ -..++.
T Consensus 461 ~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 461 VAIND-----GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHhC-----CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 22222 5999999999988763222222 112223344567788999999999988764311 11 123455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCC--CHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLES----DNG--I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQER--LGSA--SVPAY 405 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~ 405 (761)
.+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 6667788999999999998876552 221 1 2234455666777889999999999887542 1112 23345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----HHHH
Q 004324 406 HKIIELLCKAEETELTESLMKEFVETG--MKPLMP--S-Y-INLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIYG 475 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~--t-~-~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~~ 475 (761)
..+...+...|+.++|.+.+....... ...... . . ...+..+...|+.+.|..++........... ..+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 556667888999999999998886521 111111 1 1 1123445568899999999877654111111 1245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+..++...|+.++|..++++.... | ..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677888999999999999987653 2 2222 346667778889999999999999999864
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00013 Score=68.32 Aligned_cols=197 Identities=17% Similarity=0.102 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (761)
..-|--.|...|+...|.+-+++.++.++. +..+|..+...|-+.|..+.|.+-|++..+.. +-+-...|.--.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344556777888888888888888887654 56677888888888888888888888776542 1234445555666788
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 415 AEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
.|++++|...|++....-.-| -..||..+.-+..+.|+.+.|...|.+.++..+-...+.-.+.....+.|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 888888888888877742222 2457777777777888888888888888775556666777788888888999999988
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++.....+ .++..+.-..|.--...|+.+.|-++=..+..
T Consensus 196 ~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888876 47888888888888888888888777776663
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00019 Score=69.28 Aligned_cols=183 Identities=12% Similarity=0.063 Sum_probs=93.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSL 387 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 387 (761)
..+++..+..++++....| +..+.+...-...+.|+++.|.+-|+...+. |.. ....||.-+.. .+.|+.+.|+
T Consensus 124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHH
Confidence 3444444444444433221 2233333333334566666666666655554 333 34455544333 3345566666
Q ss_pred HHHHHHHHcCCC-------------CCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHH
Q 004324 388 EIFREMQERLGS-------------ASV---------------PAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMP 438 (761)
Q Consensus 388 ~~~~~m~~~g~~-------------p~~---------------~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ 438 (761)
+...++.++|++ ||+ ..+|.-...+.+.|+.+.|.+-+-.|.- ..-..|.+
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 666666555542 111 1223333334566777777777766643 22344566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
|...+.-+=. .+++.+..+-+.-+....+-...||..++-.||+..-++-|-.++-+=
T Consensus 279 TLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 279 TLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 6654432211 233444444444444423344677888888888888888887777553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00026 Score=81.67 Aligned_cols=227 Identities=14% Similarity=0.193 Sum_probs=157.0
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQA-GFEE---GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 372 (761)
.+.|+-.|......++.++|.++.++.... ++.- -.-.|.++++.-..-|.-+...++|+++.+-.- .-.+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHH
Confidence 344444445566777888888888877653 1111 123566666666667777778888888877531 2456778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL---MPSYINLTNMYLN 449 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~ 449 (761)
|...|.+.++.++|-++|+.|.++ ..-....|...+..+.++.+-+.|.+++.+.++. -|- .....-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 888888888888888888888765 3345667888888888888888888888887763 232 3344455556667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~t~~~li~~~~~~g~~~~A~ 527 (761)
.|+.+.++.+|+..+...+.-...|+.+|++=.++|..+.+..+|++....+ +.|-. ..|.-.+.-=.++|+-+.++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 7888888888888887667777888888888888888888888888888877 55532 34555555445556544443
Q ss_pred HH
Q 004324 528 KI 529 (761)
Q Consensus 528 ~~ 529 (761)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0038 Score=62.01 Aligned_cols=419 Identities=12% Similarity=0.026 Sum_probs=238.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..+++..|..+++.-...+ -.-...+---+..++...|++++|..++.-+.+..-. +...|-.|..++. -.|.+.
T Consensus 34 s~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~-~~el~vnLAcc~F---yLg~Y~ 108 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA-PAELGVNLACCKF---YLGQYI 108 (557)
T ss_pred hcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC-CcccchhHHHHHH---HHHHHH
Confidence 4567888888888776554 1212233344567778999999999999988876544 4445544544444 268888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (761)
+|..+-... |+....+-++-.++...+ +-++-..+...+...- -.-+.++......-.+.+
T Consensus 109 eA~~~~~ka-------~k~pL~~RLlfhlahkln-----dEk~~~~fh~~LqD~~-------EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 109 EAKSIAEKA-------PKTPLCIRLLFHLAHKLN-----DEKRILTFHSSLQDTL-------EDQLSLASVHYMRMHYQE 169 (557)
T ss_pred HHHHHHhhC-------CCChHHHHHHHHHHHHhC-----cHHHHHHHHHHHhhhH-------HHHHhHHHHHHHHHHHHH
Confidence 887765433 555566666666665442 5555555555553211 111111111111224789
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCh---------
Q 004324 316 ISLLKKEMQQAGFEEGKEVLLS-VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI--GEF--------- 383 (761)
Q Consensus 316 a~~l~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~--------- 383 (761)
|++++.+.... .|+-...|. +.-+|.+..-++-+.+++.--.+.-+. +...-|.......+. |+.
T Consensus 170 AIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 170 AIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 99999988764 345555553 344667888888888888766554322 333444332222221 222
Q ss_pred ------------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 384 ------------------------MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 384 ------------------------~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
+.|++++--+.+. -| ..--.|+--|.+.+++.+|..+.+++.- ..|-...
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Eyi 320 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYI 320 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHH
Confidence 2233322222211 11 1222344457788889888887766432 2233333
Q ss_pred HHHHHHHH-----HhcCCHHHHHHHHHHHHh-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 440 YINLTNMY-----LNLGMHDRLHLAFSECLE-KCR-PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 440 ~~~li~~~-----~~~g~~~~a~~~~~~m~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
.-.++.+- .....+.-|.+.|.-.-+ +.. ..+.--.++.+.+.-..++++.+-+++....- +..|..---.
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N 398 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLN 398 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhH
Confidence 33333221 112235556666655443 222 22233455666666667788888888877664 2233333335
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhh-hhhhhhH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLC-IESDEKR 591 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~ 591 (761)
+..+++..|.+.+|+++|-++. | |++ .|..+|.++|.-|- +.+..+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is--~----~~i--------------------------kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRIS--G----PEI--------------------------KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhc--C----hhh--------------------------hhhHHHHHHHHHHHHhcCCchH
Confidence 6788999999999999998775 2 221 14677888777665 4567788
Q ss_pred HHHHHH-hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhhccCccceee
Q 004324 592 KRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAY 651 (761)
Q Consensus 592 a~~~~~-~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~g~~Pd~~ty 651 (761)
|..++- .....+.-+..-++++.|.+++.+--|.+. |+.+.. +.|+.-.|
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKA--------Fd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKA--------FDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHc--cCCCcccc
Confidence 888765 333223334455678888888876665553 554433 45555555
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00086 Score=62.93 Aligned_cols=203 Identities=10% Similarity=0.041 Sum_probs=165.8
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG 381 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 381 (761)
+..+|...|+...|..-+++..+. .| +..++..+...|-+.|..+.|.+-|+...+..+. +..+.|..-..+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 347888999999999999998876 34 4567888999999999999999999999988765 6678888899999999
Q ss_pred ChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 382 EFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 460 (761)
++++|...|++....- ..--..||..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|+.-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999887651 11124577777777888999999999999998854 223567778888899999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
+....+..++..+.-..|..-.+.|+.+.|-++=..+... -|...-|-.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~---fP~s~e~q~ 245 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL---FPYSEEYQT 245 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHh
Confidence 9988755689998888899999999999988887777765 255554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0031 Score=69.12 Aligned_cols=318 Identities=12% Similarity=0.072 Sum_probs=194.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC--------CCCHHHHHHHHH
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GR--------VPSEMTFHILIV 223 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~--------~pd~~~~~~li~ 223 (761)
.+...|+.+.|.+-.+.+. +..+|..+..++.+..+++-|.-.+-.|... |. .|+.. .+-..
T Consensus 737 fyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHHH
Confidence 4557888898887766654 3468899999999999999888777777542 11 23221 22222
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004324 224 AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303 (761)
Q Consensus 224 ~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 303 (761)
+++- +.|.+++|+.+|++-++. -|++-+.... |.+++|.++-+.=-.-.+. .||....
T Consensus 808 vLAi--eLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~-----g~w~eA~eiAE~~DRiHLr---~Tyy~yA- 865 (1416)
T KOG3617|consen 808 VLAI--ELGMLEEALILYRQCKRY-----------DLLNKLYQSQ-----GMWSEAFEIAETKDRIHLR---NTYYNYA- 865 (1416)
T ss_pred HHHH--HHhhHHHHHHHHHHHHHH-----------HHHHHHHHhc-----ccHHHHHHHHhhccceehh---hhHHHHH-
Confidence 3332 579999999999998874 2455555554 5899998886643322222 3333322
Q ss_pred HHhhccCCCHHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 004324 304 LHSYQDNIDKERISLLKKEM----------QQAG---------FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m----------~~~g---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 364 (761)
.-+...+|.+.|++.|++- .... -..|...|.-.-.-+-..|+++.|..++....
T Consensus 866 -~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 866 -KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred -HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 3334456778887777632 2111 01133344444444456778888887776543
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li 444 (761)
-|-+++...|-.|+.++|-++-++-. |....-.|...|-..|++.+|...|-+.+. |...|
T Consensus 940 ----D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 940 ----DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred ----hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 36677888888888888888766532 556666788888888888888888877543 33334
Q ss_pred HHHHhcC---------------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------hhhCC
Q 004324 445 NMYLNLG---------------MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH--------MHSDQ 501 (761)
Q Consensus 445 ~~~~~~g---------------~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~~g 501 (761)
+.|-..+ +.-.|-++|++.- .-..--+..|-++|.+.+|+++--+ ++.+.
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 3332222 2223333343321 0112335567888888888776321 12222
Q ss_pred CCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 502 TIG--VNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 502 ~~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+. .|....+--..-++.+.++++|..++-..+
T Consensus 1074 -Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1074 -LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 255666666677778888888888877664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-05 Score=82.13 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=134.7
Q ss_pred hhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004324 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 385 (761)
-+.-.|.+..++.-.+ .....-..+.....-+.+++...|+.+.+. .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3344566777765444 221111113444567778889999877544 3444433 5666655444433333244455
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 386 SLEIFREMQERLGSASVPAYHK-IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
++.-+++.......++..++.. ....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544433333323333332 224556679999999888642 456777888999999999999999999998
Q ss_pred hCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 465 EKCRPNRTIYG---IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 465 ~~~~p~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+. ..|....+ +.+..+.-.+.+.+|..+|+++.++ .+++..+.+.+..++...|++++|.+++.+..+
T Consensus 159 ~~-~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 159 QI-DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred hc-CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 63 33433222 2233333344799999999999887 578999999999999999999999999999874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0073 Score=63.56 Aligned_cols=409 Identities=14% Similarity=0.176 Sum_probs=200.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004324 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (761)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t 256 (761)
+.|..+|+.||.-+... .++++++.+++|...- .-....|..-|.+-. +..+++.+..+|.+.... .-+...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El---~skdfe~VEkLF~RCLvk---vLnlDL 88 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIEREL---ASKDFESVEKLFSRCLVK---VLNLDL 88 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH---HhhHhH
Confidence 66888999999887655 8999999999988752 225567888888888 688999999999988764 244556
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHHHHHH-HHHcCCCcCH-HHHHHHHH-HHh------hccCCCHHHHHHHHHHHHHcC
Q 004324 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHN-LLTSGLEIQK-DIYSGLIW-LHS------YQDNIDKERISLLKKEMQQAG 327 (761)
Q Consensus 257 ~~~ll~~~~~~~g~~~~g~~~~A~~~~~~-m~~~~~~p~~-~~~~~li~-~~~------~~~~g~~~~a~~l~~~m~~~g 327 (761)
|..-|+-.-+..+... |.-....+-|+- +.+.|..+-. .+++-.+. +.+ +..+.+.+.+.++++++...-
T Consensus 89 W~lYl~YVR~~~~~~~-~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLF-GYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHccCcc-hHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 6666654443332211 211122222222 3344433211 11121111 011 223334566666676665432
Q ss_pred CCC------CHHHHHHHHHHH-------HhcCChHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHHHH
Q 004324 328 FEE------GKEVLLSVLRVC-------AKEGDVEDAEKTWLRLLE--SDNGIPTP---------------AFVYKMEAY 377 (761)
Q Consensus 328 ~~p------~~~~~~~ll~~~-------~~~g~~~~a~~~~~~m~~--~g~~~~~~---------------~~~~li~~~ 377 (761)
+.- |-..|-.=|+.. -+...+-.|+++++++.. .|+..... .|-.+|.-=
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 211 111111111111 123345556666666543 23221111 132222211
Q ss_pred HHcCC------h--HHHHHHHHH-HHHcCCCCCHHHH-HHHH----HHHHhcCC-------HHHHHHHHHHHHHcCCCCC
Q 004324 378 AKIGE------F--MKSLEIFRE-MQERLGSASVPAY-HKII----ELLCKAEE-------TELTESLMKEFVETGMKPL 436 (761)
Q Consensus 378 ~~~g~------~--~~A~~~~~~-m~~~g~~p~~~t~-~~li----~~~~~~g~-------~~~A~~l~~~m~~~g~~pd 436 (761)
-.++. . ....-++++ |.--+..|++.-. ..-+ +.+...|+ .+++..+++.....-..-+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 11100 0 001111111 1122333332211 1111 11111221 4555666665555333334
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 437 MPSYINLTNMYLNLG---MHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 437 ~~t~~~li~~~~~~g---~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
..+|..+.+-=-..- ..+.....+++++. ...| ..+|-.+++.-.+..-++.|..+|.+..+.+..+-++..++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 444444433211111 24445555555544 2222 34556666666666666667777776666662222556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHh-hhh-----hhhcccccCCCchhhHHhHHHHHhhhhhh
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS-LNR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCI 585 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~-l~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 585 (761)
+++.-||. ++.+-|.++|+.=+. .++-+|.....+...+. ++. .++++.....++++...-+|..+|.--..
T Consensus 407 A~mEy~cs-kD~~~AfrIFeLGLk-kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYCS-KDKETAFRIFELGLK-KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHhc-CChhHHHHHHHHHHH-hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 66665553 455666666666552 45555555444444332 211 22222222244555557889999988888
Q ss_pred hhhhhHHHHHHH
Q 004324 586 ESDEKRKRHMIR 597 (761)
Q Consensus 586 ~g~~~~a~~~~~ 597 (761)
-|++..+..+-+
T Consensus 485 vGdL~si~~lek 496 (656)
T KOG1914|consen 485 VGDLNSILKLEK 496 (656)
T ss_pred cccHHHHHHHHH
Confidence 999998887766
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00024 Score=81.84 Aligned_cols=205 Identities=11% Similarity=0.148 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGI---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAY 405 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 405 (761)
+...|-.-|.-....+++++|+++.++.+.. +++- -...|.++++.-..-|.-+...++|++..+. -| ...|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3566778888889999999999999998865 2221 1346888888888888889999999999876 24 4558
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHh
Q 004324 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKN 483 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~ 483 (761)
..|...|.+.+..++|-++++.|.+.- .-....|...++.+.+...-+.|..++.+.++-.+. .+..-.-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999852 245678999999999999999999999998874433 44455556677778
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Q 004324 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (761)
+|+.+.+..+|+...... +--...|+..|+.=.++|+.+.+..+|++.+..++.|.
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 999999999999998873 45677999999999999999999999999998776554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0066 Score=68.17 Aligned_cols=258 Identities=10% Similarity=0.059 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (761)
+++|..+|+... .+....+.||. ..+.++.|.+.-++.. ...+|+.+..+-.+.|.+.+|.+-|-+
T Consensus 1064 yEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 455555554321 23333344433 3344555544433322 346788888888888888888877643
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
. -|...|.-+|....+.|.+++-.+.+...++..-.|.+. +.||-+|++.+++.+..++. .-||..
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi------~gpN~A 1195 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI------AGPNVA 1195 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh------cCCCch
Confidence 3 266778888888888888888888887777766666544 46788888888877766544 357777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
....+.+-|...|.++.|.-+|.. +.-|..|...+...|.+..|...-++.- +..++...+.+.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFAC 1259 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHH
Confidence 777777778777877777766643 3346666666677777777766555442 222333222211
Q ss_pred hhhhh--hhc-ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 553 SLNRK--EVK-KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 553 ~l~~~--~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
.-+++ +.. ..+..-. ..--.--|+.-|...|-+++-..+++ ++++-.+.+.|.-|+.+|++.
T Consensus 1260 vd~~EFrlAQiCGL~iiv----hadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1260 VDKEEFRLAQICGLNIIV----HADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hchhhhhHHHhcCceEEE----ehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11110 000 0000000 02223446777888888888888888 777777777888888888874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0035 Score=75.97 Aligned_cols=261 Identities=12% Similarity=0.001 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHHcCC------CcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGL------EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCA 343 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~------~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~~ 343 (761)
|++++|...+......-- .+....-........+...|++++|...+++....--..+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 488999888887754311 11111111222335566789999999999987663111122 23455666778
Q ss_pred hcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHH
Q 004324 344 KEGDVEDAEKTWLRLLES----DNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGS--A-SVPAYHKIIEL 411 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~li~~ 411 (761)
..|++++|...+++.... |.. ....++..+...+...|++++|...+++... .|.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999887653 211 1123455567778889999999999887654 2221 1 22345555666
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHH-----HHHHHH
Q 004324 412 LCKAEETELTESLMKEFVET--GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIY-----GIYLES 480 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~--g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~-----~~li~~ 480 (761)
+...|++++|...+.+.... ...+ ...++..+...+...|+.+.|.+.+..... ........+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77889999999999887652 1122 234455566778889999999999988754 111111111 112345
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+...|+.+.|.+++....... ..... ..+..+..++...|++++|..++++...
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566899999999988765532 11111 1245667788899999999999998875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0095 Score=63.46 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=32.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 576 IGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 576 ~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
|.-+...=.++|+.++|...++ ....|++....+.++..|++.
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 3333333446699999999998 788999999999999888863
|
|
| >PF03161 LAGLIDADG_2: LAGLIDADG DNA endonuclease family; InterPro: IPR004860 This is a family of site-specific DNA endonucleases encoded by DNA mobile elements | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-07 Score=85.99 Aligned_cols=86 Identities=34% Similarity=0.583 Sum_probs=60.7
Q ss_pred ccccCCcc-cchhhhhhccCccceeeeeeeCCc-c-cCCCcEEEEecc-CHHHHHHHHHHHh-hcCCceeEeecC--cEE
Q 004324 627 KFWPKGRL-VIPKLIHRWLTPRALAYWFMYGGH-R-TSVGDILLKLKV-SSEGIALVFKTLK-ARSLDCRVKKKG--RVF 699 (761)
Q Consensus 627 ~~~~~a~~-~~~~m~~~g~~Pd~~ty~~li~g~-~-~~~~~~~~~~~g-~~~e~~~l~~~m~-~~gl~~~~~~~~--~~~ 699 (761)
.|+.++.+ +++..+++.++|-+++||+|.||. . ..++....+|++ +.+|+..|.+.|. ++||++++++++ .+|
T Consensus 86 ~fY~~~~Kk~ip~~I~~~LTp~~LA~W~mdDG~~~~~~~~g~~l~T~sFt~~Ev~~L~~~L~~kf~l~~~i~~~~~~~~y 165 (178)
T PF03161_consen 86 LFYPNGKKKIIPENIHDYLTPLALAYWFMDDGYSKSKKGRGIRLCTNSFTKEEVERLQNILKTKFGLKCSIHKHGKKNQY 165 (178)
T ss_dssp HHBSSSSB---TTHHHHH--HHHHHHHHHHHE-STT-S---EEE--TTS-HHHHHHHHHHHHHHH---EEEEEET--TEE
T ss_pred eeeeCCCcccChHHHHHhcCHHHhhheeecCCeeecCCCCcEEEEECCCCHHHHHHHHHHHHHHhCeEEEEEEcCCCceE
Confidence 45556665 999999999999999999999992 1 335555666666 9999999999995 679999999999 899
Q ss_pred EEEEeCCCHHHHH
Q 004324 700 WIGFLGSNSTLFW 712 (761)
Q Consensus 700 ~i~i~~~~~~~~~ 712 (761)
+|+|+++|.+.|+
T Consensus 166 ~i~i~~~s~~~f~ 178 (178)
T PF03161_consen 166 RIYIPAKSMDKFR 178 (178)
T ss_dssp EEEE-GGGHHHHH
T ss_pred EEEEeHHHHhhhC
Confidence 9999999999885
|
Similar to the homing endonuclease LAGLIDADG/HNH domain (IPR001982 from INTERPRO), the members of this family are also LAGLIDADG endonucleases. ; GO: 0004519 endonuclease activity; PDB: 3OOR_A 3OOL_A 3C0W_A 1R7M_A 3C0X_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0004 Score=75.78 Aligned_cols=242 Identities=13% Similarity=0.147 Sum_probs=153.8
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCC-----
Q 004324 178 FDFALATKLAD--YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGY----- 250 (761)
Q Consensus 178 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~----- 250 (761)
-|..|.-++++ .|..-|+.+.|.+-.+-+.. ...|..|.+.|+ +..+++-|.-.+..|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McV---kT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCV---KTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhh---hhccccHHHHhhhhhhhhhhHHHHHH
Confidence 36777777775 47788999999988877754 478999999999 788999888888888653221
Q ss_pred ---CCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC
Q 004324 251 ---QPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327 (761)
Q Consensus 251 ---~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g 327 (761)
.|+...-. ...++-.. |.+++|+.+|++-...+ ..| ..|...|.+++|.++-+.=-+-.
T Consensus 795 a~q~~~e~eak--vAvLAieL-----gMlEeA~~lYr~ckR~D------LlN-----KlyQs~g~w~eA~eiAE~~DRiH 856 (1416)
T KOG3617|consen 795 AQQNGEEDEAK--VAVLAIEL-----GMLEEALILYRQCKRYD------LLN-----KLYQSQGMWSEAFEIAETKDRIH 856 (1416)
T ss_pred HHhCCcchhhH--HHHHHHHH-----hhHHHHHHHHHHHHHHH------HHH-----HHHHhcccHHHHHHHHhhcccee
Confidence 23221111 11222222 58999999999876533 222 55778889999988865432222
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------HhCCC---------CCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL----------LESDN---------GIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m----------~~~g~---------~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
+ ..||-.-..-+-..++++.|.+.|++. ....+ ..|...|.--..-+-..|+++.|+.
T Consensus 857 L---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 857 L---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred h---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 2 234444445555677788777777642 11111 0122233333333334567777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
+|...+ -|-+++...|-.|+.++|-++-++ .| |....-.|.+.|...|++.+|..+|.+..
T Consensus 934 ~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 934 FYSSAK---------DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhh---------hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 766443 255677777778888888776544 22 56666778888888888888888777643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0094 Score=63.49 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHh-CCCCCHHHHHHHHHHHHhcCCHH
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFS--------ECLE-KCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~--------~m~~-~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
...|.+++...-+..-.-...+.-.++......|+++.|.+++. .+.+ +..| .+..++...|.+.+.-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCc
Confidence 45555555554443211123444455555666666666666666 3333 3333 33344555555555555
Q ss_pred HHHHHHHHhhhCCC-CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQT-IGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 489 ~A~~l~~~m~~~g~-~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
-|..++.+....-. -.+. ..+|.-+...-.++|+-++|..+++++.+
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 55555544432100 0011 12233333333456666677777776664
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.02 Score=64.09 Aligned_cols=221 Identities=15% Similarity=0.138 Sum_probs=129.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..+++..|++..+.+.++.+-.+-..++.+|+ +.|.|+.++|..+++.....+.. |..|..++-..|. +.++.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~---d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR---DLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH---HHhhhh
Confidence 45677778877777777642222223333332 34778888888887777665544 7777777777777 678888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHH----HHHHHHHHHHHcCCCcCHHHHHHHHH-HHhhccC
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ----QAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDN 310 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~----~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~ 310 (761)
+|..+|++..+ .-|+......+..++++. +.+. -|.+++... |...-|-|.+. +......
T Consensus 95 ~~~~~Ye~~~~---~~P~eell~~lFmayvR~------~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 95 EAVHLYERANQ---KYPSEELLYHLFMAYVRE------KSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHHHh---hCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHHhcc
Confidence 88888888775 347766666666677664 2333 344444432 22222222211 1111000
Q ss_pred --------CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 311 --------IDKERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTW-LRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 311 --------g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
--..-|.+.++.+.+.+ -.-+..-.-.-+..+...|++++|..++ ....+.-...+...-+--++.+.+.
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 01234555666665544 2112222223334455778888888888 3444444333455555678888888
Q ss_pred CChHHHHHHHHHHHHcC
Q 004324 381 GEFMKSLEIFREMQERL 397 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g 397 (761)
+++.+..++-.++..+|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 89888888888888775
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00026 Score=70.46 Aligned_cols=186 Identities=13% Similarity=-0.003 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-ASV-PAYH 406 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~ 406 (761)
....+-.+...+.+.|++++|...++++.+..+. | ...++..+..+|.+.|++++|...|+++.+..-. |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566777788888899999999999888876542 1 1246677888888999999999999988765221 111 1344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 407 KIIELLCKA--------EETELTESLMKEFVETGMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 407 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
.+..++.+. |+.++|.+.++.+.+.. |+. ..+..+..... ... .. ....-.+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH-------HHHHHHH
Confidence 444455443 66778888888887653 332 22211111100 000 00 0111245
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...|.+.|++++|...+++......-.| ....+..+..++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678899999999999999887631112 356888999999999999999999998874
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0017 Score=66.89 Aligned_cols=232 Identities=12% Similarity=0.020 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC-ChHHHH
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEG-DVEDAE 352 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~g-~~~~a~ 352 (761)
++.+|...|+.+... .+..++|+.+..++.+. .|+. .+|+.--.++.+.| +++++.
T Consensus 35 ~~~~a~~~~ra~l~~--------------------~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 35 EFREAMDYFRAVYAS--------------------DERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred HHHHHHHHHHHHHHc--------------------CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHH
Confidence 667777777666543 33467788888877764 3433 34555445555666 578999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEF--MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 353 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
..++.+.+..++ +..+|+..-..+.+.|+. ++++.+++++.+..- -|..+|+...-++...|++++|++.++++++
T Consensus 93 ~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 93 DFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999998888765 556777665556666653 678888888887643 3778888888888888999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhh
Q 004324 431 TGMKPLMPSYINLTNMYLNL---GM----HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA----GNIEKAEEIFNHMHS 499 (761)
Q Consensus 431 ~g~~pd~~t~~~li~~~~~~---g~----~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~ 499 (761)
.... |..+|+.....+.+. |. .+.......+++...+-|...|+-+...|... ++..+|.+.+.+...
T Consensus 171 ~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 171 EDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7633 455666555555444 22 24566666677666678889999998888873 445678888888776
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC------------------CHHHHHHHHHHH
Q 004324 500 DQTIGVNTRSCNIILSAYLSSG------------------DFVKAEKIYDLM 533 (761)
Q Consensus 500 ~g~~~p~~~t~~~li~~~~~~g------------------~~~~A~~~~~~m 533 (761)
.+ +.+......|+..|+... ..++|.++++.+
T Consensus 250 ~~--~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 250 KD--SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cc--CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 54 346778888888888643 235677777777
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00018 Score=75.96 Aligned_cols=221 Identities=15% Similarity=0.062 Sum_probs=161.2
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
+.+.|++.+|.-.|+..++.... +...|--|-..-+..++-..|+..+.+..+..+. +..+.-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 45778888888888887776322 4667777777777888888888888888887754 677888888889999999999
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 387 LEIFREMQERLGS--------ASVPAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLH 457 (761)
Q Consensus 387 ~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~~g~~~~a~ 457 (761)
++.|+.-.....+ ++...-+. +.+.....+....++|-++.. .+..+|...+..|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998887553210 00000000 111122223344555555544 555577778888888888889999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..|+..+..-+-|...||-|...++...+.++|..-|++..+ ++|+- .++..|.-+|...|.+++|.+.|-..+
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998876577888999999999999999999999999888 45764 466777778899999999988877665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0072 Score=63.71 Aligned_cols=364 Identities=14% Similarity=0.087 Sum_probs=208.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS-EMTFHILIVAYLSAPVQ 231 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd-~~~~~~li~~~~~~~~~ 231 (761)
+....|+++.|...|...+... ++|.+.|+--..+|++.|++.+|++=-.+-.+ +.|+ .-.|+..-.++. -.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~---~l 83 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF---GL 83 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH---hc
Confidence 3447899999999999999886 67999999999999999999999876655554 4565 356888888877 58
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH----HcCCCcCHHHHHHHHH---
Q 004324 232 GCLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL----TSGLEIQKDIYSGLIW--- 303 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~li~--- 303 (761)
|++++|+.-|.+-.+. .|+ ...++-+..+...... .++.-..-.++..+. ......+. .|..++.
T Consensus 84 g~~~eA~~ay~~GL~~---d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~-~~~~~l~~~~ 156 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEK---DPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDP-AYVKILEIIQ 156 (539)
T ss_pred ccHHHHHHHHHHHhhc---CCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccH-HHHHHHHHhh
Confidence 9999999999998874 354 3444444444411000 000000000000000 00000000 0000000
Q ss_pred -----HHhhccCCCHHHHHHHHH-----HHHHcCC-------CC------------C----------HHHHHHHHHHHHh
Q 004324 304 -----LHSYQDNIDKERISLLKK-----EMQQAGF-------EE------------G----------KEVLLSVLRVCAK 344 (761)
Q Consensus 304 -----~~~~~~~g~~~~a~~l~~-----~m~~~g~-------~p------------~----------~~~~~~ll~~~~~ 344 (761)
+..+.+......+...+. .+...|. .| | ..-..-+.++.-+
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 011111001111111110 0000010 11 1 1123456666667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCC
Q 004324 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK-------IIELLCKAEE 417 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------li~~~~~~g~ 417 (761)
..+++.|.+-+....+.. -+..-++..-.+|...|...++...-..-.+.|-. ...-|+. +-.+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 777777777777776665 24445555666677777666655555544443321 1112222 2234555666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHH
Q 004324 418 TELTESLMKEFVETGMKPLMPSYI-------------------------NLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (761)
.+.|...|.+.......||..+-. .=...+.+.|++..|.+.+.++++..+-|..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 777777777766544444432211 1134566778888888888888876677888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|....-+|.+.|.+..|++-.+...+.. ++....|.-=..++....+|++|.+.|++-++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888877777764 33334444444445555677888888877765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00092 Score=68.93 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=129.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 375 EAYAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
..+.+.++.++|+.+..++.+. .| +..+|+.--..+...| .+++++..++++.+.. .-+..+|+.....+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 3334445566666666666553 12 2233444444444445 4566666666666643 2233445544444444454
Q ss_pred --HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC---CH----
Q 004324 453 --HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG---DF---- 523 (761)
Q Consensus 453 --~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g---~~---- 523 (761)
.+++..+++.+.+.-+.|..+|+...-.+.+.|++++|++.++++++.+ +-|...|+.....+.+.| ..
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccH
Confidence 2566777777777667888999999888889999999999999999876 346777877766665542 22
Q ss_pred HHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhh----hhhhHHHHHHH--
Q 004324 524 VKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE----SDEKRKRHMIR-- 597 (761)
Q Consensus 524 ~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~-- 597 (761)
++++++..++++ .+|+ |...|+.+.+.+... +...++.....
T Consensus 200 e~el~y~~~aI~----~~P~----------------------------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 200 DSELKYTIDAIL----ANPR----------------------------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHHHHHHHH----hCCC----------------------------CcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 345555555553 2332 367777777766653 23344655555
Q ss_pred hhccccchhhHHHHHHHHHh
Q 004324 598 FQFNENSRMHSVLRRYLYDQ 617 (761)
Q Consensus 598 ~~l~p~~~~~~~~l~~~~~~ 617 (761)
+..+|.++.+...|+++|+.
T Consensus 248 ~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred hcccCCcHHHHHHHHHHHHh
Confidence 56678888888899999985
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0015 Score=70.37 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=108.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004324 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418 (761)
Q Consensus 339 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 418 (761)
|.+......|.+|..+++.+...... ..-|.-+.+.|+..|+++.|.++|.+- ..++-.|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 34455667777777777766665432 234566677777788888888777643 1244567777788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 419 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
+.|.++-.+. .|-......|.+-..-.-+.|++.+|.+++-.+- .|+. -|.+|-+.|..+..+++.++-.
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 8777765443 2333344555555555667777777777665543 4543 3677778887777777766543
Q ss_pred hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 499 SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 499 ~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..- -..|...+..-|-..|+..+|+.-|-+..
T Consensus 878 ~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 878 GDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhh----hhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 221 23455666677777788887777766554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.029 Score=63.28 Aligned_cols=334 Identities=14% Similarity=0.082 Sum_probs=164.5
Q ss_pred CcchhhhhHHHhccCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004324 144 QEDGTYLAVHCMRIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (761)
Q Consensus 144 p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li 222 (761)
|+.++.+.-+....+-+.+-.++++.++-.. .+.-+...-|.||-.-.|. +.....++.+++...+. |++. +
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~ia--~--- 1056 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PDIA--E--- 1056 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hhHH--H---
Confidence 4444444445555555555555555554322 1222233333333222222 23334444444443321 1211 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004324 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (761)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (761)
... .++-+++|..+|++.. .+....+.+|... +.++.|.+.-++.. .+.+++.+.
T Consensus 1057 -iai---~~~LyEEAF~ifkkf~------~n~~A~~VLie~i---------~~ldRA~efAe~~n------~p~vWsqla 1111 (1666)
T KOG0985|consen 1057 -IAI---ENQLYEEAFAIFKKFD------MNVSAIQVLIENI---------GSLDRAYEFAERCN------EPAVWSQLA 1111 (1666)
T ss_pred -HHh---hhhHHHHHHHHHHHhc------ccHHHHHHHHHHh---------hhHHHHHHHHHhhC------ChHHHHHHH
Confidence 111 2444566666665431 3334444444332 24455544444332 234444444
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
.+..+.|...+|.+-|-+. -|...|.-++..+.+.|.+++-.+.+....++.-+|.+ =+.||-+|++.++
T Consensus 1112 --kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1112 --KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNR 1181 (1666)
T ss_pred --HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhch
Confidence 4445555555555544321 25556666666666677766666666555554444433 2456666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+.+-.++. .-||+.-...+-.-|...|.++.|.-++... .-|.-|...+...|.+..|...-++
T Consensus 1182 l~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1182 LTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 65554443 1255555556666666666666665555432 2344455555555555555443332
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCh
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 542 (761)
..+..||.-+-.+|...+.+.-| +|...+ +-....-..-++.-|-..|.++|-+.+++. |.+...
T Consensus 1246 -----Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~-iivhadeLeeli~~Yq~rGyFeElIsl~Ea----~LGLER 1310 (1666)
T KOG0985|consen 1246 -----ANSTKTWKEVCFACVDKEEFRLA-----QICGLN-IIVHADELEELIEYYQDRGYFEELISLLEA----GLGLER 1310 (1666)
T ss_pred -----ccchhHHHHHHHHHhchhhhhHH-----HhcCce-EEEehHhHHHHHHHHHhcCcHHHHHHHHHh----hhchhH
Confidence 34556666666666655544333 343333 333444556677777777777777766654 445555
Q ss_pred HHHHHHHH
Q 004324 543 AWMEKLDY 550 (761)
Q Consensus 543 ~~~~~~~~ 550 (761)
..+..+.+
T Consensus 1311 AHMgmfTE 1318 (1666)
T KOG0985|consen 1311 AHMGMFTE 1318 (1666)
T ss_pred HHHHHHHH
Confidence 54444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00055 Score=68.14 Aligned_cols=180 Identities=13% Similarity=0.056 Sum_probs=127.7
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHH
Q 004324 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVY 372 (761)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~ 372 (761)
..+..+..+...|+++.|...|++..... |+ ..++..+..++.+.|++++|...++.+.+..+.... .++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 33444577888999999999999987753 33 246677888999999999999999999987654222 24455
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 373 KMEAYAKI--------GEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (761)
Q Consensus 373 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 443 (761)
+...|.+. |+.++|.+.|+.+... .|+. ..+..+.... . .... .. .....+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~~------~~--------~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRNR------LA--------GKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHHH------HH--------HHHHHH
Confidence 55556554 7889999999999876 2443 2332222111 0 0000 00 112256
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKC---RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
...|.+.|+.++|...+....+.. +.....+..+...|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667899999999999999988632 334678999999999999999999999988775
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00075 Score=65.28 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=126.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
..+++..++.+.++....| +..+.+.......+.|+.++|++-|....+- |.. ....||..+.- .+.|+.+.|+
T Consensus 124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHH
Confidence 5788888888888876544 4455555556677899999999999987764 555 46788877654 4668999999
Q ss_pred HHHHHHHHcCCCC-------------CH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHH
Q 004324 423 SLMKEFVETGMKP-------------LM---------------PSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRT 472 (761)
Q Consensus 423 ~l~~~m~~~g~~p-------------d~---------------~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~ 472 (761)
++..+++++|++- |+ ..+|.-...+.+.++.+.|.+.+-.|.- .-..|++
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 9999999988652 21 1223333346677899999999998863 3455666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
|...+.-.=+ .|++.+..+-+.-+...+.+ -..||..++-.||++.-++-|..++-+
T Consensus 279 TLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf--P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 279 TLHNQALMNM-DARPTEGFEKLQFLLQQNPF--PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHHhcc-cCCccccHHHHHHHHhcCCC--ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6655433222 24454444445555554423 457999999999999999999888765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00094 Score=63.99 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 004324 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL-KNAGN--IEKAE 491 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~-~~~g~--~~~A~ 491 (761)
.++.+++...++...+.. +.|...|..|...|...|++++|...|++..+..+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555555433 345556666666666666666666666666654455666666666643 45555 36677
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+++++..+.+ +-+..++..+...+.+.|++++|+..|+++.+
T Consensus 131 ~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777766654 33556666666666677777777777777664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00018 Score=75.91 Aligned_cols=217 Identities=10% Similarity=0.030 Sum_probs=167.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (761)
Q Consensus 342 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (761)
+.+.|++.+|.-.|+..++.++. +...|--|-......++-..|+..+++..+.. +-|....-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45789999999999999998865 78899999999999999999999999888752 22566677888889999999999
Q ss_pred HHHHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 422 ESLMKEFVETGMK-----P---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 422 ~~l~~~m~~~g~~-----p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+..++..+....+ + +...-.. ..+.....+....++|-++.. +..+|..++..|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999998764311 0 1000000 122223345667777877775 45589999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhh
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (761)
..|+...... +-|...||-|-..++...+.++|+..|++.++ +.|..
T Consensus 451 Dcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~y--------------------------- 497 (579)
T KOG1125|consen 451 DCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGY--------------------------- 497 (579)
T ss_pred HHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCe---------------------------
Confidence 9999999864 45678999999999999999999999999985 34432
Q ss_pred HHhHHHHHhhhhhhhhhhhHHHHHH
Q 004324 572 RENLIGLLLGGLCIESDEKRKRHMI 596 (761)
Q Consensus 572 ~~~~~~~ll~~~~~~g~~~~a~~~~ 596 (761)
+.++..|.-.|...|.+++|...+
T Consensus 498 -VR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 498 -VRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred -eeeehhhhhhhhhhhhHHHHHHHH
Confidence 344455666788888888877554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-06 Score=54.03 Aligned_cols=33 Identities=39% Similarity=0.681 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 436 (761)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.8e-06 Score=53.56 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS 401 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (761)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=77.60 Aligned_cols=210 Identities=12% Similarity=0.080 Sum_probs=165.5
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
..+.+.|-...|..+|++. ..|.-+|-+|+..|+..+|..+...-.++ +||...|..+.+.....--++
T Consensus 406 ell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 3345566677777777753 45677889999999999999998888873 468888999988888888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
+|.++++....+ +-..+-.-..+.++++++.+.|+.-.+.. .--..+|-.+..+..+.+++..|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 999999876443 11111122234788999999998877643 2245688888888889999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+-+-+...||.+-.+|.+.|+-.+|...+.+..+-+ . -+...|...+....+.|.+++|++.+++|..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-Y-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-C-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8777788999999999999999999999999998865 2 3455677777778899999999999999875
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=63.60 Aligned_cols=127 Identities=8% Similarity=0.026 Sum_probs=86.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGM--HDRL 456 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~g~--~~~a 456 (761)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. .-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655542 3466677777777777777777777777777743 2355666666665 355565 4778
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
.+++++..+..+.+..++..+...+.+.|++++|...|+++.+.. +|+..-+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~--~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN--SPRVNRT 181 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHH
Confidence 888877777556677788888888888888888888888887763 5555433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=64.78 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+...+...|++++|...|+...... +.+...|..+...+.+.|++++|+..|++..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444445555555555555554432 2344455555555555555555555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=52.06 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 400 (761)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0036 Score=72.07 Aligned_cols=220 Identities=18% Similarity=0.190 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCc
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p 293 (761)
+...|-.|+..+- +.+++++|.++.+.-.+ ..|+...+-.....+.... ++..++..+ .+.
T Consensus 30 n~~a~~~Li~~~~---~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~-----~~~~~~~lv--~~l------ 90 (906)
T PRK14720 30 KFKELDDLIDAYK---SENLTDEAKDICEEHLK---EHKKSISALYISGILSLSR-----RPLNDSNLL--NLI------ 90 (906)
T ss_pred hHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhh-----cchhhhhhh--hhh------
Confidence 5567788888886 57888888888886665 3465554444443333222 233333333 111
Q ss_pred CHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004324 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373 (761)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 373 (761)
.......++..+..+...|...+ -+...+..+..+|-+.|+.++|.++++++.+..+. |..+.|.+
T Consensus 91 -----------~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~ 156 (906)
T PRK14720 91 -----------DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKL 156 (906)
T ss_pred -----------hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHH
Confidence 22233334444444445555432 24457777888888888888888888888887743 67778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------CC
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG-------------------MK 434 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------~~ 434 (761)
...|+.. ++++|.+++.+.... +...+++.++.+++.++.... ..
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc
Confidence 8888888 888888877766554 444445555555555555532 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 435 pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
--+.++-.|-..|-+..+++++..++..+++--+.|.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 122333333444444555555555555555433344444444444444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0023 Score=61.45 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=122.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
..+-..|...|+-+.+..+....... .+-|....+..+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44556667777777777777665433 22344555667888888888888888888887754 67888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
|++++|..-|.+..+-..-+...+|.|.-.|.-.|+++.|..++......+ .-|...-..+.......|++.+|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888888888887556667788888888888899999999998888765 336777777777888889999888876
Q ss_pred HHHH
Q 004324 531 DLMC 534 (761)
Q Consensus 531 ~~m~ 534 (761)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0022 Score=72.97 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 443 (761)
.++..+-.|.......|+.++|..+++...+. .|| ......+..++.+.+++++|+...++..... .-+....+.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35677777777777788888888888877764 344 3456667777778888888888887777753 2234555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~ 523 (761)
..++.+.|++++|..+|+++....+-+..++..+...+-..|+.++|...|++..+. ..|...-|+.++. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHHH------HH
Confidence 666777788888888888877633444777777777788888888888888877765 3455666655543 23
Q ss_pred HHHHHHHHHHH
Q 004324 524 VKAEKIYDLMC 534 (761)
Q Consensus 524 ~~A~~~~~~m~ 534 (761)
..-..+++++.
T Consensus 233 ~~~~~~~~~~~ 243 (694)
T PRK15179 233 NADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHcC
Confidence 33445555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.6e-05 Score=51.75 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (761)
.|||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998887
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00097 Score=60.33 Aligned_cols=90 Identities=12% Similarity=-0.089 Sum_probs=38.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+..+.+...+..+..++.+.|+++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 333444444444444444444322 1233344444444444444444444444444333334444444444444444444
Q ss_pred HHHHHHHHhhh
Q 004324 489 KAEEIFNHMHS 499 (761)
Q Consensus 489 ~A~~l~~~m~~ 499 (761)
+|...|+....
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.023 Score=64.21 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
...|...+...++-+..+..+||.|.-. ...|++.-|...|-+-.... +-+..+|..+--.|.++.+++-|...|..
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEEecccHHHhhHHHHh
Confidence 4567777777777667888889888666 66678888888777766653 45778999888889999999999999999
Q ss_pred HHHcCCccChHHHH-HHHHHH---hhhh---h--hhc--ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHH-----
Q 004324 533 MCLKKYEIESAWME-KLDYVL---SLNR---K--EVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMI----- 596 (761)
Q Consensus 533 m~~~g~~~~~~~~~-~~~~~~---~l~~---~--~~~--~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----- 596 (761)
.+. ++|.-.. -+++++ ..|+ + .+. ..+.+.-..-++...|-.-.---...|+.++-....
T Consensus 876 ~qS----LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 876 VQS----LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred hhh----cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 884 4554322 122221 2222 1 111 112222222222333322222223344444333222
Q ss_pred -----H--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 597 -----R--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 597 -----~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+ ++-.|+...+|.+.+.+....+.+.+|.+
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~e 988 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALE 988 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHH
Confidence 2 66678888899999999999988888876
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0036 Score=60.06 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=116.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (761)
+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.++.|++-.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444444333333333333456777777777777766521 23333333444566677778888888887743
Q ss_pred CCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 004324 434 KPLMPSYINLTNMYLNL----GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (761)
Q Consensus 434 ~pd~~t~~~li~~~~~~----g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t 509 (761)
+..|.+-|..++.+. +.+.+|.-+|++|-++..|+..+.|-+..++...|++++|..++++...+. .-+..|
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHH
Confidence 456666666665543 467788888888887788888888888888888888888888888888774 345666
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHHcCCccChHHHHHHHH
Q 004324 510 CNIILSAYLSSGDFVK-AEKIYDLMCLKKYEIESAWMEKLDY 550 (761)
Q Consensus 510 ~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~~~~ 550 (761)
...+|-.-...|...+ ..+.+.+++. ..|+...+.++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~~vk~~~e 283 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL--SHPEHPFVKHLNE 283 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcchHHHHHHH
Confidence 6666666666666544 4456666653 3355554454443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0075 Score=68.77 Aligned_cols=183 Identities=8% Similarity=0.038 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
..+...+-.|.....+.|++++|+.+++...+..+. +......+...+.+.+++++|+...++..... +-+....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 446888889999999999999999999999998754 56777889999999999999999999998863 2245567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
-.++.+.|++++|..+|++....+ .-+..++..+..++-+.|+.++|...|+...+...+....|+.++. ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 889999999999999999999843 3347899999999999999999999999999866777777777653 344
Q ss_pred HHHHHHHHhhhCCC---CCCCHHHHHHHHHHHHhC
Q 004324 489 KAEEIFNHMHSDQT---IGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 489 ~A~~l~~~m~~~g~---~~p~~~t~~~li~~~~~~ 520 (761)
.-..+++...-.+. .....++...+|.-|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 45566666654430 233455666677666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0023 Score=69.58 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=161.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
++|--..--.+...+.+.|-...|..+|++. ..|--+|.+|+ ..|+..+|..+..+-.+. .||..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~---~lg~~~kaeei~~q~lek---~~d~~ 458 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYL---LLGQHGKAEEINRQELEK---DPDPR 458 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHH---HhcccchHHHHHHHHhcC---CCcch
Confidence 4555555667788899999999999999887 35778889999 689999999998888763 58888
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.|..+.+..-.. --+++|.++++....+.- +. ......+.++++++.+.|+.-.+.. ..-..+|
T Consensus 459 lyc~LGDv~~d~------s~yEkawElsn~~sarA~------r~---~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~w 522 (777)
T KOG1128|consen 459 LYCLLGDVLHDP------SLYEKAWELSNYISARAQ------RS---LALLILSNKDFSEADKHLERSLEIN-PLQLGTW 522 (777)
T ss_pred hHHHhhhhccCh------HHHHHHHHHhhhhhHHHH------Hh---hccccccchhHHHHHHHHHHHhhcC-ccchhHH
Confidence 888887776543 278888888887643310 00 0011233677888888887654432 1235677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
-..-.+..+.+++..|.+.|..-....+. +...||.+-.+|.+.|+-.+|...+.+..+... -+...|-.-+....+.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDV 600 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhc
Confidence 77777777888888888888877766543 567888888888888888888888888877653 2444555556666788
Q ss_pred CCHHHHHHHHHHHHH
Q 004324 416 EETELTESLMKEFVE 430 (761)
Q Consensus 416 g~~~~A~~l~~~m~~ 430 (761)
|.+++|.+.+.++..
T Consensus 601 ge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLD 615 (777)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888888888775
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0057 Score=70.44 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..|+..|...+++++|.++.+...+..+. ....|-.+...|.+.++.++|..+ .+ +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 4566788999999999999999999977776543 233333333377777776666655 22 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
......++.....+...|.+.+ -+..++..|..+|-+.|+.++|..+++++++--+-|..+.|.+...|+.. ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2233333333333444444422 24457888999999999999999999999985578899999999999999 99999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchh
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSE 570 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 570 (761)
++++.+.... |....++.++.++|.++.+. +|+-++.+....... .. .... .
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~----~~~d~d~f~~i~~ki---~~---~~~~--~ 220 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHY----NSDDFDFFLRIERKV---LG---HREF--T 220 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhc----CcccchHHHHHHHHH---Hh---hhcc--c
Confidence 9998887764 66777899999999999863 333222222211111 10 0000 0
Q ss_pred hHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccC
Q 004324 571 QRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (761)
Q Consensus 571 ~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~ 623 (761)
.-+.++--|-.-|....+++.+..+++ ++++|.+..+..-++..|. +++.+
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 114555556667778889999999999 8999998877777777776 44444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.06 Score=61.00 Aligned_cols=183 Identities=8% Similarity=-0.024 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhh
Q 004324 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYY 275 (761)
Q Consensus 196 ~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~ 275 (761)
...|...|=+-.+.... =...|..|-.-|+ ...+...|.+.|+...+.+ ..|..........+++.. .
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYr---d~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~------~ 541 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYR---DSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEES------T 541 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccc------c
Confidence 45555555444443211 1345777777776 4557777888888877642 234455666667777764 7
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004324 276 LQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355 (761)
Q Consensus 276 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 355 (761)
++.|..+.-..-+.. ..-....+|.-+.-.+-..++...|..-|+...+...+ |...|..+..+|.+.|++..|.++|
T Consensus 542 we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred HHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhh
Confidence 888888732222211 11234455555555667777888888888777664322 5667888888999999999999998
Q ss_pred HHHHhCCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHH
Q 004324 356 LRLLESDNGIPTPAFVY--KMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
.+.....+. ..|.. ...+-|..|++.+|+..+.....
T Consensus 620 ~kAs~LrP~---s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 620 TKASLLRPL---SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHhcCcH---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 887776532 23332 34456777888888888877653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.7e-05 Score=49.36 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
||++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0053 Score=59.02 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=117.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
...-..+-..|+-+....+......... -|....+..+....+.|++.+|...|++.... -++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 4455566667777777766665443332 24555666788888888888888888888764 466888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (761)
|+.++|..-|.+..+-- .-+...+|.|.-.|.-.|+.+.|..++......-..|..+-..|.-.....|++++|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888888888732 12345677777778888888888888888776555577777888888888888888888766
Q ss_pred Hhhh
Q 004324 496 HMHS 499 (761)
Q Consensus 496 ~m~~ 499 (761)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 5443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.001 Score=69.98 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
+|+..+...++++.|..+|+++.+.. |+. ...|+..|...++-.+|.+++.+.++..+.+......-...|.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34444455566666666666666653 442 23355556566666667777666665555566666767777888888
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 487 ~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
++.|+++.+++.... +-+..+|..|..+|.+.|++++|+-.++.+.
T Consensus 250 ~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888853 3344588888888888888888888888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.067 Score=53.32 Aligned_cols=315 Identities=11% Similarity=0.052 Sum_probs=167.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~ 235 (761)
..|.+..|+.-|...++.. +.+-.++-.-...|...|+-..|+.=|+...+. +||-..- .+-++.+.. +.|.++
T Consensus 50 a~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A-RiQRg~vll-K~Gele 123 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA-RIQRGVVLL-KQGELE 123 (504)
T ss_pred HhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH-HHHhchhhh-hcccHH
Confidence 4566667776666666543 334444444455666777777777777777764 5664322 122222111 677888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (761)
+|..=|+...+. .|+.-+ ...+..+.. ..++-..+.. .+..+...|+...
T Consensus 124 ~A~~DF~~vl~~---~~s~~~---~~eaqskl~------~~~e~~~l~~------------------ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 124 QAEADFDQVLQH---EPSNGL---VLEAQSKLA------LIQEHWVLVQ------------------QLKSASGSGDCQN 173 (504)
T ss_pred HHHHHHHHHHhc---CCCcch---hHHHHHHHH------hHHHHHHHHH------------------HHHHHhcCCchhh
Confidence 888888777764 354322 122222110 1111111111 1234455677777
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 316 ISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 316 a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
|+.....+.+- .| |...|..-..+|...|.+..|..=++...+..-. ++.+.--+-..+.+.|+.+.++...++..
T Consensus 174 ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 174 AIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777776653 33 4555666667777788887777766665554432 44555556667777788877777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C---CCC
Q 004324 395 ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-C---RPN 470 (761)
Q Consensus 395 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~---~p~ 470 (761)
+. .||-...-.. | ..+.+..+.++.|.+ ....+++.++.+..+...+. - ...
T Consensus 251 Kl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 53 3554321111 1 111222222222222 12233444444444444431 1 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+..+-.+|...|++.+|++...+..+.. +-|+.++.--..+|.-...++.|+.=|+...+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2233344455566667777777777666642 22356666666677777777777777777664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.026 Score=59.16 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=107.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGM 452 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~ 452 (761)
--.+...|..++|+..++.+... .+-|..-+......+.+.++..+|.+.++.+... .|+ ......+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 33455678888888888887765 3335555566677888888888888888888874 455 5566677888888888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
+.+|.++++......+-|...|..|..+|...|+..+|..-.-+ +|...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHH
Confidence 88888888888877788888888888888888888777655433 35667888888888888
Q ss_pred HHHcC
Q 004324 533 MCLKK 537 (761)
Q Consensus 533 m~~~g 537 (761)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 87643
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.9e-05 Score=48.56 Aligned_cols=29 Identities=38% Similarity=0.724 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (761)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0034 Score=65.47 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=119.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 004324 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETE 419 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 419 (761)
.+...|.+++|+..++.+...-+. |...+....+.+.+.++.++|.+.++.+... .|+ ...+-.+-.+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 345789999999999998887543 6666777889999999999999999999875 455 555667788999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+|..+++...... +-|...|..|..+|...|+..++..... .+|...|++++|...+....+
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHH
Confidence 9999999888764 5678899999999999998888776544 456778999999999988887
Q ss_pred CCCCCCCHHHH
Q 004324 500 DQTIGVNTRSC 510 (761)
Q Consensus 500 ~g~~~p~~~t~ 510 (761)
. ++++..+|
T Consensus 454 ~--~~~~~~~~ 462 (484)
T COG4783 454 Q--VKLGFPDW 462 (484)
T ss_pred h--ccCCcHHH
Confidence 7 35565555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=59.36 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
......+...+...|++++|.+.|+.+....+.+...|..+...|.+.|++++|..+|++....+ +.+..+|..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 34455666677777888888888877766455677778888888888888888888888777654 4456777777778
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|...|++++|...|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887775
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.014 Score=56.18 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=83.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 004324 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG 398 (761)
Q Consensus 319 l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 398 (761)
+.+.+......-+......-...|++.|++++|.+.... +- +..+...=+..+.|..+.+-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 333443333333333333334445566666666655543 11 2222222244455555666666666666553
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHH
Q 004324 399 SASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY 474 (761)
Q Consensus 399 ~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~ 474 (761)
-+..|.+-|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++..+.....+..+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 234444444444433 23455666666665543 355556666666666666666666666666655444455555
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHhhh
Q 004324 475 GIYLESLKNAGNI-EKAEEIFNHMHS 499 (761)
Q Consensus 475 ~~li~~~~~~g~~-~~A~~l~~~m~~ 499 (761)
..+|..-...|.. +--.+.+.+.+.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 5554444444433 223334444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0023 Score=57.27 Aligned_cols=95 Identities=12% Similarity=-0.032 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
...+...+...|+.++|.+.++.+...+ ..+...+..+...|.+.|++++|..+++...+..+.+..++..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344445555555555555555555533 224455555555555666666666666655544445556666666666666
Q ss_pred CCHHHHHHHHHHhhhC
Q 004324 485 GNIEKAEEIFNHMHSD 500 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (761)
|++++|.+.|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.12 Score=54.76 Aligned_cols=371 Identities=12% Similarity=0.053 Sum_probs=205.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHc
Q 004324 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVS 266 (761)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~~~~~ 266 (761)
++.+..|+++.|...|-+-+..... |.+-|..=..+|+ ..|++++|++==.+-++ +.|+=. -|+-.=.++..
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a---~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYA---SLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFG 82 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHH---HHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHh
Confidence 4566889999999999999887654 8889999999999 69999999987777765 456522 23333333322
Q ss_pred CCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHH----HHHHcCCC-----CCHHHHHH
Q 004324 267 KPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKK----EMQQAGFE-----EGKEVLLS 337 (761)
Q Consensus 267 ~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~----~m~~~g~~-----p~~~~~~~ 337 (761)
. |++++|..-|.+=++.... +...++.+..++.- . .++.+.|. .+...+.. .....|..
T Consensus 83 l------g~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~-~----~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 83 L------GDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE-D----YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred c------ccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH-H----HHhhhhccCcHHHHHhhcChhhhhhhccHHHHH
Confidence 2 5999999999987776642 45666666644310 0 01111111 00000000 00111222
Q ss_pred HHHHHH----------hcCChHHHHHHHHH-----HHhCC-------CCC---------C-------------HHHHHHH
Q 004324 338 VLRVCA----------KEGDVEDAEKTWLR-----LLESD-------NGI---------P-------------TPAFVYK 373 (761)
Q Consensus 338 ll~~~~----------~~g~~~~a~~~~~~-----m~~~g-------~~~---------~-------------~~~~~~l 373 (761)
++..+- .-.++..|.-++.. +...+ ..| . ..-...+
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 222211 11111111111100 00001 011 0 0123456
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP--L----MPSYINLTNMY 447 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~t~~~li~~~ 447 (761)
.++.-+..+++.|.+-+....+.. -++.-++..-.+|...|...+....-....+.|-.- + ...+.-+..+|
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 777888889999999998887763 234445666678888888888777777766655321 1 11222344467
Q ss_pred HhcCCHHHHHHHHHHHHh-CCCCCHHHHHH-------------------------HHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 448 LNLGMHDRLHLAFSECLE-KCRPNRTIYGI-------------------------YLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~-------------------------li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
.+.++.+.+...|.+.+. .-.|+..+-.. =...+.+.|++..|...+.+++.+.
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 778889999999988765 33333322110 1223445566666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhh
Q 004324 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLG 581 (761)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~ 581 (761)
+-|...|.....+|.+.|.+.+|++=.+.-++ .+|.. .-.|.-=..
T Consensus 389 --P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie----L~p~~----------------------------~kgy~RKg~ 434 (539)
T KOG0548|consen 389 --PEDARLYSNRAACYLKLGEYPEALKDAKKCIE----LDPNF----------------------------IKAYLRKGA 434 (539)
T ss_pred --CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCchH----------------------------HHHHHHHHH
Confidence 44555666666666666666666555444443 23332 222222222
Q ss_pred hhhhhhhhhHHHHHHH--hhccccchhhHHHHHH
Q 004324 582 GLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (761)
Q Consensus 582 ~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~ 613 (761)
++....+++.|.+.+. ++++|++......+..
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3344456777777776 6777776654333333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0029 Score=66.68 Aligned_cols=124 Identities=11% Similarity=0.048 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
.+|+..+...++++.|.++|+++.+.. |++. ..|+..+...++-.+|.+++.+..+.. +-+......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 345555666788888888888888763 5543 346777777788888888888888642 33566666667778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++.+.|.++.+++.+-.+-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8899999999888875566677999999999999999999999988874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.14 Score=54.29 Aligned_cols=421 Identities=13% Similarity=0.106 Sum_probs=231.9
Q ss_pred hhhhhccchhHHHHHHHHHHh-----hcCCccchhhHHHHHHhhhcccCCcchhhhhH---HHhccCChhHHHHHHHHHH
Q 004324 100 EVIELEELPEQWRRAKLAWLC-----KELPSHKGGTLVRILNAQKKWLRQEDGTYLAV---HCMRIRENETGFRVYEWMM 171 (761)
Q Consensus 100 ~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~---~~~~~~~~~~a~~~~~~m~ 171 (761)
..+..++-|. ++-+|.. ...+.+++..+.+.+. ++-|..-.+... .-.+.++++....+|.+..
T Consensus 9 ~~~rie~nP~----di~sw~~lire~qt~~~~~~R~~YEq~~----~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 9 PRERIEENPY----DIDSWSQLIREAQTQPIDKVRETYEQLV----NVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHHHHhcCCc----cHHHHHHHHHHHccCCHHHHHHHHHHHh----ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566677773 4455542 2335666666666544 355665555444 4557788888888888887
Q ss_pred HcCCCCCCHHHHHHHHHHHHh-cCChhHHH----HHHHH-HHHCCCCCC-HHHHHHHHHHHhcC------CCCCCHHHHH
Q 004324 172 QQHWYRFDFALATKLADYMGK-ERKFAKCR----DIFDD-IINQGRVPS-EMTFHILIVAYLSA------PVQGCLDEAC 238 (761)
Q Consensus 172 ~~~~~~~~~~~~~~li~~~~~-~g~~~~A~----~~f~~-m~~~g~~pd-~~~~~~li~~~~~~------~~~g~~~~A~ 238 (761)
..- + +...|..-|+.--+ .|+...++ +-|+- |.+.|+.+- -..|+.-|.-+-.. ..+.+++...
T Consensus 81 vkv-L--nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vR 157 (656)
T KOG1914|consen 81 VKV-L--NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVR 157 (656)
T ss_pred HHH-h--hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHH
Confidence 763 3 56677777765443 33333332 23333 334454332 23366555443211 0334566677
Q ss_pred HHHHHHHhcCCCCC------CHHHHHHHHHHH-HcCCCCCchhhHHHHHHHHHHHH--HcCCCcCHH------HHH----
Q 004324 239 SIYNRMIQLGGYQP------RPSLHNSLFRAL-VSKPGGLSKYYLQQAEFIFHNLL--TSGLEIQKD------IYS---- 299 (761)
Q Consensus 239 ~l~~~m~~~~g~~p------~~~t~~~ll~~~-~~~~g~~~~g~~~~A~~~~~~m~--~~~~~p~~~------~~~---- 299 (761)
++|+++... .+.- |-..|-.-|+-. +++--+...-.+..|.++++++. ..|+.-... |-.
T Consensus 158 riYqral~t-Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q 236 (656)
T KOG1914|consen 158 RIYQRALVT-PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ 236 (656)
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH
Confidence 777777643 1100 011111111111 00000000026677778877763 334321111 100
Q ss_pred ---HHHHHHhhcc------CCCH--HHHHHHHHH-HHHcCCCCCHHHH-H----HHHHHHHhcCCh-------HHHHHHH
Q 004324 300 ---GLIWLHSYQD------NIDK--ERISLLKKE-MQQAGFEEGKEVL-L----SVLRVCAKEGDV-------EDAEKTW 355 (761)
Q Consensus 300 ---~li~~~~~~~------~g~~--~~a~~l~~~-m~~~g~~p~~~~~-~----~ll~~~~~~g~~-------~~a~~~~ 355 (761)
|.-++..-.. .|.. .+..-.+++ |.-.+..|+..-. . ..-+.+...|+. +++..++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 1000011000 0000 112222222 2233444443221 1 111233344444 3444455
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 356 LRLLESDNGIPTPAFVYKMEAYA---KIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
+.....-..-+..+|..+.+-=- +-.+.+...+.++++...- +.| ..+|-..++.--+..-+..|..+|.+..+.
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED 395 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 44443322223333333322111 1112445555666655432 233 346777788888888899999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--H
Q 004324 432 GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--R 508 (761)
Q Consensus 432 g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~--~ 508 (761)
+..+ .++.+++++.-||. ++.+-|.++|+.-++....+..--+..++-+...++-..|..+|++....+ +.|+. .
T Consensus 396 ~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~-l~~~ks~~ 473 (656)
T KOG1914|consen 396 KRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV-LSADKSKE 473 (656)
T ss_pred cCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc-CChhhhHH
Confidence 8777 88889999988874 577889999998777666666666788888999999999999999999885 66664 6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|..+|.-=+.-|+...+.++-+++..
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999999888874
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.001 Score=55.04 Aligned_cols=81 Identities=10% Similarity=0.201 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCCCC-------CHHHHHHHHHHHHhcCCCCCCH
Q 004324 183 ATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHILIVAYLSAPVQG-------CLDEACSIYNRMIQLGGYQPRP 254 (761)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~~~~~li~~~~~~~~~g-------~~~~A~~l~~~m~~~~g~~p~~ 254 (761)
....|.-+...+++...-.+|+.+++.|+ .|++.+||.++.+.+. |.= +.-+.+.+|+.|... +++|+.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~--R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~ 104 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK--RELDSEDIENKLTNLLTVYQDILSN-KLKPND 104 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH--ccccchhHHHHHHHHHHHHHHHHHh-ccCCcH
Confidence 34456666677999999999999999999 8999999999999884 222 345678899999987 799999
Q ss_pred HHHHHHHHHHHc
Q 004324 255 SLHNSLFRALVS 266 (761)
Q Consensus 255 ~t~~~ll~~~~~ 266 (761)
.||+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=69.59 Aligned_cols=124 Identities=7% Similarity=-0.010 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 004324 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD--NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (761)
Q Consensus 327 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (761)
+...+......+++.+....+++++..++-...... ...-..|..++|..|.+.|..++|+++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344466777777777777777888887777766551 111223445788888888888888888888788888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777777777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0014 Score=54.34 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIG--------EFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..|..|...+++...-.+|+.+++.|+ .|++.+|+.++.+-++.. ++-+.+.++..|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344444445666666666666666666 566666666665555432 23345555566666666666666666
Q ss_pred HHHHHHh
Q 004324 408 IIELLCK 414 (761)
Q Consensus 408 li~~~~~ 414 (761)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6655443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=69.21 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=81.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHH
Q 004324 397 LGSASVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTI 473 (761)
Q Consensus 397 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~ 473 (761)
+.+.+.+....+++.+....+++++..++.+.+.. ....-..|..++|+.|.+.|..+.+..++..=.. |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445566666676666666777777777766653 2222234455777777777777777777776655 77777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
+|.||+.+.+.|++..|.++.-+|..++ ...+..|+.--+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666 445566666666655554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.052 Score=51.98 Aligned_cols=186 Identities=13% Similarity=0.076 Sum_probs=102.6
Q ss_pred hcCChHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCC
Q 004324 344 KEGDVEDAEKTWLRLLES---D-NGIPTP-AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI-IELLCKAEE 417 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~---g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~ 417 (761)
...+.++..+++.++... | ..++.. .|.-++-+...+|+.+-|...++++..+- |...-...| .--+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 345566666666665542 2 333332 23344555566677777777777766552 222111111 111234566
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
+++|.++++.+.+.. +.|.+++--=+.+.-..|+.-+|++-+....+.+..|...|.-|-..|...|++++|.-.+++|
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 777777777777655 4455555554555555566666666666666666677777777777777777777777777776
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Q 004324 498 HSDQTIGVNTRSCNIILSAYLSSG---DFVKAEKIYDLMC 534 (761)
Q Consensus 498 ~~~g~~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~ 534 (761)
.-.. |-+...|..+...+.-.| +.+-|.++|.+.+
T Consensus 181 ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6643 223444444444433333 2344555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.007 Score=54.87 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHH
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK--EVLLSVLRVCAKEGDVEDAE 352 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~ 352 (761)
+...+...++.+.+......-.....+.....+...|++++|...|+........|+. .....+...+...|++++|.
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544332223334444445555555555555555555554322211 12223444455555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 353 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
..++....... ....+....+.|.+.|+.++|...|+
T Consensus 106 ~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 106 ATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55544322221 22334444555555555555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.13 Score=49.34 Aligned_cols=191 Identities=15% Similarity=0.179 Sum_probs=133.9
Q ss_pred ccCCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 308 QDNIDKERISLLKKEMQQ---AG-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
+...+.++..+++.+|.. .| ..++..+ |--++-+....|+.+.|...++.+...-+. +..+--.-.--+--.|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 445567888888887754 34 6666654 456667777888899999988888776422 11111111222344688
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+++|.++++.+.+.. +-|.++|---+...-..|+.-+|++-+....+. +..|...|.-|...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 899999999888765 446677766666666677777777777777664 466888999999999999999999988888
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCC
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g 501 (761)
++=.-+-+...+..+.+.+--.| +++-|.++|.+..+..
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 87544556666666666655444 5677888888887753
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0025 Score=64.86 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|.....+ |...++.+.|.++|+...+.+..+...|...|+.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 457777777777777888888888887543 2223334433334 22345666788888888887778888899999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 482 KNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~g~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+.|+.+.|..+|++.... +.++. ..|...|.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998876 43333 4888889888899999999999998886
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0027 Score=51.96 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
..+...+...|++++|...+....+..+.+...+..+...|...|++++|.+.|+...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 3444555556666666666666554333444556666666666666666666666665543 23344566666666666
Q ss_pred CCHHHHHHHHHHHH
Q 004324 521 GDFVKAEKIYDLMC 534 (761)
Q Consensus 521 g~~~~A~~~~~~m~ 534 (761)
|++++|...+.+..
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666666655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.43 Score=53.94 Aligned_cols=384 Identities=13% Similarity=0.101 Sum_probs=228.0
Q ss_pred Ccchhhhh---HHHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 004324 144 QEDGTYLA---VHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220 (761)
Q Consensus 144 p~~~t~~~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~ 220 (761)
|+.-...+ +...|.|+.++|..+++.....+ ..|..+...+-.+|-..++.++|..++++.... .|+..-...
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHH
Confidence 44443333 36779999999999999888776 448999999999999999999999999999876 577777778
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCch----hhHHHHHHHHHHHHHcCCCcCHH
Q 004324 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSK----YYLQQAEFIFHNLLTSGLEIQKD 296 (761)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~----g~~~~A~~~~~~m~~~~~~p~~~ 296 (761)
+..+|+ |.+.+.+-.+.=-+|-+ .+.-+.+.|-++++........... --+.-|.+.++.+.+.+- +-..
T Consensus 116 lFmayv---R~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s 189 (932)
T KOG2053|consen 116 LFMAYV---REKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIES 189 (932)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccch
Confidence 888888 67777665444444444 2445678888888876654321111 134567788888876651 2122
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKK-EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 375 (761)
.--..+........|++++|++++. .....-...+...-+--+..+...+++.+..++-.++...|.. | |...++
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~ 265 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHH
Confidence 2223333355667788999999984 4443333445555567778888999999999999999888853 2 444333
Q ss_pred HHHH----------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCC-
Q 004324 376 AYAK----------------IGEFMKSLEIFREMQERLGSASVPAYHKIIELL---CKAEETELTESLMKEFVETGMKP- 435 (761)
Q Consensus 376 ~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p- 435 (761)
.+++ .+..+...+...+-.....+ -.|-+=+.++ -.-|+.+++...|-+ +-|-.|
T Consensus 266 sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R---gp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kpc 340 (932)
T KOG2053|consen 266 SVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR---GPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKPC 340 (932)
T ss_pred HHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc---CcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCcH
Confidence 3332 22222222222222221111 1122222222 233555554333211 111111
Q ss_pred -----------------------------CHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH----hC----
Q 004324 436 -----------------------------LMP-------SYINLTNMYLNLGM-----HDRLHLAFSECL----EK---- 466 (761)
Q Consensus 436 -----------------------------d~~-------t~~~li~~~~~~g~-----~~~a~~~~~~m~----~~---- 466 (761)
+.. -+.+.+..-.-.|. -+.-..++.++. .|
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~ 420 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLS 420 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccc
Confidence 110 01111111112221 122222332222 12
Q ss_pred --CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 467 --CRPNRT---------IYGIYLESLKNAGNIE---KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 467 --~~p~~~---------~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
+-|... +-|.||+.+-+.++.. +|+-+++.-.... +-|..+=-.+|..|+-.|-...|.++|+-
T Consensus 421 K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~t 498 (932)
T KOG2053|consen 421 KDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKT 498 (932)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHh
Confidence 222222 4468889999888755 5666666666653 44666777888999999999999999998
Q ss_pred HHHcCCccChHHHHHHHH
Q 004324 533 MCLKKYEIESAWMEKLDY 550 (761)
Q Consensus 533 m~~~g~~~~~~~~~~~~~ 550 (761)
|--+. +..+|+.|+..
T Consensus 499 LdIK~--IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 499 LDIKN--IQTDTLGHLIF 514 (932)
T ss_pred cchHH--hhhccchHHHH
Confidence 86554 45556665544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.011 Score=53.58 Aligned_cols=113 Identities=15% Similarity=0.231 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCCH
Q 004324 415 AEETELTESLMKEFVETGMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIYGIYLESLKNAGNI 487 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~~~li~~~~~~g~~ 487 (761)
.++...+...++.+.+.. ..+ ....-.+...+...|++++|...|+.+.... |+. ...-.|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555532 111 1222334445555666666666666655422 221 2333445566666667
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
++|+..++...... .....+......|.+.|++++|...|++
T Consensus 102 d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666665543332 2334555556666667777777666654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.22 Score=49.85 Aligned_cols=291 Identities=14% Similarity=0.131 Sum_probs=173.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIV---AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~---~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
++.-.--|-..+...|.+.+|+.-|....+- |+..|-++.+ .|. -.|+..-|+.=|....+ .+||-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yL---AmGksk~al~Dl~rVle---lKpDF~ 106 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYL---AMGKSKAALQDLSRVLE---LKPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHh---hhcCCccchhhHHHHHh---cCccHH
Confidence 3333444555666778888888888888775 5555555443 344 36777888888888876 568743
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.-..-=.... +..|.+++|..=|+.++.....- |...+|.+-+.... .....
T Consensus 107 ~ARiQRg~vl-----lK~Gele~A~~DF~~vl~~~~s~-----------------~~~~eaqskl~~~~------e~~~l 158 (504)
T KOG0624|consen 107 AARIQRGVVL-----LKQGELEQAEADFDQVLQHEPSN-----------------GLVLEAQSKLALIQ------EHWVL 158 (504)
T ss_pred HHHHHhchhh-----hhcccHHHHHHHHHHHHhcCCCc-----------------chhHHHHHHHHhHH------HHHHH
Confidence 3221111111 11268888888888877655321 11111111111000 11223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
...+..+...|+...|......+.+..+ -|...|..-..+|...|.+..|+.=++...+.. .-+..++--+-.-+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 3445556677888888888888777643 366667777788888888888877666554432 22455555666667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (761)
|+.+.++...++.++ +.||....-.. | ..+.+..+.++.|. .....+++.++++-.+
T Consensus 237 gd~~~sL~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~e---------------~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 237 GDAENSLKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESAE---------------QAIEEKHWTECLEAGE 293 (504)
T ss_pred hhHHHHHHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHHH---------------HHHhhhhHHHHHHHHH
Confidence 888877777777666 45664332211 1 11222222333332 2334577888888887
Q ss_pred HhhhCCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 496 HMHSDQTIGVN-----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 496 ~m~~~g~~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+.. |. ...+..+-.+|...|++.+|++.-.+.++
T Consensus 294 ~vlk~e---p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 294 KVLKNE---PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHhcC---CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 777654 43 23445566778889999999999999984
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0031 Score=59.07 Aligned_cols=88 Identities=9% Similarity=0.139 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------ChHHHH
Q 004324 329 EEGKEVLLSVLRVCAK-----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG----------------EFMKSL 387 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~ 387 (761)
..|..+|..+|..|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=|.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467777777777764 4667777777778888888888888888887776522 123344
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 388 EIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
+++++|...|+.||..|+..|++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 44444444444444444444444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0046 Score=50.53 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
.+...+...|++++|...++...+.. ..+...+..+...|...+++++|.+.|....+..+.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444444555555555555554432 11224444455555555555555555555554333444555666666666666
Q ss_pred HHHHHHHHHHhhh
Q 004324 487 IEKAEEIFNHMHS 499 (761)
Q Consensus 487 ~~~A~~l~~~m~~ 499 (761)
+++|...+.....
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666665544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0042 Score=58.17 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 004324 365 IPTPAFVYKMEAYAKI-----GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE----------------ETELTES 423 (761)
Q Consensus 365 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~A~~ 423 (761)
.+-.+|..+|+.|.+. |.++=....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3678888888888865 677888888889999999999999999998775421 2233444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 424 LMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 424 l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
++++|...|+-||..|+..|++.+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 5555555555555555555544444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0084 Score=52.00 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~p~~~t~~~li 514 (761)
++..+...+.+.|++++|...|..+.+..+. ....+..+...+.+.|++++|.+.|+.......- +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455555666666667777666666542221 1345556677777777777777777777654200 01134566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 004324 515 SAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.027 Score=48.78 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=6.4
Q ss_pred HHHcCChHHHHHHHHHH
Q 004324 377 YAKIGEFMKSLEIFREM 393 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m 393 (761)
+.+.|++++|.+.|..+
T Consensus 12 ~~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAF 28 (119)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.04 Score=51.63 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
..+..+...|...|++++|...|++.......+. ...|..+...+.+.|++++|...+.+..+.. .-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555566666666666666666554322111 2345555555566666666666665555532 112334444444
Q ss_pred HHHhcCCHHH
Q 004324 446 MYLNLGMHDR 455 (761)
Q Consensus 446 ~~~~~g~~~~ 455 (761)
.|...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 4544444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.024 Score=57.65 Aligned_cols=130 Identities=8% Similarity=0.160 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 447 (761)
+|..++...-+.+..+.|..+|.+..+.+ +..++....+++.- ...++.+.|..+|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666665432 12223222333322 2234555566666666654 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.+.++.+.|+.+|+.....+.++. ..|...|+-=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677777777777777765433332 57888888888888888888888888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.012 Score=57.76 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=56.9
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhc
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVK 560 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~ 560 (761)
+.+.+++++|+..|.+.++- .+-|.+-|..-..+|++.|.++.|++-.+..+. ++|..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~y---------------- 148 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHY---------------- 148 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHH----------------
Confidence 34456666666666666654 234555555556666666666666665555442 55543
Q ss_pred ccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHH
Q 004324 561 KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (761)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~ 613 (761)
.-+|..|--++...|++++|.+.++ ++++|++..+...|..
T Consensus 149 ------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 149 ------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred ------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 5556666666666666666666655 6666666644444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.022 Score=60.22 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
..|++++|.++|++.++.. .-+...|..+..+|.+.|++++|...++..++..+.+...|..+..+|...|++++|...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444444432 112333444444444444444444444444432233444444444444444444444444
Q ss_pred HHHhhh
Q 004324 494 FNHMHS 499 (761)
Q Consensus 494 ~~~m~~ 499 (761)
|++...
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.018 Score=60.88 Aligned_cols=90 Identities=9% Similarity=-0.032 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~ 523 (761)
...+...|++++|...|.+.++..+.+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 4456667788888888888877556677777777888888888888888888887764 34566777777788888888
Q ss_pred HHHHHHHHHHHH
Q 004324 524 VKAEKIYDLMCL 535 (761)
Q Consensus 524 ~~A~~~~~~m~~ 535 (761)
++|+..|++.++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 888888887774
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0049 Score=49.80 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
.|+++.|..+++++.+..+ ++...+-.+..+|.+.|++++|..++++ ...+ +.+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3566677777777665222 2444455577777777777777777777 2221 112233444466677777777777
Q ss_pred HHHHH
Q 004324 528 KIYDL 532 (761)
Q Consensus 528 ~~~~~ 532 (761)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.23 Score=50.74 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh---CC-CC--CHHHHHHH
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-GMHDRLHLAFSECLE---KC-RP--NRTIYGIY 477 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-g~~~~a~~~~~~m~~---~~-~p--~~~~~~~l 477 (761)
|...+..|...|++..|-+++.. +...|... |++++|.+.|.+..+ .. .+ -..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 33445556666666666555544 44456666 788888888888764 11 11 13356677
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC----CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQT----IGVNTR-SCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~----~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
...+.+.|++++|.++|++...... .+.+.. .|-..+-.+...|++..|.+.|++....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8889999999999999999876431 122232 3334455677789999999999998853
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.43 Score=47.33 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
.+..-|.+.|.+..|..-|+.+++ +.+......-.++.+|...|..++|.++.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 344556666666666666666665 333444455566667777777777766655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.11 Score=44.91 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcC
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNAG 485 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~g 485 (761)
++-..|+.++|..+|++....|+... ...+..+...|...|++++|..+|++.....+. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34445555555555555555554433 223444455555555555555555555432211 1222222233455556
Q ss_pred CHHHHHHHHHHhh
Q 004324 486 NIEKAEEIFNHMH 498 (761)
Q Consensus 486 ~~~~A~~l~~~m~ 498 (761)
+.++|++.+-...
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0049 Score=49.78 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 416 EETELTESLMKEFVETGM-KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~-~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (761)
|+++.|..+++++.+..- .|+...+..+..+|.+.|++++|..+++. .+....+....-.+..+|.+.|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444455555555444321 11222333344455555555555555544 1100112223333345555555555555555
Q ss_pred HH
Q 004324 495 NH 496 (761)
Q Consensus 495 ~~ 496 (761)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.12 Score=48.34 Aligned_cols=93 Identities=17% Similarity=0.108 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
...+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..... +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34567777778888999999999988887654332 3577788888889999999999988887652 22455666666
Q ss_pred HHHHhcCCHHHHHHHH
Q 004324 410 ELLCKAEETELTESLM 425 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~ 425 (761)
..+...|+...+..-+
T Consensus 114 ~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHcCChHhHhhCH
Confidence 7777777765554333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=45.48 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
+.|++++|.++|+.+....+-+...+-.+..+|.+.|++++|.++++++.... |+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 44556666666666655445566666666666666666666666666666643 554444433
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.065 Score=49.94 Aligned_cols=78 Identities=12% Similarity=-0.059 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
|..+...+...|++++|...|+........| ...++..+...|.+.|++++|...+....+..+....+++.+...|.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3444444444555555555555554432111 12344455555555555555555555554422333344444444444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.14 Score=46.40 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCccChHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWM 545 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 545 (761)
..+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.++|+++.. -|+.|+|.+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3466677888888999999999999999875 55788999999999999999999999988853 3777777763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.17 Score=56.09 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...+...|.++.-.+...|++++|...+++....+ |+...|..+...|...|+.++|.+.+++..+
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556778888777777899999999999998864 7888899999999999999999999998874
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.13 Score=56.99 Aligned_cols=144 Identities=9% Similarity=-0.062 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhh
Q 004324 433 MKPLMPSYINLTNMYLNLG-----MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------GNIEKAEEIFNHMHS 499 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~ 499 (761)
...|...|...+.+..... ..+.|..+|++..+.-+-+...|..+..+|... +++..+.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3445556665555543321 245666666666653344444555443333222 123445555554433
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHH
Q 004324 500 DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (761)
Q Consensus 500 ~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 579 (761)
....+.+...|.++.-.+...|++++|...+++..+.. |. ...|..+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps-----------------------------~~a~~~l 459 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MS-----------------------------WLNYVLL 459 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-----------------------------HHHHHHH
Confidence 21123456788888777778899999999999998632 22 4567777
Q ss_pred hhhhhhhhhhhHHHHHHH--hhccccchhhHH
Q 004324 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSV 609 (761)
Q Consensus 580 l~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~ 609 (761)
...+...|+.++|...++ +.++|..++.|.
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 888889999999999998 899999886443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.087 Score=49.07 Aligned_cols=63 Identities=11% Similarity=-0.014 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA--SVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
..|..+...+...|++++|...|++.......+ ...+|..+...+...|+.++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555566666666666554332111 123455555566666666666666666554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.2 Score=43.23 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=57.9
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEG--KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--PTPAFVYKMEAYAKI 380 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~ 380 (761)
..+-..|+.++|+.+|++....|+... ...+-.+-+.+...|++++|..+++......+.. +......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344456667777777777776665543 2234455566667777777777777666543220 112222233455666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
|+.++|++.+-..... +...|.--|..|+
T Consensus 89 gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 89 GRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 7777777666554432 3335555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.12 Score=46.32 Aligned_cols=94 Identities=7% Similarity=-0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
.-.+..-+...|++++|.++|+.+..--+-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+-.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHH
Confidence 33444556677788888888777765445566677777777777888888888888777654 3456777777777888
Q ss_pred CCCHHHHHHHHHHHHH
Q 004324 520 SGDFVKAEKIYDLMCL 535 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (761)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888887764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=43.33 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..+.+.|++++|.+.|++..+.. +-+...|..+...+.+.|++++|..+|++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555542 2233445555555555555555555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.12 Score=46.34 Aligned_cols=88 Identities=9% Similarity=-0.050 Sum_probs=41.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
-+...|++++|..+|+.+.... .-+..-|-.|.-+|-..|++++|...|.....--+.|...+-.+..+|...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 3344455555555555444422 112333334444444445555555555554442234444555555555555555555
Q ss_pred HHHHHHhhh
Q 004324 491 EEIFNHMHS 499 (761)
Q Consensus 491 ~~l~~~m~~ 499 (761)
.+-|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.097 Score=51.61 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=66.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~ 525 (761)
..+.+++++|...|.+.++-.+.|.+-|..-..+|++.|.++.|.+=.+..+.-+ |. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHHH
Confidence 4566778888888888777666777778888888888888888888887777743 43 4688888888888888888
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
|++.|++.++
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 8888887763
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.024 Score=43.61 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG-DFVKAEKIYDLMCL 535 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~ 535 (761)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..+|.+.| ++++|++.|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35667777777777778888888887777754 335567777777777777 67777777777664
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.9 Score=42.75 Aligned_cols=177 Identities=11% Similarity=0.001 Sum_probs=96.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c-
Q 004324 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPA--FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK--A- 415 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~- 415 (761)
.+.+.|++++|.+.|+.+....+...... .-.+..+|.+.+++++|...|++..+.--.-..+-|...+.|.+. .
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 33456666666666666665543321111 122455566666666666666666543211112223333333321 0
Q ss_pred --------------CC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 416 --------------EE---TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 416 --------------g~---~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
.+ ..+|...|+.+++. -|+ ..-..+|...+..+...+ ...--.+.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~l---a~~e~~ia 182 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDRL---AKYELSVA 182 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 11 23455566665553 233 222344444444433211 11112456
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQT-IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.-|.+.|.+..|..-|+.+.++-. .+........++.+|.+.|..++|.++...+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 778999999999999999988631 122345666888999999999999998877653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.024 Score=43.47 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=42.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li 222 (761)
..|++++|.++|+.+.... +.+..++-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4567777777777777764 556667777777777777777777777777765 35545555444
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.05 Score=41.25 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
+...+.+.|++++|.+.|+.+++..+-+...|..+...+...|++++|..+|++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999998667789999999999999999999999999998753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.2 Score=42.80 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~----~t~~~li~~~~~~g~~~~A 526 (761)
+..-|.+.|.+..|..-|+.+.++- |+. ...-.|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3455666666666666666666652 332 2345556666666665533
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.84 Score=39.28 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
+....+..++.+...|+-+.-.++.+++.+.+ .++......+..||.+.|+..+|.+++.+..++|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556677777788777777777776544 45666777777788888888888888888877764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.58 E-value=3.4 Score=42.71 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=56.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
..|.-+...|+...|.++-.+.. + ||..-|-..|.+|+..+++++-.++-.. . -.++-|-.++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCC
Confidence 33455555666666655544431 2 4566666666666666666654443221 1 12245666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (761)
+..+|..+...+ .+..-+..|.++|.+.+|.+.-
T Consensus 252 ~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 666666555441 1244556666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.32 Score=46.93 Aligned_cols=139 Identities=10% Similarity=0.038 Sum_probs=68.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HH
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT-----NM 446 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li-----~~ 446 (761)
+++..+.-.|.+.-.+.++.+..++.-+-+......|.+.-.+.|+.+.|...|+...+..-+.|..+++.++ ..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3334444444444444444444443333333334444444444455555555554444322222222222222 22
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
|.-.+++..|...|.++.+....|+..-|.-.-++.-.|+..+|.+..+.|...- |...+-+++
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~---P~~~l~es~ 325 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD---PRHYLHESV 325 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhH
Confidence 3445566777777777766445555555544444444577888888888887753 555544433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.18 Score=43.97 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~ 515 (761)
.|+..+..+++.+|+..|++..|+++.+...+.-.++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444443334444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.064 Score=41.20 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-NIEKAEEIFNHMHS 499 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 499 (761)
..+|..+...+...|++++|...|.+.++-.+.+...|..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555566666666666666666666544455666666666666666 56666666666554
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.3 Score=42.70 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=23.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A 490 (761)
+..-|.+.|.+..|..-++.+++..+-. ....-.|+.+|-+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3444555666666666666655432222 22334455566666655533
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.22 Score=43.50 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRL 358 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m 358 (761)
|..++.++|.++++.|+++....+.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 4567777788888888887777777544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.6 Score=41.96 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQE 395 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~ 395 (761)
..+...+.+.|++++|.++|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.54 Score=48.27 Aligned_cols=299 Identities=15% Similarity=-0.008 Sum_probs=167.3
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHH--hC--CCCC-CH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCAKEGDVEDAEKTWLRLL--ES--DNGI-PT 367 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~--~~--g~~~-~~ 367 (761)
.+...+-...+|+.|+......+|+...+.|-. |. .+|.-|-++|.-.+++++|.+.+..=. .+ |-+. ..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 333344456688999999999999999988754 43 346667788888899999998764311 11 1000 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH-HHH---HHcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIF-REM---QERLGS-ASVPAYHKIIELLCKAEE--------------------TELTE 422 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~-~~m---~~~g~~-p~~~t~~~li~~~~~~g~--------------------~~~A~ 422 (761)
.+...|-+.+--.|.+++|.-.- +.+ .+.|-+ .....|-.|-..|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 12222333344445555554321 111 111100 011223334444433322 23333
Q ss_pred HHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 423 SLMKEFV----ETGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KC-RPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 423 ~l~~~m~----~~g~~-pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+.|.+=. +.|-. .-...|..|...|.-.|+++.|...++.-++ |. ......+..|..++.-.|+++.|.
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 4433221 11200 0123566666677777899999887776442 22 234557888899999999999999
Q ss_pred HHHHHhh----hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 492 EIFNHMH----SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 492 ~l~~~m~----~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
+.++.-. +.|.-.....+..+|-+.|.-...+++|+.++.+=+. -+-.+....=
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa--------------IAqeL~DriG-------- 313 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA--------------IAQELEDRIG-------- 313 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhh--------
Confidence 8887642 3332234566788888888888888999988876542 1111111100
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH----hhccccc----hhhHHHHHHHHHhhhhcc
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENS----RMHSVLRRYLYDQYHEWL 622 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~l~p~~----~~~~~~l~~~~~~~g~~~ 622 (761)
....+-+|..++...|.-+.|....+ +.++-++ .+.-..|+++-...|.-+
T Consensus 314 ----e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 314 ----ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred ----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 03344457777777777777777655 2222222 234445666666666543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.43 Score=49.16 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=101.1
Q ss_pred CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 435 PLMPSYINLT-NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES--LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 435 pd~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
|...++-.|- .++.-.|+.++|..+-..+++--..+ .+..++.+ +--.++.+.|..-|++-...+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld---pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD---PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccC---hhhhhHH
Confidence 3334444332 23455677777777766666422222 23333333 334567888888888877754 5544322
Q ss_pred HH-------------HHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHH
Q 004324 512 II-------------LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578 (761)
Q Consensus 512 ~l-------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 578 (761)
++ -+-..+.|++.+|.+.|.+.+ .++|+. .++++..|..
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal----~idP~n------------------------~~~naklY~n 292 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL----NIDPSN------------------------KKTNAKLYGN 292 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh----cCCccc------------------------cchhHHHHHH
Confidence 22 223457888888888888876 355552 2345666666
Q ss_pred HhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 579 LLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 579 ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
......+.|+.++|..-.+ +.++|.-...|..-++.|.-.++|++|.+
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888887766 77777777777788888888888888875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.4 Score=46.32 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 004324 179 DFALATKLADYMGKERKFAKCRDI---------FDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG 249 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~---------f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g 249 (761)
....+.+-+-.|...|.+++|..+ ++.+-... .+.--+++.=.+|.+. |.-.+-+-+.-+++|++. |
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rV-Rdl~~L~li~EL~~~k~r-g 630 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRV-RDLRYLELISELEERKKR-G 630 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHH-hccHHHHHHHHHHHHHhc-C
Confidence 344455555667777888777553 12221110 1334456666667632 334444555556677776 6
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHH
Q 004324 250 YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHN 285 (761)
Q Consensus 250 ~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~ 285 (761)
-.|+......++ +|. |.+.+|.++|.+
T Consensus 631 e~P~~iLlA~~~-Ay~--------gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 631 ETPNDLLLADVF-AYQ--------GKFHEAAKLFKR 657 (1081)
T ss_pred CCchHHHHHHHH-Hhh--------hhHHHHHHHHHH
Confidence 778766544333 222 477777777753
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.081 Score=41.81 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+|+.+...|...|++++|+..|++..+. |.-.|+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666654421 101122 4456666666667777777777666654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.43 Score=47.79 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~p~~~t~~~li 514 (761)
.|...+..+.+.|++++|...|+.+++..+-+ ..++--+...|...|++++|...|+.+.....- +.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444445566666666666665422222 235555666677777777777777777654200 00133344445
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+...|+.++|.++|++.++
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556677777777777777764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=3.8 Score=39.86 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCHHHHHHH-----
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIY----- 477 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~l----- 477 (761)
..+.++..+.-.|.+.-...++.+.++..-+-+......|.++-.+.|+.+.|...|+...+ .-+.|-.+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567777777788888889999999876566788889999999999999999999998765 333444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
-..|.-.+++..|...|.+....+ +-|.+.-|.-.-...-.|+...|++.++.|++. -|.|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 445666789999999999988875 335555555444455578999999999999964 344443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=4.7 Score=44.53 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCH--------HHHHHHHHHHHcCCCCCchhhHHHHHHHH
Q 004324 212 VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP--------SLHNSLFRALVSKPGGLSKYYLQQAEFIF 283 (761)
Q Consensus 212 ~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--------~t~~~ll~~~~~~~g~~~~g~~~~A~~~~ 283 (761)
.|....|..+...-. +.-.++-|...|-+.....|++.-- ..-.+-|.++. |.+++|++++
T Consensus 689 nPHprLWrllAe~Al---~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~--------g~feeaek~y 757 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYAL---FKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY--------GEFEEAEKLY 757 (1189)
T ss_pred CCchHHHHHHHHHHH---HHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh--------cchhHhhhhh
Confidence 467788887776655 5667788888887775544442111 11112233333 4889999998
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004324 284 HNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLL 359 (761)
Q Consensus 284 ~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 359 (761)
-+|-.+++.. ..+.+.|++-.+.++++. -|-..| ...++.+-.-++....|++|.+.+..-.
T Consensus 758 ld~drrDLAi-----------elr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 758 LDADRRDLAI-----------ELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hccchhhhhH-----------HHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8886655421 333455666666555542 111111 3355666666666666666666654321
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 360 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
. . ...|.+|.+...+++-..+-+.+.+ |....-.|...+.+.|.-++|.+.|-+. + .|
T Consensus 824 ~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p---- 881 (1189)
T KOG2041|consen 824 D------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP---- 881 (1189)
T ss_pred c------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc----
Confidence 1 1 1234444444444443333333322 3444445556666666666665554321 1 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY--------------GIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
-..+..|...+++.+|.++-+... -|.+.|. ---|..+.++|+.-+|-+++.+|.+
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~---l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQ---LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 123444555555555555443322 1221111 1125566777777777777777754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3 Score=38.40 Aligned_cols=126 Identities=11% Similarity=0.096 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCHHHHH
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRPNRTIYG 475 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p~~~~~~ 475 (761)
|++..--.|..++.+.|+..+|...|.+...--+.-|......+.++....+++..|...++.+.+ +-.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 555555556666666666666666666665544455666666666666666677677666666654 12232 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
.+...|.-.|++.+|+.-|+.....- |+...-.-.-..+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 45566777777777777777776643 44332222233355666655554433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.17 Score=45.78 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ-----ERLGSASVPA 404 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 404 (761)
.+...++..+...|++++|.++...+....+- +...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34556667777888888888888888877653 77788888888888888888888887764 3477776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.4 Score=45.04 Aligned_cols=137 Identities=14% Similarity=0.196 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHcCCCC
Q 004324 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA---PVQGCLDEACSIYNRMIQLGGY--QPRPSLHNSLFRALVSKPGG 270 (761)
Q Consensus 196 ~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~---~~~g~~~~A~~l~~~m~~~~g~--~p~~~t~~~ll~~~~~~~g~ 270 (761)
+.+...+++.|.+.|+..+..+|-+........ ...-...+|.++|+.|++...+ .++-+++..+|..-...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~--- 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSED--- 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhccccc---
Confidence 455677888999999888887776644443310 0113467889999999986322 45677787777652221
Q ss_pred CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI---DKERISLLKKEMQQAGFEEGKEVLLS 337 (761)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~~~~~ 337 (761)
..--.+.++..|+.+.+.|+......... ..+.+++..- ...++.++++.+.+.|+++....|..
T Consensus 155 -~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~L-S~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 155 -VEELAERMEQCYQKLADAGFKKGNDLQFL-SHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcHHHHH-HHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 11244677777888877777665443321 1111111111 13466777777777777766655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.1 Score=38.30 Aligned_cols=132 Identities=13% Similarity=0.060 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHH
Q 004324 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL---GSASVPAY 405 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 405 (761)
.|++.---.|..+..+.|+..+|...|++...--+.-|....-.+..+....++...|...++.+.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 444444445556666666666666666665543333345555555555566666666666666554431 22222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
-.+...|...|...+|..-|+..... -|+...-..-...+.+.|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 23445555566666666666665552 3333333333344455555555444443333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.59 Score=46.80 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CHHHHHHH
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIY 477 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~l 477 (761)
|...+.-+.+.|++++|...|+.+++.- |+ ..++..+...|...|++++|...|..+.+..+. ....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344455555555555555432 22 134445555555666666666666665542222 23333334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
...|...|+.++|..+|++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 45555666666666666666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.51 Score=46.95 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
|...|-.|...|...|+...|..-|....+-..+|...+..+..++.... ...+|.++|+++.... +-|+.+-.-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHHHH
Confidence 34444444444444444444444444444433333444444333333221 2334445555554443 223333333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|..++...|++.+|...|+.|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44444455555555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.89 Score=47.37 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
=...|...|++.-+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|.++|+.-...++.+..--+-.+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35667788888888888888888888888888 6778888888888776 456677888887765544444444456677
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 004324 480 SLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~g~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 552 (761)
-+...++-+.|..+|+.-+.+ +..+ ...|..+|.-=..-|+...|..+=++|.+ .-|...+.+-+..-+
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 777888888888898866554 3334 46788888888888999888888888875 346655555444333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.17 Score=39.20 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
|.+.++++.|.++++.+.+-.+.+...|......|.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444444444332233334444444444444444444444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.83 Score=46.97 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=143.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHH--HHHc--CCCC-CHHHHHHHHH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLESDNGIPT----PAFVYKMEAYAKIGEFMKSLEIFRE--MQER--LGSA-SVPAYHKIIE 410 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~--m~~~--g~~p-~~~t~~~li~ 410 (761)
.-+|+.|+...+..+|+..++.|-. |. ..|.-|-++|.-.+++++|+++... ...+ |-+. ...+-..|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998853 33 3466677888888899999887532 1110 0000 0111111222
Q ss_pred HHHhcCCHHHHH-----------HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 004324 411 LLCKAEETELTE-----------SLMKEFVETGMKPLMPSYINLTNMYLNLGM--------------------HDRLHLA 459 (761)
Q Consensus 411 ~~~~~g~~~~A~-----------~l~~~m~~~g~~pd~~t~~~li~~~~~~g~--------------------~~~a~~~ 459 (761)
.+--.|.+++|. ++=+++.+ ...+-.|...|-..|+ ++.|.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 222334444443 33333222 2344555565554441 2334444
Q ss_pred HHHHHh-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 460 FSECLE-----KC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHM----HSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 460 ~~~m~~-----~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
|.+=++ +. -.--..|..|...|--.|+++.|....+.= .+-|.-......+..|-+++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 433221 10 011124555566666678888887665432 12221112345677788888888888888888
Q ss_pred HHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH------hhcc--
Q 004324 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR------FQFN-- 601 (761)
Q Consensus 530 ~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------~~l~-- 601 (761)
|+.-.. .+..++.+.++ ....-+|.+.|....+++.|+..+. .+++
T Consensus 258 YK~tl~--------------LAielg~r~vE------------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr 311 (639)
T KOG1130|consen 258 YKLTLN--------------LAIELGNRTVE------------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR 311 (639)
T ss_pred HHHHHH--------------HHHHhcchhHH------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876542 23344444333 4445567777777778888877765 1221
Q ss_pred ccchhhHHHHHHHHHhhhhccCCCC
Q 004324 602 ENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 602 p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
-.....+..|++.|...|..++|..
T Consensus 312 iGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 312 IGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 1233456678888888888887765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.9 Score=42.96 Aligned_cols=114 Identities=5% Similarity=-0.005 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCHHHHH
Q 004324 399 SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL---GMHDRLHLAFSECLEKCRPNRTIYG 475 (761)
Q Consensus 399 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~~~p~~~~~~ 475 (761)
+-|...|-.|-..|...|+.+.|..-|....+.- .++...+..+..++... ....++..+|+++++..+-|+.+-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4588999999999999999999999999999832 23455555555554433 2467899999999987788889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
-|...+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l---p~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL---PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC---CCCCchHHHHHH
Confidence 99999999999999999999999974 555566666643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.5 Score=37.79 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
.++..+.+.+.......+++.+...+. .+...+|.+|..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 445555555566666666666655543 3555566666666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.44 E-value=8.4 Score=41.30 Aligned_cols=165 Identities=10% Similarity=0.049 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHH
Q 004324 218 FHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDI 297 (761)
Q Consensus 218 ~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 297 (761)
...|-.+. |..+.+.-+++=++..+ +.||..+.-+++..=.. ..+.+|+++|++..+.|-. .
T Consensus 172 q~IMq~AW----RERnp~aRIkaA~eALe---i~pdCAdAYILLAEEeA-------~Ti~Eae~l~rqAvkAgE~----~ 233 (539)
T PF04184_consen 172 QEIMQKAW----RERNPQARIKAAKEALE---INPDCADAYILLAEEEA-------STIVEAEELLRQAVKAGEA----S 233 (539)
T ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHH---hhhhhhHHHhhcccccc-------cCHHHHHHHHHHHHHHHHH----h
Confidence 34444454 35666666666666664 45776665555533111 1577888888777655421 1
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 004324 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-PTPAFVYKMEA 376 (761)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~ 376 (761)
+..- ......|. .++.+..+...|=..+-..+-.++-+.|+.++|.+.+++|.+..... ...+...||.+
T Consensus 234 lg~s---~~~~~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 234 LGKS---QFLQHHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hchh---hhhhcccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 1000 00011111 11112222222223333455666668888888888888887654322 33456678888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKII 409 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li 409 (761)
+...+.+.++..++.+-.+...+. -...|++.+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 888888888888888765432211 234566544
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.4 Score=45.03 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC--
Q 004324 215 EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-- 292 (761)
Q Consensus 215 ~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~-- 292 (761)
..++.+++...... -...+++.+.+++.|.+. |++-+.++|-+..............-....|..+|+.|.+...-
T Consensus 60 ~~~la~~l~~~~~~-p~~~~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 60 RFILAALLDISFED-PEEAFKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 34444555443300 012356677788999987 89999888877554444311111123677888888888776532
Q ss_pred -cCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCH
Q 004324 293 -IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE--VLLSVLRVCAKEGD--VEDAEKTWLRLLESDNGIPT 367 (761)
Q Consensus 293 -p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~ 367 (761)
++..++..++....---.--.+.++.+|+.+...|+..+.. ..+.+|..+..... +..+.++++.+.+.|+++..
T Consensus 138 s~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 138 SPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred CccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 33444444442111000011245556666666666554322 22222222221111 23455555566666555444
Q ss_pred HHHH
Q 004324 368 PAFV 371 (761)
Q Consensus 368 ~~~~ 371 (761)
..|.
T Consensus 218 ~~yp 221 (297)
T PF13170_consen 218 MHYP 221 (297)
T ss_pred cccc
Confidence 4443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.68 Score=45.19 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
-+..++++|...|+.||..+-..|+.++.+.+.
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 456677777777777777777777777766654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=5.4 Score=38.29 Aligned_cols=219 Identities=14% Similarity=0.038 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFE-EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (761)
...+...+......... .....+......+...+.+..+...+...... ........+..+...+...+....+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444433221 13566777777888888888888887777652 22234566667777777888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 391 REMQERLGSASVPAYHKIIE-LLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.........+ ......... .+...|+.+.|...+.+.....- ......+......+...++.+.+...+....+..
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 8877653332 122222333 68888999999999988855221 1234445555555778889999999999888755
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 468 RP-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 468 ~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.. ....+..+...+...+.++.|...+....... |+ ...+..+...+...|..+++...+.+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD---PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC---cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 57888888889999999999999999988863 33 45555555555577778888888888875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.14 Score=40.50 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE---KCR---PN-RTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
+|+.+...|...|++++|+..|++..+ ... |+ ..+++.+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555555555442 111 11 4456666666777777777777666543
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.78 Score=44.82 Aligned_cols=48 Identities=2% Similarity=-0.043 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET-ELTESLMKEFVE 430 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~l~~~m~~ 430 (761)
-+-+++++++|...|+.||-.+-..|++++.+.+-. .+..+++-.|-+
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 356899999999999999999999999999988764 344555555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.64 E-value=12 Score=44.23 Aligned_cols=189 Identities=11% Similarity=0.023 Sum_probs=100.9
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
...+.|+.+-+-+++++++. .++..-|. |+ ...++++.|..-+.++- ...|.-.++---+.|.+.+|
T Consensus 861 q~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEA 927 (1265)
T ss_pred HHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhh
Confidence 33444555655555555522 11211111 11 12345555555443332 12233344444566666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLC----KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+.++. |+...+..+..+|+ ..+.+++|.-+|+..-+ ..-.+.+|-.+|++.+|..+..+
T Consensus 928 L~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 928 LALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred hheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHh
Confidence 66653 55555555554443 45566666555544322 12345667777778877777777
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+..+-.--..+--.|+.-+...|+.-+|-++..+-... ..-.+.-|++...|++|..+...-.
T Consensus 991 l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 991 LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 65321111223366777788888888888888777654 1223445666667777777665543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.63 E-value=5.9 Score=38.24 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=110.1
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
.+|....++++|...+.+..+ +.+-|..-|. ....++.|.-+.++|.+..- -+..|+--..+|..+|..+
T Consensus 39 vafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~klsE--vvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhCCcc
Confidence 445556667777666655442 1121222221 23445666666666665431 2455777788899999988
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET---G--MKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
-|-..+++.-+. .++-++++|++++++...- + .+--...+..+-..+.+...+++|-..
T Consensus 109 tAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 109 TAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred hHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 887777754321 1223444455554443321 1 000112233444556666666666655
Q ss_pred HHHHHh---CC--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-C-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 460 FSECLE---KC--RPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-I-GVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 460 ~~~m~~---~~--~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~-~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
|.+-.. .+ -++. ..|-+.|-.|.-..++..|.+.++.-.+.+. . +-+..+...||.+| ..|+.+++.+++.
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 544321 11 1222 2355566667777899999999998544321 1 23567888999888 5677776655543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.27 Score=38.16 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
-..|.+.+++++|.++++.+...+ +.+...|......|.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357889999999999999999975 556778888889999999999999999999964
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.51 E-value=11 Score=39.55 Aligned_cols=77 Identities=13% Similarity=-0.010 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESD---NGIPTPAFVYKMEAYAK---IGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
..++-+|....+++...++.+.|...- +.-...+--...-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 355556888888888888888887652 11111222223445556 788888888888866655666777776665
Q ss_pred HHH
Q 004324 410 ELL 412 (761)
Q Consensus 410 ~~~ 412 (761)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.36 E-value=5.3 Score=35.60 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
...+|..+.+.+.......+++.+...+. .+....|.+|..|++... .+..+.+.. .++......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34567777777888888888888877763 566778888888887643 333344332 1233334456677777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA-GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
.+.++++..++..+. - |...++.+... ++++.|.+++.+ .+ +...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~----~----~~~Al~~~l~~~~d~~~a~~~~~~---~~----~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDG----N----FKDAIVTLIEHLGNYEKAIEYFVK---QN----NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhc----C----HHHHHHHHHHcccCHHHHHHHHHh---CC----CHHHHHHHHHHHHc
Confidence 777777777666553 1 22223333333 667777776654 12 45566666665543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=11 Score=41.49 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH-
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR- 391 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~- 391 (761)
+-+...-+++|+++|-.|+.... ...|+-.|++.+|.++|.+ .|.. |-.+.+|.....++.|.+++.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 44445556778888887877644 3446667888888888754 3322 222344444444444444432
Q ss_pred -----------HHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHcCCCC---CHHHHHHHHHHHHh
Q 004324 392 -----------EMQE--RLGSASVPAYHKIIELLCKAEETELTESLMK------EFVETGMKP---LMPSYINLTNMYLN 449 (761)
Q Consensus 392 -----------~m~~--~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~------~m~~~g~~p---d~~t~~~li~~~~~ 449 (761)
+--+ +.++-.. +....+...|+.++|..+.. .+.+-+-+. +..+...+..-+-+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~ 759 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK 759 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh
Confidence 1110 0111111 12333445566666655431 112212121 22333333333334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
...+..|-++|.+|-. -.++++.....+++.+|..+-+...+- .||+ |.-...-++...+++||.+.
T Consensus 760 l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dV--y~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 760 LDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDV--YMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred ccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc---cccc--cchHHHHhhhhhhHHHHHHH
Confidence 4555666666666532 124456666667777777776666552 3443 22223445666677777777
Q ss_pred HHHH
Q 004324 530 YDLM 533 (761)
Q Consensus 530 ~~~m 533 (761)
|.+.
T Consensus 827 fhkA 830 (1081)
T KOG1538|consen 827 FHKA 830 (1081)
T ss_pred HHHh
Confidence 7665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.28 E-value=13 Score=39.39 Aligned_cols=388 Identities=13% Similarity=0.112 Sum_probs=219.8
Q ss_pred HHHhccCChhHHHHHHHHHHHc--CC-----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CC
Q 004324 152 VHCMRIRENETGFRVYEWMMQQ--HW-----------YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRV----PS 214 (761)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~m~~~--~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~----pd 214 (761)
+.+-+.+.+..|.+.+..-..+ +. .-++...-+..++.+.+.|++.+++.++++|..+=++ -|
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 3677899999999988777655 21 1234455677888999999999999999998765333 58
Q ss_pred HHHHHHHHHHHhcC----C-CC-------CCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHcCCCCCchhhHH
Q 004324 215 EMTFHILIVAYLSA----P-VQ-------GCLDEACSIYNRMIQLG-----GYQPRPSLHNSLFRALVSKPGGLSKYYLQ 277 (761)
Q Consensus 215 ~~~~~~li~~~~~~----~-~~-------g~~~~A~~l~~~m~~~~-----g~~p~~~t~~~ll~~~~~~~g~~~~g~~~ 277 (761)
+.+||.++-.+.++ - .. ..++.++-...+|...+ .+.|....+..++.-..-... .++.
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~----e~l~ 242 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK----ERLP 242 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH----hhcc
Confidence 88888866555521 0 00 11222233333333211 244555555555444333211 1333
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChHHHHH
Q 004324 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE----GKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 278 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
--.++++.....-+.|+.+..-.-+. ....+ +.+++..+-+.+....+.+ =..+|..++..+.+.++...|.+
T Consensus 243 ~~mq~l~~We~~yv~p~~~LVi~~L~-~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 243 PLMQILENWENFYVHPNYDLVIEPLK-QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHH-HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44444444445555666544332221 11222 3445544444433322111 24578889999999999999999
Q ss_pred HHHHHHhCCCCCCHH-----HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHHhcCC-HH
Q 004324 354 TWLRLLESDNGIPTP-----AFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVP-AYHKII---ELLCKAEE-TE 419 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~-----~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li---~~~~~~g~-~~ 419 (761)
.+.-+.-..+...+. +-.++.+..|. .-+...=+.++.+.....+ |.. .-..|+ .-+-+.|. -+
T Consensus 320 ~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 320 YLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccH
Confidence 998777655332110 01123333331 1233344556666655432 211 112233 23555565 78
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHHh-CCCC----CHHHHHHHHHH--HHhcC
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLT----NMYLNL---GMHDRLHLAFSECLE-KCRP----NRTIYGIYLES--LKNAG 485 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li----~~~~~~---g~~~~a~~~~~~m~~-~~~p----~~~~~~~li~~--~~~~g 485 (761)
+|+++++...+-- .-|...-|.+. .+|... ..+.+-..+-+-+.+ |+.| +...-|.|-++ +-..|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8999999988732 22433333332 233322 334445555454555 6655 34455666554 45679
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHH-HHHHHHhhhhh
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWME-KLDYVLSLNRK 557 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~~~~~~~l~~~ 557 (761)
++.++.-.-.-..+ |.|...+|..+.-.+....++++|.+++..+. |+.++.+ +...++.++.+
T Consensus 477 ey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 477 EYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSKVQKALALCQK 541 (549)
T ss_pred cHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHHHHHHHHHHHH
Confidence 99998866665555 77999999999988889999999999999775 5555543 23445555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.44 Score=50.41 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN-R---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
+...++.+..+|.+.|++++|...|++.++. .|+ . .+|..+..+|.+.|++++|++.+++..+.+ .| .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ch---hHH
Confidence 4678889999999999999999999987763 344 3 458999999999999999999999988853 11 232
Q ss_pred HHHH--HHHhCCCHHHHHHHHHHHHHcCCcc
Q 004324 512 IILS--AYLSSGDFVKAEKIYDLMCLKKYEI 540 (761)
Q Consensus 512 ~li~--~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (761)
.+.. .+..-.+..+..++++.+.+-|...
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 2211 1122234456777788777766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.13 E-value=12 Score=38.70 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (761)
.+.+..|.-|...|....|.++-.+. . .|+-.-|-..|.+|++.++|++-.++-.. + -..+-|-.++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 35566778888899998888886554 2 36888999999999999999987776432 2 2448899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
.+.|+..+|..+... .++..-+.+|.++|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988876 2235678899999999999765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.11 E-value=13 Score=39.02 Aligned_cols=164 Identities=13% Similarity=0.096 Sum_probs=106.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLG---SASVPAYHKIIELLCK---AEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
.++-.|-...+++...++++.|...-. .-....--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 455569999999999999999986511 1011111122335556 8999999999999777666788889988887
Q ss_pred HHHhc---------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH----HHHHHH----HHhhhCCCCC--CC
Q 004324 446 MYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE----KAEEIF----NHMHSDQTIG--VN 506 (761)
Q Consensus 446 ~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~----~A~~l~----~~m~~~g~~~--p~ 506 (761)
.|-.. ..+++|...|.+.-+ ..||..+--.+...+...|.-. +..++- ....++|... .|
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 76542 236667777766543 2355444444444455555322 233332 2222333222 35
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
---+.+++.++.-.|++++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 556678999999999999999999999953
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.6 Score=44.85 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
+...++.+..+|.+.|++++|...|+..++..+.... .+|..+..+|.+.|+.++|++.|++..+.+ . ..|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHHHH
Confidence 5677888899999999999999999998887654221 458889999999999999999999888751 1 112211
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHHcCC
Q 004324 409 IE--LLCKAEETELTESLMKEFVETGM 433 (761)
Q Consensus 409 i~--~~~~~g~~~~A~~l~~~m~~~g~ 433 (761)
.. .+....+..+..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 11 11122233455566666666553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.79 E-value=15 Score=38.89 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004324 190 MGKERKFAKCRDIFDDIINQGRV-P----SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (761)
Q Consensus 190 ~~~~g~~~~A~~~f~~m~~~g~~-p----d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~ 264 (761)
+-+.+++.+|.++|.++-+.--. | ..+.-+.+|++|. ..+.+.-...+....+..|-. .|-.+..++
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff----l~nld~Me~~l~~l~~~~~~s----~~l~LF~~L 87 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF----LNNLDLMEKQLMELRQQFGKS----AYLPLFKAL 87 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH----HhhHHHHHHHHHHHHHhcCCc----hHHHHHHHH
Confidence 34667777777777776543111 1 1344567888887 577777777777776653322 333333332
Q ss_pred HcCCCCCchhhHHHHHHHHHHHHHc--CCC-cCH---------HHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC----C
Q 004324 265 VSKPGGLSKYYLQQAEFIFHNLLTS--GLE-IQK---------DIYSGLIWLHSYQDNIDKERISLLKKEMQQAG----F 328 (761)
Q Consensus 265 ~~~~g~~~~g~~~~A~~~~~~m~~~--~~~-p~~---------~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g----~ 328 (761)
..-. .+.+.+|.+.+...... +.. |.. +.+-..+.+++....|++.++..++++|...= .
T Consensus 88 ~~Y~----~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 88 VAYK----QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHH----hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 2111 14777777777665443 222 211 11112233456666777777766666655432 2
Q ss_pred CCCHHHHHHHHHHHHh
Q 004324 329 EEGKEVLLSVLRVCAK 344 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~ 344 (761)
.-+..+|+.++-.+++
T Consensus 164 ~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSR 179 (549)
T ss_pred cccHHHHHHHHHHHhH
Confidence 3566666665555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.1 Score=33.55 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=26.0
Q ss_pred hhccccchhhHHHHHHHHHhhhhccCCC
Q 004324 598 FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (761)
Q Consensus 598 ~~l~p~~~~~~~~l~~~~~~~g~~~~a~ 625 (761)
++++|+++.+|..++.+|...|++++|.
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6789999999999999999999999886
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.25 E-value=9.6 Score=41.97 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHhcC-CCCCC
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG-RVP-----SEMTFHILIVAYLSA-PVQGC 233 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p-----d~~~~~~li~~~~~~-~~~g~ 233 (761)
.-+..+|..++.- +||. ...+++..+=.|+-+.+++.+.+-.+.+ +.- -...|+.++..++.. .....
T Consensus 174 ~~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 174 YFGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 3456677777765 5554 3567888888899999999988876643 221 124577777777631 01567
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL 287 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~ 287 (761)
.+.|.+++..+.+. -|+...|...-.-+.+.. |++++|.+.|+...
T Consensus 249 ~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~-----g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 249 LEEAEELLEEMLKR---YPNSALFLFFEGRLERLK-----GNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHh-----cCHHHHHHHHHHhc
Confidence 88999999999875 489888877766666655 58999999998765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.24 E-value=15 Score=37.41 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=13.2
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~ 534 (761)
.+.+.+++++|.++|+--.
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456788888888877544
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.19 E-value=7.2 Score=33.81 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
++.+.+.|+-+.-.+++.++.+. -.++....-.+..||.+.|+..++.+++++.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44444444444444444444321 12333344444445555555555555554444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.18 E-value=13 Score=36.54 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhH
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKR 591 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 591 (761)
.+..-|.+.|.+..|..-+++|++. +.-.+.+ .-..-.|..++...|..++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~----------------------------~eaL~~l~eaY~~lgl~~~ 222 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAV----------------------------REALARLEEAYYALGLTDE 222 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccch----------------------------HHHHHHHHHHHHHhCChHH
Confidence 3456688899999999999999874 5444443 2223335556777788888
Q ss_pred HHHHHH-hhccccch
Q 004324 592 KRHMIR-FQFNENSR 605 (761)
Q Consensus 592 a~~~~~-~~l~p~~~ 605 (761)
|....+ ++.++.+.
T Consensus 223 a~~~~~vl~~N~p~s 237 (254)
T COG4105 223 AKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHhcCCCC
Confidence 888877 66665554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=5 Score=36.50 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=43.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
-..|++++|+.+|.-+...++- +..-|..|..++-..+++++|...|...-..+. -|...+-.+-.+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666655554432 344445555555555666666666554433221 12222333445555556666666
Q ss_pred HHHHHHHH
Q 004324 423 SLMKEFVE 430 (761)
Q Consensus 423 ~l~~~m~~ 430 (761)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=4.7 Score=36.65 Aligned_cols=89 Identities=13% Similarity=-0.015 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 004324 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~ 524 (761)
.-+...|++++|..+|.-+..--.-|..-|..|..+|-..+++++|...|......+ .-|...+-..-.+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHH
Confidence 335567899999999988775334556667788888888899999999988765543 124455566677888899999
Q ss_pred HHHHHHHHHHH
Q 004324 525 KAEKIYDLMCL 535 (761)
Q Consensus 525 ~A~~~~~~m~~ 535 (761)
+|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998886
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.62 E-value=6.4 Score=42.77 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
..-.+.++.-+-+.|..+.|+.+-..-..+ ..-..+.|+++.|.++.++ .++...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 344566666666667666666665432221 2333456666666655432 2355567777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A 526 (761)
..+.|+++-|.+.|.+.. -|..|.-.|.-.|+.+.-.++-+....+| -++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHH
Confidence 777777777777666643 24555566666777766666666666665 144445555556777766
Q ss_pred HHHHHH
Q 004324 527 EKIYDL 532 (761)
Q Consensus 527 ~~~~~~ 532 (761)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.51 E-value=16 Score=36.50 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004324 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (761)
Q Consensus 339 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (761)
.......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 34556788888888888888876544 3455667788888899999999998887654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.75 E-value=4.8 Score=41.89 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|.-+|.+.+.+..|++.-+..++--++|+...---..+|...|+++.|+..|+++.+
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3333444444444444444444433344444444444555555666666666666555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.69 E-value=6.4 Score=41.01 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=54.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQER-----LGSA---------SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
-+.|.|.|++..|..-|+..... +..+ -..+++-|..+|.+.+++.+|++.-...+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 36777778888887777765432 1111 01234444445555555555555555555543 344444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
.--=..+|...|.++.|+..|+++.+--+-|..+-+-|+.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44445555555555555555555554333333333333333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.68 E-value=2.6 Score=42.18 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCccChHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWM 545 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 545 (761)
..++..++..+..+|+.+.+...+++..... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|.|.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 4567778888888889999999988888875 45788899999999999999998888888765 3666666654
Q ss_pred HHHHHH
Q 004324 546 EKLDYV 551 (761)
Q Consensus 546 ~~~~~~ 551 (761)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.57 E-value=4.2 Score=35.03 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=67.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHHhCCCH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG--VNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--p~~~t~~~li~~~~~~g~~ 523 (761)
+.+..|+++.|++.|.+.+.-++.+...||.-..+|--.|+.++|++=+++..+..+-+ .-..+|.---..|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 46677888888888888887777888899999999999999999998888877642111 1122344444457778888
Q ss_pred HHHHHHHHHHHHcC
Q 004324 524 VKAEKIYDLMCLKK 537 (761)
Q Consensus 524 ~~A~~~~~~m~~~g 537 (761)
+.|..=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.26 E-value=30 Score=37.36 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNI 512 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~--~~t~~~ 512 (761)
..+-.-|..++-+.|+.++|.+.|.+|.+..+. +......||.+|...+.+.++..++.+-.+.. -|. ..+|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~--lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS--LPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc--CCchHHHHHHH
Confidence 333345566666889999999999999863333 45578889999999999999999999876543 233 456776
Q ss_pred HHHHHHhCC
Q 004324 513 ILSAYLSSG 521 (761)
Q Consensus 513 li~~~~~~g 521 (761)
.+-.+...|
T Consensus 337 ALLkaRav~ 345 (539)
T PF04184_consen 337 ALLKARAVG 345 (539)
T ss_pred HHHHHHhhc
Confidence 664444343
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.06 E-value=14 Score=40.70 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=80.0
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDF-----ALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIV 223 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~ 223 (761)
..+-.|+=+.|++.+....+.+.+.... ..|...+..++- ....+.|.++++.+.++ -|+..-|...-.
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~g 274 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEG 274 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 4455688899999999888766343222 223333333332 45678999999999986 689888887777
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC
Q 004324 224 AYLSAPVQGCLDEACSIYNRMIQLGGYQ---PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (761)
Q Consensus 224 ~~~~~~~~g~~~~A~~l~~~m~~~~g~~---p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 290 (761)
-+.. ..|++++|++.|++......-. .....|-.....+.. +++++|...|..+.+.+
T Consensus 275 R~~~--~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-------~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 275 RLER--LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-------HDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHH--HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-------chHHHHHHHHHHHHhcc
Confidence 6665 6899999999999765310011 112223333322222 26777777777776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.68 E-value=7.6 Score=33.55 Aligned_cols=56 Identities=20% Similarity=0.091 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
-+++..|+++.|++.|.+...- .+-+...||.-..++.-.|+.++|++=+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3678899999999999999886 5668899999999999999999999999998863
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.54 E-value=30 Score=36.31 Aligned_cols=236 Identities=9% Similarity=-0.052 Sum_probs=107.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCCCCCH
Q 004324 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 156 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-~~~~li~~~~~~~~~g~~ 234 (761)
+..++..|+..+...++.. +.++..|.--...|.-.|++++|.-=.+.-.+. .|+.. .+.-.-.++. ..+..
T Consensus 61 k~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~---a~~~~ 133 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHL---ALSDL 133 (486)
T ss_pred HHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhh---hhHHH
Confidence 5566777888888887764 445555655555566666666665444333221 11110 1111111111 12222
Q ss_pred HHHHHHHH---------------HHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHH
Q 004324 235 DEACSIYN---------------RMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (761)
Q Consensus 235 ~~A~~l~~---------------~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (761)
.+|.+.|+ ......--+|...+|-.+=.-|.-.. |+.++|.++-..+++.+. ...+.
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~-----~~~~~a~~ea~~ilkld~---~n~~a 205 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL-----GDYDEAQSEAIDILKLDA---TNAEA 205 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc-----ccchhHHHHHHHHHhccc---chhHH
Confidence 22322222 11111011244445544444444333 366666666655555442 24455
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
.++...++--.++.+.+...|++-++. .|+...-. ..-...+.++.+.+.| +...+
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk----------~~~~~~k~le~~k~~g------------N~~fk 261 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK----------SASMMPKKLEVKKERG------------NDAFK 261 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH----------hHhhhHHHHHHHHhhh------------hhHhh
Confidence 555555555566667777776665543 33332211 1111122222233322 23345
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQER---LGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.|++..|.+.+.+.+.. .+.|+...|--...+..+.|+.++|+.--++..+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 56666666666555432 2333344444444445555555555555444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.38 E-value=20 Score=34.10 Aligned_cols=187 Identities=18% Similarity=0.113 Sum_probs=141.1
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 345 EGDVEDAEKTWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666665432 13567788889999999999999999888752 23345566777778888888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 423 SLMKEFVETGMKPLMPSYINLTN-MYLNLGMHDRLHLAFSECLEKCRP----NRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 423 ~l~~~m~~~g~~pd~~t~~~li~-~~~~~g~~~~a~~~~~~m~~~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
..+.........+ ......... .+...|+++.|...+..... ..| ....+......+...++.++|...+.+.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988855444 222223333 78999999999999999876 333 4455555556678889999999999999
Q ss_pred hhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 498 HSDQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 498 ~~~g~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.... +. ....+..+-..+...+++++|...+.....
T Consensus 194 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 194 LKLN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HhhC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 8873 34 468888889999999999999999999985
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.28 E-value=18 Score=33.30 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004324 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (761)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (761)
.+.++.+.+.|++|+...|..+|..+.+.|+.. .+..+...++-+|.......+-.+.. ....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 345556667778888888888888888888754 34555666666665555544433322 223344444444421
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
. ...+..++..+...|++-+|+++.+...... ...-..++.+-.+.++...=..+|+-..++
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD-----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 1256677788888899999998887754332 122244577777777765555555554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.98 E-value=6.3 Score=38.88 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 416 EETELTESLMKEFVETGMK--PLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~--pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
|++..|...|...++..-. -....+-.|...+...|+.++|..+|..+.+ ..+.-....--|.....+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 3444555555444443200 0112333344444444444444444444443 1122233344444444455555555
Q ss_pred HHHHHHhhhC
Q 004324 491 EEIFNHMHSD 500 (761)
Q Consensus 491 ~~l~~~m~~~ 500 (761)
..+|++..++
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.85 E-value=27 Score=34.94 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~ 267 (761)
.+..++-+|+-|-. -...++....-|-...+ |+.++...--+++.++.-.
T Consensus 110 ~~qvf~KliRRyky--LeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l~ 159 (412)
T KOG2297|consen 110 SVQVFQKLIRRYKY--LEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLLS 159 (412)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHh
Confidence 45556666665542 12333333332333333 5666666666666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.59 E-value=36 Score=36.06 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=100.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK---AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
+-..|.-..+-++....|+..... ...--+++.+=+. .|+++.-.+++-.-+. --..+|..+++.-.+
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r 409 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLR 409 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHH
Confidence 345556667777777777766542 2221223322222 2335333333322221 235678889998888
Q ss_pred cCCHHHHHHHHHHHHh-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH-HHHHHHHHhCCCHHHH
Q 004324 450 LGMHDRLHLAFSECLE-K-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC-NIILSAYLSSGDFVKA 526 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~-~~li~~~~~~g~~~~A 526 (761)
..-++.|+.+|.++.+ + ..+++..++++|.-++. |+...|.++|+-=..+ + ||...| +-.+.-+..-++-+.|
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f-~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--F-PDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--C-CCchHHHHHHHHHHHHhCcHHHH
Confidence 8889999999999987 5 67899999999998886 7888999999875554 2 454443 4566677788888899
Q ss_pred HHHHHHHHH
Q 004324 527 EKIYDLMCL 535 (761)
Q Consensus 527 ~~~~~~m~~ 535 (761)
..+|+.-++
T Consensus 486 raLFetsv~ 494 (660)
T COG5107 486 RALFETSVE 494 (660)
T ss_pred HHHHHHhHH
Confidence 999885543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.58 E-value=7.4 Score=42.30 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (761)
.++++.+.++.+.=.-..-.| ..-.+.++.-+-+.|..+.|.++-..- ..-.+...++|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHH
Confidence 456666655553111001112 444778888888899999888875332 1224566788899888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004324 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (761)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (761)
-++. .+...|..|-....+.|+++.|.+.|.+..+ |..|+-.|.-.|+.+...++-+.....-.
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 6543 3667899999999999999999888877543 55677778888888777777666554211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 470 NRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
+|....++...|++++..+++.+-
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455555556667777777776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.57 E-value=4.7 Score=40.37 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRSCNI 512 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~~~t~~~ 512 (761)
.++..++..+..+|+.+.+...++.+..--+-+...|..+|.+|.+.|+...|+..|+++.+ .| +.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg-i~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG-IDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC-CCccHHHHHH
Confidence 45666777777777777777777777765667788888888888888888888888877655 45 7787777766
Q ss_pred HHHH
Q 004324 513 ILSA 516 (761)
Q Consensus 513 li~~ 516 (761)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.27 E-value=21 Score=32.84 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 004324 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (761)
Q Consensus 318 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 350 (761)
+..+.+.+.|+.|+...+..+|..+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444445555555555555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.80 E-value=32 Score=34.96 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=98.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT----NMYLNLGMHD 454 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li----~~~~~~g~~~ 454 (761)
-.|+..+|-..++++.+. .+-|..+++-.=.+|.-+|+.+.-...++++... ..||...|..+= -++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356677777777777764 5667777777777888888887777777777653 134443333332 2334678888
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT--IGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
+|.+.-++..+-.+.|.-.-.++...+-..|+..++.++..+-...-. --.-..-|-...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888877777664456666667777777788888888887665443210 000011222333345566888888888876
Q ss_pred HHHcC
Q 004324 533 MCLKK 537 (761)
Q Consensus 533 m~~~g 537 (761)
=+-+.
T Consensus 273 ei~k~ 277 (491)
T KOG2610|consen 273 EIWKR 277 (491)
T ss_pred HHHHH
Confidence 54333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.14 E-value=11 Score=33.46 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=45.8
Q ss_pred hhccCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 306 SYQDNIDKERISLLKKEMQQAGF--EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
...+.|++++|.+.|+.+..+-. .-...+--.++.+|.+.+++++|...+++.++..+.-.-+-|...+.+++.-
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34456677777777777766521 1123444567777777777777777777777776553344455555555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.06 E-value=2.3 Score=29.04 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
|..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=86.75 E-value=50 Score=35.57 Aligned_cols=150 Identities=11% Similarity=0.029 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 383 FMKSLEIFREMQE-RLGSAS-VPAYHKIIELLCK---------AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 383 ~~~A~~~~~~m~~-~g~~p~-~~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
.+.|+.+|.+... ..+.|+ ...|..+-.++.. .....+|.++-+...+.+ .-|..+...+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4567777777662 123343 2333333322221 234556777777777765 557777777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
+++.|..+|++...-.+....+|....-.+.-+|+.++|.+.+++..+....+--.......|+.|+.++ .++|++++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 8999999999887644555666666666677789999999999987665412222233334445666655 567777665
Q ss_pred HHH
Q 004324 532 LMC 534 (761)
Q Consensus 532 ~m~ 534 (761)
+=.
T Consensus 432 ~~~ 434 (458)
T PRK11906 432 KET 434 (458)
T ss_pred hcc
Confidence 443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.00 E-value=18 Score=36.69 Aligned_cols=117 Identities=8% Similarity=0.032 Sum_probs=66.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHH--HHHHHcCChHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKM--EAYAKIGEFMK 385 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li--~~~~~~g~~~~ 385 (761)
.+|...+|...++++.+. .+.|...++-.=.+|.-.|+.+.-...++++.-. +......+|..=| -++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 455666666666666653 4446666666667777777777777666666654 3222233333222 23335677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKE 427 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 427 (761)
|.+.-++..+-+ +-|..+-.++...+--+|+..++.+++.+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 776666554432 12444445555666666666666665443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=9.6 Score=40.76 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCCCCCHHH
Q 004324 158 RENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHILIVAYLSAPVQGCLDE 236 (761)
Q Consensus 158 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~~~~~li~~~~~~~~~g~~~~ 236 (761)
....+|.++-+..++.+ +.|......+..+++-.|+++.|..+|++-...+. .++...|..++..++ |+.++
T Consensus 318 ~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-----G~~~~ 390 (458)
T PRK11906 318 LAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN-----EKIEE 390 (458)
T ss_pred HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-----CCHHH
Confidence 34566788888888887 66888888888888888899999999999887532 234566777777775 99999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHH
Q 004324 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286 (761)
Q Consensus 237 A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m 286 (761)
|.+.+++..+....+.-.......|..|+.. .++.|..++-+-
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 433 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPN-------PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCC-------chhhhHHHHhhc
Confidence 9999999766433333344445555567765 688888887543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.92 E-value=16 Score=36.12 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSAS-VPAYHKII 409 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~t~~~li 409 (761)
.|+.-+.. .+.|++..|...|...++..+. -....+-.|...+...|++++|..+|..+.+. +-.|- ..++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 2344466666666555554322 11122333555555555555555555555432 11111 13333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004324 410 ELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~ 430 (761)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 444555555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.69 E-value=2.9 Score=28.53 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
++..+...|...|++++|.++|+++++..+-|...|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344455555555555555555555555444444444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.62 E-value=42 Score=33.71 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=88.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 453 (761)
.......|+..+|..+|.......- -+...--.++.+|...|+.+.|..++..+-..--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3455677888888888888765421 134445567788888899999988888765432222222222223334343333
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 004324 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (761)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~ 524 (761)
.+...+-...-. .+-|...--.+...|...|+.++|.+.+-.+..++.---|...-..|+..+.--|..+
T Consensus 220 ~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 333333333321 2337777777888888888888888877776665322224445555666665555433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.9 Score=27.96 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888855
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.10 E-value=13 Score=34.70 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV--PAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.+..+.+.|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556667777777777777777776665433332 2345566666666666666665555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.52 E-value=43 Score=32.91 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004324 309 DNIDKERISLLKKEMQQAGF--EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA 378 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 378 (761)
+.|++++|.+.|+.+..+-. .-...+.-.++.++-+.+++++|....++..+.-+.....-|..-|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34445555555554443311 11233344444555555555555555555555433322233333344433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.10 E-value=2.2 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
+|+.|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888843
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.37 E-value=24 Score=32.93 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHH--H
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYG--I 476 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~--~ 476 (761)
..+..+..-|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+... ....|...-| .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3567788888888899999888888888654444 34567778888888888888877777654 1111111111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhhh
Q 004324 477 YLE--SLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 477 li~--~~~~~g~~~~A~~l~~~m~~ 499 (761)
... .+...|++.+|-++|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 12235677777777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.90 E-value=8.9 Score=31.20 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+.++.++..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44445555555566666666666666666666666666666666544433444555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=81.72 E-value=51 Score=34.00 Aligned_cols=132 Identities=16% Similarity=0.044 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CC----CCCHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVE-TGMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLE--KC----RPNRTI 473 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~p~~~~ 473 (761)
+|..+-.++-+.-++.+++.+-+.-.. .|..|. -....++..+....+.++++++.|+...+ .- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444433332 232221 12334456666667778888888887764 11 123457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC-C------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQ-TIGV-N------TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~p-~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|-.|-..|.+..++++|.-+..+..+-- .+.. | ..+...|.-++...|....|.+.-++..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 8888888888888888776665543310 0110 1 11233455577788888888777776653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.59 E-value=32 Score=39.43 Aligned_cols=217 Identities=13% Similarity=0.099 Sum_probs=93.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc---CChH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKI---GEFM 384 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~---g~~~ 384 (761)
-.|+++.|.+.+-+ ..+...|.+.+...+.-|.-.+-..... ..+..... .|...-+..||..|++. .+..
T Consensus 270 LtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~ 344 (613)
T PF04097_consen 270 LTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPR 344 (613)
T ss_dssp HTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HH
T ss_pred HHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHH
Confidence 36779999988876 2334446666666555544322222211 33332211 11124577889999884 5677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC---------------CCC-CHHHHH---HHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIEL-LCKAEETELTESLMKEFVETG---------------MKP-LMPSYI---NLT 444 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~l~~~m~~~g---------------~~p-d~~t~~---~li 444 (761)
+|++.|--+....-+.....+...+.- ....+++ ..++..+...| +.. +..... ...
T Consensus 345 ~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref---~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 345 EALQYLYLICLFKDPEQRNLFHECLRELVLETREF---DLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp HHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--H---HHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCH---HHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Confidence 888888776554221112222222221 1222211 12222211111 221 222222 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHhhhCCC----C-CCCH
Q 004324 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE-SLKNAGN-----------IEKAEEIFNHMHSDQT----I-GVNT 507 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~-~~~~~g~-----------~~~A~~l~~~m~~~g~----~-~p~~ 507 (761)
.-+...|++++|..+|.-..+ ...-....|.++. ..+.... ...|.++.+.....+. + +.+.
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~-~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEE-YDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 345567888888887776542 0001122233222 2222222 4456655555444321 1 1234
Q ss_pred HHHHHHHH-----HHHhCCCHHHHHHHHHHHH
Q 004324 508 RSCNIILS-----AYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 508 ~t~~~li~-----~~~~~g~~~~A~~~~~~m~ 534 (761)
.|+..|+. .+.+.|++++|++.++++.
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 56666655 3468999999999888874
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.88 E-value=2.1 Score=27.41 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+-|..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666665554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.76 E-value=90 Score=33.89 Aligned_cols=172 Identities=19% Similarity=0.172 Sum_probs=120.3
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
..+.++..+.-++.+..+|...| .+...|-.++.+|... .-+.-..+|+++.+..+. |++.-.-|..-|-+ ++..
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~s 148 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKS 148 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchh
Confidence 56667777777788888888765 3677888999999888 556777888888887764 44444556666655 8888
Q ss_pred HHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 385 KSLEIFREMQERLGSA-----SVPAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
.+...|.+...+=++. =...|..|+.-- ..+.+..+.+...+.. .|..--.+.+.-+-.-|....++.+|.+
T Consensus 149 k~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~ 226 (711)
T COG1747 149 KAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIR 226 (711)
T ss_pred hHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHH
Confidence 8999998887653321 112455555321 3456667777777665 4555556777777788888999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 459 AFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
++..+.+....|+-+-..+|.-+..
T Consensus 227 Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 227 ILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHH
Confidence 9998887666677666666665544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=80.48 E-value=75 Score=32.84 Aligned_cols=203 Identities=12% Similarity=0.088 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---H
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESD--NG---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQE-RLGSAS---V 402 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~ 402 (761)
-.+|..+..+.++.|.++++...--.-...- .. .-...|-.+-.++-+.-++.+++.+-..-.. .|..|. -
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 3466677778888888887765322111110 00 0123444455555555555555554433221 222221 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGM-K----PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRT 472 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~----pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~ 472 (761)
..-.+|-.++.-.+.++++++.|+...+--- . .....+..|-..|....+.++|.-+..+..+ ++..-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 1223455677777789999999988776211 1 1246788899999999999998877766543 2222223
Q ss_pred HHHH-----HHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 473 IYGI-----YLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 473 ~~~~-----li~~~~~~g~~~~A~~l~~~m~~----~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
-|.. |.-+|-..|++.+|.+..++..+ .|.-..-.....++.+-|...|+.+.|..-|+...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3333 34567788998888888877543 45111123344567788889999999988777665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.44 E-value=25 Score=31.21 Aligned_cols=89 Identities=12% Similarity=-0.125 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC
Q 004324 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG 331 (761)
Q Consensus 252 p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~ 331 (761)
|....|+.-..++-+ |++++|.+.|+.+..+-....-..-.-|-+++++-+.+++++|...+++.++....--
T Consensus 9 ~~~~ly~~a~~~l~~-------~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQK-------GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 455667777777665 4999999999999887765554555566677999999999999999999988753333
Q ss_pred HHHHHHHHHHHHhcCC
Q 004324 332 KEVLLSVLRVCAKEGD 347 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~ 347 (761)
.+-|...+.+++.-..
T Consensus 82 ~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQ 97 (142)
T ss_pred CccHHHHHHHHHHHHH
Confidence 3556666666554433
|
|
| >PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X | Back alignment and domain information |
|---|
Probab=80.18 E-value=4.8 Score=31.50 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHHHhhcCCceeEe---ecCcEEEEEEeCCCHHHHHHhh
Q 004324 671 VSSEGIALVFKTLKARSLDCRVK---KKGRVFWIGFLGSNSTLFWKLI 715 (761)
Q Consensus 671 g~~~e~~~l~~~m~~~gl~~~~~---~~~~~~~i~i~~~~~~~~~~li 715 (761)
.+.+-+..+...+.+.|+.+++. ..+..|++.|.+++...|.+.|
T Consensus 29 ~s~~ll~~v~~lL~~lGi~~~i~~~~~~~~~y~l~i~~~~~~~f~~~I 76 (77)
T PF14528_consen 29 KSKELLEDVQKLLLRLGIKASIYEKKRKKGSYRLRISGKSLKRFLEKI 76 (77)
T ss_dssp S-HHHHHHHHHHHHHTT--EEEEEEECTTTEEEEEEECHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCeeEEEEEcCCCceEEEEECchHHHHHHHHh
Confidence 45555666666668899999997 4455799999998888887765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A Length = 235 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 37/210 (17%)
Query: 552 LSLNRKEVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENS---RM 606
L N K +K K + L+ EQ E IGL+LG I S ++ K + ++F++ + +
Sbjct: 12 LGPNSKLLKEYKSQLIELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEWKNKAYMDHV 71
Query: 607 HSVLRRYLYDQYHE------------------WLHPSFK-----FWPKGRLVIPK-LIHR 642
+ +++ H+ + H +F F + IP L+
Sbjct: 72 CLLYDQWVLSPPHKKERVNHLGNLVITWGAQTFKHQAFNKLANLFIVNNKKTIPNNLVEN 131
Query: 643 WLTPRALAYWFMYGGHRTSVGDILLKLKV-------SSEGIALVFKTLKAR-SLDCRVKK 694
+LTP +LAYWFM G + + + E + + K L+ + L+C VK
Sbjct: 132 YLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKI 191
Query: 695 KGRVFWIGFLGSNSTLFWKLIEPYVLDELK 724
I + +F+ LI+PY++ ++
Sbjct: 192 NKNKPIIYIDSMSYLIFYNLIKPYLIPQMM 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 9e-17
Identities = 109/669 (16%), Positives = 200/669 (29%), Gaps = 187/669 (27%)
Query: 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAK---CRDI------------FDDIINQGR 211
+E Q+ Y+ D L+ + E F C+D+ D II
Sbjct: 9 FETGEHQYQYK-DI-----LSVF---EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK- 58
Query: 212 VPSEMTFHILIVAYLSAP---VQGCLDEACSI-YNRMIQLGGYQPR-PSLHNSLFRALVS 266
+ L LS VQ ++E I Y ++ + R PS+ ++
Sbjct: 59 -DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 267 K----PGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKE 322
+ +KY + + + + L + LE++ + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKN---VLIDG---------------- 157
Query: 323 MQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382
+ G GK + L VC V+ D I F + +
Sbjct: 158 V--LGS--GKTWV--ALDVCLSY-KVQCK---------MDFKI----F------WLNLKN 191
Query: 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM--PSY 440
+ EM ++L ++I + L ++ ++ L+ Y
Sbjct: 192 CNSPETVL-EMLQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 441 IN----LTNMYLNLGMHDRLHL-AFSECLEKCR--------------PNRTIYGIYLESL 481
N L N+ + AF+ C+ T I L+
Sbjct: 244 ENCLLVLLNVQ------NAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 482 KNAGNIEKAEEIF----NHMHSD---QTIGVNTRSCNII---LSAYLSSGDFVKAEKIYD 531
++ + + + D + + N R +II + L++ D K
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 532 L-----MCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL------NLSSEQRENLIGLLL 580
L L +E A K+ LS+ P L ++ ++ L
Sbjct: 355 LTTIIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 581 GGLCIESDEKRKR---HMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIP 637
+E K I + L R + D Y+ IP
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN----------------IP 456
Query: 638 KLIHRW--LTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCR-VKK 694
K + P Y++ + GH LK E + L F+ + LD R +++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHH-------LKNIEHPERMTL-FRMV---FLDFRFLEQ 505
Query: 695 KGR---VFWIGFLGSNSTLF-WKLIEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDS 750
K R W +TL K +PY+ D N+ R ++ ++F +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICD-------NDPKYERLVNAI-LDFLPKIEE 557
Query: 751 DEKASDYSD 759
+ S Y+D
Sbjct: 558 NLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 7e-12
Identities = 84/623 (13%), Positives = 182/623 (29%), Gaps = 203/623 (32%)
Query: 62 SQEEKWDMFKNSDAESGS-VDFDVGTAGSEMRHLGEPVVE--VIELEELPEQWRRAKLAW 118
S+EE + + DA SG+ F + E +V+ V E+ + ++ + +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWT------LLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 119 LCKELPS-------------HKGGTLVRILNAQ--------KKWLRQ-EDGTYLAVHCMR 156
++ PS + + N ++ L + + + +
Sbjct: 101 EQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 157 -----------IRENET----GFRVYEW--------------MMQQHWYRFDF------- 180
+ F+++ W M+Q+ Y+ D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 181 ----------ALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH--ILIVAYLSA 228
++ +L + K + + C + ++ N + + IL+
Sbjct: 219 HSSNIKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTR-FK 275
Query: 229 PVQGCLDEACSIYNRMIQL-GGYQPRPSLHNSLF-RALVSKPGGLSKYYLQQAEFIFHNL 286
V L A + + + P SL + L +P L + + +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPR----EVLTT-NPR 328
Query: 287 LTS--GLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344
S I+ + W + N DK L +++
Sbjct: 329 RLSIIAESIRDGL---ATWDNWKHVNCDK---------------------LTTIIESS-- 362
Query: 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404
L +LE Y+ + + L +F SA +P
Sbjct: 363 -----------LNVLEPAE--------YR-KMF-------DRLSVFPP------SAHIPT 389
Query: 405 YHKIIELLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDR----LHL 458
++ L+ ++ + + + K S I++ ++YL L + LH
Sbjct: 390 --ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 459 AFSEC--LEKCRPNRTIYGIYLES---------LKNAGNIEKAEEIFNHMHSD-----QT 502
+ + + K + + YL+ LKN + E+ F + D Q
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQK 506
Query: 503 IGVNTRSCNIILS------------AYLSSGDFVKAEKIYDLMC-LKKYE---------- 539
I ++ + N S Y+ D + ++ L K E
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 540 -IESAWMEKLDYVLSLNRKEVKK 561
+ A M + + + K+V++
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 44/309 (14%), Positives = 96/309 (31%), Gaps = 102/309 (33%)
Query: 495 NHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSL 554
+H H D G + ILS + FV + C +++ + +LS
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFED--AFVD-----NFDC---KDVQ----DMPKSILS- 47
Query: 555 NRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRF-----QFNEN---SRM 606
++E+ + + L LL K++ + +F + N S +
Sbjct: 48 -KEEIDHIIMSKDAVSGTLRLFWTLL--------SKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 607 HSV-----LRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTS 661
+ + +Y + + L+ + + K + + + L R +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK------L---------RQA 143
Query: 662 VGDILLKLK----VSSEGIA------LVFKTLKARSLDCRVKKKGRVFWIGFLGSNS--- 708
LL+L+ V +G+ + + + C K ++FW+ NS
Sbjct: 144 ----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPET 197
Query: 709 ------TLFWKLI------------EPYVLDELKEDL--LNEGSEYRK----LD----TQ 740
L +++ + ++ +L L + Y L +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 741 NIN-FD--C 746
N F+ C
Sbjct: 258 AWNAFNLSC 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 20/206 (9%), Positives = 65/206 (31%), Gaps = 5/206 (2%)
Query: 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL---L 359
L + + + QA ++ LL+ + C + A +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ET 418
+ + + M +A+ G F + + + +++ + + +Y ++ + + + +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 419 ELTESLMKEFVETGMKPLMPSY-INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477
E +++ + G+K + L+ + + + L P
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 478 LESLKNAGNIEKAEEIFNHMHSDQTI 503
L + ++ + + Q +
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 761 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.65 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 3c0w_A | 235 | Intron-encoded endonuclease I-SCEI; endonuclease, | 99.43 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.33 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.33 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.18 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.16 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.14 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.14 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.12 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.07 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.07 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.07 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.97 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.93 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.92 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.75 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.67 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.63 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.63 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.61 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.6 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.59 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.57 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.51 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.48 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.48 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.47 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.45 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.45 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.45 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.39 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.37 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.34 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.29 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.29 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.27 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.21 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.18 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.17 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.15 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.14 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.13 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.11 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.11 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.11 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.09 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.09 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.07 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.06 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.06 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.06 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.05 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.05 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.04 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.0 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.0 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.97 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.97 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.94 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.93 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.91 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.91 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.9 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.87 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.84 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.84 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.83 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.8 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.79 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.69 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.69 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.68 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.68 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.67 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.66 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.48 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.39 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.29 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.28 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.16 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.08 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.06 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.04 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.01 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.9 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.72 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.39 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.26 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.08 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.94 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.86 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.3 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.01 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.33 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 88.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 87.94 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.35 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 86.89 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 86.33 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 85.86 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 83.96 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.68 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 82.04 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.98 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.1 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=335.70 Aligned_cols=450 Identities=10% Similarity=-0.045 Sum_probs=331.8
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004324 113 RAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYM 190 (761)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 190 (761)
..++..+.+.+....+..+++.+.. ..|+..++..+ .|.+.|++++|..+|+.+.. .+++..+++.++.+|
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHH
Confidence 3556677788888888888776653 45777777666 88899999999999998864 366899999999999
Q ss_pred HhcCChhHHHHHHHH-HHHC--------------CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 004324 191 GKERKFAKCRDIFDD-IINQ--------------GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~-m~~~--------------g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 255 (761)
.++|++++|.++|++ ++.. |..++..+|+.++.+|. +.|++++|+++|++|.+. .|+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~---~p~~~ 234 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT---NLSNFDRAKECYKEALMV---DAKCY 234 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---Cchhh
Confidence 999999999999995 3332 23446899999999999 799999999999999985 35433
Q ss_pred H-HHHHHHHHHc--------------------------------CCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004324 256 L-HNSLFRALVS--------------------------------KPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (761)
Q Consensus 256 t-~~~ll~~~~~--------------------------------~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (761)
+ +..+...+.. .......|++++|.++|+++.+. .++..++..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 3 2222211100 11122346777888888777655 35555555554
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
..+.+.|++++|..+|++|.+.+. .+..+++.++.+|.+.|++++|.++++++.+... .+..+|+.++.+|.+.|+
T Consensus 313 --~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 313 --DTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTC
T ss_pred --HHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhcc
Confidence 677777778888888887776543 2566777778888888888888888887776543 357777778888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (761)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777642 2356778888888888888888888888877654 34667777788888888888888888888
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
+.+..+.+..+|+.++.+|.+.|++++|.++|++|.+. + ..|+ ..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ-SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc-cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77655567777888888888888888888888877664 3 4566 677888888888888888888888877753
Q ss_pred CCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHH
Q 004324 537 KYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYL 614 (761)
Q Consensus 537 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~ 614 (761)
+ |+ +..+|..+...|...|++++|.+.++ ++++|++...+..++++
T Consensus 546 ~----p~----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 546 S----TN----------------------------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp S----SC----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred C----CC----------------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 2 21 25667778888888888888888887 77888888888887776
Q ss_pred HH
Q 004324 615 YD 616 (761)
Q Consensus 615 ~~ 616 (761)
|.
T Consensus 594 ~~ 595 (597)
T 2xpi_A 594 LE 595 (597)
T ss_dssp TC
T ss_pred Hh
Confidence 64
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=335.67 Aligned_cols=444 Identities=10% Similarity=0.006 Sum_probs=376.4
Q ss_pred CcchhhhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004324 144 QEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (761)
Q Consensus 144 p~~~t~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~l 221 (761)
++...|..+ .+.+.|++++|..+|+.|... .|+..++..++.+|.+.|++++|..+|+.+... .++..+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 344444444 678999999999999999954 557789999999999999999999999998543 5699999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHH
Q 004324 222 IVAYLSAPVQGCLDEACSIYNRMIQLG--------------GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL 287 (761)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~--------------g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~ 287 (761)
+.+|. +.|++++|+++|+++.... |..++..+|+.+..++.+. |++++|..+|++|.
T Consensus 157 ~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 157 AFCLV---KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL------SNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHH---HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHH
T ss_pred HHHHH---HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 99999 7999999999999643221 2345689999999999986 69999999999998
Q ss_pred HcCCCcCHHHHHHHH------------------------------------HHHhhccCCCHHHHHHHHHHHHHcCCCCC
Q 004324 288 TSGLEIQKDIYSGLI------------------------------------WLHSYQDNIDKERISLLKKEMQQAGFEEG 331 (761)
Q Consensus 288 ~~~~~p~~~~~~~li------------------------------------~~~~~~~~g~~~~a~~l~~~m~~~g~~p~ 331 (761)
+.+.. +...+..+. .+..+.+.|++++|.++|++|.+. .++
T Consensus 228 ~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~ 304 (597)
T 2xpi_A 228 MVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKS 304 (597)
T ss_dssp HHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGC
T ss_pred HhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cch
Confidence 87643 223322221 135677889999999999998765 579
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
..+++.++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|++|.+. .+.+..+|+.++.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHH
Confidence 999999999999999999999999999987754 7788999999999999999999999999865 35578999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|.
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999854 3468899999999999999999999999999866778999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhh
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (761)
++|++|.+.. +.+..+|+.++..|.+.|++++|.++|++|.+. .|+ .+..|+.
T Consensus 462 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------------~~~~p~~ 514 (597)
T 2xpi_A 462 EYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL----VKK---------------------TQSNEKP 514 (597)
T ss_dssp HHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHH---------------------SCCCSGG
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----hhc---------------------cccchhh
Confidence 9999999874 557899999999999999999999999999863 111 0011111
Q ss_pred HHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhh
Q 004324 572 RENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHR 642 (761)
Q Consensus 572 ~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~ 642 (761)
...+|..+..+|...|++++|...++ +.+.|++...|..++.+|.+.|++++|.. .++++++.
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~l~~ 579 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT--------HLHESLAI 579 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH--------HHHHHHhc
Confidence 16789999999999999999999998 78899999999999999999999888876 36776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=292.81 Aligned_cols=205 Identities=14% Similarity=0.203 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------hH
Q 004324 315 RISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE---------FM 384 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~ 384 (761)
.+..+.+++.+.++.+.. .+++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666655443 35677777777777777777777777777777777777777777776654 57
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (761)
+|.++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred h-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 465 E-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 465 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
+ |+.||..||++||++|++.|++++|.++|++|.+.| +.|+..||++++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhcC
Confidence 7 888888888888888888888888888998888888 888888888888888763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-31 Score=291.16 Aligned_cols=216 Identities=11% Similarity=0.036 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhh
Q 004324 197 AKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYY 275 (761)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~-~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~ 275 (761)
..+..++.++.+++..+.. ..++.+|++|+ |.|++++|+++|++|.+. |+.||.+|||+||.+|++...
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~---k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~------ 76 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCS---KKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEA------ 76 (501)
T ss_dssp -----------------CHHHHHHHHHHHTT---TSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCC------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCc------
Confidence 4566777888888766544 46899999999 899999999999999998 899999999999999987521
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004324 276 LQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355 (761)
Q Consensus 276 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 355 (761)
. ......+..++|.++|++|...|+.||..||++||.+|++.|++++|.++|
T Consensus 77 ~----------------------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 77 A----------------------------TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128 (501)
T ss_dssp C----------------------------SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred h----------------------------hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 112344557888899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004324 356 LRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (761)
++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 129 ~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 004324 436 LMPSYINLTNMYLNL 450 (761)
Q Consensus 436 d~~t~~~li~~~~~~ 450 (761)
+..||+.|+..|+..
T Consensus 209 s~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 209 SKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-23 Score=225.18 Aligned_cols=359 Identities=13% Similarity=0.069 Sum_probs=237.1
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|+.+...|. +.|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~---~~g 81 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK---ERG 81 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---HHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH---HCC
Confidence 4557788888888888888774 5567777777788888888888888888777653 336778888888888 688
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCC
Q 004324 233 CLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (761)
++++|+..|+++.+. .|+ ..+|..+..++... |++++|...|+++.+.+... ...+.. ....+...|
T Consensus 82 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~-~~~~~~--l~~~~~~~g 149 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL---KPDFIDGYINLAAALVAA------GDMEGAVQAYVSALQYNPDL-YCVRSD--LGNLLKALG 149 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH------SCSSHHHHHHHHHHHHCTTC-THHHHH--HHHHHHTTS
T ss_pred CHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCc-HHHHHH--HHHHHHHcc
Confidence 888888888888764 354 34566666666654 47778888887777654321 122222 224555666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
++++|..+|+++.+.. .-+..+|..+...+.+.|++++|.+.|+++.+.++. +...|..+...+...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777766542 123566666667777777777777777776665533 45566666666777777777777776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH
Q 004324 392 EMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR 471 (761)
Q Consensus 392 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~ 471 (761)
+..... +-+..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+..+.+.
T Consensus 228 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 228 RALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 665542 2245666666666677777777777776666643 22355666666666666666666666666665555566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+|+.+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666666666666666542 34456666666666666666666666666653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-23 Score=222.34 Aligned_cols=375 Identities=11% Similarity=0.037 Sum_probs=312.9
Q ss_pred hhcCCccchhhHHHHHHhhhcccCCcchhhhhH---HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 004324 120 CKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV---HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196 (761)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 196 (761)
-..+..+.+...+..+.. ..|+....... .+...|+++.|..+++...+.. +.+..+|..+...|.+.|++
T Consensus 10 ~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCH
Confidence 355667777766655443 45766554433 6778999999999999999875 77899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhH
Q 004324 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYL 276 (761)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~ 276 (761)
++|...|+++.+... .+..+|..+..++. +.|++++|++.|+++.+. .|+.......+..+.... |++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~-----g~~ 151 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALV---AAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKAL-----GRL 151 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTT-----SCH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHc-----cCH
Confidence 999999999988532 24667999999999 799999999999999974 587776666666665555 499
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004324 277 QQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL 356 (761)
Q Consensus 277 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 356 (761)
++|...|+++.+.... +..++..+. ..+...|++++|...|+++.+... -+...+..+...+...|++++|...++
T Consensus 152 ~~A~~~~~~al~~~p~-~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 152 EEAKACYLKAIETQPN-FAVAWSNLG--CVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHH--HHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999887543 344555444 778899999999999999988642 257788999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004324 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (761)
Q Consensus 357 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 436 (761)
+..+..+. +..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+
T Consensus 228 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 304 (388)
T 1w3b_A 228 RALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 99887643 67899999999999999999999999998863 3357789999999999999999999999999864 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
..+++.+...|.+.|++++|...++++.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +-+...|..+...
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHhHHHH
Confidence 89999999999999999999999999998767789999999999999999999999999999863 3456778777777
Q ss_pred HHhCC
Q 004324 517 YLSSG 521 (761)
Q Consensus 517 ~~~~g 521 (761)
+...|
T Consensus 383 ~~~~~ 387 (388)
T 1w3b_A 383 LKEMQ 387 (388)
T ss_dssp HHHTC
T ss_pred HHHcc
Confidence 66655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-20 Score=207.59 Aligned_cols=409 Identities=10% Similarity=0.021 Sum_probs=317.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|...|+.+.+.. |+..++..+..+|.+.|++++|...|+++.+.+. .+..+|..+..+|. +.|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~---~~g 87 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE---GLG 87 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH---HTT
T ss_pred HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH---HHh
Confidence 5668899999999999999975 5899999999999999999999999999988653 36778999999999 799
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcC-------------------CC-
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-------------------LE- 292 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~-------------------~~- 292 (761)
++++|+..|+++.... .++......++..+... .....+.+.+..+...+ ..
T Consensus 88 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG--DFNDASIEPMLERNLNK------QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp CHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHH------HHHHHHTTC---------------------------CCC
T ss_pred hHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999862 34444444444444331 12222222221111100 00
Q ss_pred -----------------------cCHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHH-----cCCCC--------CHH
Q 004324 293 -----------------------IQKDIYSGLIWLHSYQ---DNIDKERISLLKKEMQQ-----AGFEE--------GKE 333 (761)
Q Consensus 293 -----------------------p~~~~~~~li~~~~~~---~~g~~~~a~~l~~~m~~-----~g~~p--------~~~ 333 (761)
|+. ....+.....+. +.|++++|..+|+++.. ..-.| +..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCH-HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcH-HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111 222222223222 48999999999999987 31122 356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
++..+...+...|++++|.+.++.+.+.... ..+|..+...|...|++++|...|+++.... +.+..+|..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 7788889999999999999999999988754 8889999999999999999999999998753 346778999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
..|++++|...++++.+.. +.+..++..+...|...|++++|...++.+.+..+.+..+|..+...|.+.|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999864 335678999999999999999999999999875566788999999999999999999999
Q ss_pred HHHhhhCCCCCCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCC
Q 004324 494 FNHMHSDQTIGVN----TRSCNIILSAYLS---SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLN 566 (761)
Q Consensus 494 ~~~m~~~g~~~p~----~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 566 (761)
|+++.....-.++ ..+|..+...|.. .|++++|.+.|+++.+. +|+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~----------------------- 447 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL----DPR----------------------- 447 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH----CTT-----------------------
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh----Ccc-----------------------
Confidence 9998775311122 3489999999999 99999999999999863 232
Q ss_pred CchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHH
Q 004324 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (761)
Q Consensus 567 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~ 613 (761)
+..+|..+...+...|+.++|...++ +.+.|++......+..
T Consensus 448 -----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 448 -----SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 15567778888899999999999998 8889998776655543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-19 Score=193.82 Aligned_cols=342 Identities=15% Similarity=0.077 Sum_probs=237.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004324 163 GFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYN 242 (761)
Q Consensus 163 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~ 242 (761)
+...+..+.... +.+...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..+|. +.|++++|+..|+
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~---~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL---AMGKSKAALPDLT 84 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH---HCCCHHHHHHHHH
Confidence 444445555443 5577788888888888888888888888887753 236778888888888 6888888888888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHhhccCCCHHHHHHH
Q 004324 243 RMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK---DIYSGLIWLHSYQDNIDKERISLL 319 (761)
Q Consensus 243 ~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~g~~~~a~~l 319 (761)
++.+.. ..+...+..+...+... |++++|...|+++.+.+.. +. ..+..+.. .+
T Consensus 85 ~al~~~--p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~--~~------------ 141 (450)
T 2y4t_A 85 KVIQLK--MDFTAARLQRGHLLLKQ------GKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIK--SD------------ 141 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHH--HH------------
T ss_pred HHHhcC--CCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH--HH------------
Confidence 888752 23455666666666664 5888888888888765532 11 22222211 00
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 004324 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 320 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (761)
....+..+...+.+.|++++|.+.|+.+.+.... +..++..+..+|.+.|++++|.++|+++.+.. +
T Consensus 142 -----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 208 (450)
T 2y4t_A 142 -----------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-N 208 (450)
T ss_dssp -----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-C
T ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 0112233445567778888888888877776533 56777778888888888888888888776642 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL------------TNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.+..+|..+...|...|++++|...|+++.+.. +.+...+..+ ...|.+.|++++|...|+.+.+..
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 467778888888888888888888888887643 2233344333 788999999999999999998732
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc-Ch
Q 004324 468 RPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI-ES 542 (761)
Q Consensus 468 ~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~ 542 (761)
+.+ ..+|..+...|.+.|++++|...++++.... +.+..+|..+..+|...|++++|...|+++.+. .| ++
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 363 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQ 363 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchH
Confidence 233 4588899999999999999999999998763 447899999999999999999999999999852 23 34
Q ss_pred HHHHHHHHH
Q 004324 543 AWMEKLDYV 551 (761)
Q Consensus 543 ~~~~~~~~~ 551 (761)
..+..+..+
T Consensus 364 ~~~~~l~~~ 372 (450)
T 2y4t_A 364 QIREGLEKA 372 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-19 Score=192.01 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=244.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCc
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p 293 (761)
+...|..+...+. +.|++++|+.+|+++.+. ...+..++..+..++... |++++|...|+++.+.+.
T Consensus 25 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p-- 91 (450)
T 2y4t_A 25 DVEKHLELGKKLL---AAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAM------GKSKAALPDLTKVIQLKM-- 91 (450)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCC--
Confidence 4566777777777 577777777777777764 233455555555555543 356666666555554332
Q ss_pred CHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHH
Q 004324 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT---PAF 370 (761)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~ 370 (761)
.+..++..+..+|.+.|++++|.+.|+.+.+..+. +. ..+
T Consensus 92 ------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 134 (450)
T 2y4t_A 92 ------------------------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQ 134 (450)
T ss_dssp ------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHH
T ss_pred ------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 13455556666666666666666666666655422 22 344
Q ss_pred HHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004324 371 VYK------------MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMP 438 (761)
Q Consensus 371 ~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 438 (761)
..+ ...|.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 433 455889999999999999998763 4478889999999999999999999999999864 45689
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY------------LESLKNAGNIEKAEEIFNHMHSDQTIGVN 506 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~~p~ 506 (761)
++..+..+|...|++++|...|+.+.+..+.+...+..+ ...|.+.|++++|..+|+++.... |+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~ 289 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PS 289 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Cc
Confidence 999999999999999999999999987556667777666 899999999999999999999854 55
Q ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhh
Q 004324 507 -----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLG 581 (761)
Q Consensus 507 -----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~ 581 (761)
...|..+...+.+.|++++|+..++++.+. +|+ +..+|..+..
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~p~----------------------------~~~~~~~l~~ 337 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM----EPD----------------------------NVNALKDRAE 337 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTT----------------------------CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----Ccc----------------------------cHHHHHHHHH
Confidence 458899999999999999999999999852 332 2667888999
Q ss_pred hhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhh
Q 004324 582 GLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (761)
Q Consensus 582 ~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~ 620 (761)
+|...|++++|...++ +.+.|++...+..++.+....++
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999 88999999999988876665544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-19 Score=197.99 Aligned_cols=408 Identities=11% Similarity=0.012 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259 (761)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 259 (761)
...+..+...+.+.|++++|...|+++.+.. ||..+|..+..+|. +.|++++|+..|+++.+.. +.+...+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYV---SVGDLKKVVEMSTKALELK--PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHH---HHhhHHHHHHHHHHHhccC--hHHHHHHHH
Confidence 4456677788999999999999999999875 79999999999999 7999999999999999852 234567777
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc-------------
Q 004324 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------------- 326 (761)
Q Consensus 260 ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------------- 326 (761)
+..++... |++++|...|+++...+...+......+. ..........+.+.+..+...
T Consensus 79 l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 79 RASANEGL------GKFADAMFDLSVLSLNGDFNDASIEPMLE---RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HHHHHHHT------TCHHHHHHHHHHHHHSSSCCGGGTHHHHH---HHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHH------hhHHHHHHHHHHHHhcCCCccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 77777775 59999999999998887533222211111 000100011111111111000
Q ss_pred ------CCC------------------------CC-HHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCCC---
Q 004324 327 ------GFE------------------------EG-KEVLLSVLRVCAK---EGDVEDAEKTWLRLLE-----SDNG--- 364 (761)
Q Consensus 327 ------g~~------------------------p~-~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~-----~g~~--- 364 (761)
... |+ ...+......+.. .|++++|..+|+++.+ ..-.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 000 11 3333344444443 8999999999999988 4111
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 365 -----IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 365 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
.+..+|..+...|...|++++|...|+++.+.. |+..+|..+...|...|++++|...++.+.+.. +.+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 135678888999999999999999999998864 448889999999999999999999999998864 346778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
+..+...|...|++++|...|+.+.+..+.+..+|..+...|...|++++|..+|+++.+.. +.+..+|..+...|.+
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHH
Confidence 99999999999999999999999988666678899999999999999999999999998863 4467899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhh---hhhhhHHHHHH
Q 004324 520 SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCI---ESDEKRKRHMI 596 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~ 596 (761)
.|++++|...|+++.+. .|.. .... ....+|..+...+.. .|+++.|...+
T Consensus 385 ~~~~~~A~~~~~~a~~~----~~~~--------------------~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIEL----ENKL--------------------DGIY--VGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp TTCHHHHHHHHHHHHHH----HHTS--------------------SSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----hhcc--------------------chHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 99999999999999852 1210 0000 002367778888888 99999999999
Q ss_pred H--hhccccchhhHHHHHHHHHhhhhccCCCCccccCCcccchhhhhh
Q 004324 597 R--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVIPKLIHR 642 (761)
Q Consensus 597 ~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~~~m~~~ 642 (761)
+ +.+.|++...+..++.+|.+.|++++|.. .+.+.++.
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~--------~~~~a~~~ 478 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT--------LFEESADL 478 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH--------HHHHHHHh
Confidence 8 88899999999999999999999888876 35665554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-17 Score=182.40 Aligned_cols=399 Identities=10% Similarity=0.050 Sum_probs=275.3
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g 232 (761)
.+.+.|++++|...|+.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.+. .+..+|..+...+. +.|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~---~~g 107 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE---SLG 107 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHT
T ss_pred HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH---HcC
Confidence 4567888888888888888875 66788888888888888888888888888877642 26777888888887 688
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHc------CCCcCHHHHHHHH----
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS------GLEIQKDIYSGLI---- 302 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li---- 302 (761)
++++|+..|+.+ . ..|+.... .+..+... +...+|..+++.+... ...|+........
T Consensus 108 ~~~~A~~~~~~~-~---~~~~~~~~--~~~~~~~~------~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 108 NFTDAMFDLSVL-S---LNGDFDGA--SIEPMLER------NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp CHHHHHHHHHHH-C----------------CHHHH------HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHH-h---cCCCCChH--HHHHHHHH------HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 888888888633 2 23443221 12222222 3566777777777442 1122222221111
Q ss_pred ------------------------HHHhhcc--------CCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHH
Q 004324 303 ------------------------WLHSYQD--------NIDKERISLLKKEMQQAGFEEG--------KEVLLSVLRVC 342 (761)
Q Consensus 303 ------------------------~~~~~~~--------~g~~~~a~~l~~~m~~~g~~p~--------~~~~~~ll~~~ 342 (761)
....+.. .+++++|..+|+++.+. .|+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 0011111 13677888888887764 333 23466666777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
...|++++|.+.++.+.+..+ +..+|..+...|...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 888888888888888887653 47778888888888888888888888887653 335777888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-
Q 004324 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ- 501 (761)
Q Consensus 423 ~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 501 (761)
..++++.+.. +.+..++..+...|...|++++|...++++.+..+.+..+|..+...|...|++++|.+.|+++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 8888888754 23457788888888888888888888888887556677788888888888888888888888876532
Q ss_pred ---CCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCc
Q 004324 502 ---TIGVNTRSCNIILSAYLSS----------GDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLS 568 (761)
Q Consensus 502 ---~~~p~~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (761)
........+..+...|.+. |++++|...|++..+. +|+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~p~------------------------- 460 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL----DPR------------------------- 460 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH----CTT-------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh----CCC-------------------------
Confidence 0111223344445666666 8888888888888752 232
Q ss_pred hhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhh
Q 004324 569 SEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (761)
Q Consensus 569 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~ 607 (761)
+..+|..+...+...|+.++|...++ +.+.|.....
T Consensus 461 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 461 ---SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 25567778888899999999999998 7888876654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-17 Score=184.15 Aligned_cols=397 Identities=12% Similarity=0.055 Sum_probs=296.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004324 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259 (761)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 259 (761)
...+..+...+.+.|++++|...|+++.+... .+..+|..+..+|. +.|++++|++.|+++.+.. +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYI---STGDLEKVIEFTTKALEIK--PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC--CchHHHHHH
Confidence 45677788889999999999999999988643 37889999999999 7999999999999999852 234556666
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc------CCCCCHH
Q 004324 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEEGKE 333 (761)
Q Consensus 260 ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p~~~ 333 (761)
+...+... |++++|...|+.+ .....+....+ ..+...+....|...++++... ...|+..
T Consensus 99 la~~~~~~------g~~~~A~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 99 RASANESL------GNFTDAMFDLSVL-SLNGDFDGASI------EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHH-C-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred HHHHHHHc------CCHHHHHHHHHHH-hcCCCCChHHH------HHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 66666654 5999999999633 32222111111 2223334457788888777442 1233333
Q ss_pred HHHH--------------------------HHHHHH------------hcCChHHHHHHHHHHHhCCCCCC------HHH
Q 004324 334 VLLS--------------------------VLRVCA------------KEGDVEDAEKTWLRLLESDNGIP------TPA 369 (761)
Q Consensus 334 ~~~~--------------------------ll~~~~------------~~g~~~~a~~~~~~m~~~g~~~~------~~~ 369 (761)
.... +..++. ..|++++|..+++.+.+..+... ..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence 2221 111211 22588999999999998764311 235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
|..+...|...|++++|...|++..+. .|+..+|..+...|...|++++|...++++.+.. +.+..++..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 667778889999999999999999886 4668889999999999999999999999999864 3468889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
.|++++|...|+++.+..+.+..+|..+...|...|++++|.++|+++.+.. +.+...|..+...|...|++++|.+.
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999987556677899999999999999999999999999874 45678999999999999999999999
Q ss_pred HHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhh----------hhhhHHHHHHH--
Q 004324 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE----------SDEKRKRHMIR-- 597 (761)
Q Consensus 530 ~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~-- 597 (761)
|+++.+.. |.. ..... ....+..+...+... |++++|...++
T Consensus 401 ~~~a~~~~----~~~--------------------~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 401 YDIAKRLE----EVQ--------------------EKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp HHHHHHHH----HHC--------------------SSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC----Ccc--------------------hhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 99998632 221 00000 012223333445566 99999999998
Q ss_pred hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 598 FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 598 ~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+.+.|++...+..++.+|.+.|++++|..
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 88899999999999999999999888876
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-20 Score=209.08 Aligned_cols=162 Identities=10% Similarity=0.134 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLE---SDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
-..|||++|++||+.|++++|.++|++|.+ .|+.||+++||+||++||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHH
Q 004324 408 IIELLCKAEE-TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYGIYLES 480 (761)
Q Consensus 408 li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~~li~~ 480 (761)
||.++|+.|+ .++|.++|++|.+.|+.||.++|++++.++.+.+-++... ++..++.|+ ..+.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr----kv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH----KVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG----GGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH----HhCcccCCCCCCcccccchHHHHHH
Confidence 9999999998 4789999999999999999999999998877764444333 332244443 5566777888
Q ss_pred HHhcC---------CHHHHHHHHHH
Q 004324 481 LKNAG---------NIEKAEEIFNH 496 (761)
Q Consensus 481 ~~~~g---------~~~~A~~l~~~ 496 (761)
|.+.+ ..++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 88766 24566666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-20 Score=204.93 Aligned_cols=150 Identities=6% Similarity=0.099 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQ---ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 442 (761)
-..+||+||++||++|++++|.++|++|. .+|+.||++|||+||.|||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35789999999999999999999998876 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC------HHHHHHHH
Q 004324 443 LTNMYLNLGM-HDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN------TRSCNIIL 514 (761)
Q Consensus 443 li~~~~~~g~-~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~------~~t~~~li 514 (761)
||+++|+.|+ .++|.++|++|.+ |+.||..+|++++.++.+.+-+ +..+++.. + +.|+ ..|...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv~P-~-f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKVKP-T-FSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGGCC-C-CCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHhCc-c-cCCCCCCcccccchHHHH
Confidence 9999999998 5889999999998 9999999999999888775444 44444422 2 4443 55666677
Q ss_pred HHHHhCC
Q 004324 515 SAYLSSG 521 (761)
Q Consensus 515 ~~~~~~g 521 (761)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777666
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-15 Score=156.73 Aligned_cols=319 Identities=15% Similarity=0.092 Sum_probs=253.1
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL 335 (761)
Q Consensus 256 t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 335 (761)
.+..+-..+... |++++|...|+++.+.... +..++..+ +..+...|++++|...|+++.+.. .-+...+
T Consensus 5 ~~~~~~~~~~~~------g~~~~A~~~~~~~l~~~p~-~~~~~~~~--a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 5 KHLELGKKLLAA------GQLADALSQFHAAVDGDPD-NYIAYYRR--ATVFLAMGKSKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTT-CHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHhhCcc-cHHHHHHH--HHHHHHccCHHHHHHHHHHHHHhC-CCcchHH
Confidence 344444455554 5999999999999886643 34444443 477888899999999999998763 2267888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 004324 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYK------------MEAYAKIGEFMKSLEIFREMQERLGSAS 401 (761)
Q Consensus 336 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (761)
..+..+|...|++++|.+.++.+.+..+. .+...+..+ ...+...|++++|.++|+++.+.. +.+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 99999999999999999999999887641 134445444 588899999999999999998763 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH----
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY---- 477 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l---- 477 (761)
...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+...+..+.+..++..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 7889999999999999999999999999864 45688999999999999999999999999987555566655433
Q ss_pred --------HHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHH
Q 004324 478 --------LESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (761)
Q Consensus 478 --------i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 545 (761)
...+.+.|++++|...|+++.... +.+. ..|..+...|.+.|++++|.+.+++..+. +|+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~-- 304 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM----EPD-- 304 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----Ccc--
Confidence 667899999999999999998864 2233 23556778999999999999999999863 332
Q ss_pred HHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhh
Q 004324 546 EKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (761)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~ 620 (761)
+..+|..+...+...|+.++|...++ +.+.|++......+..++...++
T Consensus 305 --------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 305 --------------------------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 15567778888889999999999998 88999998888888887766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-14 Score=152.63 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=105.7
Q ss_pred hhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004324 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 306 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 385 (761)
.+...|++++|..+++++.+.. ..+..++..+..++...|++++|.+.++.+.+..+. +..+|..+...|...|++++
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555432 123445555555555555555555555555554322 44455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
|...|++..+.. +.+...+..+... . .......+...+.+.|++++|...++.+.+
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555554431 1112211111000 0 000111224456666666666666666665
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 466 KCRPNR----TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 466 ~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+.+. ..|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 263 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222233 224445666777777777777777766653 33566777777777777777777777777764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.6e-16 Score=159.88 Aligned_cols=280 Identities=8% Similarity=-0.064 Sum_probs=237.2
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-Ch
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG-EF 383 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~ 383 (761)
..+...|++++|..+|+++.+... .+..++..++.++...|++++|..+++++.+..+. +...|..+...|...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhH
Confidence 566677999999999999987642 24556667888899999999999999999987643 6788999999999999 99
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (761)
++|.+.|++..+.. +.+...|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+++.
T Consensus 108 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 108 EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998753 3357789999999999999999999999999864 334567778999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-------IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+..+.+..++..+...|...|++++|...|++...... .+.+..+|..+...|.+.|++++|...|++..+.
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 987778899999999999999999999999999876310 1335679999999999999999999999999863
Q ss_pred CCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHH
Q 004324 537 KYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYL 614 (761)
Q Consensus 537 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~ 614 (761)
.|+ +..+|..+...+...|+.++|...++ +.+.|++...+..++..
T Consensus 266 ----~~~----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 266 ----IPQ----------------------------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp ----STT----------------------------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred ----Ccc----------------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 222 25667778888999999999999999 88999999888999888
Q ss_pred HH-hhhh
Q 004324 615 YD-QYHE 620 (761)
Q Consensus 615 ~~-~~g~ 620 (761)
+. ..|+
T Consensus 314 ~~~~~g~ 320 (330)
T 3hym_B 314 IEMYIGD 320 (330)
T ss_dssp HHTTTTC
T ss_pred HHHHhCc
Confidence 84 4443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-13 Score=154.69 Aligned_cols=410 Identities=9% Similarity=0.040 Sum_probs=291.0
Q ss_pred hccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 004324 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (761)
Q Consensus 155 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~ 234 (761)
.+.|+++.|..+|+.+.+. +|.+...|..++..+.+.|++++|..+|++.... .|++..|...+.-... ..|+.
T Consensus 23 ~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~--~~~~~ 96 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRE--TKGKL 96 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHH--HTTTS
T ss_pred HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH--Hccch
Confidence 4678999999999999987 5778999999999999999999999999999886 4788888888764322 35666
Q ss_pred HHHHH----HHHHHHhcCCCCCC-HHHHHHHHHHHHcCCC---CCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-
Q 004324 235 DEACS----IYNRMIQLGGYQPR-PSLHNSLFRALVSKPG---GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH- 305 (761)
Q Consensus 235 ~~A~~----l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~g---~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~- 305 (761)
++|.+ +|++....-|..|+ ...|...+....+..+ ....|+++.|..+|++.++........++.......
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 66654 78777654355554 4566666554432100 011379999999999998732111122332221100
Q ss_pred ----------hhccCCCHHHHHHHHHHHHH------cC---CCCC--------HHHHHHHHHHHHhc----CCh----HH
Q 004324 306 ----------SYQDNIDKERISLLKKEMQQ------AG---FEEG--------KEVLLSVLRVCAKE----GDV----ED 350 (761)
Q Consensus 306 ----------~~~~~g~~~~a~~l~~~m~~------~g---~~p~--------~~~~~~ll~~~~~~----g~~----~~ 350 (761)
.....+++..|..++.++.. .. +.|+ ...|...+...... ++. ..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 00123456677777765321 11 2343 24555554433222 232 36
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEFM-------KSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 351 a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
|..+|++.....+. +...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 77889988886543 67889888888876 69987 89999999876323446888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 004324 417 ETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKAEEI 493 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l 493 (761)
++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+...+..+.+...|...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 999999999999984 454 35899999999999999999999999987433344444333322 3468999999999
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHH
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 573 (761)
|++..+.. +-+...|..++..+.+.|+.++|..+|++..... ..+|. ...
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~~~~~---------------------------~~~ 463 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPE---------------------------KSG 463 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-CSCGG---------------------------GCH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-CCCHH---------------------------HHH
Confidence 99988863 4468899999999999999999999999998642 11222 125
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHH--hhcccc
Q 004324 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNEN 603 (761)
Q Consensus 574 ~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~ 603 (761)
.+|...+.....+|+.+.+..+.+ .+..|+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 678888888888899999988877 566664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-16 Score=163.03 Aligned_cols=290 Identities=9% Similarity=-0.051 Sum_probs=224.6
Q ss_pred cCCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 004324 309 DNIDKERISL-LKKEMQQAGF-EE--GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (761)
Q Consensus 309 ~~g~~~~a~~-l~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 384 (761)
..|++++|.. .|++...... .| +...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3466788877 7665443211 11 3456778889999999999999999999988654 6788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHh
Q 004324 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN---------------LTNMYLN 449 (761)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~---------------li~~~~~ 449 (761)
+|.+.|+++.+.. +.+..+|..+...|...|++++|...++++.+..-. +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999998764 447888999999999999999999999999985421 1112211 2334448
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
.|++++|...|+++.+..+. +..+|..+...|.+.|++++|...|+++.... +.+..+|..+...|.+.|++++|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999873333 78999999999999999999999999998864 456889999999999999999999
Q ss_pred HHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccc-
Q 004324 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENS- 604 (761)
Q Consensus 528 ~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~- 604 (761)
..|+++.+. +|+ +..+|..+...+...|++++|...++ +.+.|++
T Consensus 272 ~~~~~al~~----~~~----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 272 AAYRRALEL----QPG----------------------------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHHH----CTT----------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHh----CCC----------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 999999862 332 25667788888999999999999988 7777776
Q ss_pred ----------hhhHHHHHHHHHhhhhccCCCCccccCCcccc
Q 004324 605 ----------RMHSVLRRYLYDQYHEWLHPSFKFWPKGRLVI 636 (761)
Q Consensus 605 ----------~~~~~~l~~~~~~~g~~~~a~~~~~~~a~~~~ 636 (761)
...+..++.+|...|++++|.. ...++...|
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~~ 360 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGA-ADARDLSTL 360 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHH-HHTTCHHHH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHH-hHHHHHHHH
Confidence 6789999999999999999875 233443333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-14 Score=151.41 Aligned_cols=287 Identities=12% Similarity=0.028 Sum_probs=164.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHH
Q 004324 217 TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296 (761)
Q Consensus 217 ~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~ 296 (761)
.+..+...+. ..|++++|+++|+++.+.. ..+...+..+...+... |++++|..+++++.+.... +..
T Consensus 24 ~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~~~-~~~ 91 (330)
T 3hym_B 24 VVVSLAERHY---YNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVEL------NKANELFYLSHKLVDLYPS-NPV 91 (330)
T ss_dssp THHHHHHHHH---HTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTT-STH
T ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHh------hhHHHHHHHHHHHHHhCcC-CHH
Confidence 3444444444 3455555555555555431 11222222233333322 3555555555555443321 112
Q ss_pred HHHHHHHHHhhccCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNI-DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375 (761)
Q Consensus 297 ~~~~li~~~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 375 (761)
.+..+ +..+...| ++++|...|++..... ..+..++..+..++...|++++|.+.++.+.+.... +...+..+..
T Consensus 92 ~~~~l--~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 92 SWFAV--GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp HHHHH--HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred HHHHH--HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 22222 23444455 5666666666655432 113455666667777777777777777777665533 3455566777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG--------MKPLMPSYINLTNMY 447 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~pd~~t~~~li~~~ 447 (761)
.|...|++++|.+.|++..+.. +.+...|..+...+...|++++|...+++..+.. ...+..++..+...|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 7777777777777777766542 3355667777777777777777777777766531 122345667777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH-HhCCC
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY-LSSGD 522 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~-~~~g~ 522 (761)
.+.|++++|...|++..+..+.+..+|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCc
Confidence 777777777777777766444566677777777777777777777777776653 33556666666666 34444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-12 Score=144.92 Aligned_cols=344 Identities=15% Similarity=0.080 Sum_probs=232.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-CCC
Q 004324 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQ 231 (761)
Q Consensus 157 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~-~~~ 231 (761)
.++++.|...|+...+.| +...+..|-..|.. .+++++|.++|++..+.| +...+..|-..|... +..
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 677788888888777776 55666777777777 777888888888777764 556666666666610 005
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhcc--
Q 004324 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD-- 309 (761)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-- 309 (761)
+++++|+..|++..+. | +...+..+-..+....| ..++.++|...|++..+.| +...+..+. ..+..
T Consensus 129 ~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg--~~y~~g~ 197 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDG--VTRDYVMAREWYSKAAEQG---NVWSCNQLG--YMYSRGL 197 (490)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTT---CHHHHHHHH--HHHHHTS
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCC---CHHHHHHHH--HHHhcCC
Confidence 6788888888877765 3 33444444444443111 1137778888887777765 233333333 22332
Q ss_pred --CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 004324 310 --NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK---- 379 (761)
Q Consensus 310 --~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 379 (761)
.++.++|...|++..+.| +...+..+...|.. .+++++|.+.|+...+.| +...+..+...|..
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTS
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCC
Confidence 677788888887777654 55666667777765 677788888887777765 45666667677776
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA-----EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG--- 451 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g--- 451 (761)
.++.++|.+.|++..+.| +...+..+-..|... ++.++|...+++..+.| +...+..|...|.+.|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 777788888887776654 455666666677666 77888888887777765 4566677777776655
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDF 523 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~ 523 (761)
+.++|.++|++..+. .+...+..|...|.. .+++++|.++|++..+.| +...+..|...|.+ .++.
T Consensus 346 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCCCCCH
Confidence 667777777777652 456777777777777 677888888888777766 56677777777777 7778
Q ss_pred HHHHHHHHHHHHc
Q 004324 524 VKAEKIYDLMCLK 536 (761)
Q Consensus 524 ~~A~~~~~~m~~~ 536 (761)
++|..+|++..+.
T Consensus 420 ~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 420 VQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 8888888777753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-12 Score=139.55 Aligned_cols=354 Identities=13% Similarity=0.025 Sum_probs=284.5
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC----CC
Q 004324 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV----QG 232 (761)
Q Consensus 161 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~----~g 232 (761)
..+...+....+.| +...+..|-..|.. .+++++|...|++..+.| +...+..|-..|. . .+
T Consensus 24 ~~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~---~g~g~~~ 93 (490)
T 2xm6_A 24 NVNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYM---NGEGVPQ 93 (490)
T ss_dssp -CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH---HTSSSCC
T ss_pred hHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---cCCCCCC
Confidence 33466666666766 67777788888887 899999999999998875 6777888877777 5 78
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh--hccC
Q 004324 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS--YQDN 310 (761)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~ 310 (761)
+.++|++.|++..+. | +...+..+-..+....| ..+++++|...|++..+.|. ...+..+..++. ....
T Consensus 94 ~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNG--VKVDKAESVKWFRLAAEQGR---DSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCC
Confidence 999999999999885 3 44455555555554211 11489999999999988873 344444432222 2237
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 004324 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGE 382 (761)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~ 382 (761)
++.++|...|++..+.| +...+..+...|.. .++.++|.+.|+...+.| +...+..+...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998875 68888889999988 899999999999999887 57788888888887 899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-----GMH 453 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-----g~~ 453 (761)
.++|..+|++..+.| +...+..+-..|.. .++.++|...|++..+.| +...+..|...|... ++.
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998764 56777778778887 899999999999998875 567888888999887 899
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 004324 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKA 526 (761)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A 526 (761)
++|...|.+..+. .+...+..|...|...| ++++|.++|++..+.| +...+..|-..|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998872 45678888999998877 7899999999999987 78899999999998 8999999
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHhh
Q 004324 527 EKIYDLMCLKKYEIESAWMEKLDYVLSL 554 (761)
Q Consensus 527 ~~~~~~m~~~g~~~~~~~~~~~~~~~~l 554 (761)
.++|++..+.| ++..+..++.++..
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 99999999876 46665666665544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-16 Score=162.08 Aligned_cols=283 Identities=12% Similarity=0.103 Sum_probs=140.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCC
Q 004324 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG 270 (761)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~ 270 (761)
-+.|++++|.++++++.. ..+|..|..++. +.|++++|++.|.+. +|..+|..++.++...
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l---~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~--- 74 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQL---QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTS--- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHH---HcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhC---
Confidence 367889999999999943 348999999999 799999999999642 5667888888887764
Q ss_pred CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 004324 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (761)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 350 (761)
|++++|...+....+. .+++.+.+.++ .+|.+.|+++++.++++ .|+..+|..+...|...|++++
T Consensus 75 ---g~~EeAi~yl~~ark~--~~~~~i~~~Li--~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 75 ---GNWEELVKYLQMARKK--ARESYVETELI--FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred ---CCHHHHHHHHHHHHHh--CccchhHHHHH--HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 6999999977766653 34466677777 88889999999988885 3788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 351 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
|...|..+ ..|..+++++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999976 36999999999999999999999988 2789999999999999999999655443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCC---
Q 004324 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--GNIEKAEEIFNHMHSDQTIGV--- 505 (761)
Q Consensus 431 ~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~~p--- 505 (761)
+.....-...++..|.+.|++++|..+++..+..-+.....|+-|.-+|++- +++.+.+++|..-. + ++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--n-i~k~~~ 277 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--N-IPKVLR 277 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--C-HHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--c-CcHHHH
Confidence 2233334557999999999999999999999874477788999998888886 35666666665322 2 444
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 506 ---NTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 506 ---~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
+...|.-+.-.|.+.++++.|...
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 456799999999999999988763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-15 Score=155.92 Aligned_cols=290 Identities=11% Similarity=-0.025 Sum_probs=208.8
Q ss_pred CCCHHHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhh
Q 004324 231 QGCLDEACS-IYNRMIQLGGYQP--RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (761)
Q Consensus 231 ~g~~~~A~~-l~~~m~~~~g~~p--~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (761)
.|++++|++ .|++......-.| +...+..+-..+... |++++|...|+++.+.... +..++..+ +..+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~A~~~~~~al~~~p~-~~~~~~~l--~~~~ 108 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE------GDLPNAVLLFEAAVQQDPK-HMEAWQYL--GTTQ 108 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT------TCHHHHHHHHHHHHHSCTT-CHHHHHHH--HHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCC-CHHHHHHH--HHHH
Confidence 466677776 6665443211111 223344444445443 4777777777777766532 33333333 3666
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------
Q 004324 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY--------------- 372 (761)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--------------- 372 (761)
...|++++|...|+++.... ..+..++..+..+|...|++++|.+.++.+.+..... ...+..
T Consensus 109 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 109 AENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------C
T ss_pred HHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHH
Confidence 77778888888888777654 2367788888888888888888888888888765432 222211
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g 451 (761)
.+..+...|++++|...|+++.+..... +..+|..+...|.+.|++++|...++++.+.. +.+..++..+...|.+.|
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcC
Confidence 2344448899999999999998763221 47889999999999999999999999998864 345789999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----------HHHHHHHHHHHHhC
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----------TRSCNIILSAYLSS 520 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-----------~~t~~~li~~~~~~ 520 (761)
++++|...|+++.+..+.+..+|..+...|.+.|++++|...|+++.... +.+ ..+|..+..+|.+.
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHHHHHHHHh
Confidence 99999999999987556788999999999999999999999999987743 222 68999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004324 521 GDFVKAEKIYDLMC 534 (761)
Q Consensus 521 g~~~~A~~~~~~m~ 534 (761)
|++++|..++++-.
T Consensus 344 g~~~~A~~~~~~~l 357 (368)
T 1fch_A 344 GQSDAYGAADARDL 357 (368)
T ss_dssp TCGGGHHHHHTTCH
T ss_pred CChHhHHHhHHHHH
Confidence 99999999887443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-14 Score=152.73 Aligned_cols=272 Identities=12% Similarity=-0.011 Sum_probs=215.8
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
++..+..+.+.|++++|..+|+++.... ..+..++..+..+|.+.|++++|.+.|+++.+..+. +..+|..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence 3444577788899999999999998864 336889999999999999999999999999987643 68899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSAS-----------VPAYHKIIELLCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMY 447 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~ 447 (761)
.|++++|...|+++.+.. |+ ...+..+...+...|++++|..+++++.+..-. ++..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 999999999999997642 22 223445678899999999999999999986422 2688999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
...|++++|...|+++.+..+.+..+|+.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999998667789999999999999999999999999999864 446889999999999999999999
Q ss_pred HHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 528 ~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
..|+++.+. .|..... .....+..+..+|..|..++...|+.+.+..+.+
T Consensus 302 ~~~~~al~~----~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSL----QRKSRNQ----------------QQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHH----HHCC----------------------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHh----CcccCCC----------------cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999862 2211000 0000011136788999999999999999888765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-15 Score=157.23 Aligned_cols=258 Identities=9% Similarity=-0.049 Sum_probs=212.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..+...+.+.|++++|.++|+.+.+..+. +..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455888899999999999999999999988654 68899999999999999999999999998763 346889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPL-----------MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIY 477 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd-----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~l 477 (761)
.|...|++++|...++++.+.. |+ ...+..+...|.+.|++++|...|+++.+..+. +..+|..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998743 22 233445688899999999999999999874333 79999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhh
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK 557 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~ 557 (761)
...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|+..|+++.+. +|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~-------------- 279 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI----QPG-------------- 279 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--------------
Confidence 999999999999999999999874 557899999999999999999999999999863 333
Q ss_pred hhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhcccc------------chhhHHHHHHHHHhhhhccC
Q 004324 558 EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNEN------------SRMHSVLRRYLYDQYHEWLH 623 (761)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~------------~~~~~~~l~~~~~~~g~~~~ 623 (761)
+..+|..+...+...|+.++|...++ +.+.|+ +...+..++.++...|+.+.
T Consensus 280 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 280 --------------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp --------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred --------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 15678888888999999999999998 666666 24567888999999998876
Q ss_pred CCC
Q 004324 624 PSF 626 (761)
Q Consensus 624 a~~ 626 (761)
+..
T Consensus 346 a~~ 348 (365)
T 4eqf_A 346 FQA 348 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-13 Score=148.80 Aligned_cols=410 Identities=12% Similarity=0.086 Sum_probs=278.2
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 004324 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ 246 (761)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~ 246 (761)
++..++.. +.+..+|..++. +.+.|++++|+.+|+++.+.. +-+...|...+..+. +.|++++|..+|++...
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~---~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEI---KAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Confidence 44555553 668899999998 478999999999999999863 236778999999998 78999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCCCCchhhHHH----HHHHHHHHHHc-CCCcC-HHHHHHHHHHHh-------hccCCCH
Q 004324 247 LGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQ----AEFIFHNLLTS-GLEIQ-KDIYSGLIWLHS-------YQDNIDK 313 (761)
Q Consensus 247 ~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~----A~~~~~~m~~~-~~~p~-~~~~~~li~~~~-------~~~~g~~ 313 (761)
. .|+...|...+.......| +.+. +..+|+..+.. |..|+ ...+..++.... +...|+.
T Consensus 75 ~---~p~~~lw~~~~~~~~~~~~-----~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 75 K---VLHIDLWKCYLSYVRETKG-----KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp T---CCCHHHHHHHHHHHHHHTT-----TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred c---CCChHHHHHHHHHHHHHcc-----chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 4 4887777666653332222 3444 44577776543 54443 344444332221 1125779
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------hCC---CCCC-----
Q 004324 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVC-------------AKEGDVEDAEKTWLRLL------ESD---NGIP----- 366 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~~~----- 366 (761)
++|..+|++.......+....|....... .+.+++..|..++.++. +.. +.|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 99999999988732111123343322211 13456777877776632 221 2333
Q ss_pred ---HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HH
Q 004324 367 ---TPAFVYKMEAYAKI----GEF----MKSLEIFREMQERLGSASVPAYHKIIELLCK-------AEETE-------LT 421 (761)
Q Consensus 367 ---~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A 421 (761)
...|...+..--.. ++. .+|..+|++.... .+-+...|......+.+ .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 24566555433322 232 3778889888765 34467788888888775 68877 89
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 422 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..++++..+.-.+-+...|..++..+.+.|++++|..+|+++.+..+.+. ..|..++..+.+.|++++|.++|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988632233588899999999999999999999999987433343 58999999999999999999999999886
Q ss_pred CCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHH
Q 004324 501 QTIGVNTRSCNIILSA-YLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (761)
Q Consensus 501 g~~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 579 (761)
. +.+...|...... +...|+.++|.++|++.++. .|+ +..+|..+
T Consensus 386 ~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~----~p~----------------------------~~~~~~~~ 431 (530)
T 2ooe_A 386 A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK----YGD----------------------------IPEYVLAY 431 (530)
T ss_dssp T--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH----HTT----------------------------CHHHHHHH
T ss_pred c--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----CCC----------------------------CHHHHHHH
Confidence 3 2233333332222 34689999999999998852 222 25678888
Q ss_pred hhhhhhhhhhhHHHHHHH--hhccccchh----hHHHHHHHHHhhhhccCCCC
Q 004324 580 LGGLCIESDEKRKRHMIR--FQFNENSRM----HSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 580 l~~~~~~g~~~~a~~~~~--~~l~p~~~~----~~~~l~~~~~~~g~~~~a~~ 626 (761)
+......|+.++|+.+++ +...|.++. .+...+......|+.+.+..
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888999999999998 555444432 45555666666776666553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=160.81 Aligned_cols=280 Identities=11% Similarity=0.050 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|++++|.++++++. ++.+++.+ +.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~L--a~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQL--AKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHH--HHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 48999999999993 23455544 4999999999999999965 3588899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (761)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 3457889999999999999999999885 378889999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 434 ~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. + ++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~--~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----V--HADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----T--CHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----h--CHhhHHHH
Confidence 37999999999999999999999988 389999999999999999999976665533 2 33335579
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHH
Q 004324 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (761)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 593 (761)
+..|.+.|++++|+.+++..+. .++..+. ..+--.++.+--+-+++.+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~----le~ah~~--------------------------~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALG----LERAHMG--------------------------MFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT----STTCCHH--------------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhC----CcHHHHH--------------------------HHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999998873 3333211 122222333333344555555
Q ss_pred HHHH--hhccc-----cchhhHHHHHHHHHhhhhccCCCC
Q 004324 594 HMIR--FQFNE-----NSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 594 ~~~~--~~l~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
+.+. +.+.| ++...+.-++-+|...++|+.|..
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 5554 44444 455566666777777777766654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=149.61 Aligned_cols=229 Identities=12% Similarity=-0.040 Sum_probs=144.4
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
+..+..+...|++++|..+|+++.+... .+..++..+..++...|++++|.+.++++.+.... +..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHc
Confidence 3334556667777777777777766532 25666677777777777777777777777766432 566677777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKI--------------IE-LLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
|++++|.+.|+++.+... .+...+..+ .. .+...|++++|..+++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 777777777777765421 122222222 11 2555666677777777666643 235566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
.|.+.|++++|...+.++.+..+.+..+|..+...|...|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHH
Confidence 67777777777777766665445556666666777777777777777777666643 3345666666666777777777
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
|.+.|+++.+
T Consensus 259 A~~~~~~a~~ 268 (327)
T 3cv0_A 259 AAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-14 Score=145.84 Aligned_cols=258 Identities=6% Similarity=-0.062 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
.+..+...+...|++++|.++|+++.+..+. +..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4455666777788888888888887776543 56777777888888888888888888877652 336677777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINL--------------TN-MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
..|++++|.+.++++.+..- .+...+..+ .. .+...|++++|...++++.+..+.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 88888888888888776431 111222222 22 366777888888888887765556777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhh-
Q 004324 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK- 557 (761)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~- 557 (761)
..|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+.. ..++..+..++.++...++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 88888888888888888877753 3456778888888888888888888888877532 2233433333332221110
Q ss_pred -----hhcccccCCCc---------hhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 558 -----EVKKPVSLNLS---------SEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 558 -----~~~~~~~~~~~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
.++........ ...+..+|..+...+...|+.+.|..+++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000000000 00035667777777777788887777765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-12 Score=145.88 Aligned_cols=325 Identities=10% Similarity=0.039 Sum_probs=255.9
Q ss_pred ccCCcchhhhhHHHhccCChhHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004324 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHW-YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (761)
Q Consensus 141 ~~~p~~~t~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~ 219 (761)
...|+.++..+-++...|.+.+|.++++.+.-.+. +.-+....+.|+....|. +..+..++.++.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 46788898888888899999999999999995542 335667788888777777 556777776666533 2 22
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHH
Q 004324 220 ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (761)
Q Consensus 220 ~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (761)
-+-..+. ..|.+++|..+|++... .....+.++... |++++|.++.++.. ++.++.
T Consensus 1054 eIA~Iai---~lglyEEAf~IYkKa~~------~~~A~~VLie~i---------~nldrAiE~Aervn------~p~vWs 1109 (1630)
T 1xi4_A 1054 DIANIAI---SNELFEEAFAIFRKFDV------NTSAVQVLIEHI---------GNLDRAYEFAERCN------EPAVWS 1109 (1630)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHcCC------HHHHHHHHHHHH---------hhHHHHHHHHHhcC------CHHHHH
Confidence 2444555 68999999999998521 122234454432 48999999988762 245555
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
.+. .++...|++++|...|.+. -|...|..++.+|.+.|++++|.+.+....+... +....+.++.+|++
T Consensus 1110 qLA--KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1110 QLA--KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 1179 (1630)
T ss_pred HHH--HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHh
Confidence 554 8899999999999999653 3788899999999999999999999988777653 33344469999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|++.|+++.|.+.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 99998644332 2 357778888999999999999999999984 4899999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+++. .+..+|..+-.+|...|++..|........ .+...+..++..|.+.|.+++|+.+++..+
T Consensus 1244 arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1244 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9876 577999999999999999999998876532 256677799999999999999999997665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-14 Score=144.49 Aligned_cols=264 Identities=8% Similarity=-0.024 Sum_probs=155.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 386 (761)
..|++..|+..++.... ..|+. .....+..+|...|+++.|...++. . -.|+..++..+...|.+.|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 45566666666554322 23332 2334556677777777776664432 1 234555666666777777777777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 387 LEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 387 ~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
++.++++...+..| +...+..+...+.+.|++++|.+.+++ ..+..++..++..|.+.|++++|.+.|+.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776655434 344445555667777777777777665 34566677777777777777777777777765
Q ss_pred CCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCh
Q 004324 466 KCRPNRT-I--YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (761)
Q Consensus 466 ~~~p~~~-~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 542 (761)
.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|+..|++..+. +|
T Consensus 159 ~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~----~p 231 (291)
T 3mkr_A 159 QD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK----DS 231 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred hC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC
Confidence 22 3321 1 122333344456777777777777766 3556677777777777777777777777776642 22
Q ss_pred HHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhH-HHHHHH--hhccccchhhHHHHHHHHHhhh
Q 004324 543 AWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKR-KRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (761)
Q Consensus 543 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~--~~l~p~~~~~~~~l~~~~~~~g 619 (761)
+ +..+|..+...+...|+.++ +.+.++ +.+.|+++. +.++..+.+
T Consensus 232 ~----------------------------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~ 279 (291)
T 3mkr_A 232 G----------------------------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKEN 279 (291)
T ss_dssp T----------------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHH
T ss_pred C----------------------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHH
Confidence 2 13445555556666666654 445554 666777654 334455555
Q ss_pred hccC
Q 004324 620 EWLH 623 (761)
Q Consensus 620 ~~~~ 623 (761)
.+++
T Consensus 280 ~fd~ 283 (291)
T 3mkr_A 280 DFDR 283 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=140.16 Aligned_cols=246 Identities=10% Similarity=0.043 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
|++..|...++.... ..|+...-.......++...|+.+.|+..++. .-.|+..++..+...+...++.++|.+
T Consensus 13 g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 13 GSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 589999988876543 33444333334445788899999999987654 245677888999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 354 TWLRLLESDNGI-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 354 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
.++++...+..| +...+..+...|.+.|++++|++.|++ +.+...+..+...|.+.|++++|.+.++.+.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999877545 456677788999999999999999987 4688899999999999999999999999999864
Q ss_pred CCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 004324 433 MKPLMPSY---INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (761)
Q Consensus 433 ~~pd~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t 509 (761)
|+.... ..++..+...|++++|..+|+++.+..+.+...|+.+..+|.+.|++++|...|++..... +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 553211 2233445556899999999999998778899999999999999999999999999998874 457889
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHH
Q 004324 510 CNIILSAYLSSGDFVK-AEKIYDLMCL 535 (761)
Q Consensus 510 ~~~li~~~~~~g~~~~-A~~~~~~m~~ 535 (761)
+..++..+...|+.++ +.++++++.+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999976 6789999985
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-12 Score=138.56 Aligned_cols=354 Identities=10% Similarity=-0.025 Sum_probs=239.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CC--CCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHH
Q 004324 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL----GG--YQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286 (761)
Q Consensus 214 d~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~----~g--~~p-~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m 286 (761)
....||.|-..+. ..|++++|++.|++..+. .+ ..| ...+|+.+-..+... |++++|...+++.
T Consensus 50 ~a~~yn~Lg~~~~---~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~------g~~~~A~~~~~ka 120 (472)
T 4g1t_A 50 KATMCNLLAYLKH---LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM------GRLSDVQIYVDKV 120 (472)
T ss_dssp CCHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc------CChHHHHHHHHHH
Confidence 3456777777776 578888888888776431 01 133 346777777777765 6999999999887
Q ss_pred HHcC------CC-cCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---HHhcCChHHHHHHH
Q 004324 287 LTSG------LE-IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRV---CAKEGDVEDAEKTW 355 (761)
Q Consensus 287 ~~~~------~~-p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~---~~~~g~~~~a~~~~ 355 (761)
.+.. .. ....++............+++++|...|++..+. .|+ ...+..+..+ +...++.++|.+.+
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 5421 01 1234555444334455667899999999998875 444 4444444444 45668888999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 356 LRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 356 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
++..+..+. +..++..+...+.. .|+.++|.+++++..... +.+..++..+...|...|++++|...+++..+.
T Consensus 199 ~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 199 RQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 988887643 56666666655555 467889999999887753 346778999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 432 GMKPLMPSYINLTNMYLNL-------------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 432 g~~pd~~t~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
. +-+..++..+...|... +..+.|...|....+..+.+..+|..+...|...|++++|.+
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 4 33466777776666432 235677777777776445667788899999999999999999
Q ss_pred HHHHhhhCCCCCCCHH----HHHHHHH-HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 493 IFNHMHSDQTIGVNTR----SCNIILS-AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 493 l~~~m~~~g~~~p~~~----t~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
.|++..+.. |+.. .+..+.. .+.+.|++++|+..|++..+ +.|+.
T Consensus 356 ~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~----------------------- 405 (472)
T 4g1t_A 356 YFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKS----------------------- 405 (472)
T ss_dssp HHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCC-----------------------
T ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccc-----------------------
Confidence 999988764 3332 2222222 34578999999999998875 23321
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..+ .+..+.+..+++ +..+|.++..+..++.+|...|++++|..
T Consensus 406 ------~~~---------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 406 ------REK---------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp ------HHH---------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred ------HHH---------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 001 112223334444 67789999999999999999999999986
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-11 Score=135.32 Aligned_cols=380 Identities=13% Similarity=0.040 Sum_probs=241.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 004324 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQ-----G---RVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248 (761)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g---~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~ 248 (761)
......||.|...+...|++++|++.|++-.+. + -....++|+.+-..|. ..|++++|+..|++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~---~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY---HMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHh
Confidence 344678999999999999999999999876531 1 1224678999999998 6999999999998876420
Q ss_pred -----CCCCC-HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHH-HHhhccCCCHHHHHHHHH
Q 004324 249 -----GYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDNIDKERISLLKK 321 (761)
Q Consensus 249 -----g~~p~-~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~g~~~~a~~l~~ 321 (761)
...++ ..+++..-.++..... +++++|...|++.++.... +...+..+.. ...+...++.++|++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGG----NQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11222 2344433223322111 4899999999999887643 3333333332 233455677788888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 004324 322 EMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (761)
Q Consensus 322 ~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (761)
+..+... .+..++..+...+.. .|++++|.+.+++..+..+. +..++..+...|.+.|++++|...|++..+..
T Consensus 200 ~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 200 QAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 8776532 245566666555554 46788999999998887654 67889999999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 398 GSASVPAYHKIIELLCKA-------------------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 398 ~~p~~~t~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+-+..+|..+...|... +..++|...++...+.. +.+..++..+...|...|++++|..
T Consensus 278 -p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 278 -PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence 33556666665555322 23567888888877754 3345678889999999999999999
Q ss_pred HHHHHHhCCCCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 459 AFSECLEKCRPNRT---IYGIYLE-SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 459 ~~~~m~~~~~p~~~---~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|++..+...++.. .+..+.. .+...|+.++|+..|++..+. .|+...+...+ ..+.+++++..
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~l 423 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHHH
Confidence 99998863222221 2333332 345679999999999999885 46644332222 23344444444
Q ss_pred HcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHH
Q 004324 535 LKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRR 612 (761)
Q Consensus 535 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~ 612 (761)
+ .+|. +..+|..|...+...|+.++|...++ +++.|.++.+...++
T Consensus 424 ~----~~p~----------------------------~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 424 S----KNGA----------------------------DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp H----HCC-----------------------------CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred H----hCCC----------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2 2332 26678888888999999999999998 777787776655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=129.40 Aligned_cols=216 Identities=13% Similarity=0.083 Sum_probs=115.6
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHHH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--P----TPAFVYKMEAYA 378 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~----~~~~~~li~~~~ 378 (761)
..+...|++++|..+|++..+.. .+..++..+..+|...|++++|.+.++...+..... + ..+|..+...|.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 44555556666666666555554 455555555666666666666666665555432211 1 345555555666
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+.|++++|...|++.... .|+. ..+.+.|++++|...++.+.... +.+...+..+...|...|++++|..
T Consensus 91 ~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666666666555543 2332 23344455555555555555532 1123445555555555555555555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 459 AFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|++..+..+.+..+|..+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|.+.|++..
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555554334455555555555555555555555555555542 2334555555555555555555555555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-12 Score=126.63 Aligned_cols=211 Identities=9% Similarity=-0.008 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG--FEEG----KEVLLSVLRVCAKEGD 347 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~~~~~ll~~~~~~g~ 347 (761)
|++++|...|++..+.. .+..++..+. ..+...|++++|...+++..... ..|+ ..++..+..+|.+.|+
T Consensus 19 ~~~~~A~~~~~~a~~~~--~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH--KDITYLNNRA--AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp TCHHHHHHHHHHHHHHS--CCTHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhh--ccHHHHHHHH--HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 45555555555555444 3333333332 44445555555555555544321 1111 2444555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 348 VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKE 427 (761)
Q Consensus 348 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 427 (761)
+++|.+.|+.+.+.. |+ ...+.+.|++++|...++++.... +.+...|..+...+...|++++|...+++
T Consensus 95 ~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 555555555555432 22 123444455555555555554431 11233444455555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 428 FVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 428 m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
..+.. +.+..++..+...|.+.|++++|...|+...+..+.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 165 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 165 MIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55432 223445555555555555555555555555443334455555555555555555555555555444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-11 Score=122.39 Aligned_cols=201 Identities=14% Similarity=0.058 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...+...|++++|.+.++++.+.... +..+|..+...|.+.|++++|.+.|+++.+.. +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 456777888888999999999999988887543 67888889999999999999999999988763 3367788888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
|...|++++|.++++++.+.+..| +...+..+...|...|++++|...|.++.+..+.+..++..+...|...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988744455 4667888888999999999999999998875566788999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..+|+++.+.. +.+...+..+...|.+.|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998864 567788888999999999999999999999863
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-11 Score=121.01 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
.++...+..+...+.+.|++++|...|+...+..+. +...|..+...|.+.|++++|...|++..+.. +-+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 346667788888899999999999999999887754 67888889999999999999999999988763 3356788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 409 IELLCKA-----------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 409 i~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
...+... |++++|...+++..+.. +-+...+..+..+|...|++++|...|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 8889888 99999999999998853 2357788899999999999999999999998833 889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999998864 4567888899999999999999999988764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=124.41 Aligned_cols=257 Identities=8% Similarity=0.025 Sum_probs=196.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIEL 411 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~ 411 (761)
.+......+...|++++|.+.|+.+.+..+. +...+..+...|...|++++|...|++..+..-.|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455667788899999999999998887643 455788888899999999999999999887432222 3458888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
+...|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+..+.+..+|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998854 3356789999999999999999999999998766677888888883444456999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCc
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGD---FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLS 568 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (761)
+.|++..+.. +.+...+..+...+...|+ +++|...|++..+.. ...|+. .
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~-----------------------~ 216 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC-APGGAK-----------------------Y 216 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH-GGGGGG-----------------------G
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH-hccccc-----------------------c
Confidence 9999999874 4457888888888888888 888999999887521 011110 0
Q ss_pred hhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 569 SEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 569 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
...-..+|..+...+...|+.++|...++ +.++|+++...-.+..+....
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 00013567778888889999999999998 899999988777666555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-11 Score=116.68 Aligned_cols=201 Identities=13% Similarity=0.061 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+..++..+...+...|++++|.+.++.+.+.... +...|..+...|...|++++|.+.|++..+.. +.+..+|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456777788888888888888888888876543 57788888888888999999999998887753 336778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 411 LLCKA-EETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
.|... |++++|...++++.+.+..|+ ..++..+...|...|++++|...|.++.+..+.+...+..+...|.+.|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 999999999988888433343 5678888888999999999999999888755667888999999999999999
Q ss_pred HHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQTIG-VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+|.++|+++.... + .+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999988763 4 4777888888888899999999999998875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-12 Score=126.94 Aligned_cols=220 Identities=15% Similarity=0.069 Sum_probs=121.7
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEE---GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 383 (761)
....|++++|+..|+++.+..... +..++..+..+|...|++++|.+.|+++.+..+. +..+|..+...|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 345566777777777766653211 2445666666666777777777777766665432 456666666666667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (761)
++|.+.|++..+.. +.+..+|..+...|.+.|++++|...++++.+. .|+.......+..+...|++++|...+...
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77777666666542 224555666666666666666666666666653 233333333333344445555555555555
Q ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
....+++...+. ++..+...++.++|.+.+++..... |+ ..+|..+...|.+.|++++|...|++..
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN---TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc---ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 443333333333 4444444555555555555554432 11 3445555555555555555555555555
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-11 Score=120.03 Aligned_cols=208 Identities=6% Similarity=-0.025 Sum_probs=178.8
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 376 (761)
...++..+..+...|++++|...|+++.... ..+..++..+..+|...|++++|.+.++++.+.... +...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3444455577888999999999999998764 336788999999999999999999999999987643 67889999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~ 455 (761)
|.+.|++++|.++|+++...+..| +...|..+...|...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743445 45678889999999999999999999999864 3468889999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
|...++.+.+..+.+...+..+...|.+.|++++|.++++++.+.. |+...+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY---PGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCCHHH
Confidence 9999999988667888999999999999999999999999998864 554443
|
| >3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-14 Score=133.57 Aligned_cols=103 Identities=30% Similarity=0.516 Sum_probs=94.6
Q ss_pred ccccCCcccchh-hhhhccCccceeeeeeeCCccc------CCCcEEEEecc-CHHHHHHHHHHHh-hcCCceeEeecCc
Q 004324 627 KFWPKGRLVIPK-LIHRWLTPRALAYWFMYGGHRT------SVGDILLKLKV-SSEGIALVFKTLK-ARSLDCRVKKKGR 697 (761)
Q Consensus 627 ~~~~~a~~~~~~-m~~~g~~Pd~~ty~~li~g~~~------~~~~~~~~~~g-~~~e~~~l~~~m~-~~gl~~~~~~~~~ 697 (761)
.|+.++.++++. .+++.++|-+++||+|.||+.. .++.+..+|++ +.+|+..|.+.+. .+||+|++.++++
T Consensus 115 ~FY~~~~K~IP~~~I~~~LTP~aLA~W~MDDGs~~~~~~~~~~~gi~L~T~sFt~~ev~~L~~~L~~kf~L~~~i~~~~~ 194 (235)
T 3c0w_A 115 LFIVNNKKTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKN 194 (235)
T ss_dssp TTBSSSSBCCCTTHHHHHCCHHHHHHHHHHHEEESCCSTTCCCCCEEECCTTSCHHHHHHHHHHHHHHHCCCEEEEEETT
T ss_pred hheeCCEEECCHHHHHHhcCHHHHHheEECCCccccccccCCCCcEEEEeCCCCHHHHHHHHHHHHHhcCeEEEEEecCC
Confidence 577889999999 9999999999999999999973 45677777778 9999999999996 6699999999999
Q ss_pred EEEEEEeCCCHHHHHHhhccccchhhhhcccC
Q 004324 698 VFWIGFLGSNSTLFWKLIEPYVLDELKEDLLN 729 (761)
Q Consensus 698 ~~~i~i~~~~~~~~~~li~~~~~~~m~~~~~~ 729 (761)
+|+|+|++++...|+++|.||++|+|+||++.
T Consensus 195 ~y~Iyi~~~s~~~f~~lI~PYi~psM~YKl~~ 226 (235)
T 3c0w_A 195 KPIIYIDSMSYLIFYNLIKPYLIPQMMYKLPN 226 (235)
T ss_dssp EEEEEECGGGHHHHHHHHGGGCCGGGGGGCC-
T ss_pred EEEEEEeHHHHHHHHHHhhhhccHhHHhhcCC
Confidence 99999999999999999999999999999976
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-10 Score=129.94 Aligned_cols=363 Identities=10% Similarity=0.061 Sum_probs=231.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-CCCC
Q 004324 179 DFALATKLADYMGKERKFAKCRDIFDDIINQ----GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG-YQPR 253 (761)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g-~~p~ 253 (761)
|...|+.+++- +-+-=+.+.++.... ...|+.+ ...+.+|. ..|.+.+|++++++..-... +.-+
T Consensus 952 d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeV--s~~vKaf~---~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 952 DPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEV--SVTVKAFM---TADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred CHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHh--HHHHHHHH---hCCCHHHHHHHHHHHHcCCCccccc
Confidence 77777776621 112333455543332 2345544 45666777 57888889888888874311 1123
Q ss_pred HHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHH
Q 004324 254 PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE 333 (761)
Q Consensus 254 ~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 333 (761)
...-+.++.+..+. +..+......+..... .++ .+..+...|.+++|..+|++.. -...
T Consensus 1022 ~~LqnlLi~tAIka-------D~~Rv~eyI~kLd~~d-~~e--------IA~Iai~lglyEEAf~IYkKa~-----~~~~ 1080 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-------DRTRVMEYINRLDNYD-APD--------IANIAISNELFEEAFAIFRKFD-----VNTS 1080 (1630)
T ss_pred HHHHHHHHHHHHHh-------ChhhHHHHHHHhhhcc-HHH--------HHHHHHhCCCHHHHHHHHHHcC-----CHHH
Confidence 34555565555554 3444444444443111 111 1244556788888888888742 1222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (761)
Q Consensus 334 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (761)
..+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+- -|...|.-++.+|.
T Consensus 1081 A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A 1081 AVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN 1145 (1630)
T ss_pred HHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH
Confidence 2333332 6778888888877552 3577888888888888888888888553 36777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+.|++++|.+.+...++.. ++....+.++.+|++.+++++...+. + .++...|..+.+.|...|++++|..+
T Consensus 1146 ~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1146 TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888888888777644 33333445888888888877543332 1 45667777788888888888888888
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHH------hhhhhhhcccccCCC
Q 004324 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL------SLNRKEVKKPVSLNL 567 (761)
Q Consensus 494 ~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~ 567 (761)
|... ..|..+...|.+.|++++|.+.+++.. ++.++.....+. .+++.... ....
T Consensus 1218 Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl---~Iiv 1278 (1630)
T 1xi4_A 1218 YNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGL---HIVV 1278 (1630)
T ss_pred HHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHH---hhhc
Confidence 8774 268888888888888888888888763 344433322221 12211110 0000
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~ 618 (761)
++-.+..++.-|...|.+++|...++ ++++|.+...+.-++.+|++.
T Consensus 1279 ----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1279 ----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 13345577778899999999999999 888999888888888888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-11 Score=124.51 Aligned_cols=248 Identities=11% Similarity=-0.025 Sum_probs=194.3
Q ss_pred chhhHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 004324 272 SKYYLQQAEFIFHNLLTSGLEIQ-KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (761)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 350 (761)
..|++++|...|+++.+.....+ .....+...+..+...|++++|...|++...... .+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 45899999999999998753222 3344455556888999999999999999988642 368899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 351 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
|.+.|+++.+..+. +..+|..+...|.+.|++++|...|+++.+. .|+...+...+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999987643 5788999999999999999999999999875 35555555566666778999999999988887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 004324 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR----PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN 506 (761)
Q Consensus 431 ~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~ 506 (761)
.. .++...+ .++..+...+..++|...+....+..+ .+..+|..+...|.+.|++++|...|++..... |+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~ 247 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN---VH 247 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---ch
Confidence 53 3344444 477778888899999999998875211 125789999999999999999999999999864 53
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 333355677888888888776
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=121.30 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
...+|..+...+...|++++|...|+++.+.... +...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777777888889999999999888876543 67788888888999999999999999887763 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
.|...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...++++.+..+.+...+..+...|.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999988864 346778888889999999999999999998875567888999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+.|+++.... +.+..+|..+...|.+.|++++|.+.|+++.+
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999988864 45688899999999999999999999999986
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-12 Score=123.92 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
....|..+...+.+.|++++|...|+++.+. .+.+...|..+...|...|++++|...++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4567788888999999999999999999875 33468889999999999999999999999999864 346888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
.|...|++++|.+.++++.+..+.+..+|..+...|.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988667788999999999999999999999999998874 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhcccc
Q 004324 526 AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNEN 603 (761)
Q Consensus 526 A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~ 603 (761)
|.++|+++.+. .|. +..+|..+...+...|+.++|...++ +.+.|+
T Consensus 178 A~~~~~~~~~~----~~~----------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTEQ----DPG----------------------------HADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHH----CTT----------------------------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHh----Ccc----------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999863 222 14567778888899999999999998 888999
Q ss_pred chhhHHHHHHHHHh
Q 004324 604 SRMHSVLRRYLYDQ 617 (761)
Q Consensus 604 ~~~~~~~l~~~~~~ 617 (761)
+...+..+..+...
T Consensus 226 ~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 226 HMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHTC----
T ss_pred hHHHHHHHHHHHhh
Confidence 88776665554433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-10 Score=113.90 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYHK 407 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (761)
..++..+...|...|++++|.+.|++..+.+ +..++..+...|.. .|++++|.+.|++..+.+ +..++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444445555555555555555555555532 34455555555555 555555555555555543 4455555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 408 IIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 408 li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+. .+...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--NDGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 5555555 555555555555555543 44555555555555 55555665555555541 14445555555
Q ss_pred HHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHH
Q 004324 480 SLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCL 535 (761)
Q Consensus 480 ~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~ 535 (761)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 5555 556666666666555554 44555555555555 5566666666655554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-10 Score=112.96 Aligned_cols=210 Identities=10% Similarity=0.009 Sum_probs=177.1
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 376 (761)
...+...+..+...|++++|...|+++.+.. ..+..++..+...|...|++++|.+.++.+.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 3334445577888999999999999998764 335788999999999999999999999999887643 67889999999
Q ss_pred HHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 377 YAKI-GEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD 454 (761)
Q Consensus 377 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 454 (761)
|... |++++|...|+++.+.+..|+ ...|..+...+...|++++|...++++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999988433343 5778899999999999999999999999864 335888999999999999999
Q ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 455 RLHLAFSECLEKCR-PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 455 ~a~~~~~~m~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
+|...++.+.+..+ .+...+..+...+...|+.++|..+++.+.... |+......
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF---PYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 99999999987545 788889999999999999999999999998753 55444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-10 Score=112.45 Aligned_cols=216 Identities=6% Similarity=-0.019 Sum_probs=193.2
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 379 (761)
...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|..
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhC
Confidence 356677889999999999998843 56788889999999 999999999999999987 67889999999999
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 004324 380 ----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-- 449 (761)
Q Consensus 380 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-- 449 (761)
.+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..++..+...|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 999999999999998875 78889999999999 999999999999999976 67788889999998
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----
Q 004324 450 --LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---- 519 (761)
Q Consensus 450 --~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~---- 519 (761)
.+++++|...|++..+. .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.+
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSS
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCc
Confidence 89999999999998863 367889999999999 999999999999999987 47788888999998
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 004324 520 SGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g 537 (761)
.+++++|.+.|++..+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999999999754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-11 Score=125.38 Aligned_cols=249 Identities=9% Similarity=0.026 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE-FMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
...|..+..++.+.|++++|.+.++++++..+. +..+|+.+...|.+.|+ +++|+..|++..+.. +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456777888889999999999999999988754 68899999999999997 999999999998863 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCCHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN-AGNIEK 489 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~g~~~~ 489 (761)
++...|++++|+..|+++++.. .-+..+|..+..++.+.|++++|...|+++++..+.+...|+.+...|.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999864 34688999999999999999999999999998667789999999999999 666577
Q ss_pred H-----HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccc
Q 004324 490 A-----EEIFNHMHSDQTIGVNTRSCNIILSAYLSSG--DFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP 562 (761)
Q Consensus 490 A-----~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 562 (761)
| ++.|++..... +-+...|+.+...+.+.| ++++|++.+.++ + .+|+.
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~----~~p~~------------------ 308 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q----PSHSS------------------ 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T----TTCCC------------------
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c----cCCCC------------------
Confidence 7 58899988864 446789999999999988 689999999887 2 23321
Q ss_pred ccCCCchhhHHhHHHHHhhhhhhhh---------hhhHHHHHHH-h--hccccchhhHHHHHHHHHhh
Q 004324 563 VSLNLSSEQRENLIGLLLGGLCIES---------DEKRKRHMIR-F--QFNENSRMHSVLRRYLYDQY 618 (761)
Q Consensus 563 ~~~~~~~~~~~~~~~~ll~~~~~~g---------~~~~a~~~~~-~--~l~p~~~~~~~~l~~~~~~~ 618 (761)
..++..|...+...| ..++|..+++ + +++|....+|..++..+...
T Consensus 309 ----------~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 309 ----------PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 455556666666653 3588888888 4 78999998998888877653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-11 Score=118.49 Aligned_cols=190 Identities=9% Similarity=-0.081 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...|++..+..+.+...|..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34445555555555555555555555555432 22345555555555555555555555555554334455566666666
Q ss_pred HHhc-----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHH
Q 004324 481 LKNA-----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (761)
Q Consensus 481 ~~~~-----------g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 549 (761)
|.+. |++++|...|++..+.. +-+...|..+...|...|++++|+..|++..+.. .+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-------- 150 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT-------- 150 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--------
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc--------
Confidence 6666 77777777777776653 2345667777777777777777777777776533 12
Q ss_pred HHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 550 YVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..+|..+...+...|+.++|...++ +.+.|++...+..++.+|...|++++|..
T Consensus 151 -----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 151 -----------------------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred -----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 3345555566667777777777776 66777777777777777777777777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-11 Score=128.54 Aligned_cols=301 Identities=12% Similarity=-0.010 Sum_probs=222.1
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHH
Q 004324 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPA 369 (761)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~ 369 (761)
..+..+..+...|++++|...|++....... + ..++..+...|...|++++|...+++..+. +..| ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344557788899999999999999886322 3 357788889999999999999999886553 2111 2457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 004324 370 FVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELTESL 424 (761)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A~~l 424 (761)
+..+...|...|++++|...|++..+... .++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78889999999999999999998754310 012 3478888899999999 9999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 004324 425 MKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEI 493 (761)
Q Consensus 425 ~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l 493 (761)
+.+..+. +-.| ...++..+...|...|++++|...+++..+ .-.++ ..+|..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887652 2111 145788889999999999999999999875 11222 34888999999999999999999
Q ss_pred HHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCch
Q 004324 494 FNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSS 569 (761)
Q Consensus 494 ~~~m~~~g~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 569 (761)
+++......-.++ ..++..+...|...|++++|...+++..+.. +.. ..+
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~----------------------~~~ 303 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA----QEL----------------------NDR 303 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHT----------------------TCH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH----Hhc----------------------CCc
Confidence 9987653100012 5688899999999999999999999987521 110 000
Q ss_pred hhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhc------cccchhhHHHHHHHHHhhhhccCCCC
Q 004324 570 EQRENLIGLLLGGLCIESDEKRKRHMIR--FQF------NENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 570 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l------~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.....++..+...+...|+.++|...++ +.+ .+.....+..++.+|...|+...+..
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 0125567777788889999999998887 333 34445677889999999998766554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-10 Score=115.17 Aligned_cols=229 Identities=12% Similarity=0.056 Sum_probs=187.0
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcC
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--PTPAFVYKMEAYAKIG 381 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g 381 (761)
+..+...|++++|+..|++..+... .+..++..+..+|...|++++|.+.++.+.+....+ ...+|..+...|.+.|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3667788999999999999987632 234578888899999999999999999999844222 2345889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004324 382 EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFS 461 (761)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~ 461 (761)
++++|.+.|++..+.. +.+..+|..+...|...|++++|...+++..+.. +.+..++..+...+...+++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 3366789999999999999999999999988762 3456777777734444569999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 462 ECLEKCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVN------TRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p~------~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
++.+..+.+...+..+...+...|+ +++|...|++..+...-.|+ ..+|..+...|.+.|++++|.+.|++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998666678899999999999998 88899999887764211233 25788899999999999999999999
Q ss_pred HHH
Q 004324 533 MCL 535 (761)
Q Consensus 533 m~~ 535 (761)
..+
T Consensus 247 al~ 249 (272)
T 3u4t_A 247 ILA 249 (272)
T ss_dssp HHH
T ss_pred HHh
Confidence 996
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-10 Score=118.30 Aligned_cols=225 Identities=9% Similarity=0.023 Sum_probs=192.3
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGD-VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
...+...|++++|+..+++.....- -+..+|+.+..++.+.|+ +++|.+.|+++.+..+. +...|+.+..+|.+.|+
T Consensus 104 g~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 104 RAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccC
Confidence 3566778999999999999988632 257788999999999997 99999999999998765 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-LGMHDRL----- 456 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~-~g~~~~a----- 456 (761)
+++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.. .-+...|+.+..+|.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999999998863 3378899999999999999999999999999965 3368899999999999 6665777
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC---------CHHH
Q 004324 457 HLAFSECLEKCRPNRTIYGIYLESLKNAG--NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG---------DFVK 525 (761)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g---------~~~~ 525 (761)
...|++.++..+-+...|+.+...|.+.| ++++|.+.+.++ +. -+.+...+..+...|.+.| ..++
T Consensus 260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 58888888756778899999999999988 689999999998 43 3456788999999998874 3589
Q ss_pred HHHHHHHH-HH
Q 004324 526 AEKIYDLM-CL 535 (761)
Q Consensus 526 A~~~~~~m-~~ 535 (761)
|+++|+++ .+
T Consensus 337 A~~~~~~l~~~ 347 (382)
T 2h6f_A 337 ALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998 53
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-09 Score=111.81 Aligned_cols=217 Identities=11% Similarity=0.106 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004324 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCA-------KEGDV-------EDAEKTWLRLLES-DNGIPTPAFVYKMEAYA 378 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~ 378 (761)
++|..+|++..... .-+...|..+...+. +.|++ ++|..+|++..+. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 56667777766542 225566666666654 45886 8999999999983 432 5678999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSAS-VP-AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL-NLGMHDR 455 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~-~~g~~~~ 455 (761)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999874 454 33 79999999999999999999999998854 234455554444432 3699999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004324 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (761)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (761)
|..+|+..++..+.+...|..++..+.+.|++++|..+|++......++| ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875567899999999999999999999999999998632455 4678999999999999999999999999
Q ss_pred HH
Q 004324 534 CL 535 (761)
Q Consensus 534 ~~ 535 (761)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-09 Score=110.08 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 349 EDAEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEF-------MKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (761)
Q Consensus 349 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (761)
++|..+|++..+..+. +...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6788899998887543 67888888877764 5886 8999999999873123356689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 004324 415 AEETELTESLMKEFVETGMKPL-MP-SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK-NAGNIEKAE 491 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 491 (761)
.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+..+++...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999984 454 33 89999999999999999999999999755566666765544433 369999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhh
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (761)
++|++..+.. +-+...|..++..+.+.|++++|..+|++.++.. ..+|+ .
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~---------------------------~ 239 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPE---------------------------K 239 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGG---------------------------G
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHH---------------------------H
Confidence 9999998863 4578899999999999999999999999999642 11221 1
Q ss_pred HHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccch
Q 004324 572 RENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR 605 (761)
Q Consensus 572 ~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~ 605 (761)
...+|..++......|+.+.|..+++ +...|++.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 25678888888888999999998888 77788754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-09 Score=101.90 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++|...+....... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45566666777777777777777777666542 2245566666677777777777777777666643 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
.+...++++.|...+.+..+..+.+..++..+...|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHH
Confidence 77777777777777777766556677788888888888888888888888887764 4467778888888888888888
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
|++.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=119.22 Aligned_cols=343 Identities=10% Similarity=0.002 Sum_probs=216.7
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF---AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAP 229 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~ 229 (761)
...+.|++++|.++|+...+.| +...+..|-.+|...|.. ++|..+|++..+. +...+..+-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~--- 80 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA--- 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH---
Confidence 4457789999999999998887 333445566667777888 8999999988764 4455555555444
Q ss_pred CCC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004324 230 VQG-----CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (761)
Q Consensus 230 ~~g-----~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (761)
..+ +.++|+..|++..+. |. |+ .+..+-..+....+ .. .-.++.+.+......|.. .. ...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g~-~~--A~~~Lg~~y~~~~~-~~--~~~~a~~~~~~a~~~g~~-~a--~~~Lg-- 148 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-GE-GN--TLIPLAMLYLQYPH-SF--PNVNAQQQISQWQAAGYP-EA--GLAQV-- 148 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-TC-SS--CHHHHHHHHHHCGG-GC--TTCCHHHHHHHHHHHTCT-TH--HHHHH--
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHhCCC-CC--CCHHHHHHHHHHHHCCCH-HH--HHHHH--
Confidence 233 788999999998885 33 33 33333334433211 00 113456666666655542 21 11121
Q ss_pred HhhccCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004324 305 HSYQDNI----DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG---DVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (761)
Q Consensus 305 ~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 377 (761)
..+...+ ..+.+..+++.... .+...+..+...|.+.| +.++|.+.|+...+.|.. +...+..|...|
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 2222223 34555555544332 23337788888888899 899999999999988853 555556677777
Q ss_pred HHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 378 AKI----GEFMKSLEIFREMQERLGSASVPAYHKIIEL-L--CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 378 ~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
... ++.++|.+.|++.. .| +...+..|-.. + ...++.++|...|++..+.| +...+..|..+|. .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred hCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 655 78999999999887 43 45566666655 3 45889999999999999877 6778888888887 5
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--
Q 004324 451 G-----MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS-- 519 (761)
Q Consensus 451 g-----~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~-- 519 (761)
| +.++|..+|.+.. .-+...+..|...|.. ..++++|..+|++..+.| +......|-..|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCC
Confidence 5 8999999998877 6678888888888877 338999999999998887 44455666666664
Q ss_pred --CCCHHHHHHHHHHHHHcCC
Q 004324 520 --SGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 520 --~g~~~~A~~~~~~m~~~g~ 538 (761)
..+.++|..+|++..+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 4578999999999887663
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-09 Score=101.82 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+..+|..+...|.+.|++++|.+.|++..+..+. +..+|..+...|.+.|++++|...+....... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 6788999999999999999999999999988754 78889999999999999999999999988763 336777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
.+...++++.|...+.+..+.. +-+..++..+...|.+.|++++|.+.|++..+..+.+..+|..+...|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998864 446788999999999999999999999999886677899999999999999999999
Q ss_pred HHHHHHhhhCC
Q 004324 491 EEIFNHMHSDQ 501 (761)
Q Consensus 491 ~~l~~~m~~~g 501 (761)
.+.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999998853
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-07 Score=106.78 Aligned_cols=416 Identities=7% Similarity=0.010 Sum_probs=272.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcC
Q 004324 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERK---FAKCRDIFDDIINQG-RVPSEMTFHILIVAYLSA 228 (761)
Q Consensus 153 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~g-~~pd~~~~~~li~~~~~~ 228 (761)
.+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+..+|++..... ..|++..|..-+.-..
T Consensus 75 ~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~-- 150 (679)
T 4e6h_A 75 HHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVR-- 150 (679)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH--
T ss_pred HHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--
Confidence 344567899999999999998 68899999999999999999 999999999998863 2478889988776544
Q ss_pred CCCCC--------HHHHHHHHHHHHhcCCC-CCC-HHHHHHHHHHHHcCCCCC---chhhHHHHHHHHHHHHHcCCCcCH
Q 004324 229 PVQGC--------LDEACSIYNRMIQLGGY-QPR-PSLHNSLFRALVSKPGGL---SKYYLQQAEFIFHNLLTSGLEIQK 295 (761)
Q Consensus 229 ~~~g~--------~~~A~~l~~~m~~~~g~-~p~-~~t~~~ll~~~~~~~g~~---~~g~~~~A~~~~~~m~~~~~~p~~ 295 (761)
+.+. .+...++|+.....-|. .|+ ...|...+.-.....+.. .++.++.+..+|.+.+........
T Consensus 151 -~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~ 229 (679)
T 4e6h_A 151 -KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLE 229 (679)
T ss_dssp -HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHH
T ss_pred -HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHH
Confidence 2222 23455788877665466 665 456766666543211100 124678899999998853222122
Q ss_pred HHHHHHHHHH-hhcc----------CCCHHHHHHHHHHHHHc--CCC---------------C-----C---HHHHHHHH
Q 004324 296 DIYSGLIWLH-SYQD----------NIDKERISLLKKEMQQA--GFE---------------E-----G---KEVLLSVL 339 (761)
Q Consensus 296 ~~~~~li~~~-~~~~----------~g~~~~a~~l~~~m~~~--g~~---------------p-----~---~~~~~~ll 339 (761)
.++....... .... ..+++.|...+.++... ++. | + ...|...+
T Consensus 230 ~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi 309 (679)
T 4e6h_A 230 SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309 (679)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHH
Confidence 3332221110 0000 01123344444443221 221 1 1 12343443
Q ss_pred HHHHhcC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 340 RVCAKEG-------DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL-EIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 340 ~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
.---..+ ..+.+..+|++.+..-+. ....|-..+.-+-+.|+.++|. ++|++.... ++.+...|-..+..
T Consensus 310 ~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ 387 (679)
T 4e6h_A 310 RWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQ 387 (679)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 3222221 123345678777776433 6778888888888889998996 999988764 55566677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 004324 412 LCKAEETELTESLMKEFVETG---------MKPL------------MPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRP 469 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~p 469 (761)
.-+.|++++|.++|+.+.+.. -.|+ ..+|...+....+.|.++.|+.+|....+. ...
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 888999999999999988641 0132 235777777777888899999999998763 222
Q ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 470 NRTIYGIYLESLKNAG-NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 470 ~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
....|-..+..-.+.| +.+.|.++|+...+. ++-+...|...+......|+.+.|..+|++.+... +++.
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~--~~~~----- 538 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI--SDSH----- 538 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS--SSTT-----
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--CCHH-----
Confidence 3334443333333444 589999999998886 45567777788888888899999999999988532 2111
Q ss_pred HHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchh
Q 004324 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRM 606 (761)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~ 606 (761)
....+|...+.--..+|+.+.+..+.+ .+..|++..
T Consensus 539 ----------------------~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 539 ----------------------LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 126788889988889999999999988 777887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-09 Score=116.83 Aligned_cols=299 Identities=10% Similarity=-0.001 Sum_probs=208.2
Q ss_pred CCCCHHHHHHHHHHHHhcC-CC--CCCHHHHHHHHHHHHcCCCCCchhhHHHHH-----------HHHHHHHHcCCCcC-
Q 004324 230 VQGCLDEACSIYNRMIQLG-GY--QPRPSLHNSLFRALVSKPGGLSKYYLQQAE-----------FIFHNLLTSGLEIQ- 294 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~-g~--~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~-----------~~~~~m~~~~~~p~- 294 (761)
+.+++++|..+++++.+.- .+ .++...|-.++..-.... .+.++.+. ..++.+.......+
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~----~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~ 99 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM----LEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTG 99 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----HHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH----HhhcCcccccccccccchhhHHHHHHhcCCCchh
Confidence 4678888888888775531 22 223333344433211100 02334444 55555543221111
Q ss_pred -HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C--
Q 004324 295 -KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-- 365 (761)
Q Consensus 295 -~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-- 365 (761)
...+..+..+..+...|++++|...|++....- -.+| ..++..+..+|...|++++|.+.+.+..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112233345567788999999999999987641 1122 457888999999999999999999987764111 1
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 004324 366 ---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEETELTESLMKEFVET----GM 433 (761)
Q Consensus 366 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~ 433 (761)
...+++.+...|...|++++|.+.|++..+..- .++ ..+|+.+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 235788899999999999999999998764310 012 246888999999999999999999998872 33
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC
Q 004324 434 -KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIG 504 (761)
Q Consensus 434 -~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~ 504 (761)
.....++..+...|.+.|++++|...+++..+ +.+.....++.+...|...|+ +++|+.++++... .+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---YA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---HH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---HH
Confidence 33467889999999999999999999999875 122233446778888889999 8889888888732 22
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.....+..+...|.+.|++++|.++|++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345778889999999999999999999875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-10 Score=117.64 Aligned_cols=274 Identities=13% Similarity=0.002 Sum_probs=202.7
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCH
Q 004324 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IPT 367 (761)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~ 367 (761)
....+..+..+...|++++|..+|++..+.... + ..++..+...|...|++++|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344455567788899999999999999886422 3 367788899999999999999999886653 211 124
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELTE 422 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A~ 422 (761)
.++..+...|...|++++|...|.+..+... .++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5778889999999999999999998754210 112 3478888889999999 99999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 004324 423 SLMKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 423 ~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~ 491 (761)
..+++.... +-.+ ...++..+...|...|++++|...+++..+ .-.++ ..++..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887652 2111 245788888999999999999999999875 11122 337888999999999999999
Q ss_pred HHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 492 EIFNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
+.+++......-.++ ..++..+...|...|++++|..++++..+. .+.. .
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~----------------------~ 297 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----AQEL----------------------K 297 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHH----------------------T
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HHhc----------------------C
Confidence 999987653100012 567888899999999999999999998752 1110 0
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
.+.....++..+...+...|+.++|...++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 000114567777788888999999998877
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-10 Score=124.80 Aligned_cols=276 Identities=13% Similarity=-0.002 Sum_probs=205.0
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCAKEGDVEDAEKTWLRLLES----DN-GIPTPAF 370 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~ 370 (761)
.+..+..+...|++++|...|++..+.... +. .++..+...|...|++++|.+.+++..+. +. .....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334456778899999999999999886422 32 47888889999999999999999887664 11 1234678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQER----LGS-ASVPAYHKIIELLCKAEE-----------------TELTESLMKEF 428 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~-----------------~~~A~~l~~~m 428 (761)
..+...|...|++++|...|++..+. +-. ....+|..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999987543 111 124478888899999999 99999999887
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 429 VET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 429 ~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
.+. +-.+ ...++..+...|...|++++|...+++..+.. .++ ..++..+...|...|++++|.+.|++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 652 2111 23578888999999999999999999987511 122 237888999999999999999999987
Q ss_pred hhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHH
Q 004324 498 HSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (761)
Q Consensus 498 ~~~g~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 573 (761)
..... ......++..+...|...|++++|..++++..+. .+.. . ......
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~---------------------~-~~~~~~ 343 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI----AQEL---------------------G-DRIGEA 343 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHH---------------------T-CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHC---------------------C-ChHHHH
Confidence 76320 0012568888999999999999999999998752 1110 0 000124
Q ss_pred hHHHHHhhhhhhhhhhhHHHHHHH--hhccc
Q 004324 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNE 602 (761)
Q Consensus 574 ~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p 602 (761)
.++..+...+...|+.++|...++ +.+.+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 566777778888999999998887 44443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-10 Score=121.55 Aligned_cols=261 Identities=12% Similarity=-0.024 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 346 (761)
|++++|...|+++++.+.. +.. ...+..++..+...|++++|...+++.... +-.| ...++..+...|...|
T Consensus 62 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 5999999999999887543 222 123344457778889999999999887653 1112 3456788889999999
Q ss_pred ChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc----CCCC
Q 004324 347 DVEDAEKTWLRLLESD-----NGIPTPAFVYKMEAYAKIGE-----------------FMKSLEIFREMQER----LGSA 400 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p 400 (761)
++++|.+.+++..+.. ......++..+...|...|+ +++|.+.+.+..+. +..+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 220 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999877641 11134578889999999999 99999999876432 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---
Q 004324 401 -SVPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE---KCR--- 468 (761)
Q Consensus 401 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~--- 468 (761)
...+|..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+ ...
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 234688888999999999999999999876311 112 33788899999999999999999999875 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
....++..+...|...|++++|.+.|++...... ......++..+...|.+.|++++|.++|++..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1256888999999999999999999998866310 001245788899999999999999999999986
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.7e-10 Score=121.41 Aligned_cols=214 Identities=13% Similarity=0.011 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004324 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV-EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (761)
.++++..+++.... ...+...+..+..+|...|++ ++|.+.|++..+.... +...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666655433 223677888888888899999 9999999988887643 57888889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004324 392 EMQERLGSASVPAYHKIIELLCKA---------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNL--------GMHD 454 (761)
Q Consensus 392 ~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~--------g~~~ 454 (761)
+..+. .|+...|..+...|... |++++|...+++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88875 47778888888888888 99999999999988864 33578888888888888 8899
Q ss_pred HHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (761)
Q Consensus 455 ~a~~~~~~m~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (761)
+|...|++..+..+ .+...|..+...|...|++++|.+.|++..+.. +-+...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999887434 588899999999999999999999999988864 4466788888888889999888888765
Q ss_pred HH
Q 004324 532 LM 533 (761)
Q Consensus 532 ~m 533 (761)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-09 Score=116.93 Aligned_cols=261 Identities=13% Similarity=0.003 Sum_probs=197.7
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 346 (761)
|++++|...|++..+.+.. +.. ......++..+...|++++|...+++.... +-.| ...++..+...|...|
T Consensus 23 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 5999999999999887543 222 223334457788899999999999886543 2122 2456778888999999
Q ss_pred ChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHc----C
Q 004324 347 DVEDAEKTWLRLLESDNG-IP----TPAFVYKMEAYAKIGE--------------------FMKSLEIFREMQER----L 397 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g 397 (761)
++++|...+++..+.... .+ ..++..+...|...|+ +++|.+.+.+.... +
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 181 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG 181 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999887764211 12 4478888999999999 99999999876432 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC
Q 004324 398 GSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RP 469 (761)
Q Consensus 398 ~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p 469 (761)
..| ...+|..+...|...|++++|...+++..+.. -.++ ..++..+...|...|++++|...+++..+.. .+
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 111 13468888899999999999999999987631 1122 3478889999999999999999999987511 12
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 470 N----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 470 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+ ..++..+...|...|++++|...|++......-.++ ..++..+...|.+.|++++|.+.+++..+
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 568889999999999999999999987653100112 56888899999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-10 Score=115.19 Aligned_cols=238 Identities=14% Similarity=0.106 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 004324 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQA-------GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------D 362 (761)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g 362 (761)
.......++..+...|++++|..+|+++.+. .......++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444557788889999999999988763 22224566788888899999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 004324 363 N-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET--- 431 (761)
Q Consensus 363 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--- 431 (761)
- .....++..+...|...|++++|.+.|++..+. +..| ...++..+...|...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123567788889999999999999999988754 2222 3456788888899999999999999998774
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 004324 432 ---GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--------CRP-------NRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 432 ---g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~p-------~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
+-.| ...++..+...|...|++++|...++++.+. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2223 2457788888999999999999999888741 111 12233334444555566666777
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 493 l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+....... +.+..+|..+...|.+.|++++|.++|++..+
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766543 34567899999999999999999999999874
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-09 Score=117.67 Aligned_cols=213 Identities=10% Similarity=-0.003 Sum_probs=178.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF-MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
.++++.+.++....... .+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667777777665543 4788899999999999999 99999999998763 335889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------GNIE 488 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------g~~~ 488 (761)
++..+. .|+..++..+...|... |++++|...|++..+..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999985 47788999999999999 9999999999999986677899999999999999 9999
Q ss_pred HHHHHHHHhhhCCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccC
Q 004324 489 KAEEIFNHMHSDQTIG---VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 565 (761)
+|.+.|++..+.. + -+...|..+...|...|++++|.+.|++..+ .+|+.
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~--------------------- 291 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA----LDPAW--------------------- 291 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC---------------------
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC---------------------
Confidence 9999999999864 2 3889999999999999999999999999986 33332
Q ss_pred CCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH
Q 004324 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (761)
Q Consensus 566 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 597 (761)
..+|..+...+...|+.++|.....
T Consensus 292 -------~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 292 -------PEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666666777777765543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-09 Score=98.70 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 447 (761)
..|..+...|...|++++|...|+++.+. .+.+...|..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455556666666666666666665543 12345566666666666667777776666666542 33456666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
...|++++|.+.++++.+..+.+...+..+...|...|++++|.++|++..... +.+..+|..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766555677788888888888888888888888887763 446778888888888888888888
Q ss_pred HHHHHHHH
Q 004324 528 KIYDLMCL 535 (761)
Q Consensus 528 ~~~~~m~~ 535 (761)
+++++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-09 Score=110.74 Aligned_cols=293 Identities=11% Similarity=0.082 Sum_probs=201.6
Q ss_pred HhhccCCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHH--HhcCChHHHH-----------HHHHHHHhCCCCCC-
Q 004324 305 HSYQDNIDKERISLLKKEMQQA--GFEEGK--EVLLSVLRVC--AKEGDVEDAE-----------KTWLRLLESDNGIP- 366 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~--g~~p~~--~~~~~ll~~~--~~~g~~~~a~-----------~~~~~m~~~g~~~~- 366 (761)
+.+.+.+++++|..+++++.+. .++.|. ..|-.++..- .-.+.++.+. ++++.+.......+
T Consensus 20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~ 99 (383)
T 3ulq_A 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTG 99 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchh
Confidence 4455678899999999888664 233343 3334443322 1234444444 66666554321101
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC-
Q 004324 367 ---TPAFVYKMEAYAKIGEFMKSLEIFREMQERL-GSAS----VPAYHKIIELLCKAEETELTESLMKEFVET--GMKP- 435 (761)
Q Consensus 367 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p- 435 (761)
...+......+...|++++|...|++..+.- -.+| ..+|..+...|...|++++|...+.+..+. ....
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 0112225567788999999999999987531 0122 357888899999999999999999998862 1111
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC
Q 004324 436 ---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQ 501 (761)
Q Consensus 436 ---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g 501 (761)
...+++.+...|...|++++|...|.+..+ .-.++ ..+|+.+...|...|++++|.+.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 145788899999999999999999999875 11122 24788899999999999999999999877 32
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCc-cChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHh
Q 004324 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE-IESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLL 580 (761)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll 580 (761)
.+....++..+...|.+.|++++|.+.+++..+..-. .++.. ...+..|.
T Consensus 260 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~l~ 310 (383)
T 3ulq_A 260 -LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY----------------------------LSEFEFLK 310 (383)
T ss_dssp -GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----------------------------HHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------HHHHHHHH
Confidence 1334678999999999999999999999998752100 01111 22244455
Q ss_pred hhhhhhhh---hhHHHHHHH-hhccccchhhHHHHHHHHHhhhhccCCCC
Q 004324 581 GGLCIESD---EKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 581 ~~~~~~g~---~~~a~~~~~-~~l~p~~~~~~~~l~~~~~~~g~~~~a~~ 626 (761)
..+...|+ .++|...++ ....|.....+..++.+|...|++++|..
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 55666666 677777776 55556666678889999999999998885
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-09 Score=110.08 Aligned_cols=132 Identities=14% Similarity=0.009 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----HH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RT 472 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~ 472 (761)
++..+...+...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+. -..+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455555556666666666666655543210 011 235566666667777777777777666531 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+...|...|++++|...+++.... +.......++..+...|.+.|++++|..++++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6677777777788888887777776542 10001144677777788888888888888887775
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-08 Score=106.86 Aligned_cols=319 Identities=14% Similarity=0.109 Sum_probs=206.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004324 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL---DEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (761)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~---~~A~~l~~~m~~~~g~~p~~~t~~~ll~ 262 (761)
+...+.+.|++++|.++|++..+.| +..++..+-..|. ..|+. ++|+..|++..+ . .|+ .+..+-.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~---~~g~~~d~~~A~~~~~~A~~--~-~~~--A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQV---GTRDPAQIKQAEATYRAAAD--T-SPR--AQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHh--C-CHH--HHHHHHH
Confidence 5566778999999999999998876 3334555555555 46777 999999999875 2 333 3333333
Q ss_pred HHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVC 342 (761)
Q Consensus 263 ~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 342 (761)
.+.. .+....++.++|...|++..+.|...-......+. ...-..... .++.+.+......|. ......+...|
T Consensus 78 ~~~~-~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~~~~~~~~-~~a~~~~~~a~~~g~---~~a~~~Lg~~y 151 (452)
T 3e4b_A 78 LLAA-KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLY-LQYPHSFPN-VNAQQQISQWQAAGY---PEAGLAQVLLY 151 (452)
T ss_dssp HHHT-C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH-HHCGGGCTT-CCHHHHHHHHHHHTC---TTHHHHHHHHH
T ss_pred HHHh-CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCCCCCCC-HHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 2333 22223358999999999999988643222221111 111111112 456666666666653 44566777778
Q ss_pred HhcCChHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 343 AKEGDVEDAE----KTWLRLLESDNGIPTPAFVYKMEAYAKIG---EFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (761)
Q Consensus 343 ~~~g~~~~a~----~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (761)
...+.++++. .++...... +...+..|...|.+.| +.++|++.|++..+.|. ++...+..|...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG
T ss_pred HcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC
Confidence 7777555444 444443332 3348888999999999 99999999999998874 4555556666666554
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---
Q 004324 416 ----EETELTESLMKEFVETGMKPLMPSYINLTNM-Y--LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG--- 485 (761)
Q Consensus 416 ----g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g--- 485 (761)
++.++|...|+... .| +...+..|..+ | ...++.++|..+|.+..+ ..+...+..|...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCC
Confidence 69999999999988 44 55667777776 4 468899999999999886 237888888988888 56
Q ss_pred --CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Q 004324 486 --NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 486 --~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 538 (761)
++++|.++|++.. .| +...+..|-..|.. ..++++|.++|++..+.|.
T Consensus 300 ~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999999999998 76 77888888877776 3489999999999997664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-09 Score=96.33 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (761)
..+..+...+...|++++|.+.++.+.+.... +..++..+...|...|++++|...|+++.+.. +.+...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45666777888889999999998888776543 67788888889999999999999999887762 34677888888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+..+.+..++..+...|...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988764 44678888888999999999999999999887556678899999999999999999999
Q ss_pred HHHHhhhC
Q 004324 493 IFNHMHSD 500 (761)
Q Consensus 493 l~~~m~~~ 500 (761)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-08 Score=97.67 Aligned_cols=208 Identities=11% Similarity=0.071 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 445 (761)
|...|..+...|.+.|++++|...|++..+..-+++...+..+..++...|++++|...+++..+.. +-+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566777777778888888888888877766433566666667777777888888888887777643 224556777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNR-------TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILS 515 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~---~~t~~~li~ 515 (761)
.|...|++++|...|++..+..+.+. .+|..+...+...|++++|.+.|++..+.. |+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHHHH
Confidence 77777777777777777776444455 456666777777777777777777777653 44 455555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 595 (761)
.|.. .+..+++++...+. .+ ...|..+. ....+.+++|...
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~-~~-------------------------------~~~~~~~~--~~~~~~~~~A~~~ 202 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLAS-SN-------------------------------KEKYASEK--AKADAAFKKAVDY 202 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTT-TC-------------------------------HHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhccc-CC-------------------------------HHHHHHHH--HHHHHHHHHHHHH
Confidence 5543 23334444443210 01 11122222 2345778899988
Q ss_pred HH--hhccccchhhHHHHHHHHH
Q 004324 596 IR--FQFNENSRMHSVLRRYLYD 616 (761)
Q Consensus 596 ~~--~~l~p~~~~~~~~l~~~~~ 616 (761)
++ +++.|++......+..+..
T Consensus 203 ~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 203 LGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHhhcCCCCHHHHHHHHHHHH
Confidence 88 8899999877777666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-09 Score=108.08 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=157.9
Q ss_pred chhhHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 004324 272 SKYYLQQAEFIFHNLLTSG-----LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEE-GKEVLLSVL 339 (761)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~ll 339 (761)
..|++++|..+|+++.+.. ..+.........++..+...|++++|...+++.... +-.| ...++..+.
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4578999999999998741 111223333444457888999999999999988764 2222 356788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLES------DNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAY 405 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~------g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~ 405 (761)
..|...|++++|.+.++++.+. +.. ....++..+...|...|++++|.++|++..+. +..| ...++
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999998875 211 23456888999999999999999999998764 2223 24568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH
Q 004324 406 HKIIELLCKAEETELTESLMKEFVET-------GMKPLM-------PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR 471 (761)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~ 471 (761)
..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...+.......+.+.
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence 88999999999999999999999863 122221 2222333334444555566666666654444567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+|..+...|.+.|++++|.++|++..+
T Consensus 279 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 279 TTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999998775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-06 Score=98.40 Aligned_cols=416 Identities=9% Similarity=0.022 Sum_probs=271.8
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHhhhcccCCcchhhhhH---HHhccCC---hhHHHHHHHHHHHcCCCCCCHHHH
Q 004324 110 QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV---HCMRIRE---NETGFRVYEWMMQQHWYRFDFALA 183 (761)
Q Consensus 110 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~---~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~ 183 (761)
.|. ..+.+....+....+..+++.... .-|....+-.. .-.+.+. ++.+..+|+..+.....+|++..|
T Consensus 68 ~W~-~yi~~~~~~~~~~~aR~vyEraL~----~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 68 LYV-KLLKHHVSLKQWKQVYETFDKLHD----RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred HHH-HHHHHHHhcCcHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 443 345555555566666666665443 34666655543 3445677 999999999999874224899999
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHh
Q 004324 184 TKLADYMGKERKF--------AKCRDIFDDIIN-QGR-VP-SEMTFHILIVAYLSAP------VQGCLDEACSIYNRMIQ 246 (761)
Q Consensus 184 ~~li~~~~~~g~~--------~~A~~~f~~m~~-~g~-~p-d~~~~~~li~~~~~~~------~~g~~~~A~~l~~~m~~ 246 (761)
..-+....+.+.+ +...++|+.... .|. .| +...|...|.-..... ..++++.+..+|.....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9998887776654 334578887554 466 55 4578888887543100 12357788999999875
Q ss_pred cCCCCCCHHHHH---HHHHHHHcCCCC----CchhhHHHHHHHHHHHHH--cCCC---------------c-----C-HH
Q 004324 247 LGGYQPRPSLHN---SLFRALVSKPGG----LSKYYLQQAEFIFHNLLT--SGLE---------------I-----Q-KD 296 (761)
Q Consensus 247 ~~g~~p~~~t~~---~ll~~~~~~~g~----~~~g~~~~A~~~~~~m~~--~~~~---------------p-----~-~~ 296 (761)
. ....-..+|. .....+....+. .....++.|...+.++.. .++. | + ..
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 3 1111122332 222221000000 000134455566655422 1111 1 0 11
Q ss_pred HHHHHHHHHhhccCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHH
Q 004324 297 IYSGLIWLHSYQDNI-------DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE-KTWLRLLESDNGIPTP 368 (761)
Q Consensus 297 ~~~~li~~~~~~~~g-------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~ 368 (761)
...|.-.+..--..+ ..+++..+|++.... +.-+...|-....-+.+.|+.++|. ++|+......+ .+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHH
Confidence 122221111111111 134566778887765 3336778888888888899999996 99999987543 4677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL---------GSAS------------VPAYHKIIELLCKAEETELTESLMKE 427 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~li~~~~~~g~~~~A~~l~~~ 427 (761)
.|-..+...-+.|++++|.++|+.+.+.. ..|+ ...|...+....+.|..+.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78888999999999999999999987641 0132 23688888888889999999999999
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 004324 428 FVET-GMKPLMPSYINLTNMYLNL-GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 428 m~~~-g~~pd~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p 505 (761)
..+. +. +....|...+..-.+. ++.+.|.++|+..++.++.+...|...++.....|+.+.|..+|+...... ++
T Consensus 460 A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~--~~ 536 (679)
T 4e6h_A 460 CRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI--SD 536 (679)
T ss_dssp HHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS--SS
T ss_pred HHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--CC
Confidence 9886 31 1223343333333344 458999999999998777788889999999999999999999999998874 21
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 506 ---NTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 506 ---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
....|...+.--.+.|+.+.+.++.++|.+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999974
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-08 Score=106.08 Aligned_cols=233 Identities=11% Similarity=0.043 Sum_probs=177.9
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CC-CHH
Q 004324 300 GLIWLHSYQDNIDKERISLLKKEMQQAGF-EEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-----GI-PTP 368 (761)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~~-~~~ 368 (761)
.+..+..+...|++++|...|++....-. .++ ..++..+..+|...|+++.|...+.+..+... .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34445567788999999999999876421 133 45678888999999999999999988775311 11 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET----GMKPLMPS 439 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t 439 (761)
+++.+...|...|++++|.+.|.+..+. +-.+ ...+++.+...|...|++++|...+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 7888999999999999999999987642 1111 1346788889999999999999999998871 22233678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCN 511 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p~~~t~~ 511 (761)
+..+...|.+.|++++|...+++..+ +.+.....++.+...|...|+ +.+|+.++++... .+.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC---hhHHHHHHH
Confidence 88999999999999999999999886 122334566777777888888 8888888887432 222345677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+...|.+.|++++|.+.|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999999999874
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-09 Score=106.24 Aligned_cols=225 Identities=13% Similarity=0.117 Sum_probs=156.1
Q ss_pred cCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCC-CCHHHHHHHH
Q 004324 309 DNIDKERISLLKKEMQQ-------AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------DNG-IPTPAFVYKM 374 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~-~~~~~~~~li 374 (761)
..|++++|+.+|++..+ ........++..+...|...|++++|.+.++++.+. +-. ....+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44556666666655443 222224567888999999999999999999998865 211 2356788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 004324 375 EAYAKIGEFMKSLEIFREMQER------L-GSASVPAYHKIIELLCKAEETELTESLMKEFVET------GMKP-LMPSY 440 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~------g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~ 440 (761)
..|...|++++|.+.|.+.... . .+....+|..+...|...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 1223567888999999999999999999999875 1123 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHhhhCCCCCC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEK---------CRPNRTIYGIYLESLKNAGN------IEKAEEIFNHMHSDQTIGV 505 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~---------~~p~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~~p 505 (761)
..+...|...|++++|...+++..+. .......|..+...+...+. +.++...++..... .+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD--SPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC--CHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC--CHH
Confidence 88999999999999999999998741 11223344444444443332 33444444433322 122
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 506 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...++..+...|.+.|++++|..+|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456888999999999999999999999874
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-08 Score=113.91 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
..+|+.|...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|.+.|++.++.. .-+..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555554431 1134455555555555555555555555555532 1134555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A 526 (761)
|.+.|++++|.+.|++.++..+-+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666555334456666666666666666666666666666643 22455666666666666666666
Q ss_pred HHHHHHHHH
Q 004324 527 EKIYDLMCL 535 (761)
Q Consensus 527 ~~~~~~m~~ 535 (761)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.1e-08 Score=112.26 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
..+|+.+-.+|.+.|++++|.+.|++..+..+. +..+|+.+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 567888999999999999999999999887654 67889999999999999999999999988753 2257789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
|.+.|++++|.+.|++..+.. .-+..+|+.+..+|.+.|++++|.+.|++.++..+-+...|..|...|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999998853 2357889999999999999999999999998755667889999999999999999999
Q ss_pred HHHHHhhh
Q 004324 492 EIFNHMHS 499 (761)
Q Consensus 492 ~l~~~m~~ 499 (761)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-07 Score=92.41 Aligned_cols=195 Identities=9% Similarity=-0.006 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (761)
.|...+......+...|++++|.+.|+...+....++...+..+..+|.+.|++++|.+.|++..+.. +-+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888999999999999999999999998765677888889999999999999999999998753 22566788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLES 480 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~ 480 (761)
..|...|++++|...+++..+.. +.+. .+|..+...+...|++++|...|++..+..+. +...|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999999854 2234 56888888999999999999999999875444 46788888888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|...| ..+++++...+ ..+...|.... ....+.+++|+..|++..+
T Consensus 163 ~~~~~-----~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 86554 45566666653 34555565554 3345678999999999986
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-07 Score=95.66 Aligned_cols=267 Identities=10% Similarity=-0.019 Sum_probs=183.9
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHH
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKE----VLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IP----TPAFVYKME 375 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~ 375 (761)
..+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+++..+.... .+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44567889999999999887754222332 4566777888999999999999887753211 12 233566788
Q ss_pred HHHHcCChHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQER----LGS--AS-VPAYHKIIELLCKAEETELTESLMKEFVETGMK--P--LMPSYINLT 444 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~li 444 (761)
.|...|++++|...+++.... +.. |. ..++..+...+...|++++|...+++.....-. + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 899999999999999987643 222 22 345667788899999999999999998874321 1 245788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CCHHHHHHHHH
Q 004324 445 NMYLNLGMHDRLHLAFSECLE--KCRPNRTIYG-----IYLESLKNAGNIEKAEEIFNHMHSDQTIG--VNTRSCNIILS 515 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~~--p~~~t~~~li~ 515 (761)
..+...|++++|...+++..+ ....+...+. .++..+...|++++|..++++......-. .....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 899999999999999998875 1111112222 23345779999999999999987653100 11346778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHH
Q 004324 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (761)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 595 (761)
.+...|++++|...+++.....-.... ... ...++..+..++...|+.++|...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~-------------------------~~~-~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRL-------------------------MSD-LNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------------HHH-HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcc-------------------------hhh-HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999988742100000 000 012444455566778888888877
Q ss_pred HH
Q 004324 596 IR 597 (761)
Q Consensus 596 ~~ 597 (761)
++
T Consensus 316 l~ 317 (373)
T 1hz4_A 316 LL 317 (373)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-07 Score=96.18 Aligned_cols=272 Identities=8% Similarity=0.014 Sum_probs=141.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004324 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEM----TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF 261 (761)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~----~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 261 (761)
+...+...|++++|...+++........+.. +++.+-..+. ..|++++|...+++......-.++...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH---CKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 3344556777778877777766643222222 3444445555 467788887777776542100011110
Q ss_pred HHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc----CCC--CC-HHH
Q 004324 262 RALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFE--EG-KEV 334 (761)
Q Consensus 262 ~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~--p~-~~~ 334 (761)
...........+...|++++|...+++.... +.. |. ..+
T Consensus 92 ----------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 92 ----------------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 0011111123334455555555555544332 211 22 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHH---
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGI----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-PAYH--- 406 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~--- 406 (761)
+..+...+...|++++|...+++..+..... ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 5556667777888888888877766543211 2345666777777778888888877776543111110 1111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCH-HHHH
Q 004324 407 --KIIELLCKAEETELTESLMKEFVETGMKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNR-TIYG 475 (761)
Q Consensus 407 --~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~-~~~~ 475 (761)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|...++.... +..++. .++.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 12233556777777777776655422111 122344555566666666666666665542 111111 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+...|...|+.++|...+++...
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555666666666666655543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-07 Score=99.45 Aligned_cols=316 Identities=8% Similarity=-0.032 Sum_probs=205.5
Q ss_pred CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHC--CCC--CCHHHHHHHHHHHhcC--CCCC------CHHHHHHHH
Q 004324 176 YRFDFALATKLADYM--GKERKFAKCRDIFDDIINQ--GRV--PSEMTFHILIVAYLSA--PVQG------CLDEACSIY 241 (761)
Q Consensus 176 ~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~--g~~--pd~~~~~~li~~~~~~--~~~g------~~~~A~~l~ 241 (761)
..|+..+-+.|-+.| .+.+++++|..+++++.+. .+. +++..|-.++..-... .... ......+.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345677777787887 7889999999999887653 121 2333333333321000 0011 112222555
Q ss_pred HHHHhcCCCCC-C-HHH--HHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCC-cC--HHHHHHHHHHHhhccCCCHH
Q 004324 242 NRMIQLGGYQP-R-PSL--HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-IQ--KDIYSGLIWLHSYQDNIDKE 314 (761)
Q Consensus 242 ~~m~~~~g~~p-~-~~t--~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~-p~--~~~~~~li~~~~~~~~g~~~ 314 (761)
+.+... ..| + ... |......+.... |++++|...|++..+.... ++ ........++..+...|+++
T Consensus 86 ~~i~~~--~~~~~~~l~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 86 ETIETP--QKKLTGLLKYYSLFFRGMYEFDQ-----KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHGG--GHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcc--CCCCccHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcH
Confidence 555432 111 1 111 112222222222 5999999999998764211 22 12222333447788899999
Q ss_pred HHHHHHHHHHHcC--C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCh
Q 004324 315 RISLLKKEMQQAG--F---EE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 315 ~a~~l~~~m~~~g--~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~ 383 (761)
.|...+++....- . .+ ...+++.+..+|...|++++|.+.+.+..+. +.. ....+++.+...|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 9999998876531 1 11 2456788899999999999999999887763 211 1235678899999999999
Q ss_pred HHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHHhcCC---
Q 004324 384 MKSLEIFREMQER----LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM---KP-LMPSYINLTNMYLNLGM--- 452 (761)
Q Consensus 384 ~~A~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p-d~~t~~~li~~~~~~g~--- 452 (761)
++|.+.|++..+. +.+....++..+...|.+.|++++|...+++..+..- .| ....+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999988761 2233367788899999999999999999999987421 12 24456667777778888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+.+|...++... ..+.....+..+...|...|++++|.+.|++..+
T Consensus 319 ~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777632 1122334677889999999999999999998765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=9.3e-08 Score=83.85 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|..+...+...|++++|..+++++.+.. +.+..++..+...|...|++++|..+++++.+..+.+...|..+...|...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444444445555555555555544432 223444455555555555555555555555543344555666666666666
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 485 GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|++++|.++|+++.... +.+..++..+...|.+.|++++|.+.|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666543 33456666666666666777777666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=82.97 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.|..+...|...|++++|..+|+++.+.. +.+...|..+...+...|++++|..+++++.+.+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566667777777777777777766542 2355666667777777777777777777776653 334566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..|++++|.+.++.+.+..+.+..++..+...|.+.|++++|.+.|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777644556777778888888888888888888887664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=101.09 Aligned_cols=224 Identities=13% Similarity=0.037 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCC
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEE-GKEVLLSVLRVCAKEGD 347 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~ 347 (761)
.+++|++++..+...+.. ........++..+...|++++|...+++.... +-.| ...++..+..+|...|+
T Consensus 23 ~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHP--DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHCSSSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 344444444444332222 23333444558888999999999999998765 2223 35578899999999999
Q ss_pred hHHHHHHHHHHHhCC-----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHH
Q 004324 348 VEDAEKTWLRLLESD-----N--GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLC 413 (761)
Q Consensus 348 ~~~a~~~~~~m~~~g-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~ 413 (761)
+++|.+.+.+..+.. . .....+|..+...|...|++++|...|++..+. +-.| ...++..+...|.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988751 1 123567888999999999999999999998764 1122 3567888999999
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 414 KAEETELTESLMKEFVET-------GMKPL-MPSYINLTNMYLNLGM------HDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~-------g~~pd-~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
..|++++|..++++..+. ...+. ...+..+...+...+. +..+...+.......+....++..+..
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 260 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999998863 12222 2233333333333222 222222222222122234567889999
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 004324 480 SLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.|...|++++|..+|++..+.
T Consensus 261 ~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-07 Score=93.98 Aligned_cols=196 Identities=10% Similarity=0.014 Sum_probs=128.4
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 004324 341 VCAKEGDVEDAEKTWLRLLES----DNGI-PTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIE 410 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~ 410 (761)
.|...|++++|.+.|.+..+. |-.+ ...+|+.+...|.+.|++++|+..|++..+. |-.. -..+|+.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666655443 2111 1346677777777777777777777765432 1100 0346777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCH-----HHHHHH
Q 004324 411 LLCKA-EETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--PNR-----TIYGIY 477 (761)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p~~-----~~~~~l 477 (761)
.|... |++++|...|++..+..- ..+ ..+++.+...|.+.|++++|...|++..+..+ +.. .+|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 888888888888776311 011 34678888889999999999999998886221 111 267788
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH------HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCccChH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTR------SCNIILSAYL--SSGDFVKAEKIYDLMCLKKYEIESA 543 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~------t~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~ 543 (761)
..+|...|++++|...|++..+.. |+.. .+..++.+|. ..+++++|++.|+++.. ++|.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~----l~~~ 272 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSED---PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR----LDKW 272 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC----CCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC---CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc----cHHH
Confidence 888999999999999999987742 4322 3445666665 45678888888877653 5554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.8e-07 Score=88.07 Aligned_cols=212 Identities=10% Similarity=0.088 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHH
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS---VPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL-MPSY 440 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~t~ 440 (761)
+...+-.+...+.+.|++++|...|+++.+.. +-+ ...+..+..+|.+.|++++|...|+...+..- .|. ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555666666677777777776666542 112 44555666666666666666666666666321 111 3344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 004324 441 INLTNMYLN--------LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (761)
Q Consensus 441 ~~li~~~~~--------~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~ 512 (761)
..+..+|.. .|++++|...|+++.+..+.+...+.++. .+...... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 555555555 55566666666555542222222221111 11111110 0112356
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhh-------
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCI------- 585 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------- 585 (761)
+...|.+.|++++|+..|+++++.. |+... ....+..+..++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~---------------------------~~~a~~~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY--PDTPW---------------------------ADDALVGAMRAYIAYAEQSVR 204 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTSTT---------------------------HHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC--CCCch---------------------------HHHHHHHHHHHHHHhcccchh
Confidence 6788999999999999999998632 22110 02233334444443
Q ss_pred ---hhhhhHHHHHHH--hhccccch---hhHHHHHHHHHhhhhccCCCC
Q 004324 586 ---ESDEKRKRHMIR--FQFNENSR---MHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 586 ---~g~~~~a~~~~~--~~l~p~~~---~~~~~l~~~~~~~g~~~~a~~ 626 (761)
.|++++|...++ +...|++. .....+..++...++++++..
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 488999999998 78888874 456678888888888877665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-07 Score=92.76 Aligned_cols=218 Identities=8% Similarity=-0.006 Sum_probs=154.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSAS-VPAYHKIIELLCKAEETELT 421 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A 421 (761)
++++|...|... ...|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887765 45688899999999999987543 22222 46799999999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCCHHH
Q 004324 422 ESLMKEFVETGMK-PL----MPSYINLTNMYLNL-GMHDRLHLAFSECLEKCR--PN----RTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 422 ~~l~~~m~~~g~~-pd----~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~~~--p~----~~~~~~li~~~~~~g~~~~ 489 (761)
...+++..+.... .+ ..+++.+...|... |++++|...|++..+-.+ .+ ..+|+.+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988763111 12 45788999999996 999999999999875111 11 4578899999999999999
Q ss_pred HHHHHHHhhhCCCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccccc
Q 004324 490 AEEIFNHMHSDQTIGVNT-----RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVS 564 (761)
Q Consensus 490 A~~l~~~m~~~g~~~p~~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 564 (761)
|...|++......-.+.. .+|..+..++...|++++|...|++..+ .+|......
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~---------------- 236 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS----EDPNFADSR---------------- 236 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC----C------------------------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCCCcH----------------
Confidence 999999998854111111 2677888889999999999999999874 344320000
Q ss_pred CCCchhhHHhHHHHHhhhhh--hhhhhhHHHHHHH--hhccccchh
Q 004324 565 LNLSSEQRENLIGLLLGGLC--IESDEKRKRHMIR--FQFNENSRM 606 (761)
Q Consensus 565 ~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~--~~l~p~~~~ 606 (761)
....+..|+.++. ..++++.|...++ ..++|....
T Consensus 237 -------~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 -------ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 0123334444443 3456777777775 667776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-06 Score=82.02 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 004324 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE----ETELTESLM 425 (761)
Q Consensus 350 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~ 425 (761)
+|.+.|++..+.| +...+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666665 56666667777777777777777777776654 45566666666665 5 677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKN----AGNIEKAEEIFN 495 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~----~g~~~~A~~l~~ 495 (761)
++..+.| +..++..|...|.. .+++++|..+|.+..+.-. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776655 45666677777766 6777888887777765211 126777777777777 678888888888
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHcCC
Q 004324 496 HMHSDQTIGVNTRSCNIILSAYLSS-G-----DFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 496 ~m~~~g~~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 538 (761)
+..+.+ .+...+..|-..|... | +.++|..+|++..+.|.
T Consensus 154 ~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887762 2455666677777653 2 78888888888887664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=87.11 Aligned_cols=184 Identities=10% Similarity=0.046 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 004324 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS-VPAY 405 (761)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 405 (761)
.+...+-.+...+.+.|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|++..+..- .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3567777888889999999999999999998764311 57788899999999999999999999987621 122 4567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 004324 406 HKIIELLCK--------AEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (761)
Q Consensus 406 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (761)
..+..++.. .|++++|...|++..+.. |+ ......+. .+..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~---~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRA---KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHH---HHHHHHHH
Confidence 778888888 999999999999999853 33 12221111 1111110 01123567
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhC----------CCHHHHHHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLSS----------GDFVKAEKIYDLMCL 535 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~----~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~ 535 (761)
+...|.+.|++++|...|++..+.. |+ ...+..+..+|... |++++|...|+++.+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 7888999999999999999998764 43 45677777788766 889999999999986
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-06 Score=82.23 Aligned_cols=130 Identities=11% Similarity=-0.028 Sum_probs=87.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN- 486 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~- 486 (761)
+...|.+.|++++|...|++..+.. +-+...+..+...|...|++++|...|++.++..+.+..+|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 6677778888888888888877753 33567778888888888888888888888877556677788888877766553
Q ss_pred -HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChH
Q 004324 487 -IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (761)
Q Consensus 487 -~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 543 (761)
.+.+...++.... ..|....+..+..++...|++++|+..|++.++ ..|++.
T Consensus 139 ~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 139 EKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3445555555432 223333444455566677888888888888874 345544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.4e-08 Score=88.15 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=108.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~ 523 (761)
..++...|++++|...+.......+-+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 3445566778888888887764333345566778889999999999999999988864 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHH-HH--hhc
Q 004324 524 VKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM-IR--FQF 600 (761)
Q Consensus 524 ~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~--~~l 600 (761)
++|+..|++..+ .+|+ +..+|..+...+...|+.++|.+. ++ +.+
T Consensus 82 ~~A~~~~~~al~----~~p~----------------------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVE----LNPT----------------------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHH----HCTT----------------------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCC----------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999885 3443 255677777778888888765544 45 888
Q ss_pred cccchhhHHHHHHHHHhhhh
Q 004324 601 NENSRMHSVLRRYLYDQYHE 620 (761)
Q Consensus 601 ~p~~~~~~~~l~~~~~~~g~ 620 (761)
+|+++..|.+...++...|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 99999889888888887764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=87.73 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-----LMPSYINLT 444 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~li 444 (761)
..+..+|...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...|.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence 3444444445555555555544433321 113334444445555555555555555555442 23 133333333
Q ss_pred HHHH--hcC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CC----CCCHHHHHH
Q 004324 445 NMYL--NLG--MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ----TI----GVNTRSCNI 512 (761)
Q Consensus 445 ~~~~--~~g--~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~----~p~~~t~~~ 512 (761)
.++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.. .. +-|..+...
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 3311 112 455555555554432 2332222233335555566666666655443310 00 123444434
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+|......|+ +|.++++++.+
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHhCh--HHHHHHHHHHH
Confidence 4444444454 55566666653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-06 Score=87.34 Aligned_cols=226 Identities=8% Similarity=-0.037 Sum_probs=155.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004324 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352 (761)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 352 (761)
.|++++|..++++..+.... . .+...++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~-----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S-----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C-----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c-----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 47899999999887653221 0 111157888888887764 45677899999999
Q ss_pred HHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004324 353 KTWLRLLESDNGI-P----TPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 353 ~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~ 422 (761)
..|.+..+..... + ..+|+.+...|.+.|++++|+..|++..+. |-.. -..+|+.+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9988876542110 1 347888889999999999999999876542 1111 13467778888888 9999999
Q ss_pred HHHHHHHHcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC--CC-HHHHHHHHHHHHhcCCHHHHH
Q 004324 423 SLMKEFVETGMK---P--LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCR--PN-RTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 423 ~l~~~m~~~g~~---p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~--p~-~~~~~~li~~~~~~g~~~~A~ 491 (761)
..|++..+..-. + ...+++.+...|.+.|++++|...|++..+ ... +. ..++..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999888763111 1 145788888999999999999999998875 111 11 236667777888889999999
Q ss_pred HHHHHhhhCCCCCCC---HHHHHHHHHHHHhCCCHHHHHH
Q 004324 492 EIFNHMHSDQTIGVN---TRSCNIILSAYLSSGDFVKAEK 528 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~---~~t~~~li~~~~~~g~~~~A~~ 528 (761)
..|++.. ...-.++ ......++.+| ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999987 4200011 12344555555 5677665555
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-06 Score=83.89 Aligned_cols=200 Identities=12% Similarity=0.059 Sum_probs=151.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004324 316 ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (761)
Q Consensus 316 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (761)
|+..|++....+ .++..++..+..++...|++++|.+++......+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777888777655 56677777888999999999999999999877764 2267788889999999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 395 ERLGSA-----SVPAYHKIIELLCK--AE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 395 ~~g~~p-----~~~t~~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
+. .| +..+..-|..++.. .| +..+|..+|+++.+. .|+..+...|+.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 45 25566666666333 34 899999999998764 46645555666689999999999999997764
Q ss_pred C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 466 K----------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 466 ~----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
. -+.|..+.-.+|......|+ +|.++++++.+.. |+.... . ++.+....|+++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~---P~hp~i----~------d~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD---HEHAFI----K------HHQEIDAKFDELVR 304 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT---CCCHHH----H------HHHHHHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC---CCChHH----H------HHHHHHHHHHHHHH
Confidence 2 14577777677777777787 8999999999964 553221 1 23555666777664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.5e-06 Score=79.71 Aligned_cols=176 Identities=11% Similarity=0.036 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHH
Q 004324 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG----EFMKSLEIF 390 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 390 (761)
+|+..|++..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566777777665 67888888888888999999999999998887 57788888888887 6 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004324 391 REMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMK-PLMPSYINLTNMYLN----LGMHDRLHLAFS 461 (761)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~----~g~~~~a~~~~~ 461 (761)
++..+.| +..++..|-..|.. .+++++|...|++..+.|.. .+..++..|..+|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988765 67778888888876 78999999999998887621 126788888889988 789999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCC
Q 004324 462 ECLEKCRPNRTIYGIYLESLKNA-G-----NIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 501 (761)
+..+. ..+...+..|...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98763 35666788888888764 3 8999999999999887
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.7e-07 Score=101.24 Aligned_cols=153 Identities=15% Similarity=0.056 Sum_probs=125.7
Q ss_pred HHcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 378 AKIGEFMKSLEIFREMQ--------ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (761)
Q Consensus 378 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 449 (761)
...|++++|++.|++.. +. .+.+...|..+...|.+.|++++|...|++..+.. .-+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788899999888887 32 23356778888888889999999999999888753 3367788888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 004324 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (761)
.|++++|.+.|++..+..+.+...|..+...|.+.|++++ .+.|++..+.+ +-+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999887556678888999999999999999 99999988864 44678888999999999999999999
Q ss_pred HHHHHH
Q 004324 530 YDLMCL 535 (761)
Q Consensus 530 ~~~m~~ 535 (761)
|++..+
T Consensus 557 ~~~al~ 562 (681)
T 2pzi_A 557 LDEVPP 562 (681)
T ss_dssp HHTSCT
T ss_pred HHhhcc
Confidence 988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-07 Score=103.16 Aligned_cols=173 Identities=9% Similarity=-0.017 Sum_probs=145.9
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004324 343 AKEGDVEDAEKTWLRLL--------ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (761)
...|++++|.+.+++.. +... .+...|..+...|.+.|++++|.+.|++..+.. +-+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 4433 356788899999999999999999999998753 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (761)
.|++++|...|++..+.. .-+...+..+..+|.+.|++++ .+.|++..+..+.+...|..+..+|.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999864 2357788999999999999999 99999998766778899999999999999999999999
Q ss_pred HHhhhCCCCCCC-HHHHHHHHHHHHhCCC
Q 004324 495 NHMHSDQTIGVN-TRSCNIILSAYLSSGD 522 (761)
Q Consensus 495 ~~m~~~g~~~p~-~~t~~~li~~~~~~g~ 522 (761)
++..+.+ |+ ...|..+..++...|+
T Consensus 558 ~~al~l~---P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS---RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS---TTHHHHHHHHHHHTC----
T ss_pred HhhcccC---cccHHHHHHHHHHHHccCC
Confidence 9998864 55 5678888888777665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-06 Score=79.68 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-ASV-PAYH 406 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~ 406 (761)
+...+..+...+.+.|++++|...|+.+.+..+... ...+..+..+|.+.|++++|+..|++..+..-. +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556667778888899999998888887654321 356777888888889999999888888765211 111 1343
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH-------------
Q 004324 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI------------- 473 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~------------- 473 (761)
.+..++.+.+.. .+ ..|..+...+...|+.++|...|+.+++..+-+..+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 444444432100 00 001111111222334444444444444322222211
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-H---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 474 ----YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-T---RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 474 ----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.-.+...|.+.|++++|...|+++.+.. |+ . ..+..+..+|.+.|++++|.+.++.+...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1345677889999999999999999863 44 2 56888999999999999999999998864
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-06 Score=80.28 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=94.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~ 452 (761)
+...|.+.|++++|...|++..+.. +-+...|..+...|...|++++|...|++..+.. +-+..++..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7888888899999999998887763 3367788888888888999999999999888854 3357778888887766553
Q ss_pred --HHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 004324 453 --HDRLHLAFSECLEKCRPNRT--IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (761)
Q Consensus 453 --~~~a~~~~~~m~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~l 513 (761)
...+...+.... .|+.. .+..+..++...|++++|...|++..+. .|+......+
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l---~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR---FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT---SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCHHHHHHH
Confidence 334455554443 34433 3444566667788999999999999875 4776544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00013 Score=79.61 Aligned_cols=106 Identities=7% Similarity=-0.039 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC-CHHHHH
Q 004324 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG-CLDEAC 238 (761)
Q Consensus 160 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g-~~~~A~ 238 (761)
+..|+.+|+.+... +|. |+++.|..+|++.... .|++..|..-+.-.. +.+ ..+...
T Consensus 11 i~~aR~vyer~l~~--~P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~---~~~~~~~~i~ 68 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVR---KVSQKKFKLY 68 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHH---HHC----CTH
T ss_pred hHHHHHHHHHHHHH--CCC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHH---HhCchHHHHH
Confidence 66666666666654 221 6788888888877663 467777877777665 333 234566
Q ss_pred HHHHHHHhcCCCCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHc
Q 004324 239 SIYNRMIQLGGYQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS 289 (761)
Q Consensus 239 ~l~~~m~~~~g~~p-~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~ 289 (761)
.+|+.....-|..| +...|...+.-+... ...+|+++.+..+|++.+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~--~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKI--EDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSC--SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHHhC
Confidence 67777665434333 445555555433211 11235777788888887763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.7e-05 Score=75.93 Aligned_cols=218 Identities=9% Similarity=0.041 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CC
Q 004324 313 KERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEG--DVEDAEKTWLRLLESDNGIPTPAFVYKMEAY----AKI---GE 382 (761)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~ 382 (761)
.++|+.++..+... .| +..+|+.--.++...| +++++.+.++.+....++ +..+|+.--..+ .+. ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 35777777777765 33 3455676666777777 899999999998887765 556676544444 445 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--LTESLMKEFVETGMKPLMPSYINLTNMYLNLGM------HD 454 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~------~~ 454 (761)
+++++++++.+.+.. +-|..+|+.-.-.+.+.|.++ ++++.++.+.+.. .-|...|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 889999999988763 447888888877788888877 8999999998865 3467777776666666665 88
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFNHMHSDQ-TIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g-~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (761)
++.+.++.++...+-|...|+-+-..+.+.|+..+ +..++++....+ .-+.+...+..+...|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 89999998887778899999999999999888444 556777665532 0134778899999999999999999999999
Q ss_pred HHH
Q 004324 533 MCL 535 (761)
Q Consensus 533 m~~ 535 (761)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-05 Score=78.33 Aligned_cols=178 Identities=8% Similarity=0.011 Sum_probs=122.0
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHH
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFE-EG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYAK 379 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~ 379 (761)
+..+...|++++|...|+++...... |. ...+..+..+|.+.|++++|...|+.+.+..+.... .++..+..+|.+
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 46678889999999999999876322 21 357788899999999999999999999987654222 244445555554
Q ss_pred ------------------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004324 380 ------------------IGEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440 (761)
Q Consensus 380 ------------------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 440 (761)
.|+.++|...|+++.+. .|+. ..+.+... . ..+...+. ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~--------~~~ 150 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLA--------KYE 150 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHH--------HHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHH--------HHH
Confidence 35666777777766654 2222 22211110 0 00000000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
..+...|.+.|++++|...|+.+++..+.+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 3456778899999999999999987444343 578889999999999999999999988865
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-06 Score=95.33 Aligned_cols=153 Identities=7% Similarity=-0.016 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (761)
|++++|.+.+++..+.... +...|..+...|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5556666666665554332 45556666666666666666666666665542 224555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhCC
Q 004324 426 KEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---GNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 426 ~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g 501 (761)
++..+.. ..+...+..+..+|.+.|++++|.+.|++..+..+.+...+..+...|... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 6666643 224556666666667777777777777666654445566677777777777 77777777777766654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-06 Score=94.88 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=121.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|++++|.+.|++..+.. +-+...|..+...|.+.|++++|.+.+++..+.. ..+..++..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887652 3357889999999999999999999999999854 34578999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHc
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS---GDFVKAEKIYDLMCLK 536 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~ 536 (761)
+++..+..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988666788999999999999999999999999998864 44678999999999999 9999999999999875
Q ss_pred C
Q 004324 537 K 537 (761)
Q Consensus 537 g 537 (761)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-06 Score=85.53 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI-IEL 411 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~ 411 (761)
..+..+...+.+.|++++|.+.|++..+..+. +...+..+...|.+.|++++|..+|++.... .|+....... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 34445555555666666666666666555433 4455555666666666666666666655433 2333222111 112
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhcCCHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~~~~~li~~~~~~g~~~~ 489 (761)
+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+.-+.+ ...+..|+..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 334444444444444444432 1233344444444444444444444444443311111 3334444444444444444
Q ss_pred HHHHHH
Q 004324 490 AEEIFN 495 (761)
Q Consensus 490 A~~l~~ 495 (761)
|...|+
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.2e-05 Score=76.77 Aligned_cols=234 Identities=7% Similarity=-0.014 Sum_probs=177.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 004324 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG--EFMKSLEIFREMQERLGSASVPAYHKIIELL----CKA---E 416 (761)
Q Consensus 346 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g 416 (761)
..-++|.++++.++..++. +..+|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 4446899999999988765 5677888777888888 9999999999998763 23556676554444 455 7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC------HH
Q 004324 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD--RLHLAFSECLEKCRPNRTIYGIYLESLKNAGN------IE 488 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~------~~ 488 (761)
++++++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++.+.++++.+.-+.|...|+.....+.+.|+ ++
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8899999999999864 447788888777788888887 89999999988667889999888887777776 89
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCC
Q 004324 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK-AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (761)
++++.++++.... +-|...|+-+-..+.+.|+..+ +..+..++.+.+ ..++.
T Consensus 204 eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------ 256 (306)
T 3dra_A 204 EELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-KDQVT------------------------ 256 (306)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-GTEES------------------------
T ss_pred HHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-CCCCC------------------------
Confidence 9999999988875 5688899888888888887443 444555554321 00111
Q ss_pred chhhHHhHHHHHhhhhhhhhhhhHHHHHHH--h-hccccchhhHHHHHH
Q 004324 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--F-QFNENSRMHSVLRRY 613 (761)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~-~l~p~~~~~~~~l~~ 613 (761)
++..+..+...+...|+.++|.++++ . +++|....++...+.
T Consensus 257 ----s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 257 ----SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 25667777788888999999999999 4 379998877766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=80.20 Aligned_cols=160 Identities=10% Similarity=0.040 Sum_probs=90.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc
Q 004324 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNL 450 (761)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~ 450 (761)
.+...+.+.|++++|...|++..+.. +-+...|..+...+.+.|++++|...++...... |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34444555555555555555543321 1234445555555555555555555555544422 222222111111 1111
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
+....|...+++..+..+.+...+..+...|...|++++|...|+++.+...-..+...+..+...|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 12223566666666544556778888888888888888888888887775410112457777788888888888888888
Q ss_pred HHHH
Q 004324 531 DLMC 534 (761)
Q Consensus 531 ~~m~ 534 (761)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-05 Score=82.70 Aligned_cols=197 Identities=9% Similarity=0.021 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK-EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
.|++++|.+++++..+.-- .. +.+ .+++++|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4567888888887665311 11 112 47777777777654 567888999999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004324 389 IFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG--M-KPL--MPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 389 ~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~-~pd--~~t~~~li~~~~~~g~~~~a~~ 458 (761)
.|.+..+. |-.+ -..+|+.+...|.+.|++++|...|++..+.- . .+. ..+++.+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99987543 1111 13478888999999999999999999877631 1 121 4578888889988 99999999
Q ss_pred HHHHHHhCCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhCCCHHHHH
Q 004324 459 AFSECLEKCR--P----NRTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 459 ~~~~m~~~~~--p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~~~li~~~~~~g~~~~A~ 527 (761)
.|++..+..+ . ...+++.+...|.+.|++++|+..|++.... + ..+. ..++..+...+...|++++|.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999875111 1 1468889999999999999999999998763 2 1111 236777778888899999999
Q ss_pred HHHHHHH
Q 004324 528 KIYDLMC 534 (761)
Q Consensus 528 ~~~~~m~ 534 (761)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.5e-06 Score=85.45 Aligned_cols=164 Identities=8% Similarity=-0.013 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-H
Q 004324 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL-T 444 (761)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-i 444 (761)
+...+..+...+.+.|++++|...|++..... +-+...+..+...+.+.|++++|..++++.... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 45667778889999999999999999998762 336778899999999999999999999988765 4554433332 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHhCC
Q 004324 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSAYLSSG 521 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~---~~t~~~li~~~~~~g 521 (761)
..+...+..+.|...+++..+..+.+...+..+...|...|++++|...|+++.+.. |+ ...+..++..|...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~---p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD---LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---cccccchHHHHHHHHHHHcC
Confidence 336677888889999999887667889999999999999999999999999999864 43 678999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 004324 522 DFVKAEKIYDLMCL 535 (761)
Q Consensus 522 ~~~~A~~~~~~m~~ 535 (761)
+.++|...|++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999987653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=77.42 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=35.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~ 453 (761)
...|...|++++|.+.|++. +.|+...|..+...|.+.|++++|...+++..+.. +.+..++..+..+|...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33444444444444444433 12344444444444444444444444444444322 12233344444444444444
Q ss_pred HHHHHHHHHHH
Q 004324 454 DRLHLAFSECL 464 (761)
Q Consensus 454 ~~a~~~~~~m~ 464 (761)
++|...|+...
T Consensus 88 ~~A~~~~~~al 98 (213)
T 1hh8_A 88 DLAIKDLKEAL 98 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.9e-06 Score=77.63 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
..+..+...+...|++++|...|++. +.|+..++..+...|.+.|++++|...|++..+..+.+...|..+...|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556777888999999999999876 46788999999999999999999999999998856778899999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 483 NAGNIEKAEEIFNHMHSDQTIGVNT----------------RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g~~~p~~----------------~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
..|++++|.+.|++..+.. +.+. ..|..+...|.+.|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999998853 2222 78889999999999999999999999853
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-06 Score=77.83 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 004324 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL-LC 413 (761)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~ 413 (761)
+......+.+.|++++|...++...+..+. +...+..+...|.+.|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 334556677788888888888877765533 56777888888888888888888888775542 343333222111 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
..+...+|...+++..+.. +-+...+..+...|...|++++|...|.++.+..+ .+...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223334677777777643 22577888888888888888888888888876322 23568888888888889888888
Q ss_pred HHHHHhhh
Q 004324 492 EIFNHMHS 499 (761)
Q Consensus 492 ~l~~~m~~ 499 (761)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-06 Score=77.23 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=21.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
+...|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...|++..+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3333444444444444444433321 11233333333344444444444444433333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-05 Score=72.32 Aligned_cols=129 Identities=12% Similarity=-0.042 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (761)
..|..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...+.+..+..+.+..+|..+...|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 445566666777777777777777777643 3356677777777888888888888888877655667788888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHH
Q 004324 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNI--ILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~--li~~~~~~g~~~~A~~~~~~m~ 534 (761)
..|++++|.+.|++..... +.+...+.. +...+.+.|++++|.+.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8999999999998888763 334555533 3344777888888888888765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.9e-05 Score=77.08 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=120.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 004324 373 KMEAYAKIGEFMKSLEIFREMQERLG-SASV----PAYHKIIELLCKAEETELTESLMKEFVETGMK-PL----MPSYIN 442 (761)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ 442 (761)
.+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778888999999999988876421 2221 12334666666777899999999998873222 23 346888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh---CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHH
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLE---KC---RPN-RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSC 510 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~---~~---~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-~~t~ 510 (761)
+...|...|++++|...|+++.+ .. .+. ..+|..+...|.+.|++++|.+.+++..+. + ..+. ..+|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-cHHHHHHHH
Confidence 99999999999999999999874 11 122 337888999999999999999999887642 2 1222 6789
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHH
Q 004324 511 NIILSAYLSSGD-FVKAEKIYDLMCL 535 (761)
Q Consensus 511 ~~li~~~~~~g~-~~~A~~~~~~m~~ 535 (761)
..+...|.+.|+ +++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-05 Score=67.31 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|..+...+...|++++|.++++++.+.. +.+..++..+...|.+.|++++|..+|+.+.+..+.+..++..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 3333333344444444444444433321 112333333333444444444444444443332233344444444444444
Q ss_pred CCHHHHHHHHHHhhh
Q 004324 485 GNIEKAEEIFNHMHS 499 (761)
Q Consensus 485 g~~~~A~~l~~~m~~ 499 (761)
|++++|...|+++..
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8.1e-05 Score=75.46 Aligned_cols=163 Identities=7% Similarity=0.019 Sum_probs=125.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 004324 337 SVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT----PAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS----VPAYH 406 (761)
Q Consensus 337 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 406 (761)
..+..+...|++++|.+++++..+.... ++. ..+..+...|...|++++|...|++..+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999998875432 221 13445677777788999999999999873222 23 33689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCC-HHHH
Q 004324 407 KIIELLCKAEETELTESLMKEFVE----T-GMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPN-RTIY 474 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~----~-g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~-~~~~ 474 (761)
.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+ +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999885 1 22222 34788999999999999999999998874 22222 6789
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHhhh
Q 004324 475 GIYLESLKNAG-NIEKAEEIFNHMHS 499 (761)
Q Consensus 475 ~~li~~~~~~g-~~~~A~~l~~~m~~ 499 (761)
..+...|.+.| .+++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999 56999999887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.2e-05 Score=76.89 Aligned_cols=167 Identities=10% Similarity=-0.035 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-----PAYHKIIELLCKAEETELTESLMKEFVETGM---KPL--MP 438 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~ 438 (761)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777777777777777766554221111 1233445556677788888888888775321 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCC-CH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ---TIGV-NT 507 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~~p-~~ 507 (761)
+++.+...|...|++++|...|++..+ ..+.+ ..+|+.+...|.+.|++++|...+++..... .... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888888888999999888888773 22221 2588899999999999999999999876531 0111 16
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 004324 508 RSCNIILSAYLSSGDFVKA-EKIYDLMCL 535 (761)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A-~~~~~~m~~ 535 (761)
.+|..+...|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7888999999999999999 777887663
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-05 Score=65.58 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.|..+...|...|++++|.++|+++.+.. +.+..+|..+...+...|++++|..+++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1233444444444444455555555544444432 223444444555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
..|++++|...|+++.+..+.+...+..+...+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 555555555555554442233344444443333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.3e-06 Score=70.67 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+......|.+.|++++|.+.|++.++..+.+..+|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 3455555566666666666666666555444555666666666666666666666666655543 23455566666666
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (761)
...|++++|++.|++.++
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-05 Score=69.66 Aligned_cols=128 Identities=11% Similarity=0.101 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.|..+...|...|++++|...|.+..+.. +.+..+|..+...+...|++++|...+++..+.. +.+..++..+...|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555556666666666666555432 2245555556666666666666666666665542 234555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHhh
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIY--LESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~l~~~m~ 498 (761)
..|++++|...|++..+..+.+...+..+ +..+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666665334444444333 333556677777777766543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00047 Score=70.55 Aligned_cols=237 Identities=10% Similarity=0.000 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHH
Q 004324 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG-DVEDAEK 353 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~ 353 (761)
++.+|...+..+++.+. ..++|+++++++...... +..+|+.--.++...| .++++.+
T Consensus 52 ~y~~~~~~~r~~~~~~e--------------------~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~ 110 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEE--------------------KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELR 110 (349)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHH
Confidence 56666666666655442 245677888887765322 4555676666666777 5889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHH
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKI-G-EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--------LTES 423 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~~ 423 (761)
+++.+....++ +..+|+.--..+.+. + +.++++++++.+.+.. +-|..+|+--.-.+.+.|..+ ++++
T Consensus 111 ~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 111 LMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp HHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 99998888765 677888776666666 6 7889999998888753 337777776655555555555 8888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH---------
Q 004324 424 LMKEFVETGMKPLMPSYINLTNMYLNLGM-------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI--------- 487 (761)
Q Consensus 424 l~~~m~~~g~~pd~~t~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~--------- 487 (761)
.++++.+.. .-|..+|+.....+.+.+. ++++.+.+.+.+...+-|...|+-+-..+.+.|+.
T Consensus 189 ~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 189 WCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 888888865 3477788887777777775 67888888888876778899999888888777753
Q ss_pred -----------HHHHHHHHHhhhCC----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 488 -----------EKAEEIFNHMHSDQ----TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 488 -----------~~A~~l~~~m~~~g----~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
....+...++...+ .-.+....+..|...|...|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34444444444331 0136788899999999999999999999999975
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-05 Score=69.39 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
...+..+...|.+.|++++|...|+...+..+.+...|..+..+|...|++++|...|++..... +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 45677888889999999999999999988667789999999999999999999999999998864 4467889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCccChH
Q 004324 517 YLSSGDFVKAEKIYDLMCLKKYEIESA 543 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~~~ 543 (761)
|.+.|++++|+..|++..+.. |++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999998643 5544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.6e-05 Score=66.49 Aligned_cols=115 Identities=13% Similarity=-0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+....+..+.+...|..+...|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444444444555544444444432 12344444444445555555555555555444333344555555555555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC
Q 004324 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g 521 (761)
.|++++|.+.|++..... +.+...+..+...+.+.|
T Consensus 93 ~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHh
Confidence 555555555555555432 223444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.6e-05 Score=73.80 Aligned_cols=63 Identities=5% Similarity=-0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+...|...|++++|...+++... .+....-..++..+...|...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445555555556666666665555442 110000122345555666666666666666666554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00027 Score=71.51 Aligned_cols=166 Identities=8% Similarity=0.025 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--H
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-----PAFVYKMEAYAKIGEFMKSLEIFREMQERL---GSAS--V 402 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~ 402 (761)
..+...+..+...|++++|.+.+....+....... ..+..+...|...|++++|...|.+..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44556778889999999999999888876433211 224446667788899999999999887532 1122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-C
Q 004324 403 PAYHKIIELLCKAEETELTESLMKEFVET-GMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRP-N 470 (761)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p-~ 470 (761)
.+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|.+.|++++|...+++..+ +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58899999999999999999999998731 11222 25889999999999999999999999874 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 004324 471 RTIYGIYLESLKNAGNIEKA-EEIFNHMH 498 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 498 (761)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67889999999999999999 77777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-05 Score=67.34 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++..+...|...|++++|...+++..+..+.+...|..+...|.+.|++++|.+.|++..+
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333333444444444444443332223344444444444444444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.4e-05 Score=71.55 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=118.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 004324 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAE 416 (761)
Q Consensus 342 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g 416 (761)
....|++++|.++++.+.. .......++..+...|...|++++|...|++.... +..+ ...+++.+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3468999999996655543 33335678899999999999999999999987652 1122 3456788888999999
Q ss_pred CHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhc
Q 004324 417 ETELTESLMKEFVET----GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNA 484 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~----g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~ 484 (761)
++++|...+++..+. +-.| ...++..+...|...|++++|...+++..+ .-..+ ..++..+...|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999998763 2111 245678889999999999999999999874 11122 23467888999999
Q ss_pred CCHHHHHHHHHHhhhC
Q 004324 485 GNIEKAEEIFNHMHSD 500 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (761)
|++++|.+.+++..+.
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0048 Score=67.26 Aligned_cols=355 Identities=12% Similarity=0.053 Sum_probs=219.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHhcC-CCCCC
Q 004324 158 RENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERK-FAKCRDIFDDIINQ-GRV-PSEMTFHILIVAYLSA-PVQGC 233 (761)
Q Consensus 158 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~-g~~-pd~~~~~~li~~~~~~-~~~g~ 233 (761)
|.++.+.++|+..+.. .|++.+|...+....+.+. .+....+|+..... |.. ++...|...+.-+... ..+++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7789999999999874 3588899998888877763 46677888876653 433 3677888888765410 01356
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCC--------CchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG--------LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~--------~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 305 (761)
.+.+..+|++.... ...--...|..... +-...+. ...+.+..|..+++.+...-...+...+..++...
T Consensus 105 ~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 105 IEKIRNGYMRALQT-PMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHTS-CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 88899999988863 11111111211111 0000000 00013344555555443210001122333332211
Q ss_pred hhccCC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004324 306 SYQDNI-----DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (761)
Q Consensus 306 ~~~~~g-----~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 380 (761)
--...+ ..+++..+|+++.... .-+...|...+.-+.+.|+.+.|..++++.... + .+...|. .|+..
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhh
Confidence 100001 1356778899888753 345778888888888999999999999999988 3 2333333 34443
Q ss_pred CChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERL---------GSA---SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
...++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|+.. +.. ..+...|......-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 232322 33333210 001 1245777777777788999999999999 321 234445543333322
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004324 449 NLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 449 ~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (761)
..+ +.+.|..+|+...+.++.+...|...++...+.|+.+.|..+|+...+ ....|...+.--...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHH
Confidence 333 699999999999885555566788889988999999999999999832 5778988888888899999999
Q ss_pred HHHHHHHH
Q 004324 528 KIYDLMCL 535 (761)
Q Consensus 528 ~~~~~m~~ 535 (761)
++++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.2e-05 Score=64.56 Aligned_cols=116 Identities=10% Similarity=-0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...++...+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444555555555555555555554431 2234445555555555555555555555555432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (761)
+.|++++|...|+...+..+.+...+..+...+.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55666666665555554333445555555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-05 Score=79.21 Aligned_cols=97 Identities=16% Similarity=0.050 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
..+|..+..+|.+.|++++|...+++.++..+.+...|..+..+|...|++++|...|++..+.. +-+...+..+...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46778888888888888888888888887556788889999999999999999999999988864 4467788888888
Q ss_pred HHhCCCHHHH-HHHHHHHHH
Q 004324 517 YLSSGDFVKA-EKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A-~~~~~~m~~ 535 (761)
+.+.|+.++| .++|++|..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8899998888 557777763
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=72.41 Aligned_cols=95 Identities=13% Similarity=-0.002 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+..+...+...|++++|...|....+..+.+...|..+..+|...|++++|...|++..... +.+...|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 3444455555555555555555555554334455555555555555555555555555555432 22344555555555
Q ss_pred HhCCCHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~ 534 (761)
...|++++|.+.|++..
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-05 Score=74.97 Aligned_cols=187 Identities=7% Similarity=-0.093 Sum_probs=116.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCC---------------
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYK-------MEAYAKIGEFMKSLEIFREMQERLGSAS--------------- 401 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 401 (761)
..++...|.+.|.++.+..+. ....|+.+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456777777777777766544 45666665 4555555555555544443322 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--HH
Q 004324 402 -------VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RT 472 (761)
Q Consensus 402 -------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~ 472 (761)
...+-.....+...|++++|.++|..+...+ |+......+...|.+.+++++|+..|....+...|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123344556677777777777777766533 544455566667777888888888887554311111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
.+..+..++.+.|++++|+..|++..... ..|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66777788888888888888888876432 3243 235566667778888888888888888864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=9.3e-05 Score=64.22 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|...-..|.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|...|++.++..+.+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 4444445555555555555555555432 224455555555555555555555555555543344556666666666666
Q ss_pred CCHHHHHHHHHHhhhC
Q 004324 485 GNIEKAEEIFNHMHSD 500 (761)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (761)
|++++|.+.|++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-05 Score=76.31 Aligned_cols=41 Identities=5% Similarity=-0.035 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHH--hhccccchhhHHHHHHHHHhh-hhccCCCC
Q 004324 586 ESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY-HEWLHPSF 626 (761)
Q Consensus 586 ~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~-g~~~~a~~ 626 (761)
.|+.++|.+.++ ++++|++......+..++.+. +.+++|..
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 578888887776 777887766666666666655 44444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-05 Score=79.83 Aligned_cols=193 Identities=9% Similarity=-0.048 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..+...+.+.|++++|...|+...+..+. +...|..+...|.+.|++++|...+++..+.. +-+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556777778888889999999999888877543 67788888888899999999999998887652 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (761)
+|...|++++|...|++..+.. |+. ..+...+....+ ...+...........+.+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8899999999999888877632 110 011111111111 1111111111112345555555555333 2689999
Q ss_pred HHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhC-CCHHHHHHHHHHHHH
Q 004324 490 AEEIFNHMHSDQTIGVNTR-SCNIILSAYLSS-GDFVKAEKIYDLMCL 535 (761)
Q Consensus 490 A~~l~~~m~~~g~~~p~~~-t~~~li~~~~~~-g~~~~A~~~~~~m~~ 535 (761)
|.+.+++..+.. |+.. ....+-..+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH---EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT---SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999998888753 5543 333443444444 668899999998875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.6e-05 Score=64.80 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~ 447 (761)
..|..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|...+++..+.. ..+...+..+..+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 344444444555555555555555444321 1234444444445555555555555555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
.+.|++++|.+.|++..+..+.+...+..+...+.+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 5555555555555555442223334444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.1e-05 Score=71.70 Aligned_cols=119 Identities=10% Similarity=0.137 Sum_probs=74.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 004324 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNI--EKA 490 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~--~~A 490 (761)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+..+.+...|..+... |...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555666666555542 23455666666666666666666666666655334456666666666 6677776 777
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 491 ~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...|++..... +-+...|..+...|...|++++|...|++..+
T Consensus 101 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777653 33466677777777777777777777777775
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00012 Score=72.39 Aligned_cols=193 Identities=9% Similarity=-0.033 Sum_probs=140.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHh------------CCCC-----
Q 004324 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSV-------LRVCAKEGDVEDAEKTWLRLLE------------SDNG----- 364 (761)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~------------~g~~----- 364 (761)
..++...|.+.|.+..+.... ....|..+ ...+.+.++..++...+..-.+ .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 468899999999999886322 45667766 4556666666666555555444 1210
Q ss_pred ---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHH
Q 004324 365 ---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPS 439 (761)
Q Consensus 365 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t 439 (761)
--...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 002344557788999999999999999887643 554466666678899999999999998554321 111 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCR-PN--RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~ 508 (761)
+..+..++...|++++|+..|++...+.. |. ......+..++.+.|+.++|..+|+++.... |+..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~---P~~~ 242 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH---PEPK 242 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---CCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHH
Confidence 78889999999999999999999986433 53 4477788889999999999999999999864 6633
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.7e-05 Score=66.92 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCC----HHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IGVN----TRSCNI 512 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~p~----~~t~~~ 512 (761)
.++..|...|.+.|++++|...|++.++-.+.+..+|+.+..+|.+.|++++|++.|++..+... ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35566777777888888888888887765566778888888888888888888888888765320 0111 246777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 548 (761)
+..+|...|++++|++.|++.++ ..|+|++...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 77888888999999999988875 34677664443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.05 E-value=8e-05 Score=66.91 Aligned_cols=96 Identities=9% Similarity=-0.058 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.|..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+..+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 44455555556666666666666665542 22455566666666666666666666666655344556666666677777
Q ss_pred cCCHHHHHHHHHHhhhC
Q 004324 484 AGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (761)
.|++++|...|++..+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.3e-05 Score=70.71 Aligned_cols=121 Identities=9% Similarity=0.043 Sum_probs=69.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGMH--DR 455 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~-~~~~g~~--~~ 455 (761)
..|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554432 2244555556666666666666666666655532 2244555555555 5566665 66
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
|...|+...+..+.+...|..+...|...|++++|...|++.....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 6666666665444556667777777777777777777777776653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00011 Score=76.02 Aligned_cols=146 Identities=9% Similarity=-0.001 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
+...+..+...|.+.|++++|.+.|++..+........ ..+.+.++ ... ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~----~~~----~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKA----QAL----RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHH----HHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHH----HHH----HHHHHHHHHH
Confidence 35667777777788888888888887777665332100 00000000 000 1344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
+|.+.|++++|...+++.++.. +.+..++..+..+|...|++++|...|++..+..+.+..++..+...+.+.|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665542 224556666666666666666666666666654455666677777777777777766
Q ss_pred -HHHHHHhh
Q 004324 491 -EEIFNHMH 498 (761)
Q Consensus 491 -~~l~~~m~ 498 (761)
..+|+.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=70.51 Aligned_cols=110 Identities=11% Similarity=-0.012 Sum_probs=92.7
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004324 389 IFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (761)
Q Consensus 389 ~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (761)
.|++.... .| +...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++..+..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44444432 23 44567778889999999999999999999864 4478889999999999999999999999998855
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
+.+...|..+..+|...|++++|.+.|++..+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6788899999999999999999999999988753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00027 Score=59.54 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 004324 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (761)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (761)
|..+...+...|++++|...++...... +.+...+..+...|...|++++|...+++..+..+.+...|..+...|...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3333334444444444444444443321 112333333444444444444444444444332223344444444444444
Q ss_pred CCHHHHHHHHHHhhh
Q 004324 485 GNIEKAEEIFNHMHS 499 (761)
Q Consensus 485 g~~~~A~~l~~~m~~ 499 (761)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0041 Score=63.26 Aligned_cols=188 Identities=8% Similarity=-0.012 Sum_probs=134.8
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 343 AKEGDVE-DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 343 ~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
.+.|.+. +|.++++.+...++. +..+|+.--..+...|. +++++.+++.+.... +-+..+|+.---.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455554 678888888877654 45566653222222222 577888888887653 3377778777777
Q ss_pred HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----
Q 004324 412 LCKAE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---- 484 (761)
Q Consensus 412 ~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---- 484 (761)
+.+.+ .+++++.+++.+.+.. .-|..+|+.-.-.+.+.|. .+++.+.+..+.+..+-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 77777 4788888888888865 3467777777777777777 58888888888876678888888877776665
Q ss_pred ----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHH
Q 004324 485 ----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-----------GDFVKAEKIYDLMCL 535 (761)
Q Consensus 485 ----------g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 535 (761)
+.++++++.+++..... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 45889999999998874 55788887666666655 457788888888885
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=75.83 Aligned_cols=130 Identities=15% Similarity=-0.049 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGM-KPL--------------MPSYINLTNMYLNLGMHDRLHLAFSECLEKCR 468 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 468 (761)
.+..+...+.+.|++++|...|++..+..- .|+ ..++..+..+|.+.|++++|...++...+..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344445555555555555555555554211 110 25666777777777777777777777776445
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE-KIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~ 535 (761)
.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|+..++. ..|..|..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777777777778888888888887777653 335566666666666666666665 45555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0013 Score=67.25 Aligned_cols=257 Identities=10% Similarity=0.032 Sum_probs=170.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG-EFMKSLEIFREMQERLGSASVPAYHKIIELLCKA-E-ETEL 420 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-~~~~ 420 (761)
+.+..++|.++++.+...++. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.--..+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 345557899999999998765 6778888777777788 5999999999998764 34777888877777776 7 8899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC------
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD--------RLHLAFSECLEKCRPNRTIYGIYLESLKNAGN------ 486 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~------ 486 (761)
++++++.+.+.. .-|..+|+--.-.+.+.+..+ ++.+.++++.+..+-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 999999998754 336777776655555555555 88889998888667899999999888888876
Q ss_pred -HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccc--c
Q 004324 487 -IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP--V 563 (761)
Q Consensus 487 -~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~--~ 563 (761)
++++++.++++.... +-|...|+-+-..+.+.|+...-+ +..--...+-.+++.. ......+.+++... .
T Consensus 223 ~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPI-LPAILPYTASKLNPDI----ETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGG-HHHHGGGTC------------------CCCCC-CCCS
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccc-cccccccccccccccc----hhHHHHHHHHHhccccc
Confidence 789999999988874 457888888777777766531000 0000000011111110 00111111111100 0
Q ss_pred cCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH---hhccccchhhHHHHHH
Q 004324 564 SLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR---FQFNENSRMHSVLRRY 613 (761)
Q Consensus 564 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~---~~l~p~~~~~~~~l~~ 613 (761)
.... +...++.-|...|...|+.++|..+++ -+.+|-...++.....
T Consensus 296 ~~~~---~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 296 DTPL---PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 0011 136677778888888899899998888 3678877766665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=75.38 Aligned_cols=133 Identities=10% Similarity=0.077 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004324 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-A--------------SVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (761)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--------------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (761)
..+..+...|.+.|++++|...|++.....-. | ....|..+..+|.+.|++++|...++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455556666666666666666666543111 1 02567777778888888888888888887753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhCC
Q 004324 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE-EIFNHMHSDQ 501 (761)
Q Consensus 433 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g 501 (761)
+.+..++..+..+|...|++++|...|++..+..+.+...+..+...+...|+.+++. ..|..|...+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456778888888888888888888888887655567778888888888777777766 5566665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.3e-05 Score=68.70 Aligned_cols=96 Identities=14% Similarity=-0.059 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+..+...+.+.|++++|...|....+..+.+...|..+..+|.+.|++++|...|++..... +.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 3445555666667777777777777665445566667777777777777777777777766653 33455666666677
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (761)
...|++++|.+.|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0087 Score=60.82 Aligned_cols=186 Identities=6% Similarity=-0.025 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004324 348 VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE--FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE-TELTESL 424 (761)
Q Consensus 348 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~l 424 (761)
++++..+++.+....++ +..+|+.-...+.+.|+ +++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56777788887777654 67777776666667773 778888888887764 3377777777777777777 5788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc------
Q 004324 425 MKEFVETGMKPLMPSYINLTNMYLNL--------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA------ 484 (761)
Q Consensus 425 ~~~m~~~g~~pd~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~------ 484 (761)
+..+++.. .-|..+|+.....+.+. +.++++.+.+.......+-|..+|+-+--.+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 88888765 34666776665555554 4577888888888876678888998766666655
Q ss_pred -----CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHcCCccChHH
Q 004324 485 -----GNIEKAEEIFNHMHSDQTIGVNTRSCNIILS-----AYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (761)
Q Consensus 485 -----g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 544 (761)
+.++++++.++++.+.. ||. .|..+-. +....|..+++..++.++++ +||.-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~Dp~r 308 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA----VDPMR 308 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH----HCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH----hCcch
Confidence 46899999999999854 664 3432222 22246778899999999986 67764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00013 Score=62.90 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCC----HHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IGVN----TRSCNI 512 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~p~----~~t~~~ 512 (761)
..+..+...|...|++++|...|....+..+.+...+..+...|...|++++|...|++...... ..++ ..+|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666666667777777777666654455666777777777777777777777777665420 0111 566777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccChHHH
Q 004324 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (761)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 545 (761)
+...|.+.|++++|.+.|++..+.. |++...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 115 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVL 115 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHH
Confidence 7777777888888888887777532 455443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.6e-05 Score=62.08 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILS 515 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p--~~~t~~~li~ 515 (761)
..+..+...+...|++++|...|++..+..+.+...|..+...|...|++++|.+.|++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 3445555666666677777777766665445566677777777777777777777777777653 23 4667777777
Q ss_pred HHHhC-CCHHHHHHHHHHHHH
Q 004324 516 AYLSS-GDFVKAEKIYDLMCL 535 (761)
Q Consensus 516 ~~~~~-g~~~~A~~~~~~m~~ 535 (761)
.|.+. |++++|.+.+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 77777 777777777777764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00021 Score=61.70 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
..+..+...+.+.|++++|...|.+..+..+.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 4556666777778888888888887776556677888888888888888888888888888764 34577888888888
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 004324 518 LSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (761)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888888875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00023 Score=62.34 Aligned_cols=99 Identities=8% Similarity=-0.049 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 004324 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (761)
Q Consensus 435 pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li 514 (761)
.+...+..+...|.+.|++++|...|....+..+.+...|..+...|...|++++|...|++..... +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 3566777777888888888888888888776556678888888888889999999999998888764 44677888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 889999999999999988875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00058 Score=57.41 Aligned_cols=106 Identities=11% Similarity=0.016 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 448 (761)
.+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555554431 1234445555555555555555555555555432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (761)
..|++++|...+....+..+.+...+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5566666665555555433333444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00029 Score=60.80 Aligned_cols=95 Identities=9% Similarity=-0.048 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+..+.+...|..+..+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44455555566666666666666665543 22455666666666666666666666666665444556666677777777
Q ss_pred cCCHHHHHHHHHHhhh
Q 004324 484 AGNIEKAEEIFNHMHS 499 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~ 499 (761)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 7777777777776655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00016 Score=64.21 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|+...+..+.+...|..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456677788999999999999999999864 347888999999999999999999999999986677888999999999
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 004324 482 KNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~ 500 (761)
...|++++|.+.|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00014 Score=62.69 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC----HHHHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK---CRPN----RTIYGI 476 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~~p~----~~~~~~ 476 (761)
.|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+....+. ..++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555555432 223445555555555555555555555555431 1122 556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li 514 (761)
+...|...|++++|.+.|++..+.. |+...+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 6677777777777777777766643 4544444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0002 Score=65.26 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
...+..+...|.+.|++++|...|++.++..+.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 44556666667777777777777777666445567777777777777777777777777777653 3356777777777
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|++++|.+.|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 7777777777777777765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00054 Score=60.60 Aligned_cols=97 Identities=15% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (761)
...|..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...++...+..+.+...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444445555555555444442 233 34444444445555555555555555444223344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..+|...|++++|.+.|++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00016 Score=60.33 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESL 481 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~ 481 (761)
.|..+...+...|++++|...+++..+.. ..+..++..+...|...|++++|...|++..+..+. +...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34445555555666666666666655542 224555666666666666666666666666654344 566777777777
Q ss_pred Hhc-CCHHHHHHHHHHhhhCC
Q 004324 482 KNA-GNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 482 ~~~-g~~~~A~~l~~~m~~~g 501 (761)
.+. |++++|.+.|++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 777 77777777777776653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00033 Score=63.78 Aligned_cols=99 Identities=8% Similarity=-0.052 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (761)
...|..+...+.+.|++++|...|++.++.. .-+...|..+..+|.+.|++++|...|++.++..+.+...|..+...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456666667777777777777777777643 235667777777788888888888888877765566788888888888
Q ss_pred HhcCCHHHHHHHHHHhhhCC
Q 004324 482 KNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~g 501 (761)
...|++++|.+.|++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 88888888888888887753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00052 Score=59.93 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
+...|..+...+...|++++|...|....+.. +.+...+..+..+|...|++++|...++...+..+.+...|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44555555566666666666666666655543 22455666666666666666666666666665344556667777777
Q ss_pred HHhcCCHHHHHHHHHHhhhC
Q 004324 481 LKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~ 500 (761)
|...|++++|...|++....
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777766553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0012 Score=70.62 Aligned_cols=196 Identities=14% Similarity=0.062 Sum_probs=132.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCH
Q 004324 340 RVCAKEGDVEDAEKTWLRLLESDNGIP----------------TPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASV 402 (761)
Q Consensus 340 ~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 402 (761)
..+.+.|++++|.+.|..+.+...... ..++..|...|.+.|++++|.+++..+... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777777766532211 123667888888899999998888876542 111122
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--C
Q 004324 403 P----AYHKIIELLCKAEETELTESLMKEFVE----TGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE---KC--R 468 (761)
Q Consensus 403 ~----t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~ 468 (761)
. ..+.+-..+...|+.++|..++..... .+..+. ..++..|...|...|++++|..++..+.. +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 122233334456788899888887764 233333 45778888999999999999999988764 21 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CC-C-C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 P-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IG-V-N--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~-p-~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+ ...+|..++..|...|++++|..++++...... +. | . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 245788889999999999999999987654210 11 1 1 34667777778889999999998888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0011 Score=57.29 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHH
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGI 476 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~ 476 (761)
++.-+-..+.+.|++++|+..|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++.++ ...++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444555555555555555555555432 22344555555555555555555555555543 11111 235566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~ 510 (761)
+...|...|++++|++.|++.... .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHH
Confidence 666777777777777777776653 3555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0014 Score=72.88 Aligned_cols=171 Identities=9% Similarity=-0.021 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM----------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-- 485 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-- 485 (761)
.++|++.++.+.+.. +-+..+|+.--..+.+.|+ ++++.+.++.+.+..+.+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 355666666666643 1234445544444444454 788888888888766788889988888888888
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhccccc
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG-DFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVS 564 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 564 (761)
++++|++.++++.+.. +-|...|+.-...+.+.| .++++++.++++++. +|.-
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~----~p~n-------------------- 177 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFSN-------------------- 177 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----TCCC--------------------
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCCC--------------------
Confidence 6799999999998875 457888888888888888 888999998888753 2221
Q ss_pred CCCchhhHHhHHHHHhhhhhh--------------hhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhhccC
Q 004324 565 LNLSSEQRENLIGLLLGGLCI--------------ESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (761)
Q Consensus 565 ~~~~~~~~~~~~~~ll~~~~~--------------~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~~~~ 623 (761)
..+|+.....+.. .+.++++.+.+. +.++|++.+.|..+..++.+.++.++
T Consensus 178 --------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 178 --------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp --------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred --------ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2222222222221 366788888877 88999999999999999999888665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0017 Score=69.52 Aligned_cols=193 Identities=7% Similarity=-0.024 Sum_probs=137.3
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--
Q 004324 307 YQDNIDKERISLLKKEMQQAGFEEG----------------KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT-- 367 (761)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-- 367 (761)
+.+.|++++|++.|....+...... ...+..+...|.+.|++++|.+.+..+.+.-.. ++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 3455677888888877766432111 124678899999999999999999887653111 111
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--C-
Q 004324 368 --PAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVET--GMK--P- 435 (761)
Q Consensus 368 --~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~--p- 435 (761)
.+.+.+-..+...|+.++|..++.+... .+..+. ..++..+...|...|++++|..++++.... +.. +
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 1233333444456899999999987753 233333 456788999999999999999999998763 221 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
...++..++..|...|++++|..++++... ....+ ...+..+...+...|++++|...|.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 246788999999999999999999998764 22222 34677778888899999999998887754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00022 Score=64.02 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHH
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTR 508 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~~~ 508 (761)
++..+...|...|++++|...+++..+ .-.++ ..++..+...|...|++++|.+.+++.... +.......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444555555555666666555555443 00111 345666777777778888887777776542 10001134
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667777788888888888888887764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00028 Score=60.61 Aligned_cols=93 Identities=12% Similarity=-0.039 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~ 520 (761)
..+...+.+.|++++|...|+..++..+.+...|..+..++...|++++|+..|++..+.. +-+...|..+...|.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 3445556666777777777777665445567777777777777777777777777776653 33556677777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 004324 521 GDFVKAEKIYDLMCL 535 (761)
Q Consensus 521 g~~~~A~~~~~~m~~ 535 (761)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777663
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0013 Score=57.98 Aligned_cols=97 Identities=16% Similarity=0.054 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP----TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (761)
+...+..+...+...|++++|.+.|++..+.. |+ ...|..+...|.+.|++++|...|++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34445555555555555555555555555543 22 3444455555555555555555555544431 12344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 407 KIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.+..+|...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555555444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0003 Score=63.89 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhh
Q 004324 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIES 587 (761)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 587 (761)
..|..+..+|.+.|++++|+..+++.++ .+|. +..+|..+..++...|
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~----~~p~----------------------------~~~a~~~~g~~~~~~g 111 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLK----REET----------------------------NEKALFRRAKARIAAW 111 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTT----------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCc----------------------------chHHHHHHHHHHHHHh
Confidence 4566666666666666666666666664 2222 1344555555566666
Q ss_pred hhhHHHHHHH--hhccccch-hhHHHHHHHHHhhhhccCCCC
Q 004324 588 DEKRKRHMIR--FQFNENSR-MHSVLRRYLYDQYHEWLHPSF 626 (761)
Q Consensus 588 ~~~~a~~~~~--~~l~p~~~-~~~~~l~~~~~~~g~~~~a~~ 626 (761)
++++|...++ +.++|++. .....+..+..+.++..+..+
T Consensus 112 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k 153 (162)
T 3rkv_A 112 KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR 153 (162)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666 66666665 445555555555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00033 Score=62.81 Aligned_cols=131 Identities=14% Similarity=0.000 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MP 438 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~ 438 (761)
++..+...|...|++++|...|++..+... .++ ..++..+...+...|++++|...+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444445555555555555544432100 001 12444555555556666666665555543110 011 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLE---KCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++..+...|...|++++|...+++..+ ... ....++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666666677777777777766653 111 1134667777788888888888888877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00049 Score=59.02 Aligned_cols=92 Identities=8% Similarity=-0.102 Sum_probs=51.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
+...+.+.|++++|...|+...+.. +.+...+..+..++...|++++|...|++..+..+.+...|..+...|.+.|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3344555555555555555555532 224455555555555566666666666555543344556666666666666666
Q ss_pred HHHHHHHHHhhhC
Q 004324 488 EKAEEIFNHMHSD 500 (761)
Q Consensus 488 ~~A~~l~~~m~~~ 500 (761)
++|...|++..+.
T Consensus 102 ~~A~~~~~~al~~ 114 (121)
T 1hxi_A 102 NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00068 Score=73.41 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
...|..+...|.+.|++++|...|++..+.. |+...+ .-+...+ ...+ ...+|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~~-------~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SESF-------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHHH-------HHHHHHHHHHH
Confidence 4566777777888888888888887776531 111000 0000000 0000 13566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A 526 (761)
|.+.|++++|...+++.++..+.+...|..+..+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776445677778888888888888888888888877753 23455677777777777777766
Q ss_pred H-HHHHHHHH
Q 004324 527 E-KIYDLMCL 535 (761)
Q Consensus 527 ~-~~~~~m~~ 535 (761)
. .++.+|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0011 Score=71.81 Aligned_cols=147 Identities=12% Similarity=0.012 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (761)
....+..+...|.+.|++++|...|++..+....... + .-+... ++... ....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~~----~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASESF----LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHHH----HHHHHHHHHH
Confidence 3567888899999999999999999998875432110 0 000000 11111 2345556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
+|.+.|++++|+..+++.++.. ..+..+|..+..+|...|++++|...|++..+..+.+...|..+...+.+.|+.++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666643 234666677777777777777777777777664455566777777777777777766
Q ss_pred H-HHHHHhhh
Q 004324 491 E-EIFNHMHS 499 (761)
Q Consensus 491 ~-~l~~~m~~ 499 (761)
. .++..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00075 Score=73.47 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=48.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (761)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 458 (761)
+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444444331 1124444444444444455555555544444432 1234444445555555555555555
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004324 459 AFSECLEKCRPNRTIYGIYLES--LKNAGNIEKAEEIFN 495 (761)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 495 (761)
.|++..+..+.+...+..+..+ +.+.|++++|.++++
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555444222222333333333 455555555555555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=62.58 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++..+...|...|++++|...|++..+..+.+..++..+..+|.+.|++++|...|++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432233344444444444444444444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0024 Score=54.88 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=59.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHH
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSA 516 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~---~~t~~~li~~ 516 (761)
+...+...|++++|...|+.+.+..+.+. ..+..+...|.+.|++++|...|++..... +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 44455666667777776666665222233 466667777777777777777777776653 222 4566667777
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777775
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0037 Score=53.63 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHh
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLM---PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKN 483 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~ 483 (761)
..+...|++++|...|+...+..- .+. ..+..+..+|.+.|++++|...|+...+..+.+ ..++..+..+|.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 344455555555555555554321 111 344455555555566666666665555422223 4555666666666
Q ss_pred cCCHHHHHHHHHHhhhC
Q 004324 484 AGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (761)
.|++++|...|++....
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00028 Score=76.93 Aligned_cols=121 Identities=12% Similarity=-0.025 Sum_probs=97.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (761)
+...+.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|.+.+++..+..+.+..+|..+..+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3345667899999999999999863 335889999999999999999999999999986677899999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 004324 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSA--YLSSGDFVKAEKIYD 531 (761)
Q Consensus 488 ~~A~~l~~~m~~~g~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~ 531 (761)
++|.+.|++..+.. +-+...+..+..+ +.+.|++++|+++++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998864 2234455555555 888899999999988
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0018 Score=58.67 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++.++
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345678888888999999999999999888864 45678888888999999999999999998885
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0014 Score=68.57 Aligned_cols=139 Identities=10% Similarity=0.037 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTN 445 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~ 445 (761)
...|..+...|.+.|++++|++.|++..+.- +.. ......+++.. ..| +..+|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~---------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK---------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG---------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH---------HHHHHHHHHHHHHH
Confidence 4567777888888888888888888766520 000 00001111100 111 2456666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
+|.+.|++++|...+++.++..+.+...|..+..+|...|++++|++.|++..+.. +-+...+..+...+.+.++.++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766445566777777777777777777777777776653 2345556666666665555555
Q ss_pred HHH
Q 004324 526 AEK 528 (761)
Q Consensus 526 A~~ 528 (761)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0037 Score=65.38 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...+.+.|++++|.+.|++..+.-. . . ......+++.+ ... -+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~---~-------~~~~~~~~~~~----~~~----~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--G---S-------RAAAEDADGAK----LQP----VALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H---H-------HHHSCHHHHGG----GHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--c---C-------ccccChHHHHH----HHH----HHHHHHHHHHHH
Confidence 66788889999999999999999998876210 0 0 00001111110 000 133455566666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (761)
|.+.|++++|...+++.++.. ..+...+..+..+|...|++++|...|++..+..+.+...+..+...+.+.++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666532 2245566666666666666666666666666544445666666666666666655554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00051 Score=58.41 Aligned_cols=85 Identities=11% Similarity=0.079 Sum_probs=47.0
Q ss_pred cCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004324 345 EGDVEDAEKTWLRLLESDN--GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (761)
.|++++|...|++..+.+. +-+...|..+...|.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666666531 1133455556666666666666666666665542 223455555666666666666666
Q ss_pred HHHHHHHH
Q 004324 423 SLMKEFVE 430 (761)
Q Consensus 423 ~l~~~m~~ 430 (761)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0028 Score=55.69 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004324 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAE 491 (761)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 491 (761)
++.++|.+.|++..+.| .|+.. |...|...+.+++|.++|.+..+ .-+...+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35667777777777766 33332 55556666667777777777665 2456777777777777 67888888
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Q 004324 492 EIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 492 ~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 538 (761)
++|++..+.| +...+..|-..|.. .++.++|.++|++..+.|.
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888777 67777777777777 7788888888888877653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0032 Score=56.15 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRP-------NR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTI 503 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p-------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~ 503 (761)
+......+.+.|++++|...|++.++-.+. +. ..|+.+..++.+.|++++|+..+++..+. +.+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555666666666666666541111 23 38888889999999999999999888874 112
Q ss_pred CCC-HHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 504 GVN-TRSC----NIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 504 ~p~-~~t~----~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|+ ...| ...-.++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 465 4678 8899999999999999999999985
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00073 Score=69.92 Aligned_cols=148 Identities=9% Similarity=-0.003 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (761)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 446 (761)
...+..+...|.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 566778888889999999999999998765 244332 223333444433221 1377888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH-HHhCCCHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA-YLSSGDFVK 525 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~-~~~~g~~~~ 525 (761)
|.+.|++++|...++..++..+.+...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987556788999999999999999999999999988753 2234455544444 334567788
Q ss_pred HHHHHHHHHH
Q 004324 526 AEKIYDLMCL 535 (761)
Q Consensus 526 A~~~~~~m~~ 535 (761)
+.++|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8889988874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.016 Score=64.20 Aligned_cols=174 Identities=9% Similarity=-0.042 Sum_probs=136.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004324 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (761)
Q Consensus 347 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (761)
.-++|.+.++.+.+.++. +..+|+.--..+.+.|+ +++|++.++++.+.. +-+..+|+.---.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346778889888888765 56778776666666666 889999999988764 337778888888888888
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc---------
Q 004324 417 --ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------- 484 (761)
Q Consensus 417 --~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------- 484 (761)
+++++++.++++.+.. .-|..+|+.-...+.+.| ..+++.+.++++.+..+-|..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 6699999999999865 336788888777788888 788999998888887778889998888777763
Q ss_pred -----CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004324 485 -----GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (761)
Q Consensus 485 -----g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~ 525 (761)
+.+++|++.+++..... +-|...|+-+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999888764 4577888888888887777444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0014 Score=67.81 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|+.+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 6678888888999999999999999988764 23221 223334444433221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKA 490 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A 490 (761)
|.+.|++++|...+++.++.. ..+...|..+..+|...|++++|...|++..+..+.+...+..|... ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988854 34678888899999999999999999998876444456666666655 3345677888
Q ss_pred HHHHHHhhhC
Q 004324 491 EEIFNHMHSD 500 (761)
Q Consensus 491 ~~l~~~m~~~ 500 (761)
.++|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0068 Score=65.59 Aligned_cols=124 Identities=10% Similarity=-0.052 Sum_probs=81.1
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC----CHHHHHH
Q 004324 412 LCKAEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRP----NRTIYGI 476 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p----~~~~~~~ 476 (761)
+-..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++.+.++ -..| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666542 12222 45677777777777777777777777653 1222 2446788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
|...|...|++++|+.++++..+ .|.-.|+. .+.+.+-.++...|.+++|+.+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877643 23122333 3445566677788889999999998875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00043 Score=57.78 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..+..+...+...|++++|...|++..+..+.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555433445555555556666666666666666665553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0083 Score=53.43 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEK-------CRPNRTIY----GIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|+.+..++.+.|++++|+..+++.++- .+-+...| .....+|...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666677777766666666653 44456677 8888999999999999999998765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.005 Score=66.63 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=78.8
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQER---LGSA----SVPAYHKIIELLCKAEETELTESLMKEFVET---GMKPL----MPSYI 441 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~ 441 (761)
.+-..|++++|..++++..+. -+.| ...+++.|..+|...|++++|..++++.++. -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344566777777776665432 1111 2345677777777777777777777766541 11222 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 442 NLTNMYLNLGMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|...|...|++++|..++++..+ -.-|+ ..+.+.|-.++...|.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888877777653 12232 33455666777788889999999988876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00093 Score=55.66 Aligned_cols=93 Identities=9% Similarity=-0.029 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------HHHHH
Q 004324 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYG 475 (761)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~ 475 (761)
...|..+...+...|++++|...|++..+.. +.+...+..+..+|.+.|++++|...+++..+..+.+ ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3445555555555666666666666555532 2245555556666666666666666666655432223 44444
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFN 495 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~ 495 (761)
.+..++...|+.++|.+.|+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 45555555555554444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.005 Score=51.75 Aligned_cols=79 Identities=8% Similarity=-0.018 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.|...|++..+..+.+...|..+...|...|++++|...|++..... +.+...|..+...|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666556677888888888888888888888888887764 3456788888888888888888888888877
Q ss_pred H
Q 004324 535 L 535 (761)
Q Consensus 535 ~ 535 (761)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.029 Score=49.05 Aligned_cols=111 Identities=6% Similarity=-0.067 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChH
Q 004324 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVE 349 (761)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~ 349 (761)
++.++|...|++..+.|.. ... +...+...+..++|...|++..+.| +...+..|-..|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a~------lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FGC------LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-THH------HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hhh------HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 3666666666666666522 211 2233444445555666665555543 44555555555555 55555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 004324 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERL 397 (761)
Q Consensus 350 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 397 (761)
+|.+.|+...+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555555554 34455555555555 455555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0091 Score=47.27 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+..+...|...|++++|...|++..+..+.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444444432233444444444555555555555555554444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0074 Score=50.68 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
|...|++..+.. +.+...+..+...|...|++++|...|++..+..+.+...|..+...|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555432 234556666666666666666666666666654445566777777777777777777777776655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.02 Score=45.11 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (761)
.|..+...|.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444445555555555555555544431 12334444444444444555555544444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0083 Score=49.04 Aligned_cols=60 Identities=10% Similarity=-0.033 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004324 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (761)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (761)
..|..+...|.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|++.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333334444444444444444444433332 112333334444444444444444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.01 Score=52.81 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhhhC
Q 004324 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-----------NIEKAEEIFNHMHSD 500 (761)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~ 500 (761)
++|+..|++.++-.+.+..+|..+..+|...| ++++|.+.|++..+.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 45555555555433445555666666665543 566666666666653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.015 Score=47.44 Aligned_cols=65 Identities=12% Similarity=-0.032 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
+...+..+...|.+.|++++|...|++..+..+.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999855667889999999999999999999999988763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0093 Score=53.01 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=67.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 004324 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN----------IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (761)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~ 518 (761)
+.+.+++|.+.++...+.-+.+...|+.+..++...|+ +++|+..|++..+.. +-+..+|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH
Confidence 44567777777777776556677888878777777766 469999999999964 346789999999999
Q ss_pred hCC-----------CHHHHHHHHHHHHH
Q 004324 519 SSG-----------DFVKAEKIYDLMCL 535 (761)
Q Consensus 519 ~~g-----------~~~~A~~~~~~m~~ 535 (761)
..| ++++|++.|++.++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 875 89999999999996
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.055 Score=57.40 Aligned_cols=85 Identities=9% Similarity=-0.080 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRSCNIILSA 516 (761)
Q Consensus 451 g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~-~~t~~~li~~ 516 (761)
|++++|..++++.++ -+.|+ ..+++.|...|...|++++|+.++++... -|.-.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555442 11222 34677777777777777777777776643 2322344 3578888888
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888888764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.15 Score=52.01 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++...
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 346788889888888887899999999999999865 7888888888888999999999999998885
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.15 Score=54.09 Aligned_cols=90 Identities=11% Similarity=-0.069 Sum_probs=63.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHHHH
Q 004324 446 MYLNLGMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRSCN 511 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~-~~t~~ 511 (761)
.+.+.|++++|..++++.++ -+.|+ ..+++.|...|...|++++|+.++++... -|.-.|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456677777777777664 12222 44778888888888888888888887653 2322344 36788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 512 IILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 899999999999999999888764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=1.1 Score=37.88 Aligned_cols=137 Identities=15% Similarity=0.042 Sum_probs=82.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|.+++..++..+.... .+..-||-+|--....-+-+-..++++..-+ -.|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHH
Confidence 35556666666665544 2455555555544444444444444443322 1121 123344433333
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
+-.+ ..+....+..++.+...|+-++-.++..++... -+|+......+..||.+.|+..+|.+++.+..++|.
T Consensus 84 ~~~~----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3332 244556666778888888888888888885444 357777788888888888888888888888888775
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.11 Score=55.03 Aligned_cols=85 Identities=6% Similarity=-0.061 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC---CCC-HHHHHHHHH
Q 004324 415 AEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KC---RPN-RTIYGIYLE 479 (761)
Q Consensus 415 ~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~---~p~-~~~~~~li~ 479 (761)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++ -. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776652 22233 45677888888888888888888887763 12 222 447888899
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 004324 480 SLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~ 499 (761)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.045 Score=44.09 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=28.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 446 MYLNLGMHDRLHLAFSECLEKCRPNRT-IYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.+.+.|++++|...|++..+..+.+.. .|..+...|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555443333444 5555555555555555555555555553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.25 Score=52.43 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=65.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC----CHHH
Q 004324 409 IELLCKAEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRP----NRTI 473 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p----~~~~ 473 (761)
+..+.+.|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|..++.+.++ -..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888888877752 12232 45778888888888888888888887764 1222 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999887654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=1.5 Score=37.10 Aligned_cols=134 Identities=10% Similarity=0.129 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHH
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETEL 420 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~ 420 (761)
-.|.++++.++..+..+.. +..-||.+|--....-+-+-..++++.+-+- -|... .-.++.+|++.+..
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~~-- 90 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNTL-- 90 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTCC--
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcch--
Confidence 4577777777777777654 4556666666666555666666666555332 22211 12344444444322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..-+...++.....|+-++..++...+....+|+....-.+..+|.+.|+..+|.+++.+..++
T Consensus 91 ----------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 91 ----------------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ----------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2334445566667777777777777765556777777777888888888888888888888887
Q ss_pred C
Q 004324 501 Q 501 (761)
Q Consensus 501 g 501 (761)
|
T Consensus 155 G 155 (172)
T 1wy6_A 155 G 155 (172)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.082 Score=42.46 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMP-SYINLTNMYLNLGMHDRLHLAFSECLE 465 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (761)
+.+.|++++|...+++..+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444432 11233 444444444455555555555554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.36 Score=56.00 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004324 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (761)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 450 (761)
..++..+.+.|..++|+++.+.-.. -.......|++++|.++.+.+ .+...|..|..++.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555555555555554421111 012233455666655554321 2445566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 004324 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (761)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (761)
++++.|.+.|..+.. |..+...|...|+.+...++-+.....| + ++.-..+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~----~---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTG----K---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTT----C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcC----c---hHHHHHHHHHcCCHHHHHHHH
Confidence 666666666655431 2233334444555554444444444443 1 122233344455555555555
Q ss_pred HHH
Q 004324 531 DLM 533 (761)
Q Consensus 531 ~~m 533 (761)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.77 Score=46.80 Aligned_cols=142 Identities=11% Similarity=-0.021 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHHHhhccCCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh---cC-----ChHHHHHHHHHHHh
Q 004324 293 IQKDIYSGLIWLHSYQDNID---KERISLLKKEMQQAGFEEG-KEVLLSVLRVCAK---EG-----DVEDAEKTWLRLLE 360 (761)
Q Consensus 293 p~~~~~~~li~~~~~~~~g~---~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~---~g-----~~~~a~~~~~~m~~ 360 (761)
.+...|..++....+...++ ..+|..+|++..+. .|+ ...|..+.-+|.- .+ ......+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34555665555554443333 46788888887765 454 2344433333320 00 00111111111111
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004324 361 S-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (761)
Q Consensus 361 ~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 439 (761)
. ....+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.... .|...|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 112345556555555555566666666666666553 55555555556666666666666666666653 344444
Q ss_pred H
Q 004324 440 Y 440 (761)
Q Consensus 440 ~ 440 (761)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.42 Score=38.10 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 004324 468 RPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (761)
+.|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777765544 678888888877764 3456677777777888888888888888887543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.92 Score=52.49 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=24.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (761)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (761)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455555555554322 234555555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.43 Score=38.06 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 436 LMPSYINLTNMYLNLGM---HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 436 d~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
|...+..+..++...++ .++|..++++.++..+.++.....+...+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444455555443322 4666666666665445566666666677777777777777777776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.53 Score=41.21 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHH
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAE 527 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~p--~~~t~~~li~~~~~~g~~~~A~ 527 (761)
+..+.+.|.+..+.-.++..+.-.+.-++++.+ +++++..+|++..+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555434477777777778888877 5668888888877763 24 2445566667788888888888
Q ss_pred HHHHHHHH
Q 004324 528 KIYDLMCL 535 (761)
Q Consensus 528 ~~~~~m~~ 535 (761)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888885
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.62 Score=40.78 Aligned_cols=82 Identities=11% Similarity=-0.066 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 004324 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLG---MHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
+..+.+-|.+....|. ++..+...+..++++.. +.+++..+|+.+.+...| +...+-.|.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555555555553 66677777777777776 555777777777763223 34555566677788888888888
Q ss_pred HHHHhhhC
Q 004324 493 IFNHMHSD 500 (761)
Q Consensus 493 l~~~m~~~ 500 (761)
.++...+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888874
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.16 E-value=5 Score=35.97 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004324 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (761)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (761)
.-..+|+++.|.++.+++ -+...|..|-......|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 334556666666655443 245556666666666666666665555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.41 E-value=1.6 Score=35.32 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
...+..|..+|.+.|++++|..++++..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444445555555555555555444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=88.76 E-value=4.4 Score=32.65 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMH 498 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (761)
.+..|..+|.+.|++++|..++++..
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333344444444444444444333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=87.94 E-value=2.9 Score=40.84 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKE-----RKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 159 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
....|...+++.++...--.+-..|+.|...|.+. |+.++|.+.|++-.+.+..-+..++...-..++. ..|+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~--~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI--PLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT--TTTC
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--hcCC
Confidence 34667777888887641112467899999999994 9999999999999986432247788888888883 2599
Q ss_pred HHHHHHHHHHHHhcCCCC--CCHHHHHH
Q 004324 234 LDEACSIYNRMIQLGGYQ--PRPSLHNS 259 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~--p~~~t~~~ 259 (761)
.++|.+.+++.... ... |+....|.
T Consensus 256 ~~~a~~~L~kAL~a-~p~~~P~~~lan~ 282 (301)
T 3u64_A 256 RAGFDEALDRALAI-DPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHHC-CGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCCCChhHHHH
Confidence 99999999999986 344 66544443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.68 E-value=3.1 Score=43.21 Aligned_cols=76 Identities=9% Similarity=-0.021 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCccChHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWMEK 547 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~ 547 (761)
+...++..+...|++++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|++..+ -|..|.|.+-+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 44567788889999999999999988874 55888999999999999999999999998764 388888887444
Q ss_pred HHH
Q 004324 548 LDY 550 (761)
Q Consensus 548 ~~~ 550 (761)
+..
T Consensus 251 ~~~ 253 (388)
T 2ff4_A 251 NER 253 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.35 E-value=27 Score=40.30 Aligned_cols=150 Identities=9% Similarity=0.019 Sum_probs=63.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCC-HHHHHH---HHHHHHhcC
Q 004324 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA--KIGEFMKSLEIFREMQERLGSAS-VPAYHK---IIELLCKAE 416 (761)
Q Consensus 343 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~---li~~~~~~g 416 (761)
+-.|+-+....++..+.+.. +..+...+.-+++ ..|+.+.+..+.+.+... .+ .+-|.+ +.-+|+..|
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555554432 2222222333333 446666666666555542 12 222321 223445555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 004324 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI-EKAEEIFN 495 (761)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~ 495 (761)
+.....+++..+.... ..++.....+.-+....|+.+.+.+++..+.+...|.+.--.++.-+....|.. .+|.+++.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 6555555666555431 112222222222222344444444555444432233333333333333334332 45555555
Q ss_pred Hhhh
Q 004324 496 HMHS 499 (761)
Q Consensus 496 ~m~~ 499 (761)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 5554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=86.89 E-value=4.9 Score=33.72 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 469 PNRTIYGIYLESLKNAGNIEK---AEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
++..+--.+.-++++..+... +..++++....+ .| .....-.|.-|+.+.|++++|.++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445555544333 555555555442 12 122233344456666666666666666664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=4.9 Score=39.30 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC
Q 004324 332 KEVLLSVLRVCAKE-----GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI-GEFMKSLEIFREMQERLGS 399 (761)
Q Consensus 332 ~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~ 399 (761)
-..|..+...|.+. |+.++|++.|++..+.++.-+..++....+.|+.. |+.++|.+.+++.......
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34555666666663 77777777777777665433355666666666663 6777777777776665444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=85.86 E-value=5.3 Score=33.55 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC--CHHHHHHHHHHHH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR---LHLAFSECLEKCRP--NRTIYGIYLESLK 482 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~~~p--~~~~~~~li~~~~ 482 (761)
++..-.....+..+.+-+......|. |+..+-..+..++.+.....+ +..++..+.+...| .....-.|.-++.
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444444556677777777766664 788888888889998887666 88999998874333 3445556677999
Q ss_pred hcCCHHHHHHHHHHhhhCC
Q 004324 483 NAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~g 501 (761)
+.|++++|.+.++.+.+..
T Consensus 86 klg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999853
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.80 E-value=38 Score=35.61 Aligned_cols=187 Identities=9% Similarity=0.094 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCC
Q 004324 312 DKERISLLKKEMQQA-----GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY----AKIGE 382 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~ 382 (761)
++..|++.+..+.+. ...-.......++..|.+.|+++...+.+..+.+..-. --.....+|..+ .....
T Consensus 31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCc
Confidence 345555554444322 23445667778888888888888887777666554222 122223333322 22232
Q ss_pred hHHHHH--HHHHHH---HcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHh
Q 004324 383 FMKSLE--IFREMQ---ERLGSA---SVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPL---MPSYINLTNMYLN 449 (761)
Q Consensus 383 ~~~A~~--~~~~m~---~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~li~~~~~ 449 (761)
.+.... +..... +..+.. .......|...|...|++.+|..++..+... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222111 111110 011111 1122345666777778888888888777652 22111 3455666777777
Q ss_pred cCCHHHHHHHHHHHHh-----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 450 LGMHDRLHLAFSECLE-----KCRPN--RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 450 ~g~~~~a~~~~~~m~~-----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+++..|..+..++.. ...|+ ...|..++..+...+++.+|.+.|.+...
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7788777777777642 12222 23456666677777777777777766643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.96 E-value=23 Score=31.63 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETEL 420 (761)
Q Consensus 341 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 420 (761)
.....|+++.|.++.+.+ -+...|..|-+...+.|+++-|.+.|....+ |..+.--|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888887665 1567888888888888888888888876643 2234444555666655
Q ss_pred HHHHHHHHHHcC
Q 004324 421 TESLMKEFVETG 432 (761)
Q Consensus 421 A~~l~~~m~~~g 432 (761)
-.++-+.....|
T Consensus 79 L~kla~iA~~~g 90 (177)
T 3mkq_B 79 LSKMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc
Confidence 544444444433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.68 E-value=10 Score=42.66 Aligned_cols=50 Identities=18% Similarity=-0.032 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004324 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (761)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (761)
.+.|+++-|+++-++...-.+-+-.+|-.|...|...|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455555555555554433444555666666666666666666555555
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.04 E-value=5.3 Score=45.02 Aligned_cols=55 Identities=18% Similarity=0.025 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
.+-|...|+++.|+++-++.... .+-+-.||..|...|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456689999999999999886 34467899999999999999999999999884
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.98 E-value=6 Score=31.47 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 420 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.++.+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44445555555556666666666666666666666666666666554444444455544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.10 E-value=6.2 Score=40.88 Aligned_cols=69 Identities=4% Similarity=-0.023 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRS 509 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~~p~~~t 509 (761)
...++..+...|+++++...+..+....+-+...|..+|.+|.+.|+..+|++.|+...+ -| +.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG-~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG-IDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS-CCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 344566677778888888777777765567888888889999999999999888887654 36 6776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 761 | ||||
| d1r7ma2 | 105 | d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Bake | 3e-17 | |
| d1r7ma1 | 118 | d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker' | 4e-09 |
| >d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Homing endonuclease-like superfamily: Homing endonucleases family: Group I mobile intron endonuclease domain: DNA endonuclease I-SceI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.6 bits (186), Expect = 3e-17
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 635 VIPK-LIHRWLTPRALAYWFMYGGHR------TSVGDILLKLK-VSSEGIALVFKTLKAR 686
IP L+ +LTP +LAYWFM G + ++ I+L + + E + + K L+ +
Sbjct: 3 TIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNK 62
Query: 687 -SLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELK 724
L+C VK I + +F+ LI+PY++ ++
Sbjct: 63 FQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMM 101
|
| >d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Homing endonuclease-like superfamily: Homing endonucleases family: Group I mobile intron endonuclease domain: DNA endonuclease I-SceI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (127), Expect = 4e-09
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 552 LSLNRKEVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSV 609
L N K +K K + L+ EQ E IGL+LG I S ++ K + ++F++ +
Sbjct: 10 LGPNSKLLKEYKSQLIELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEW-----KNKA 64
Query: 610 LRRYLYDQYHEWLHPSFKF 628
++ Y +W+
Sbjct: 65 YMDHVCLLYDQWVLSPPHK 83
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 761 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1r7ma2 | 105 | DNA endonuclease I-SceI {Baker's yeast (Saccharomy | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.41 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.41 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.86 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.85 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.8 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.68 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.68 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.29 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.07 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.05 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.99 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.97 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.93 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.74 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.58 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.35 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.1 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.94 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.75 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.5 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 95.69 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.37 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.71 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.85 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.3e-18 Score=178.39 Aligned_cols=378 Identities=15% Similarity=0.087 Sum_probs=216.9
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~ 233 (761)
.-+.|+++.|.+.++.+.+.. +.+..++..+..+|.+.|++++|...|++..+.... +..+|..+...|. +.|+
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~---~~g~ 82 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYK---ERGQ 82 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH---HHTC
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhh---hhcc
Confidence 346677777777777777664 456667777777777777777777777777665322 4566777777777 5777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCH
Q 004324 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK 313 (761)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~ 313 (761)
+++|+..+....+.. ..+............... ....+.............
T Consensus 83 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--------------------- 133 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAG------DMEGAVQAYVSALQYNPD--------------------- 133 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHS------CSSHHHHHHHHHHHHCTT---------------------
T ss_pred ccccccccccccccc--cccccccccccccccccc------cccccccccccccccccc---------------------
Confidence 777777777776642 122222111111111110 122222222222222211
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004324 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (761)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (761)
...............+....+...+.......+. +...+..+...+...|+.++|...+.+.
T Consensus 134 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 195 (388)
T d1w3ba_ 134 -----------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp -----------------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -----------------cccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHH
Confidence 2222333333344444444554444444443322 3444455555555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHH
Q 004324 394 QERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (761)
Q Consensus 394 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (761)
.+.. +-+..+|..+...+...|++++|...++...... ..+...+..+...|.+.|++++|...|++..+..+.+..+
T Consensus 196 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T d1w3ba_ 196 VTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4431 1234455555555566666666666665555543 2344555556666666666666666666665544555666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHh
Q 004324 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS 553 (761)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~ 553 (761)
|..+...|...|++++|.+.|+...... +.+...+..+...+.+.|++++|++.|++.++ .+|+.
T Consensus 274 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~--------- 338 (388)
T d1w3ba_ 274 YCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF--------- 338 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT----SCTTC---------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC---------
Confidence 7777777777777777777777666652 45666677777777777777777777777653 23321
Q ss_pred hhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHHhhhh
Q 004324 554 LNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (761)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~~~g~ 620 (761)
..+|..+...+...|++++|...++ ++++|+++..+..++.+|.+.|+
T Consensus 339 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 339 -------------------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred -------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4455556666667777777777776 67777777777777777776553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.5e-17 Score=173.09 Aligned_cols=355 Identities=11% Similarity=0.062 Sum_probs=229.1
Q ss_pred hhcCCccchhhHHHHHHhhhcccCCcchh-hhhH--HHhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 004324 120 CKELPSHKGGTLVRILNAQKKWLRQEDGT-YLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196 (761)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~t-~~~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 196 (761)
-+.|....|...+..+... .|+... +..+ .+.+.|++++|..+++.+++.. +.+..++..+..+|.+.|++
T Consensus 10 ~~~G~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccc
Confidence 3567777787777665432 355432 3333 7778999999999999999885 66788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhH
Q 004324 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYL 276 (761)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~~~~~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~ 276 (761)
++|...+....+.... +...+........ ..+....+.......... ........... ....... +..
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~------~~~ 151 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALV---AAGDMEGAVQAYVSALQY-NPDLYCVRSDL-GNLLKAL------GRL 151 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHH---HHSCSSHHHHHHHHHHHH-CTTCTHHHHHH-HHHHHTT------SCH
T ss_pred cccccccccccccccc-ccccccccccccc---cccccccccccccccccc-ccccccccccc-ccccccc------chh
Confidence 9999999999886543 3444444444444 355666666666655554 22222222222 2222221 144
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004324 277 QQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL 356 (761)
Q Consensus 277 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 356 (761)
..+...+........ -+..++..+...+...|++++|...++
T Consensus 152 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 193 (388)
T d1w3ba_ 152 EEAKACYLKAIETQP--------------------------------------NFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HHHHHHHHHHHHHCT--------------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHHHHHHhhccCc--------------------------------------chhHHHHhhcccccccCcHHHHHHHHH
Confidence 444444444433221 133444555556666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004324 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (761)
Q Consensus 357 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 436 (761)
...+..+. +..+|..+...|...|++++|...|.+..... +.+...+..+...+.+.|++++|...|++..+.. +-+
T Consensus 194 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~ 270 (388)
T d1w3ba_ 194 KAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHF 270 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSC
T ss_pred HHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 66655432 45566666677777777777777777666543 2345566666667777777777777777766642 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 004324 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (761)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~ 516 (761)
..++..+...|.+.|++++|.+.+.......+.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+...
T Consensus 271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 56667777777777777777777777666556677777777777777777777777777776643 3345667777777
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|++++|++.|++.++
T Consensus 349 ~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 349 LQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777764
|
| >d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Homing endonuclease-like superfamily: Homing endonucleases family: Group I mobile intron endonuclease domain: DNA endonuclease I-SceI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=1.2e-15 Score=124.55 Aligned_cols=95 Identities=31% Similarity=0.527 Sum_probs=85.9
Q ss_pred ccchh-hhhhccCccceeeeeeeCCccc------CCCcEEEEecc-CHHHHHHHHHHHh-hcCCceeEeecCcEEEEEEe
Q 004324 634 LVIPK-LIHRWLTPRALAYWFMYGGHRT------SVGDILLKLKV-SSEGIALVFKTLK-ARSLDCRVKKKGRVFWIGFL 704 (761)
Q Consensus 634 ~~~~~-m~~~g~~Pd~~ty~~li~g~~~------~~~~~~~~~~g-~~~e~~~l~~~m~-~~gl~~~~~~~~~~~~i~i~ 704 (761)
|+++. ++++.++|-+++||+|.||+.. .++.+..+|++ +.+|+..+.+.+. ++||+|++++++.+|+|+|+
T Consensus 2 K~iP~~li~~~Ltp~~LA~W~MDDG~~~~~~~~~~~~~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~i~~~~~~~~i~i~ 81 (105)
T d1r7ma2 2 KTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYID 81 (105)
T ss_dssp ECCCTTHHHHHCCHHHHHHHHHHHEEESCCCTTCCCCCEEECCTTSCHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEEC
T ss_pred CcCCHHHHHhhCCHHHHHheEecCCccccccccCCCCceEEEeCCCCHHHHHHHHHHHHHHhCceEEEEecCCeEEEEEe
Confidence 56776 6899999999999999999862 34567788888 9999999999996 57999999999999999999
Q ss_pred CCCHHHHHHhhccccchhhhhccc
Q 004324 705 GSNSTLFWKLIEPYVLDELKEDLL 728 (761)
Q Consensus 705 ~~~~~~~~~li~~~~~~~m~~~~~ 728 (761)
+++.+.|+++|+||++|+|.||+|
T Consensus 82 ~~s~~~~~~lI~pyi~psm~YKlp 105 (105)
T d1r7ma2 82 SMSYLIFYNLIKPYLIPQMMYKLP 105 (105)
T ss_dssp GGGHHHHHHHHTTTCCGGGGGGCC
T ss_pred hhHHHHHHHHhhhcCccccccCCC
Confidence 999999999999999999999987
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.1e-11 Score=122.93 Aligned_cols=226 Identities=14% Similarity=0.001 Sum_probs=186.0
Q ss_pred HHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004324 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 383 (761)
+..+.+.|++++|...|++..+... -+..+|..+..+|...|++++|...|.+..+..+. +...|..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 4556788999999999999987632 25778999999999999999999999999887654 678889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLGSASV----------------PAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTNM 446 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~----------------~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~ 446 (761)
++|.+.+++..... |+. ..+...+..+...+...+|...+....+.. -.++..++..+...
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999987642 211 111222334455677888999998887743 24467888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004324 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (761)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A 526 (761)
+...|++++|...|++.....+-+..+|..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987556678999999999999999999999999998853 33678899999999999999999
Q ss_pred HHHHHHHHH
Q 004324 527 EKIYDLMCL 535 (761)
Q Consensus 527 ~~~~~~m~~ 535 (761)
++.|++.++
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999885
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.1e-11 Score=122.90 Aligned_cols=234 Identities=10% Similarity=0.002 Sum_probs=186.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004324 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (761)
Q Consensus 338 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (761)
....+.+.|++++|...|+.+.+..+. +..+|..+...|...|++++|...|.+..+.. +-+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 445678999999999999999998755 68899999999999999999999999988753 3367788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHH
Q 004324 418 TELTESLMKEFVETGMKP--------------LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESL 481 (761)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p--------------d~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~ 481 (761)
+++|.+.++......-.. +.......+..+...+...+|...|....+ ....+..++..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999988742110 011112223344556678888888888775 3346788899999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcc
Q 004324 482 KNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKK 561 (761)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 561 (761)
...|++++|...|++..... +-+..+|..+...|.+.|++++|++.|++.++ .+|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~------------------ 238 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALE----LQPG------------------ 238 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT------------------
T ss_pred HHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHH----Hhhc------------------
Confidence 99999999999999998764 34678999999999999999999999999986 3333
Q ss_pred cccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhh
Q 004324 562 PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (761)
Q Consensus 562 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~ 607 (761)
+..+|..|...|...|+.++|+..++ +.+.|++...
T Consensus 239 ----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 239 ----------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp ----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred ----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence 25567788888999999999999998 7888876543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=3.4e-08 Score=99.19 Aligned_cols=190 Identities=12% Similarity=0.071 Sum_probs=155.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (761)
.+..++|..+|+...+....-+...|...+..+-+.|++++|..+|+++...........|...+..+.+.|..+.|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 34568889999998876555567788889999999999999999999998754333355799999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 004324 425 MKEFVETGMKPLMPSYINLTNM-YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503 (761)
Q Consensus 425 ~~~m~~~g~~pd~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 503 (761)
|+.+.+.+. .+...|...... +...|+.+.|..+|+.+.+..+.+...|...++.+.+.|+++.|..+|++.......
T Consensus 157 ~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 157 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999988653 233444444333 344689999999999999877788999999999999999999999999998886433
Q ss_pred CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 504 GVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 504 ~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|+ ...|...+.--..+|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 46899999888899999999999999975
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.4e-07 Score=94.61 Aligned_cols=197 Identities=9% Similarity=0.071 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004324 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE-FMKSLEIFREMQERLGSASVPAYHKIIEL 411 (761)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (761)
..++.+-..+.+.+..++|.++++.+++..+. +..+|+.....+.+.|+ +++|+..++...+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 45556666677888889999999988888754 67788888888888764 788999888887653 2367788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-----
Q 004324 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN----- 486 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~----- 486 (761)
+.+.|++++|++.++.+.+.. +-+..+|..+...+.+.|++++|...++.+++.-+.+...|+.+...+.+.|.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 888899999999999888854 34678888888889999999999999998887556778888888777776665
Q ss_pred -HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 487 -IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 487 -~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+++|.+.+.+..+.. +-+...|+.+...+.. ...+++.+.++...+
T Consensus 201 ~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV--PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 678888888888864 4467778777665544 446778888877764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=4.6e-07 Score=90.82 Aligned_cols=209 Identities=10% Similarity=0.040 Sum_probs=166.1
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEG-DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 382 (761)
..+.+.+..++|+.+++++.+. .| +...|+....++...| ++++|.+.++...+..+. +..+|+.+...+.+.|+
T Consensus 51 ~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 51 AVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhcc
Confidence 4455667789999999999986 44 4567888888888877 489999999999988765 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 004324 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM------HDRL 456 (761)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~------~~~a 456 (761)
+++|++.|+++.+.. +-+...|+.+...+.+.|++++|.+.++.+++.. +-+...|+.+...+.+.+. +++|
T Consensus 128 ~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 128 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHh
Confidence 999999999998863 3478899999999999999999999999999965 3367788877777776664 6788
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 004324 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (761)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~ 519 (761)
...+...++..+.+...|+.+...+...| .+++.+.++...+...-..+...+..++..|..
T Consensus 206 i~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 88888888766778999988877665544 677888887776543122345666677776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=3e-07 Score=92.01 Aligned_cols=194 Identities=9% Similarity=-0.001 Sum_probs=153.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004324 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (761)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 460 (761)
+..++|..+|++..+...+.+...|...+..+.+.|+.++|..+|+.+++........+|...+..+.+.|..+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678899999888765555677888889999999999999999999998543334567899999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Q 004324 461 SECLEKCRPNRTIYGIYLESL-KNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (761)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (761)
..+.+..+.+...|....... ...|+.+.|..+|+.+... .+.+...|...+..+.+.|+.++|..+|++..... .
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-~ 234 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-S 234 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-S
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C
Confidence 999886666666666655543 3468999999999999987 45678899999999999999999999999988632 1
Q ss_pred cChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHHHHHH--hhccccc
Q 004324 540 IESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENS 604 (761)
Q Consensus 540 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~ 604 (761)
.+|. ....+|...+.--..+|+.+.+..+.+ .++-|..
T Consensus 235 ~~~~---------------------------~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 235 LPPE---------------------------KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGG---------------------------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChH---------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 2221 115578888887788899999888877 4555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=6.3e-07 Score=90.83 Aligned_cols=269 Identities=10% Similarity=-0.023 Sum_probs=178.3
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 004324 303 WLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IP----TPAFVYK 373 (761)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~l 373 (761)
....+...|++++|+.++++.....-..+ ..++..+..+|...|++++|.+.++...+.... ++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 45667788889999999988776422111 245667778888889999999988887654211 11 2345566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHH
Q 004324 374 MEAYAKIGEFMKSLEIFREMQER----LGS--AS-VPAYHKIIELLCKAEETELTESLMKEFVETG----MKPLMPSYIN 442 (761)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~t~~~ 442 (761)
...|...|++..|...+.+.... +.. +. ...+..+...+...|+++.|...+....... ......++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 77888888999988888876431 111 11 1345566677888888888888888877632 2223456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCCHHHHHHH
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT--IGVNTRSCNII 513 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~~p~~~t~~~l 513 (761)
+...+...+....+...+..... ..... ...+..+...+...|++++|...+++...... -......+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 67777888888888888877654 22221 23456667778888888888888888765431 11224556667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhhhhhhHHH
Q 004324 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (761)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 593 (761)
...|...|++++|...+++.....-.. ...+ ....++..+...+...|+.++|.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------~~~~-~~~~~~~~la~~~~~~g~~~~A~ 311 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSL-------------------------RLMS-DLNRNLLLLNQLYWQAGRKSDAQ 311 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT-------------------------TCHH-HHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhc-------------------------ccCh-HHHHHHHHHHHHHHHCCCHHHHH
Confidence 788888888888888888876421000 0111 12556777777788888888888
Q ss_pred HHHH
Q 004324 594 HMIR 597 (761)
Q Consensus 594 ~~~~ 597 (761)
..++
T Consensus 312 ~~l~ 315 (366)
T d1hz4a_ 312 RVLL 315 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8888
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=5.5e-06 Score=83.55 Aligned_cols=263 Identities=10% Similarity=-0.045 Sum_probs=192.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh
Q 004324 272 SKYYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQAGF-EEG----KEVLLSVLRVCAK 344 (761)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~ 344 (761)
..|++++|..++++.++.....+.. +......+..+...|++++|...|++...... .++ ..++..+...+..
T Consensus 24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 103 (366)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 4589999999999998865433221 22333445778889999999999998765321 122 2345677788899
Q ss_pred cCChHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 004324 345 EGDVEDAEKTWLRLLES----DNGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQERL----GSASVPAYHKIIELLC 413 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~----g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~li~~~~ 413 (761)
.|++..+...+...... +.... ...+..+...|...|+++.|...+....... ......++..+...+.
T Consensus 104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (366)
T d1hz4a_ 104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999876642 21111 2355667788999999999999999887542 2233456677778888
Q ss_pred hcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHh
Q 004324 414 KAEETELTESLMKEFVET--GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC----RPNRTIYGIYLESLKN 483 (761)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~--g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~----~p~~~~~~~li~~~~~ 483 (761)
..+...++...+.+.... ..... ...+..+...+...|+.+.|...+....+.. ......+..+...|..
T Consensus 184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 263 (366)
T d1hz4a_ 184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 263 (366)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 999999999998887652 11221 2345667778889999999999999877521 2234567778899999
Q ss_pred cCCHHHHHHHHHHhhh----CCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 484 AGNIEKAEEIFNHMHS----DQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 484 ~g~~~~A~~l~~~m~~----~g~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.|++++|...+++... .+ ..|+ ..++..+...|.+.|++++|.+.+++.++
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 264 LGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999998764 23 3343 45788888999999999999999998874
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=6.1e-07 Score=86.90 Aligned_cols=120 Identities=11% Similarity=-0.107 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004324 275 YLQQAEFIFHNLLTSGL-EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 353 (761)
+.+.|+.-+++...... .+.........++..+.+.|++++|...|++..+... -+..+|+.+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence 45555555555544322 2222222223334455555666666666655554321 134555555555666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 004324 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (761)
Q Consensus 354 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (761)
.|+++.+..+. +..+|..+...|...|++++|.+.|+...+.
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66655555432 3445555555555556666666665555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=8.2e-08 Score=97.51 Aligned_cols=258 Identities=7% Similarity=-0.039 Sum_probs=141.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCHHHH-H---HHHHHHHcCCC-CCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004324 230 VQGCLDEACSIYNRMIQLGGYQPRPSLH-N---SLFRALVSKPG-GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (761)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~-~---~ll~~~~~~~g-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (761)
+.+..++|++++++..+. .|+..+. + .++..+..... ....|.+++|+.+++...+.+.. +...+.....+
T Consensus 41 ~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~ 116 (334)
T d1dcea1 41 AGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHH
Confidence 345568999999999874 5876553 2 12222222100 01124677888888888776643 33444444444
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLL-SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 383 (761)
......++.++|...+.++..... ++...+. .....+...+..++|...++.+.+.++. +...|+.+...|.+.|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCH
Confidence 555566677888888887776532 2344443 3335666678888888888877777654 677777788888888887
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004324 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (761)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (761)
++|...+....+. .|+ ...+...+...+..+++...+....... .++...+..+...+...++.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7776555443332 011 1112223334444455555555544432 222333334444444445555555555444
Q ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
.+..+.+..+|..+...|...|++++|.+.|++..+
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 432223334444455555555555555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=2.3e-06 Score=82.63 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004324 312 DKERISLLKKEMQQAGFEEG---KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (761)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (761)
+.+.++.-+++........+ ..+|..+..+|.+.|++++|.+.|++..+..+. +..+|+.+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 34555555555544321111 124444555566666666666666666655433 45556666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004324 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (761)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (761)
.|++..+.. +-+..+|..+...|...|++++|...|+...+.
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666655532 113344555555555566666666666555553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=9.2e-07 Score=89.45 Aligned_cols=44 Identities=16% Similarity=-0.125 Sum_probs=38.1
Q ss_pred HhHHHHHhhhhhhhhhhhHHHHHHH--hhccccchhhHHHHHHHHH
Q 004324 573 ENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYD 616 (761)
Q Consensus 573 ~~~~~~ll~~~~~~g~~~~a~~~~~--~~l~p~~~~~~~~l~~~~~ 616 (761)
..+|..+...+...|+.++|...++ +.++|....+|..|...+.
T Consensus 276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 276 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 6778888888999999999999999 9999998888887777665
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=3.2e-05 Score=75.96 Aligned_cols=209 Identities=10% Similarity=0.007 Sum_probs=141.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHH
Q 004324 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPAFVYKMEAYAKIGEFMK 385 (761)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~ 385 (761)
+++++|.++|.+. ...|...|++++|.+.|.+..+. +-.+ -..+|+.+..+|.+.|++++
T Consensus 31 ~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~ 95 (290)
T d1qqea_ 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (290)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHH
Confidence 3467777666543 45788889999999988877653 1111 13578888899999999999
Q ss_pred HHHHHHHHHHc----CCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 004324 386 SLEIFREMQER----LGS-ASVPAYHKIIELLCK-AEETELTESLMKEFVET----GMKP-LMPSYINLTNMYLNLGMHD 454 (761)
Q Consensus 386 A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~-~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~g~~~ 454 (761)
|.+.+++..+. |.. ....++..+...|-. .|++++|.+.+++..+. +-.+ -..++..+...|.+.|+++
T Consensus 96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence 99999876432 110 013445566666644 69999999999887652 2111 1346788899999999999
Q ss_pred HHHHHHHHHHhCCCCC------H-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHh--CCC
Q 004324 455 RLHLAFSECLEKCRPN------R-TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSAYLS--SGD 522 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p~------~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~---~~t~~~li~~~~~--~g~ 522 (761)
+|...|+++......+ . ..|..++..+...|+++.|...|++..+...--++ ......++.++.. .+.
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~ 255 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH
Confidence 9999999987622211 1 23445556777889999999999998875310111 2345667777765 345
Q ss_pred HHHHHHHHHHHH
Q 004324 523 FVKAEKIYDLMC 534 (761)
Q Consensus 523 ~~~A~~~~~~m~ 534 (761)
+++|+..|+++.
T Consensus 256 ~~eai~~y~~~~ 267 (290)
T d1qqea_ 256 LSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHHHHh
Confidence 888998887765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.14 E-value=7.4e-05 Score=73.19 Aligned_cols=238 Identities=8% Similarity=0.067 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhccCCCHHH
Q 004324 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (761)
Q Consensus 236 ~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (761)
++.+++++..+. .+|....+. .+.... .+++++|..+|.+.- ..|...+++++
T Consensus 3 ~~~~~l~~aek~--~~~~~~~~~----~~~~~~----~~~~~~Aa~~y~~aa-----------------~~y~~~~~~~~ 55 (290)
T d1qqea_ 3 DPVELLKRAEKK--GVPSSGFMK----LFSGSD----SYKFEEAADLCVQAA-----------------TIYRLRKELNL 55 (290)
T ss_dssp CHHHHHHHHHHH--SSCCCTHHH----HHSCCS----HHHHHHHHHHHHHHH-----------------HHHHHTTCTHH
T ss_pred CHHHHHHHHHHh--cCcchhHHH----HhcCCc----cccHHHHHHHHHHHH-----------------HHHHHCcCHHH
Confidence 456677776664 345543332 222221 147899999888762 44667778999
Q ss_pred HHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHH-cCChH
Q 004324 316 ISLLKKEMQQA----GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-----IPTPAFVYKMEAYAK-IGEFM 384 (761)
Q Consensus 316 a~~l~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~-~g~~~ 384 (761)
|...|.+.... +-.++ ..+|..+..+|.+.|++++|.+.++...+.... ....++..+...|-. .|+++
T Consensus 56 A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (290)
T d1qqea_ 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHH
Confidence 99999877553 21121 357888999999999999999999876653111 113455566666744 69999
Q ss_pred HHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHHhcCCH
Q 004324 385 KSLEIFREMQE----RLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-----M-PSYINLTNMYLNLGMH 453 (761)
Q Consensus 385 ~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~-~t~~~li~~~~~~g~~ 453 (761)
+|.+.|.+..+ .+.++. ..+|..+...|...|++++|...|++......... . ..+..++..|...|++
T Consensus 136 ~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 215 (290)
T d1qqea_ 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence 99999988643 121111 34578889999999999999999999887532211 1 2234455567788999
Q ss_pred HHHHHHHHHHHhCCC--CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHhhhC
Q 004324 454 DRLHLAFSECLEKCR--PN---RTIYGIYLESLKN--AGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 454 ~~a~~~~~~m~~~~~--p~---~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~ 500 (761)
+.|...++...+-.+ ++ ......++.+|-. .+.+++|+..|+++.+.
T Consensus 216 ~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 999999999876221 22 2345667777765 34688999988776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=0.00017 Score=65.62 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=80.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004324 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (761)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (761)
.+...|++++|++.|.++ ..|+..+|..+..+|.+.|++++|.+.|++.++-.+.+...|..+..+|.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 345566677776666543 2455666666777777777777777777777664456677777777777777777777
Q ss_pred HHHHHHhhhCCC-------------CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 491 EEIFNHMHSDQT-------------IGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 491 ~~l~~~m~~~g~-------------~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+.|++...... ..++ ..++..+..+|.+.|++++|.+.|.+..+
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777777654210 0111 24555667778888888888888888774
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=0.00019 Score=65.18 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=79.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 375 EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD 454 (761)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~ 454 (761)
..+...|++++|++.|.++ .+|+..+|..+-.+|...|++++|.+.|++.++.. +-+...|..+..+|.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 3445566666666666543 23455666666666666677777777776666643 234566666666666777777
Q ss_pred HHHHHHHHHHhCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 004324 455 RLHLAFSECLEKCRP----------------NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (761)
Q Consensus 455 ~a~~~~~~m~~~~~p----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 501 (761)
+|...|++.+...+. ...++..+..+|.+.|++++|.+.|.......
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 776666665431111 13556677888999999999999999887754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=9.7e-05 Score=61.03 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=71.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH
Q 004324 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (761)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~ 523 (761)
...+.+.|++++|...|.+.++..+.+...|..+..+|.+.|++++|+..+++..+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCH
Confidence 4556777888888888888777667777888888888888888888888888887764 45777888888888888888
Q ss_pred HHHHHHHHHHHH
Q 004324 524 VKAEKIYDLMCL 535 (761)
Q Consensus 524 ~~A~~~~~~m~~ 535 (761)
++|+..|++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888888888874
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.99 E-value=0.0075 Score=57.17 Aligned_cols=218 Identities=6% Similarity=-0.024 Sum_probs=156.8
Q ss_pred HhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 004324 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK- 379 (761)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 379 (761)
..+...++.++|++.|++..+.| |...+..|-..|.. ..+...|...+....+.+ +......+...+..
T Consensus 10 ~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~ 83 (265)
T d1ouva_ 10 AKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSG 83 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccccc
Confidence 34456788999999999888876 56666666666765 668888999988888877 44555555555544
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 004324 380 ---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN--- 449 (761)
Q Consensus 380 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~--- 449 (761)
..+.+.|...++.-.+.|. ......+...+.. ......|...+......+ +...+..|...|..
T Consensus 84 ~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 84 QGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG 157 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred cccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCC
Confidence 4677889998888877653 2333333333332 445677777777766644 56777888888876
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----C
Q 004324 450 -LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----S 520 (761)
Q Consensus 450 -~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~ 520 (761)
..+...+...+....+ ..+..+...|...|.. ..++++|..+|++..+.| +...+..|...|.+ .
T Consensus 158 ~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 158 TPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp SCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSS
T ss_pred cccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc----CHHHHHHHHHHHHcCCCCc
Confidence 3567778888777765 3467777777777765 568999999999999988 67788788777775 3
Q ss_pred CCHHHHHHHHHHHHHcCCcc
Q 004324 521 GDFVKAEKIYDLMCLKKYEI 540 (761)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~~ 540 (761)
.+.++|.++|++....|...
T Consensus 232 ~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp CCSTTHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHHHHHCcCHH
Confidence 47899999999998877544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.97 E-value=5.7e-05 Score=69.23 Aligned_cols=99 Identities=8% Similarity=-0.049 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 004324 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (761)
Q Consensus 435 pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li 514 (761)
|+...+......|.+.|++++|...|.+.++..+.+...|+.+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHHH
Confidence 4555566666777777777777777777766556677777777778888888888888888777643 23466777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (761)
.+|.+.|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888877764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=0.00011 Score=64.56 Aligned_cols=91 Identities=14% Similarity=-0.008 Sum_probs=61.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
...|.+.|++++|...|.+.++.. +-+...|..+..+|...|++++|...|+..++..+.+..+|..+..+|...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345566777777777777776653 3356666667777777777777777777776644556667777777777777777
Q ss_pred HHHHHHHHhhhC
Q 004324 489 KAEEIFNHMHSD 500 (761)
Q Consensus 489 ~A~~l~~~m~~~ 500 (761)
+|...|++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777777664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00019 Score=59.22 Aligned_cols=90 Identities=10% Similarity=-0.006 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (761)
..+.+.|++++|..+|.+.++.. +-+...|..+..+|.+.|++++|...+...++..+.+...|..+..+|...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44555666666666666666543 33455666666666666666666666666665445666677777777777777777
Q ss_pred HHHHHHHhhhC
Q 004324 490 AEEIFNHMHSD 500 (761)
Q Consensus 490 A~~l~~~m~~~ 500 (761)
|+..|++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777776664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=5.3e-05 Score=63.08 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHH
Q 004324 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF---VKAEKIYDLMC 534 (761)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~---~~A~~~~~~m~ 534 (761)
+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|+.+|+++.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l 63 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444444455555555555555443 23444444444444443332 23555555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.82 E-value=0.00016 Score=66.08 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004324 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (761)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (761)
|+...+.-....|.+.|++++|+..|.+.++.. +-+...|+.+..+|.+.|++++|...|...++-.+-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 455555566667777777777777777776653 3356677777777777777777777777777644556777888888
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 004324 480 SLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~ 499 (761)
+|.+.|++++|+..|++...
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888877654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.0003 Score=61.63 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
....|.+.|++++|...|.+.++-.+.+...|..+...|...|++++|...|++..+.. +-+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCC
Confidence 35678899999999999999998667899999999999999999999999999999864 4467899999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 004324 523 FVKAEKIYDLMCLK 536 (761)
Q Consensus 523 ~~~A~~~~~~m~~~ 536 (761)
+++|.+.+++..+.
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999863
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.74 E-value=0.00011 Score=60.07 Aligned_cols=89 Identities=11% Similarity=-0.063 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCC
Q 004324 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (761)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~ 522 (761)
+...+.+.|++++|...|++.++..+-+..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCC
Confidence 34455666666666666666665444566677777777777777777777777766653 3346666677777777777
Q ss_pred HHHHHHHHHHH
Q 004324 523 FVKAEKIYDLM 533 (761)
Q Consensus 523 ~~~A~~~~~~m 533 (761)
+++|++.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00013 Score=60.67 Aligned_cols=94 Identities=9% Similarity=-0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCC-HHHHHHHHHH
Q 004324 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI---EKAEEIFNHMHSDQTIGVN-TRSCNIILSA 516 (761)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~~p~-~~t~~~li~~ 516 (761)
..|++.+...+++++|.+.|+..+...+.+..++..+..++.+.++. ++|+.+|++....+ -.|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 35667777778888888888888775677888888888888875544 46888888887754 1222 2367778888
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 004324 517 YLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (761)
|.+.|++++|++.|+++++
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 8899999999999999886
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.58 E-value=0.00035 Score=56.93 Aligned_cols=87 Identities=8% Similarity=-0.067 Sum_probs=51.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHH
Q 004324 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (761)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (761)
..+.+.|++++|...|++.++.. +-+..+|..+..+|.+.|++++|...|++..+..+.+..+|..+...|...|++++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence 34455556666666666655542 12355555566666666666666666666555445556666666666666666666
Q ss_pred HHHHHHHh
Q 004324 490 AEEIFNHM 497 (761)
Q Consensus 490 A~~l~~~m 497 (761)
|.+.|++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00067 Score=56.75 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----HHHHHHHH
Q 004324 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----TRSCNIIL 514 (761)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~-----~~t~~~li 514 (761)
+-.+...|.+.|++++|...|.+.++..+.+..+|..+..+|.+.|++++|.+.++++++...-.+. ..+|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888755677888888888888899999999888887663200011 24677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHH
Q 004324 515 SAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (761)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 549 (761)
..+...+++++|++.|++.... .++++.+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~ 119 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 8888888999999999887742 35666544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00074 Score=59.73 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCR--PN-------------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 503 (761)
.+......|.+.|++++|...|.+.++-++ +. ..+|+.+..+|.+.|++++|+..+++.....
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-- 92 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-- 92 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc--
Confidence 444555667777788888877777765111 10 1334445555555555555555555555543
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 504 GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 504 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
+.+..+|..+..+|...|++++|+..|++..+
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22455555555555555555555555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.43 E-value=0.051 Score=51.03 Aligned_cols=192 Identities=12% Similarity=0.111 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004324 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYH 406 (761)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (761)
|...+..|-..+-+.+++++|.+.|++..+.| +...+..|-..|.. ..+...|...+..-...+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556667777888999999999999999988 56777777777776 568889999998887765 444444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004324 407 KIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (761)
Q Consensus 407 ~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (761)
.+...+.. ....+.|...++...+.|. ......+...+.. ......+...+..... ..+...+..|.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~ 149 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhh
Confidence 45444443 4678899999999888773 2333334444443 3456677777776653 56778888888
Q ss_pred HHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 004324 479 ESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKK 537 (761)
Q Consensus 479 ~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (761)
..|.. ..+...+..+++...+.| +...+..|-..|.. ..++++|+.+|++..+.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhccCCCcccccccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 88886 457888999999888887 67777666666665 568999999999998766
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.41 E-value=0.028 Score=54.74 Aligned_cols=49 Identities=4% Similarity=0.148 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004324 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528 (761)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~ 528 (761)
-++..+-+.+++.-...+++.....| +....+++...|...++++.-.+
T Consensus 253 r~V~~~~k~~~l~li~p~Le~v~~~n----~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 253 RAVNYFSKVKQLPLVKPYLRSVQNHN----NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC----hHHHHHHHHHHHhCcchhHHHHH
Confidence 34555556677777777777766665 56788888888888888654333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.0044 Score=54.47 Aligned_cols=77 Identities=17% Similarity=0.035 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV-NTRSCNIILSA 516 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p-~~~t~~~li~~ 516 (761)
.+|+.+..+|.+.|++++|...++..++..+.++.+|..+..+|...|++++|...|++..+.. | |......+-..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~---P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 4677788889999999999999999987656789999999999999999999999999998864 5 44444444333
Q ss_pred H
Q 004324 517 Y 517 (761)
Q Consensus 517 ~ 517 (761)
.
T Consensus 140 ~ 140 (170)
T d1p5qa1 140 Q 140 (170)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=0.0027 Score=56.36 Aligned_cols=122 Identities=9% Similarity=-0.046 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 004324 408 IIELLCKAEETELTESLMKEFVET--GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (761)
........|++++|.+.|...... |-... .....+-+...-..+. ......+..+...+.+.|
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~---~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALV---EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHHCC
Confidence 335677889999999999888873 21100 0000000111111111 112467788999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCccChHHHH
Q 004324 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWME 546 (761)
Q Consensus 486 ~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 546 (761)
++++|...++++.... +-+...|..++.+|.+.|+..+|++.|+++.. -|+.|.+.+-.
T Consensus 82 ~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 82 RASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999999875 55889999999999999999999999999843 48888887633
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.27 E-value=0.0065 Score=53.15 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 004324 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (761)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~ 517 (761)
.+|+.+..+|.+.|++++|...++..++..+.+..+|..+..+|...|++++|...|++..... |.+...+..+-...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3566677788888888888888888887667788888888888888888888888888888754 33444544444443
Q ss_pred HhCCCH-HHHHHHHHHHH
Q 004324 518 LSSGDF-VKAEKIYDLMC 534 (761)
Q Consensus 518 ~~~g~~-~~A~~~~~~m~ 534 (761)
.+.+.. +...++|..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 343333 23444444444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.22 E-value=0.0047 Score=53.12 Aligned_cols=60 Identities=10% Similarity=-0.076 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (761)
+|+.+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|...|++++|+..|++..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555544432 2344455555555555555555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00016 Score=76.66 Aligned_cols=207 Identities=9% Similarity=-0.016 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004324 315 RISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (761)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (761)
+|.+.|++..+. +||. ..+..+-.++...|++++| ++++...++. ....++.. ...-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e--~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVE--QDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHH--HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHH--HHHHHHHHHHHHHHHHHh
Confidence 567777776653 4442 2344555666667777665 5566554321 01112111 111111245566777766
Q ss_pred HHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004324 394 QERLGSASVPAYHKIIELLC--KAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470 (761)
Q Consensus 394 ~~~g~~p~~~t~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~ 470 (761)
.+....++..-......++. ..+.++.|+..+....+ +.| +...+..+...+.+.|+.+.|...+.....- ..
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH--HH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH
Confidence 65543344333222222221 12334444433333222 333 4556777778888888888888877765531 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
..++..|.+.+...|++++|...|++..+.. +-+..+|+.|...|...|+..+|+..|.+.+.
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567778888999999999999999988863 34558899999999999999999999998884
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.10 E-value=0.0034 Score=55.10 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
.|..+..+|.+.|++++|+..+...++-.+.+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555433445555555555555555555555555555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.97 E-value=0.0057 Score=53.57 Aligned_cols=82 Identities=11% Similarity=0.016 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004324 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (761)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (761)
+...|+.+..+|.+.|++++|+..+...++.. +.+..+|..+..+|.+.|++++|...|....+-.+.+..++..+..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34456677778888888888888888888754 34577888888888888888888888888887545566666666555
Q ss_pred HHh
Q 004324 481 LKN 483 (761)
Q Consensus 481 ~~~ 483 (761)
..+
T Consensus 155 ~~~ 157 (169)
T d1ihga1 155 KQK 157 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.94 E-value=0.02 Score=48.90 Aligned_cols=62 Identities=18% Similarity=-0.011 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
+|+.+..+|.+.|++++|.+.+...++..+.+..+|..+..+|...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666666666666666666666544556666666666666666666666666666664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.013 Score=48.47 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=46.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC----HHHHHHHHHH
Q 004324 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLES 480 (761)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~ 480 (761)
+-..|.+.|++++|...|.+.++.. +.+..++..+..+|.+.|++++|...+..+++ ..... ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555432 22344555555555555555555555555443 11111 1345555666
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 004324 481 LKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~ 499 (761)
+...+++++|.+.|++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 6666666666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.87 E-value=0.0028 Score=54.01 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC
Q 004324 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-----------NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (761)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g 521 (761)
+++|...|++.++.-+.+..+|..+..+|...| .+++|.+.|++..+. .|+...|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH----
Confidence 455666666666544556667766666666544 357888888888874 47766665544443
Q ss_pred CHHHHHHHHHHHHHcCC
Q 004324 522 DFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 522 ~~~~A~~~~~~m~~~g~ 538 (761)
.+|.+++.+..+.|+
T Consensus 130 --~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQGL 144 (145)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 466777777776664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.85 E-value=0.012 Score=51.91 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCH
Q 004324 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE-----TGMKPLM 437 (761)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~ 437 (761)
.+..+...+.+.|++++|+..++.+... -+-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|..
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 4455556666666666666666665554 223555566666666666666666666665532 3555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.83 E-value=0.011 Score=51.63 Aligned_cols=81 Identities=12% Similarity=0.015 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004324 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (761)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (761)
.|+-+..+|.+.|++++|+..++..++.. +.+..+|..+..+|...|++++|...|..+++..+.+..++..+-....+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45556666777777777777777777653 44567777777777777777777777777776545566665555444444
Q ss_pred cC
Q 004324 484 AG 485 (761)
Q Consensus 484 ~g 485 (761)
.+
T Consensus 145 ~~ 146 (168)
T d1kt1a1 145 AK 146 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.75 E-value=0.027 Score=54.91 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004324 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (761)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (761)
.||..-...+..-|.+.|.++.|..++..+. -|..++..|.+.+++..|.+++.+.. +..+|.-+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 3565556677788889999999999987543 36677888889999999988876442 56788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Q 004324 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (761)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (761)
..+|.+......| .+.......+......++..|-..|..++...++......-..+...++-++..|++.+ .+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hH
Confidence 8888888766543 22233344566667789999999999999999999877545678888999999999875 34
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004324 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (761)
Q Consensus 489 ~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (761)
+-++.++..... + ...-++..|.+.+.|.++.-++.++
T Consensus 150 kl~e~l~~~s~~--y-----~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 150 KMREHLELFWSR--V-----NIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHHHSTT--S-----CHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHhcccc--C-----CHHHHHHHHHHcCChHHHHHHHHhc
Confidence 444444333221 2 2233455666666666666666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.50 E-value=0.0025 Score=60.53 Aligned_cols=122 Identities=7% Similarity=-0.064 Sum_probs=75.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004324 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (761)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (761)
.+.|++++|+..+++.++.. +-|...+..+...|+..|++++|.+.++...+..+-+...+..+...+...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 34577777777777777753 34567777777777777777777777777765434445555555555544444443322
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 004324 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (761)
Q Consensus 493 l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (761)
-...-...+ -+++...+......+...|+.++|..+++++.+.
T Consensus 86 ~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Hhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111111 1223345555566788899999999999998863
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.25 E-value=0.022 Score=48.85 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHh--CCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC--
Q 004324 445 NMYLNLGMHDRLHLAFSECLE--KCRP----------NRTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-- 506 (761)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~--~~~p----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~~p~-- 506 (761)
..+.+.|++++|...|.+.++ .-.| ...+|+.+..+|.+.|++++|.+.+++.... +...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 344455666666666666554 1112 1457788888888888888888888876542 101122
Q ss_pred ---HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004324 507 ---TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (761)
Q Consensus 507 ---~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (761)
...|+.+..+|...|++++|+..|++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788999999999999999999875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.18 E-value=0.0039 Score=59.09 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
...+......+...|+.++|.+++++..+.
T Consensus 99 ~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 99 LTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 344455566778889999999999988775
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.15 E-value=0.0091 Score=50.67 Aligned_cols=117 Identities=14% Similarity=0.076 Sum_probs=86.6
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004324 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKE----------RKFAKCRDIFDDIINQGRVPSEMTFHILIV 223 (761)
Q Consensus 154 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~f~~m~~~g~~pd~~~~~~li~ 223 (761)
+-+.+.+++|.+.++..++.. |.+..++..+-.+|... +.+++|...|++..+.... +..+|+.+-.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHH
Confidence 346677999999999999986 77888888888887744 4567899999998876432 6778888877
Q ss_pred HHhcCCCCC-----------CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHcCC
Q 004324 224 AYLSAPVQG-----------CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL 291 (761)
Q Consensus 224 ~~~~~~~~g-----------~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~g~~~~g~~~~A~~~~~~m~~~~~ 291 (761)
+|. ..| .+++|.+.|++..+ +.|+..+|...|..+ ..|.+++.+..+.|+
T Consensus 84 ~y~---~~g~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~~~~~~L~~~------------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 84 AYT---SFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMT------------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH------------HTHHHHHHHHHHSSS
T ss_pred HHH---HcccchhhHHHHHHhHHHhhhhhhcccc---cCCCHHHHHHHHHHH------------HHHHHHHHHHHHHhc
Confidence 776 233 46889999999887 568888777666543 445666666666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.13 E-value=0.063 Score=45.74 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=54.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------CCCCC----
Q 004324 412 LCKAEETELTESLMKEFVETG-MKPL----------MPSYINLTNMYLNLGMHDRLHLAFSECLE------KCRPN---- 470 (761)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g-~~pd----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~------~~~p~---- 470 (761)
+.+.|++++|+..|++.++.. -.|+ ...|+.+..+|.+.|++++|...+++.++ ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 344455555555555555411 0111 34566667777777777777776666553 11121
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 471 -RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 471 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
..+|+.+..+|...|++++|++.|++..+
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788889999999999999888654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.013 Score=61.26 Aligned_cols=136 Identities=10% Similarity=-0.067 Sum_probs=77.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424 (761)
Q Consensus 345 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (761)
.+.++.|...+....+..+ ++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 3444444444433333222 245567777788888888888888777655431 134566778888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 004324 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (761)
Q Consensus 425 ~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (761)
|++..+.. +-+..+|+.|...|...|+..+|...|.+.+.-.+|...++..|...|.+..
T Consensus 175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 99988853 3345789999999999999999999999888766788889999888876644
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.061 Score=41.33 Aligned_cols=83 Identities=6% Similarity=0.078 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCccChHHHHHHHHHHhhhhhhhcccccCCCchhhHHhHHHHHhhhhhhh
Q 004324 507 TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE 586 (761)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 586 (761)
...+--+...+.+.|++++|+..|++..+..- .++. ... ....++..|..++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~-~~~~---------------------~~~---~~~~~l~~Lg~~~~~~ 59 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLD-EGEI---------------------STI---DKVSVLDYLSYAVYQQ 59 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TTCC---------------------CSS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh-hhhc---------------------cCc---cHHHHHHHHhhHHHhc
Confidence 33455677788999999999999998875210 0000 000 0256788889999999
Q ss_pred hhhhHHHHHHH--hhccccchhhHHHHHHH
Q 004324 587 SDEKRKRHMIR--FQFNENSRMHSVLRRYL 614 (761)
Q Consensus 587 g~~~~a~~~~~--~~l~p~~~~~~~~l~~~ 614 (761)
|++++|...++ ++++|+++.++..+..+
T Consensus 60 g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 60 GDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999 99999998776666543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.01 E-value=0.61 Score=36.78 Aligned_cols=137 Identities=15% Similarity=0.051 Sum_probs=80.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004324 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (761)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 459 (761)
.|.+++..+++.+.... .+..-||-+|--....-+-+-..++++..-+ -.|. .+++++......
T Consensus 15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 78 (161)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred hhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcCc----------hhhhcHHHHHHH
Confidence 45566666666666544 2555566566555555554444444444332 1111 122333333222
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 004324 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (761)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (761)
+-.+ ..+....+..++.+.+.|+-++-.++.+++.+.+ +|++...-.+..||.+-|...++.+++.+..++|.
T Consensus 79 ~~~~----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 79 GVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 2222 2344556666778888888888888888866665 46777777788888888888888888888887775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.11 Score=39.79 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 004324 473 IYGIYLESLKNAGNIEKAEEIFNHMHS 499 (761)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (761)
+++.|..+|.+.|++++|.+.+++..+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444444444444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.82 E-value=0.75 Score=37.31 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCH
Q 004324 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDF 523 (761)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~p~~~t~~~li~~~~~----~g~~ 523 (761)
+.++|.+++.+..+ .-+...+..|-..|.. ..+.++|.++|++..+.| +......|-..|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCCH
Confidence 34445555444443 1233344444444433 235677777777777766 55555555555554 3467
Q ss_pred HHHHHHHHHHHHcCC
Q 004324 524 VKAEKIYDLMCLKKY 538 (761)
Q Consensus 524 ~~A~~~~~~m~~~g~ 538 (761)
++|.++|++..+.|.
T Consensus 112 ~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 112 KQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 777777777766553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.71 E-value=1.5 Score=35.39 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHcC
Q 004324 275 YLQQAEFIFHNLLTSG 290 (761)
Q Consensus 275 ~~~~A~~~~~~m~~~~ 290 (761)
++++|...|.+..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6667777777666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.85 E-value=2.9 Score=32.78 Aligned_cols=134 Identities=10% Similarity=0.129 Sum_probs=72.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHH
Q 004324 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETEL 420 (761)
Q Consensus 344 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~ 420 (761)
-.|.++++.++..+..... +..-||.+|--....-+-+-..++++.+-+. -|... .-.++..+...+..
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls~C~Nlk~vv~C~~~~n~~-- 85 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNTL-- 85 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTCC--
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCchhhhcHHHHHHHHHHhcch--
Confidence 4566777777776666553 4455666555555555555555555554321 11110 11233333333221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 004324 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (761)
Q Consensus 421 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (761)
..-+...++...+.|+-+...++.+.+.+.-++++...-.+..+|-+.|...+|-+++.+..++
T Consensus 86 ----------------se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 86 ----------------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp ----------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 1223334455555666666666666655555666666666666777777777777777776666
Q ss_pred C
Q 004324 501 Q 501 (761)
Q Consensus 501 g 501 (761)
|
T Consensus 150 G 150 (161)
T d1wy6a1 150 G 150 (161)
T ss_dssp T
T ss_pred h
Confidence 6
|