Citrus Sinensis ID: 004339
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 760 | 2.2.26 [Sep-21-2011] | |||||||
| Q6PD62 | 1173 | RNA polymerase-associated | yes | no | 0.688 | 0.445 | 0.351 | 1e-85 | |
| Q4QR29 | 1157 | RNA polymerase-associated | N/A | no | 0.747 | 0.490 | 0.332 | 1e-85 | |
| Q62018 | 1173 | RNA polymerase-associated | yes | no | 0.688 | 0.445 | 0.35 | 2e-85 | |
| Q6DEU9 | 1172 | RNA polymerase-associated | yes | no | 0.690 | 0.447 | 0.339 | 7e-84 | |
| Q03560 | 1150 | TPR repeat-containing pro | yes | no | 0.718 | 0.474 | 0.275 | 1e-51 | |
| O42668 | 1039 | Tetratricopeptide repeat | yes | no | 0.702 | 0.513 | 0.233 | 2e-16 | |
| P89105 | 1077 | RNA polymerase-associated | yes | no | 0.676 | 0.477 | 0.237 | 2e-14 | |
| Q5CZ52 | 462 | Bardet-Biedl syndrome 4 p | no | no | 0.160 | 0.264 | 0.281 | 6e-08 | |
| Q28G25 | 516 | Bardet-Biedl syndrome 4 p | no | no | 0.161 | 0.238 | 0.325 | 2e-05 | |
| O67178 | 761 | Uncharacterized protein a | yes | no | 0.126 | 0.126 | 0.326 | 0.0003 |
| >sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 318 bits (815), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 204/580 (35%), Positives = 317/580 (54%), Gaps = 57/580 (9%)
Query: 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQE 69
F+ P++GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+
Sbjct: 340 FVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKG 399
Query: 70 LLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGV 128
L+K + P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G
Sbjct: 400 HLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGA 459
Query: 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 188
+HF G A + F L LD R + +
Sbjct: 460 LHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAE 486
Query: 189 HVELPWNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246
H E +N ++V +NLARL E + + A LY+ IL ++ +YVD YLRL A+A+ + N
Sbjct: 487 HDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGN 546
Query: 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLS 305
+ + EAL++N +P+A S++G+L L +W ++ F R + D+Y+ L+
Sbjct: 547 FYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLA 606
Query: 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365
LGN + L R + E H ++A +Y +V+ NLYAANG G VLA KG F
Sbjct: 607 LGNV-WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFRE 665
Query: 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425
++D+F QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++
Sbjct: 666 ARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV 720
Query: 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVR 485
LYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q+ + S L+ + EV
Sbjct: 721 LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL 780
Query: 486 STVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQN 545
+ V ELE A R FS+LS + FD T C LL A+ H A +++++
Sbjct: 781 NAVKELELAHRYFSYLSKVGDKMR--FDLALAATEARQCSDLLSQAQYHVARARKQDEEE 838
Query: 546 R-------QRQEAARQAALAEE--ARRKAEEQKKYLLEKR 576
R Q +E RQ L E+ R + +E++K LLE+R
Sbjct: 839 RELRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQR 878
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Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Homo sapiens (taxid: 9606) |
| >sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 210/631 (33%), Positives = 336/631 (53%), Gaps = 63/631 (9%)
Query: 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQE 69
F+ P++GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+
Sbjct: 340 FVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKS 399
Query: 70 LLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGV 128
L+K + P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G
Sbjct: 400 HLKKVTEQYPDDVEAWIELAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGA 459
Query: 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 188
+HF G A + F L LD R + +
Sbjct: 460 LHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAE 486
Query: 189 HVELPWNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246
H E +N ++V +NLARL E + + + LY+ IL ++ +YVD YLRL A+A+ + N
Sbjct: 487 HDEHYYNSISVTTSYNLARLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGN 546
Query: 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLS 305
+ + EAL++N +P+A S++G+L L +W ++ F R + D+Y+ L+
Sbjct: 547 FYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLA 606
Query: 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365
LGN + L R + E H ++A +Y +V+ + NL+AANG G VLA KG
Sbjct: 607 LGNV-WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVRE 665
Query: 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425
++D+F QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++L
Sbjct: 666 ARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVL 720
Query: 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVR 485
LYLAR ++ + Q+CK+ LL+A H+AP++ L F+ + +Q+ + L+ + V
Sbjct: 721 LYLARALFKCGKLQECKQILLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVL 780
Query: 486 STVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQN 545
+ V ELE A R F++LS + FD + C LL A+ H A +++++
Sbjct: 781 NAVKELELAHRYFNYLSKVGDKMR--FDLALATSEARQCSDLLSQAQYHVARARKQDEEE 838
Query: 546 RQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPA 605
+ E R K E++K+ L +K E E+K LR+ EE +++ EQ R+
Sbjct: 839 K-------------EMRTKQEQEKEVLRQKLLKEQEEKHLREIEEQ-KKLLEQ-RAQYLE 883
Query: 606 SKRRERSENDDDEVGHSEKRRRKGGKRRKKD 636
R S + E +K+R GG+R KK+
Sbjct: 884 KTRNLLSFTGEMETPKEKKQRGGGGRRSKKN 914
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Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus laevis (taxid: 8355) |
| >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 203/580 (35%), Positives = 316/580 (54%), Gaps = 57/580 (9%)
Query: 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQE 69
F+ P++GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+
Sbjct: 340 FVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKG 399
Query: 70 LLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGV 128
L+K + P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G
Sbjct: 400 HLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGA 459
Query: 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 188
+HF G A + F L LD R + +
Sbjct: 460 LHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAE 486
Query: 189 HVELPWNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246
H E +N ++V +NLARL E + + A LY+ IL ++ +YVD YLRL A+A+ + N
Sbjct: 487 HDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGN 546
Query: 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLS 305
+ + EAL++N +P+A S++G+L L +W ++ F R D+Y+ L+
Sbjct: 547 FYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLA 606
Query: 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365
LGN + L R + E H ++A +Y +V+ NLYAANG G VLA KG F
Sbjct: 607 LGNV-WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFRE 665
Query: 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425
++D+F QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++
Sbjct: 666 ARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV 720
Query: 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVR 485
LYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q+ + S L+ + EV
Sbjct: 721 LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL 780
Query: 486 STVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQN 545
+ V ELE A R FS+LS + FD + C LL A+ H A +++++
Sbjct: 781 NAVKELELAHRYFSYLSKVGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEE 838
Query: 546 R-------QRQEAARQAALAEE--ARRKAEEQKKYLLEKR 576
R Q +E RQ L E+ R + +E++K LLE+R
Sbjct: 839 RELRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription (By similarity). Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Mus musculus (taxid: 10090) |
| >sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 199/586 (33%), Positives = 314/586 (53%), Gaps = 61/586 (10%)
Query: 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQE 69
F+ P++GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+
Sbjct: 340 FVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKS 399
Query: 70 LLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGV 128
L+K + P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G
Sbjct: 400 HLKKVTEQYPDDVEAWIELAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGA 459
Query: 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 188
+HF G A + F L LD R + +
Sbjct: 460 LHFRLGNLGEAKKYF---------LASLD------------------------RAKAEAE 486
Query: 189 HVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246
H E +N VT +NLARL E + + + LY+ IL ++ +YVD YLRL A+A+ + N
Sbjct: 487 HDEHYYNAISVTTTYNLARLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGN 546
Query: 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLS 305
+ + EAL++N +P+A S++G+L L +W ++ F R + D+Y+ L+
Sbjct: 547 FYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLA 606
Query: 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365
LGN + L R + E H ++A +Y +V+ + NLYAANG G VLA KG
Sbjct: 607 LGNV-WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVRE 665
Query: 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425
++D+F QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++L
Sbjct: 666 ARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVL 720
Query: 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVR 485
LYLAR ++ + Q+CK+ LL+A H+AP++ L F+ + +Q+ + L+ + V
Sbjct: 721 LYLARALFKCGKLQECKQILLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVL 780
Query: 486 STVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQN 545
+ V ELE A R F++LS + FD + C LL A+ H A +++++
Sbjct: 781 NAVKELELAHRYFNYLSKVGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEE 838
Query: 546 RQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEH 591
+ E R K E++K+ L +K E E+KRL++ EE
Sbjct: 839 K-------------ELRAKQEQEKEILRQKLIKEQEEKRLKEIEEQ 871
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus tropicalis (taxid: 8364) |
| >sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 163/592 (27%), Positives = 303/592 (51%), Gaps = 46/592 (7%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI----- 64
E +YGLGQ+ + + A+ F+ V + P+N +T+K LG +Y VQL
Sbjct: 353 EHTLAHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAE 412
Query: 65 --EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IE 121
+K +++L K ++ D +A IDL +LL ++D +L+ ++ A LL P E
Sbjct: 413 ARQKGRDVLGKYLAVENDDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPE 472
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 181
+LNN+G ++ ++E A FK A L+ + T D + +L+
Sbjct: 473 MLNNVGALYMSMKQYEKAEHHFKRAK------ERLEEQLNT---DEGSLLLE-------R 516
Query: 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241
R + +H+ +T+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I
Sbjct: 517 RSAPEKSHL------LTIRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCIT 570
Query: 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK-- 298
+ R+ + S + + ++ + P +++G+L ++W+ A++ F S + K
Sbjct: 571 RDRHQVYESSLWLKQGVQFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIP 630
Query: 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358
D Y+ ++LGN +F L N R + E ++++A ++Y + + N+YAANG G VLA
Sbjct: 631 DPYSLVALGN-VWFEQLLNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLA 689
Query: 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418
K ++ ++D+F+QV+E+ S + DVW+N+AHV + + A++MY + ++KF
Sbjct: 690 YKRNWNDARDVFSQVRESTS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRK 744
Query: 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTR 478
D+ + YLA+ +Y A + K++L A+ N L+F+ + ++K + L+ +
Sbjct: 745 ENDSTLQHYLAKAYYRANMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHK 804
Query: 479 RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIH 534
T+++V + + +L+ A ++F ++S + + T + CK LL AK
Sbjct: 805 MTSEQVTAAIDDLKFADKIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHK 864
Query: 535 REAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 586
AA+ ++++ R+ E + +A + + E + K EK+KLED K LR
Sbjct: 865 LAAAQTQDEEERRLMEKQEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLR 915
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|O42668|TPR1_SCHPO Tetratricopeptide repeat protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 149/638 (23%), Positives = 271/638 (42%), Gaps = 104/638 (16%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAAK 76
G+GQ+Q+ D SA FE++ E E L LG ++ + + KA+ LL +A
Sbjct: 365 GIGQIQILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSKPDLTKARMLLDRAFN 424
Query: 77 ID-----PR--DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 129
+ PR D+ +I L DT +L A L+ A V E+LNNI V+
Sbjct: 425 LVGSSKLPRVVDSDLYITQARLWEKEDTKKSLGFLTRALDFLESAHMSVGPELLNNIAVL 484
Query: 130 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 189
+ G AH G+ I K K+ + DA+ + D
Sbjct: 485 QYHLGLIPEAH-------GNII-------KAKSVLPDANPELSLLLD------------- 517
Query: 190 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249
+NLAR E++ +T AS Y IL K+ ++DA +R + + N +
Sbjct: 518 -----------YNLARCEEELGNTSVASEAYVSILEKHPSFIDARIRKCLLQLSNPNEET 566
Query: 250 SIELV------NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303
E+ ++ L+V + LS +++ + +T R D D Y+
Sbjct: 567 FKEIRHIMNADSQNLEVRAFFGWYLSKQKRRPVEDPEVRHCSQTLRHWHD-----DIYSL 621
Query: 304 LSLGNWNYFAA----LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359
+ LGN A + N++ K + ++ KA + Y + I N +AA G ++LA+
Sbjct: 622 VQLGNAYMRQAREFRVHNDREKLKRQKLYI-KAIQSYDQAIKFDPKNAHAAQGIAIILAQ 680
Query: 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419
QF + + ++V+EA + + IN+ + F+ A+++++ +
Sbjct: 681 NRQFSKALLILSKVREAIKDATTL------INIGNCLAELKQFSRAIEVFETVYSSTGES 734
Query: 420 TDAQILLYLARTHYE---AEQWQDCKKSLLRAIHLA----PSNYTLRFDAGVAMQKFSAS 472
+L L R + + D K +R LA P N +L F+ VA +F
Sbjct: 735 DTYGVLSCLGRVWLQRGRESKNVDYLKESVRYATLALEKNPENPSLLFN--VAFVQFQLC 792
Query: 473 TLQKTR----RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLL 528
L + + RT +++ + +L+ ++ F+ L + H Y +
Sbjct: 793 ELIRQKPENSRTVEDLNFAMQQLDASIETFTKLVSVE--------------HPPYSPTSI 838
Query: 529 DA-AKIHREAAEREEQQNRQRQEAARQ--AALAEEAR--RKAEEQKKYLLEKRKLEDEQK 583
+ AK+ + +R+ ++ Q Q + AA E+AR R+ E+ ++ E+ L+++Q+
Sbjct: 839 EQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEKQE 898
Query: 584 RLRQQEEHFQRVKE---QWRSSTPASKRRERSENDDDE 618
R RQ +E Q+++E +WR S + + S +DD+E
Sbjct: 899 RERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEE 936
|
Involved in promoting potassiumm ion uptake. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 153/643 (23%), Positives = 267/643 (41%), Gaps = 129/643 (20%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI-------------- 64
GLGQ Q+K ++ FE +Y N E+L+ L +I LG +
Sbjct: 377 GLGQTQIKNNLLEESIITFEN---LYKTN-ESLQELNYI---LGMLYAGKAFDAKTAKNT 429
Query: 65 ---------EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 115
EKA + L + K+ + L+ S + +KT+ L KA
Sbjct: 430 SAKEQSNLNEKALKYLERYLKLTLATKNQLVISRAYLVISQLYELQNQYKTSLDYLSKAL 489
Query: 116 EE-------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168
EE +P+EVLNN+ HF G+F A FK A K V D
Sbjct: 490 EEMEFIKKEIPLEVLNNLACYHFINGDFIKADDLFKQA--------------KAKVSDKD 535
Query: 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228
S+ +T+ +N+AR E+ +D + +Y + +
Sbjct: 536 ESV------------------------NITLEYNIARTNEK-NDCEKSESIYSQVTSLHP 570
Query: 229 DYVDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285
Y+ A +R + A++ ++ +S E+ N+ L +N S G LKN K
Sbjct: 571 AYIAARIRNLYLKFAQSKIEDSDMSTEM-NKLLDLNKSDLEIRSFYG-WYLKNSKERKNN 628
Query: 286 ETFRAASDAT----DGKDSYATLSLGNWNYFAA-----LRNEKRAPKLEATHLEKAKELY 336
E + T + D+YA +SL N A RN K K + ++L KA +LY
Sbjct: 629 EKSTTHNKETLVKYNSHDAYALISLANLYVTIARDGKKSRNPKEQEKSKHSYL-KAIQLY 687
Query: 337 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 396
+V+ N++AA G ++ AE + + ++ +V+++ DV +NLAH Y
Sbjct: 688 QKVLQVDPFNIFAAQGLAIIFAESKRLGPALEILRKVRDSLDNE------DVQLNLAHCY 741
Query: 397 FAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHY-------EAEQWQDCKKSLLRA 448
+ A++ Y+ L+KF T IL L R Y +Q ++ A
Sbjct: 742 LEMREYGKAIENYELVLKKFDNEKTRPHILNLLGRAWYARAIKERSVNFYQKALENAKTA 801
Query: 449 IHL-----APSNYTLRFDAGVAMQKFS-ASTLQKTR---RTADEVRSTVAELENAVRVFS 499
+ L + S + +A+ F A TL+++ RT +++ ++ L+ + +F
Sbjct: 802 LDLFVKESSKSKFIHSVKFNIALLHFQIAETLRRSNPKFRTVQQIKDSLEGLKEGLELFR 861
Query: 500 HLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQ--RQEAARQAA- 556
L+ ++ ++++ ++ + + +A + R E+EE + Q + + AR+
Sbjct: 862 ELNDLKEFNM--IPKEELEQRIQLGETTMKSA-LERSLNEQEEFEKEQSAKIDEARKILE 918
Query: 557 ---LAEEARRKAEEQKKYL-LEK-----RKLEDEQKRLRQQEE 590
L E+ K EE+ + L LEK RKL+DE ++L Q+ E
Sbjct: 919 ENELKEQGWMKQEEEARRLKLEKQAEEYRKLQDEAQKLIQERE 961
|
The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2. In complex with PAF1, required for normal CLN1 and CLN2 G1 cyclin expression in late G1. Also has a role in chromosome segregation where it appears to be involved in microtubule placement. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q5CZ52|BBS4_CAEEL Bardet-Biedl syndrome 4 protein homolog OS=Caenorhabditis elegans GN=F58A4.14 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG++ +LGD A+ ++ L++ PDN E + LG IY++ GQ+++ L DP
Sbjct: 205 LGRLCEELGDTSGAIAAYKSSLKLQPDNTEVMNLLGLIYLRTGQVQEGFVQLGNCLAYDP 264
Query: 80 RDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 138
++QA + +G ++ + SD AL+ ++ A + G + NNIG+ + + +
Sbjct: 265 ANSQAILTIGSIMQNHSDHDVALNKYRVAADVSDYNG-----CLWNNIGIGLLARNKPAA 319
Query: 139 AHQSFKDA 146
+H + K A
Sbjct: 320 SHSALKKA 327
|
May be required for microtubule anchoring at the centrosome. Required for ciliogenesis. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q28G25|BBS4_XENTR Bardet-Biedl syndrome 4 protein homolog OS=Xenopus tropicalis GN=bbs4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG++QL+ GD A+ F + L++ P+N E L LG +Y+Q G +KA E L A DP
Sbjct: 171 LGKIQLQEGDIDGAIQTFTQALQLSPENTELLTTLGLLYLQNGLFQKAFEYLGNALTYDP 230
Query: 80 RDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 138
+ + + G ++ S D AL ++ A + E P+ NNIG+ + K ++ +
Sbjct: 231 SNYKGILAAGCMMQSHGDYDVALSKYRVAAS---SVPESSPL--WNNIGMCFYGKKKYVA 285
Query: 139 AHQSFKDAL 147
A K AL
Sbjct: 286 AISCLKRAL 294
|
May be required for the dynein-mediated transport of pericentriolar proteins to the centrosome. Required for microtubule anchoring at the centrosome but not for microtubule nucleation. Required for ciliogenesis. Xenopus tropicalis (taxid: 8364) |
| >sp|O67178|Y1088_AQUAE Uncharacterized protein aq_1088 OS=Aquifex aeolicus (strain VF5) GN=aq_1088 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 46 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 105
++ + L LG +Y LG++E A+ +L+KA K D + LG L S +
Sbjct: 67 NSAQGLSDLGLLYFFLGRVEDAERVLKKALKFSDVDDALYARLGALYYSQGK------LE 120
Query: 106 TARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
A+ ++A P +E+L N+GV+H KGE E A F+ AL
Sbjct: 121 EAQHYWERALSLNPNKVEILYNLGVLHLNKGELEKALDLFERAL 164
|
Aquifex aeolicus (strain VF5) (taxid: 224324) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 760 | ||||||
| 255550483 | 1065 | tpr repeat nuclear phosphoprotein, putat | 0.996 | 0.710 | 0.803 | 0.0 | |
| 359484435 | 1091 | PREDICTED: RNA polymerase-associated pro | 0.996 | 0.693 | 0.777 | 0.0 | |
| 224068420 | 1056 | PAF1 complex component [Populus trichoca | 0.955 | 0.687 | 0.820 | 0.0 | |
| 356556372 | 1088 | PREDICTED: RNA polymerase-associated pro | 0.978 | 0.683 | 0.770 | 0.0 | |
| 449452556 | 1074 | PREDICTED: RNA polymerase-associated pro | 0.977 | 0.691 | 0.770 | 0.0 | |
| 449500473 | 1050 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.977 | 0.707 | 0.769 | 0.0 | |
| 356530423 | 1086 | PREDICTED: RNA polymerase-associated pro | 0.980 | 0.686 | 0.770 | 0.0 | |
| 297835872 | 1058 | hypothetical protein ARALYDRAFT_480219 [ | 0.973 | 0.699 | 0.712 | 0.0 | |
| 20197768 | 1115 | putative TPR repeat nuclear phosphoprote | 0.973 | 0.663 | 0.714 | 0.0 | |
| 240254442 | 1091 | protein early flowering 8 [Arabidopsis t | 0.973 | 0.678 | 0.714 | 0.0 |
| >gi|255550483|ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] gi|223544778|gb|EEF46294.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1188 bits (3073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/764 (80%), Positives = 679/764 (88%), Gaps = 7/764 (0%)
Query: 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61
ASVKE NKP EF+FPYYGLGQVQLKLG+ ++AL+NFEKVLE+YPDNCETLK LGHIY QL
Sbjct: 303 ASVKETNKPSEFVFPYYGLGQVQLKLGEIKNALSNFEKVLEVYPDNCETLKVLGHIYAQL 362
Query: 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE 121
GQ EKAQE LRKA KIDPRDAQAF+DLGELLISSDTGAALDA KTAR+LLKK G EVP+E
Sbjct: 363 GQTEKAQEYLRKATKIDPRDAQAFLDLGELLISSDTGAALDALKTARSLLKKGGHEVPVE 422
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 181
VLNNIGVI+FE+ E E A ++FK+A+GDGIWL LD K KTY IDA+AS+L +KDMQ FH
Sbjct: 423 VLNNIGVIYFEREELELALETFKEAVGDGIWLAFLDGKAKTYTIDAAASILHYKDMQFFH 482
Query: 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241
+ E DG+ VEL W+KVT LFNLARLLEQ+H+ A+VLY LILFKY DYVDAYLRLAAI+
Sbjct: 483 QLEQDGHRVELTWDKVTALFNLARLLEQMHNIETANVLYVLILFKYPDYVDAYLRLAAIS 542
Query: 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 301
KARNNLQLSIELVNEALKVN K PNALSMLGDLELKNDDWVKAKETFRAAS+ATDGKDSY
Sbjct: 543 KARNNLQLSIELVNEALKVNDKCPNALSMLGDLELKNDDWVKAKETFRAASEATDGKDSY 602
Query: 302 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 361
A LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYTRV+VQHT+NLYAANGAGVVLAEKG
Sbjct: 603 AILSLGNWNYFAAIRNEKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKG 662
Query: 362 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421
FDVSKDLF +VQEAASGS+FVQMPDVWINLAHVYFAQGNFALA+KMYQNCLRKFYY+TD
Sbjct: 663 HFDVSKDLFMEVQEAASGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYSTD 722
Query: 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTA 481
+QILLYLARTHYEAEQWQ+CKK+LLRAIHLAPSNY LRFDAGVAMQKFSASTLQKT+RT
Sbjct: 723 SQILLYLARTHYEAEQWQECKKTLLRAIHLAPSNYILRFDAGVAMQKFSASTLQKTKRTV 782
Query: 482 DEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAERE 541
DEVRSTV ELENAVR+FS LSA+SNLH HGFDEKKINTHVEYCKHLL+AAK+HREAAERE
Sbjct: 783 DEVRSTVDELENAVRLFSQLSASSNLHFHGFDEKKINTHVEYCKHLLEAAKVHREAAERE 842
Query: 542 EQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 601
EQQNRQRQE ARQ ALAEEARRKAEEQKK+LLEKRK EDE KR+RQQEEHF+RVKEQW++
Sbjct: 843 EQQNRQRQEVARQMALAEEARRKAEEQKKFLLEKRKQEDELKRVRQQEEHFERVKEQWKT 902
Query: 602 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPED 661
STP SKRR+RSE D++E GHSEKRRRKGGKRRKK+KSS+S YE E EADMMD REE ED
Sbjct: 903 STPGSKRRDRSEVDEEEGGHSEKRRRKGGKRRKKEKSSKSRYEIEEGEADMMDDREELED 962
Query: 662 EDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESD 721
EDA++NY E ++++QD+D EENA D LAAAGLEDSD +D APS T ARRRRALSESD
Sbjct: 963 EDANVNYGEHKNRLDNQDEDAEENAQDLLAAAGLEDSDAED-AAPSST-ARRRRALSESD 1020
Query: 722 DDEPFERQL-----RDNTDELQDSDGELRENDHKSNGGAALDDD 760
DDE + +L R N+ ELQ+SDGE+RE K G AA DD+
Sbjct: 1021 DDEVLDSKLQSSPVRGNSAELQESDGEIREGADKQYGDAAFDDE 1064
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484435|ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera] gi|297738576|emb|CBI27821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1165 bits (3015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/765 (77%), Positives = 678/765 (88%), Gaps = 8/765 (1%)
Query: 1 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 60
MASVKE NKPH+F+ PYYGLGQVQLKLGDFRS+L+NFEKVLE+YP+NCE LKALGHIYVQ
Sbjct: 329 MASVKESNKPHDFVLPYYGLGQVQLKLGDFRSSLSNFEKVLEVYPENCEALKALGHIYVQ 388
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 120
LGQ EKAQE LRKA KIDPRDAQAF+DLGELLI+SDTGAALDAFKTAR LLKK GEEVPI
Sbjct: 389 LGQTEKAQEYLRKATKIDPRDAQAFLDLGELLITSDTGAALDAFKTARGLLKKGGEEVPI 448
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
E+LNNIGV++FE+GEFE A Q+FK+A+GDGIWL+ +D K +Y DA SM FKDMQLF
Sbjct: 449 ELLNNIGVLYFERGEFELAEQTFKEAVGDGIWLSFIDDKAYSYANDARTSMHHFKDMQLF 508
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
H+ E DG+ VELPWNKVTVLFNLARLLEQ+++T AS+LYRLILFK+ DY+DAYLRLAAI
Sbjct: 509 HQLEEDGHFVELPWNKVTVLFNLARLLEQLNNTKTASILYRLILFKFPDYIDAYLRLAAI 568
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 300
AKARNN+QLSIELV +ALKVN K PN+L MLGDLELKNDDWVKAKETFR+ASDATDGKDS
Sbjct: 569 AKARNNIQLSIELVGDALKVNDKGPNSLCMLGDLELKNDDWVKAKETFRSASDATDGKDS 628
Query: 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 360
YATLSLGNWNYFAA+R+EKRAPKLEATHLEKAKELYTRV+VQH +NLYAANGAGVVLAEK
Sbjct: 629 YATLSLGNWNYFAAIRSEKRAPKLEATHLEKAKELYTRVLVQHNANLYAANGAGVVLAEK 688
Query: 361 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420
G FDVSKD+FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA+KMYQNCLRKFYYNT
Sbjct: 689 GHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNT 748
Query: 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRT 480
D+Q+LLYLARTHYEAEQWQDCKK+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT+RT
Sbjct: 749 DSQVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRT 808
Query: 481 ADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER 540
ADEVRSTVAEL+NAVR+FS LSAASNLH HGFDEKKI THV YCKHLL+AAK+H EAAER
Sbjct: 809 ADEVRSTVAELKNAVRIFSQLSAASNLHFHGFDEKKIETHVGYCKHLLEAAKVHCEAAER 868
Query: 541 EEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 600
EE QNR R E ARQ LAEEARRKAEEQ+K+ LE+RK EDE KR+ QQE+HF+RVKEQW+
Sbjct: 869 EELQNRHRVELARQVNLAEEARRKAEEQRKFQLERRKQEDELKRVMQQEQHFERVKEQWK 928
Query: 601 SSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPE 660
S+ SKR+ERS+ DDDE G SE+RRRKGGKRRKKDK S Y++E A AD MD ++E E
Sbjct: 929 SNNLNSKRKERSQIDDDEGGQSERRRRKGGKRRKKDK---SRYDSEEARADAMDDQDEME 985
Query: 661 DEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSES 720
DED +MN+RE QMN+QDDD E++A D LAAAGLEDSD +D+MA + RR+RA SES
Sbjct: 986 DEDTNMNHRESTNQMNNQDDDGEDDAQDLLAAAGLEDSDAEDDMAGPSSGNRRKRAWSES 1045
Query: 721 DDDEPFERQ-----LRDNTDELQDSDGELRENDHKSNGGAALDDD 760
D+DEP +++ +R+N+ E+Q+SDGE+++++ K NG AA DD+
Sbjct: 1046 DEDEPQDQRPESSPVRENSAEVQESDGEIKDDNDKPNGDAAEDDE 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068420|ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa] gi|222833309|gb|EEE71786.1| PAF1 complex component [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/728 (82%), Positives = 659/728 (90%), Gaps = 2/728 (0%)
Query: 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61
ASVKEINKP EF+FPYYGLGQVQLKLG+ ++AL+NFEKVLE+YPDNCETLK LGHIYVQL
Sbjct: 327 ASVKEINKPSEFVFPYYGLGQVQLKLGEIKNALSNFEKVLEVYPDNCETLKVLGHIYVQL 386
Query: 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE 121
GQ EKAQE LRKAAKIDPRDAQAF+DLGELLIS+DTGAALDAFKTAR+LLKK GEEVPIE
Sbjct: 387 GQTEKAQEFLRKAAKIDPRDAQAFLDLGELLISTDTGAALDAFKTARSLLKKGGEEVPIE 446
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 181
VLNNI VIHFE+ E E A Q+FK+ALGDGIWLT L+ K TY +DA++S+LQ+KDMQ+F
Sbjct: 447 VLNNIAVIHFEREELELALQNFKEALGDGIWLTFLEGKANTYEVDATSSLLQYKDMQIFR 506
Query: 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241
R E +G+ VEL WNKVT LFNLARLLEQ+H+T AS LYRLILFKY DYVDAYLRLAAIA
Sbjct: 507 RLEEEGHSVELSWNKVTTLFNLARLLEQLHNTETASTLYRLILFKYPDYVDAYLRLAAIA 566
Query: 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 301
KARNNL LSIELVNEAL VN K PNALSMLGDLELKNDDWVKAKETFRAAS+ATDGKDSY
Sbjct: 567 KARNNLPLSIELVNEALTVNDKCPNALSMLGDLELKNDDWVKAKETFRAASEATDGKDSY 626
Query: 302 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 361
ATLSLGNWNYFAA+RNEKR PKLEATHLEKAKELYTRV+VQHT+NLYAANGAGVVLAEKG
Sbjct: 627 ATLSLGNWNYFAAIRNEKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKG 686
Query: 362 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421
FDVSKDLFTQVQEAASGS+FVQMPDVWINLAHVYFAQGNFALA+KMYQNCL+KF+YNTD
Sbjct: 687 HFDVSKDLFTQVQEAASGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLQKFFYNTD 746
Query: 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTA 481
+QILLYLARTHYEAEQWQDCK++LLRAIHL PSNYTLRFDAGVAMQKFSASTLQKT+RT
Sbjct: 747 SQILLYLARTHYEAEQWQDCKRTLLRAIHLTPSNYTLRFDAGVAMQKFSASTLQKTKRTV 806
Query: 482 DEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAERE 541
DEVRSTV ELENAVR+FS LSAASNL+ +GFDEKKINTHVEYCKHLL+AA +HREAAERE
Sbjct: 807 DEVRSTVDELENAVRLFSQLSAASNLYFNGFDEKKINTHVEYCKHLLEAAIVHREAAERE 866
Query: 542 EQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 601
EQQNRQR + ARQ ALAEEARRKAEEQ+K+ LE+RK EDE KR+RQQEEHF+RVKEQW+S
Sbjct: 867 EQQNRQRLDLARQMALAEEARRKAEEQRKFQLERRKQEDELKRVRQQEEHFERVKEQWKS 926
Query: 602 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPED 661
ST ASKRR+R++ DD E GH EKRRRKGGKRRKK+KSSRS YE E EADMMD +EPED
Sbjct: 927 STSASKRRDRADIDDGEGGHGEKRRRKGGKRRKKEKSSRSRYEME--EADMMDDHDEPED 984
Query: 662 EDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESD 721
+DA++N+REP QMNDQDD+ EENA D LAAAGLEDSD DD+ A +A RR+RA SESD
Sbjct: 985 DDANVNFREPGYQMNDQDDNAEENAQDVLAAAGLEDSDADDDAAAPSSAGRRKRAWSESD 1044
Query: 722 DDEPFERQ 729
+DE ER+
Sbjct: 1045 EDEISERK 1052
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556372|ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1149 bits (2973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/759 (77%), Positives = 667/759 (87%), Gaps = 15/759 (1%)
Query: 1 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 60
MASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+SAL+NFEKVLE+YPDNCETLKALGHIYVQ
Sbjct: 329 MASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQ 388
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 120
LGQ +K Q+ +RKA KIDPRDAQAF++LGELLI SDTGAALDAFKTA TL KK G+EVPI
Sbjct: 389 LGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTAHTLFKKGGQEVPI 448
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
E+LNNIGV+ FE+GEFE A Q+FK+ALGDG+WL+ ++ + K+ IDA+ S LQFKDMQLF
Sbjct: 449 ELLNNIGVLQFERGEFELARQTFKEALGDGVWLSFINEENKS-SIDAATSTLQFKDMQLF 507
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
H E++G+HVE+PW+KVTVLFNLARLLEQ++D+ AS+ YRLILFKY DY+DAYLRLAAI
Sbjct: 508 HDLESNGHHVEVPWDKVTVLFNLARLLEQLYDSGTASIFYRLILFKYPDYIDAYLRLAAI 567
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 300
AKARNN+ LSIELVN+ALKVN K PNALSMLG+LELKNDDWVKAKET R ASDATDGKDS
Sbjct: 568 AKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRTASDATDGKDS 627
Query: 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 360
YATLSLGNWNYFAA+RNEKR PKLEATHLEKAKEL TRV++QH+SNLYAANGA VVLAEK
Sbjct: 628 YATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELCTRVLIQHSSNLYAANGAAVVLAEK 687
Query: 361 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420
G FDVSKD+FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF LA+KMYQNCLRKFY+NT
Sbjct: 688 GHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNT 747
Query: 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRT 480
D+QILLYLARTHYEAEQWQDC K+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK +RT
Sbjct: 748 DSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRT 807
Query: 481 ADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER 540
ADEVR+TVAEL+NAVRVFS LSAASNLH+HGFDEKKI+THV YC HLL AAK+H EAAE
Sbjct: 808 ADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEH 867
Query: 541 EEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 600
EEQQ RQRQE ARQ ALAEEARRKAEEQ+K+ +E+RK EDE KR+++QEEHF+RVKEQW+
Sbjct: 868 EEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQKQEEHFRRVKEQWK 927
Query: 601 SSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPE 660
SS+ SKRRERS DD+E G EK+R+KGGKRRKKDK S+ Y+ E E D+MD + E
Sbjct: 928 SSS-HSKRRERS--DDEEGGTGEKKRKKGGKRRKKDKHSKLRYDAEEPEDDLMD-EQGME 983
Query: 661 DEDASMNYR-EPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALS 718
DE+A +NYR EP QMN DD EENA LAAAGLEDSD D+E APS + ARRR+ALS
Sbjct: 984 DEEADINYREEPQTQMN---DDAEENAQGLLAAAGLEDSDADEETAAPSSSIARRRQALS 1040
Query: 719 ESDDDEP-FERQ---LRDNTDELQDSDGELRENDHKSNG 753
ESDDDEP +RQ +R N+ ++Q SDGE+R+ D K+NG
Sbjct: 1041 ESDDDEPLLQRQSSPVRQNSADMQLSDGEIRDGD-KTNG 1078
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452556|ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/751 (77%), Positives = 655/751 (87%), Gaps = 8/751 (1%)
Query: 1 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 60
MAS KE NKP EF+FPYYGLGQVQLK+GD RSAL+NFEKVLE+YPDNCETLK LGHIYVQ
Sbjct: 326 MASAKEANKPREFVFPYYGLGQVQLKMGDLRSALSNFEKVLEVYPDNCETLKVLGHIYVQ 385
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 120
LGQ EKAQE LRKA KIDPRDAQAF+DLGELLIS+D AALDAFKTA LLKK G+EVPI
Sbjct: 386 LGQAEKAQESLRKATKIDPRDAQAFLDLGELLISTDESAALDAFKTASILLKKGGQEVPI 445
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
EVLNN+GV+HFE+ EFE A + FK+ALGDGIWL +D K + I+ASAS+LQ+KD++LF
Sbjct: 446 EVLNNLGVLHFEREEFELAERIFKEALGDGIWLDFIDGKVRCPAIEASASVLQYKDVELF 505
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
++ E +G + LPW KVT LFNLARLLEQ+H +SVLYRLILFKY DYVDAYLRLA+I
Sbjct: 506 YQLEREGRAIVLPWKKVTSLFNLARLLEQLHRIEVSSVLYRLILFKYPDYVDAYLRLASI 565
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 300
AKARN +QLSIELVN+ALKVN K NALSMLG+LELKNDDWV+AKETFRAA +ATDGKDS
Sbjct: 566 AKARNYVQLSIELVNDALKVNDKCSNALSMLGELELKNDDWVRAKETFRAAGEATDGKDS 625
Query: 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 360
YATLSLGNWNYFAALRNEKR PKLEATHLEK+KELYTRV+VQH +NLYAANGAGV+LAEK
Sbjct: 626 YATLSLGNWNYFAALRNEKRNPKLEATHLEKSKELYTRVLVQHPANLYAANGAGVILAEK 685
Query: 361 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420
GQFDVSKD+FTQVQEAASG++FVQMPDVWINLAHVYFAQGNF+LA+KMYQNCLRKFYYNT
Sbjct: 686 GQFDVSKDIFTQVQEAASGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNT 745
Query: 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRT 480
D QILLYLART+YEAEQWQDCKK+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT+RT
Sbjct: 746 DYQILLYLARTYYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRT 805
Query: 481 ADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER 540
ADEVRSTVAELENAVRVFS LSAASNLH HGFDEKKI+THV YCKHLL+AA +H +AAE
Sbjct: 806 ADEVRSTVAELENAVRVFSQLSAASNLHFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEH 865
Query: 541 EEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 600
EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+ LE+RKLEDE+KR+ QQE+HF+RVKEQW+
Sbjct: 866 EEQQIRQRQELARQVALAEDARRKADEQRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWK 925
Query: 601 SSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPE 660
S TPA KRRERSE DDDE G+SEKRRRKGGKRRKKD+ +SHYETE A+ DMMD +E
Sbjct: 926 SITPA-KRRERSEIDDDEAGNSEKRRRKGGKRRKKDRKGKSHYETEEADNDMMD-DQELY 983
Query: 661 DEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALSE 719
+ED +++YRE Q+NDQ DD E N D LA AGLEDSD +DE APS AARRR S+
Sbjct: 984 NEDNNISYRESRSQVNDQGDDFEGNDQDALAEAGLEDSDAEDEAGAPSSNAARRRATWSD 1043
Query: 720 SDDDEPFERQ-----LRDNTDELQDSDGELR 745
S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 1044 SEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1074
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500473|ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1143 bits (2956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/751 (76%), Positives = 654/751 (87%), Gaps = 8/751 (1%)
Query: 1 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 60
MAS KE NKP EF+FPYYGLGQVQLK+GD RSAL+NFEKVLE+YPDNCETLK LGHIYVQ
Sbjct: 302 MASAKEANKPREFVFPYYGLGQVQLKMGDLRSALSNFEKVLEVYPDNCETLKVLGHIYVQ 361
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 120
LGQ EKAQE LRKA KIDPRDAQAF+DLGELLIS+D AALDAFKTA LLKK G+EVPI
Sbjct: 362 LGQAEKAQESLRKATKIDPRDAQAFLDLGELLISTDESAALDAFKTASILLKKGGQEVPI 421
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
EVLNN+GV+HFE+ EFE A + FK+ALGDGIWL +D K + I+ASAS+LQ+KD++LF
Sbjct: 422 EVLNNLGVLHFEREEFELAERIFKEALGDGIWLDFIDGKVRCPAIEASASVLQYKDVELF 481
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
++ E +G + LPW KVT LFNLARLLEQ+H +SVLYRLILFKY DYVDAYLRLA+I
Sbjct: 482 YQLEREGRAIVLPWKKVTSLFNLARLLEQLHRIEVSSVLYRLILFKYPDYVDAYLRLASI 541
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 300
AKARN +QLSIELVN+ALKVN K NALSMLG+LE KNDDWV+AKETFRAA +ATDGKDS
Sbjct: 542 AKARNYVQLSIELVNDALKVNDKCSNALSMLGELEXKNDDWVRAKETFRAAGEATDGKDS 601
Query: 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 360
YATLSLGNWNYFAALRNEKR PKLEATHLEK+KELYTRV+VQH +NLYAANGAGV+LAEK
Sbjct: 602 YATLSLGNWNYFAALRNEKRNPKLEATHLEKSKELYTRVLVQHPANLYAANGAGVILAEK 661
Query: 361 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420
GQFDVSKD+FTQVQEAASG++FVQMPDVWINLAHVYFAQGNF+LA+KMYQNCLRKFYYNT
Sbjct: 662 GQFDVSKDIFTQVQEAASGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNT 721
Query: 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRT 480
D QILLYLART+YEAEQWQDCKK+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT+RT
Sbjct: 722 DYQILLYLARTYYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRT 781
Query: 481 ADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER 540
ADEVRSTVAELENAVRVFS LSAASNLH HGFDEKKI+THV YCKHLL+AA +H +AAE
Sbjct: 782 ADEVRSTVAELENAVRVFSQLSAASNLHFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEH 841
Query: 541 EEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 600
EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+ LE+RKLEDE+KR+ QQE+HF+RVKEQW+
Sbjct: 842 EEQQIRQRQELARQVALAEDARRKADEQRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWK 901
Query: 601 SSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPE 660
S TPA KRRERSE DDDE G+SEKRRRKGGKRRKKD+ +SHYETE A+ DMMD +E
Sbjct: 902 SITPA-KRRERSEIDDDEAGNSEKRRRKGGKRRKKDRKGKSHYETEEADNDMMD-DQELY 959
Query: 661 DEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALSE 719
+ED +++YRE Q+NDQ DD E N D LA AGLEDSD +DE APS AARRR S+
Sbjct: 960 NEDNNISYRESRSQVNDQGDDFEGNDQDALAEAGLEDSDAEDEAGAPSSNAARRRATWSD 1019
Query: 720 SDDDEPFERQ-----LRDNTDELQDSDGELR 745
S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 1020 SEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1050
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530423|ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/759 (77%), Positives = 672/759 (88%), Gaps = 14/759 (1%)
Query: 1 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 60
MASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+SAL+NFEKVLE+YPDNCETLKALGHIYVQ
Sbjct: 326 MASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQ 385
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 120
LGQ +K Q+ +RKA KIDPRDAQAF++LGELLI SDTGAALDAFKTARTL KK G+EVPI
Sbjct: 386 LGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPI 445
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
E+LNNIGV+ FE+GEFE A Q+FK+ALGDG+WL+ ++ + K+ IDA+ S LQFKDM+LF
Sbjct: 446 ELLNNIGVLQFERGEFELAQQTFKEALGDGVWLSFINEEKKS-SIDAATSTLQFKDMKLF 504
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
H E++G+HVE+PW+KVTVLFNLARLLEQ++D+ AS+LYRL+LFKY DY+DAYLRLAAI
Sbjct: 505 HDLESNGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILYRLVLFKYPDYIDAYLRLAAI 564
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 300
AKARNN+ LSIELVN+ALKVN K PNALSMLG+LELKNDDWVKAKET RAASDAT+GKDS
Sbjct: 565 AKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRAASDATEGKDS 624
Query: 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 360
YA+LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYTRV++QH+SNLYAANGA VVLAEK
Sbjct: 625 YASLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEK 684
Query: 361 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420
G FDVSKD+FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF LA+KMYQNCLRKFY+NT
Sbjct: 685 GHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNT 744
Query: 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRT 480
D+QILLYLARTHYEAEQWQDC K+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK +RT
Sbjct: 745 DSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRT 804
Query: 481 ADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER 540
ADEVR+TVAEL+NAVRVFS LSAASNLH+HGFDEKKI+THV YC HLL AAK+H EAAER
Sbjct: 805 ADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAER 864
Query: 541 EEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 600
EEQQ RQRQE ARQ A AEEARRKAEEQ+K+ +E+RK EDE KR++QQEEHF+RVKEQW+
Sbjct: 865 EEQQVRQRQELARQVAFAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWK 924
Query: 601 SSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPE 660
SS+ SKRRERS +D++ G EK+R+KGGKRRKKDK S+S Y+TE E + M +E E
Sbjct: 925 SSS-HSKRRERS-DDEEGGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPE-NDMMDEQEME 981
Query: 661 DEDASMNYR-EPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALS 718
DE+A +NYR EP QMN DD EENA LAAAGLEDSD D+E APS + ARRR+ALS
Sbjct: 982 DEEADINYREEPQTQMN---DDAEENAQGLLAAAGLEDSDADEEAPAPSSSIARRRQALS 1038
Query: 719 ESDDDEPF-ERQ---LRDNTDELQDSDGELRENDHKSNG 753
ESDDDEP +RQ R+N+ ++Q SDGE+R+ D K+NG
Sbjct: 1039 ESDDDEPLIQRQSSPARENSADMQLSDGEIRDGD-KTNG 1076
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835872|ref|XP_002885818.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] gi|297331658|gb|EFH62077.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/750 (71%), Positives = 630/750 (84%), Gaps = 10/750 (1%)
Query: 1 MASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 59
MA++KE N KP EF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+YPDNCETLKALGH+Y
Sbjct: 302 MAAIKETNNKPQEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYT 361
Query: 60 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP 119
QLGQ +KA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAFK ARTL+KK G+EVP
Sbjct: 362 QLGQNDKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVP 421
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179
IEVLN+IG +HFE+ EFESA +FK+ALGDGIW++ LD K + S+L +KD +
Sbjct: 422 IEVLNDIGALHFEREEFESALDNFKEALGDGIWISFLDEKEN--LEQTGVSVLGYKDTGI 479
Query: 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
FHR G+ V++PWNKVT LFNLARLLEQ+H T AA+ LY+LILFKY Y+DAYLRLAA
Sbjct: 480 FHRLIESGHSVDVPWNKVTTLFNLARLLEQLHKTEAATFLYQLILFKYPGYIDAYLRLAA 539
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 299
AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKAKETFRAA+DATDGKD
Sbjct: 540 SAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDATDGKD 599
Query: 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359
SYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH SN+YAANG+G+VLAE
Sbjct: 600 SYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHNSNMYAANGSGIVLAE 659
Query: 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419
KGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFALA+KMYQNCLRKF+ N
Sbjct: 660 KGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFALAVKMYQNCLRKFFNN 719
Query: 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRR 479
TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G MQK S+STLQK +R
Sbjct: 720 TDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGAVMQKSSSSTLQKKKR 779
Query: 480 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAE 539
TADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC HLL+AAK+HREAAE
Sbjct: 780 TADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAE 839
Query: 540 REEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW 599
REE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E+E +RL+Q+EE QR+KEQW
Sbjct: 840 REELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRRLKQEEEKIQRIKEQW 899
Query: 600 RSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS-HYETEYAEADMMDYRE 657
+SSTP S KR++R E+DD E SE+RR+KGGKRRKKDKSSR+ HYE + EA MD
Sbjct: 900 KSSTPGSHKRKDRVEDDDGEGKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHN 959
Query: 658 EPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRA 716
E EDEDA+ NY RE + ++ V+++A+D LAAAGLED DV D+ P+ + RRRRA
Sbjct: 960 EVEDEDANTNYNREDEMTNQEAEEPVDDDAHDLLAAAGLEDPDVYDDEVPA-SGVRRRRA 1018
Query: 717 LSESDDDEPFERQLRDN---TDELQDSDGE 743
LS SD++ + + N T E ++S+GE
Sbjct: 1019 LSSSDEEGELMEESQPNQSPTREKEESNGE 1048
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197768|gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/750 (71%), Positives = 632/750 (84%), Gaps = 10/750 (1%)
Query: 1 MASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 59
MA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+YPDNCETLKALGH+Y
Sbjct: 353 MAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYT 412
Query: 60 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP 119
QLGQ EKA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAFK ARTL+KK G+EVP
Sbjct: 413 QLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVP 472
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179
IEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K + S+L +KD +
Sbjct: 473 IEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--LEQTGVSVLGYKDTGI 530
Query: 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLILFKY Y+DAYLRLAA
Sbjct: 531 FHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLILFKYPGYIDAYLRLAA 590
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 299
AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKAKETFRAA+DATDGKD
Sbjct: 591 SAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDATDGKD 650
Query: 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359
SYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH SN+YAANG+G+VLAE
Sbjct: 651 SYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHNSNMYAANGSGIVLAE 710
Query: 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419
KGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL +KMYQNCLRKF+YN
Sbjct: 711 KGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFALTVKMYQNCLRKFFYN 770
Query: 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRR 479
TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G MQK S+STLQK +R
Sbjct: 771 TDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGAVMQKSSSSTLQKKKR 830
Query: 480 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAE 539
TADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC HLL+AAK+HREAAE
Sbjct: 831 TADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAE 890
Query: 540 REEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW 599
+EE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E+E +RL+Q+EE FQR+KEQW
Sbjct: 891 QEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRRLKQEEEKFQRIKEQW 950
Query: 600 RSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS-HYETEYAEADMMDYRE 657
+SSTP S KR++R E+DD E SE+RR+KGGKRRKKDKSSR+ HYE + EA MD
Sbjct: 951 KSSTPGSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHN 1010
Query: 658 EPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRA 716
E EDEDA+ NY RE + ++ V+++A+D LAAAGLED DVDD+ P+ + RRRRA
Sbjct: 1011 EVEDEDANTNYNREDEMTTQEAEEPVDDDAHDLLAAAGLEDPDVDDDEVPT-SGVRRRRA 1069
Query: 717 LSESDDDEPFERQLRDNTD---ELQDSDGE 743
LS SD++ + N+ E ++S+GE
Sbjct: 1070 LSSSDEEGELMEESHPNSSPQKEKEESNGE 1099
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254442|ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana] gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION INDEPENDENCE 6 [Arabidopsis thaliana] gi|330250911|gb|AEC06005.1| protein early flowering 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/750 (71%), Positives = 632/750 (84%), Gaps = 10/750 (1%)
Query: 1 MASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 59
MA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+YPDNCETLKALGH+Y
Sbjct: 329 MAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYT 388
Query: 60 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP 119
QLGQ EKA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAFK ARTL+KK G+EVP
Sbjct: 389 QLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVP 448
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179
IEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K + S+L +KD +
Sbjct: 449 IEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--LEQTGVSVLGYKDTGI 506
Query: 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLILFKY Y+DAYLRLAA
Sbjct: 507 FHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLILFKYPGYIDAYLRLAA 566
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 299
AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKAKETFRAA+DATDGKD
Sbjct: 567 SAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDATDGKD 626
Query: 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359
SYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH SN+YAANG+G+VLAE
Sbjct: 627 SYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHNSNMYAANGSGIVLAE 686
Query: 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419
KGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL +KMYQNCLRKF+YN
Sbjct: 687 KGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFALTVKMYQNCLRKFFYN 746
Query: 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRR 479
TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G MQK S+STLQK +R
Sbjct: 747 TDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGAVMQKSSSSTLQKKKR 806
Query: 480 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAE 539
TADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC HLL+AAK+HREAAE
Sbjct: 807 TADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAE 866
Query: 540 REEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW 599
+EE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E+E +RL+Q+EE FQR+KEQW
Sbjct: 867 QEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRRLKQEEEKFQRIKEQW 926
Query: 600 RSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS-HYETEYAEADMMDYRE 657
+SSTP S KR++R E+DD E SE+RR+KGGKRRKKDKSSR+ HYE + EA MD
Sbjct: 927 KSSTPGSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHN 986
Query: 658 EPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRA 716
E EDEDA+ NY RE + ++ V+++A+D LAAAGLED DVDD+ P+ + RRRRA
Sbjct: 987 EVEDEDANTNYNREDEMTTQEAEEPVDDDAHDLLAAAGLEDPDVDDDEVPT-SGVRRRRA 1045
Query: 717 LSESDDDEPFERQLRDNTD---ELQDSDGE 743
LS SD++ + N+ E ++S+GE
Sbjct: 1046 LSSSDEEGELMEESHPNSSPQKEKEESNGE 1075
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 760 | ||||||
| TAIR|locus:2051592 | 1091 | ELF8 "EARLY FLOWERING 8" [Arab | 0.973 | 0.678 | 0.654 | 6.1e-261 | |
| UNIPROTKB|Q6PD62 | 1173 | CTR9 "RNA polymerase-associate | 0.861 | 0.558 | 0.282 | 1.5e-71 | |
| UNIPROTKB|Q6DEU9 | 1172 | ctr9 "RNA polymerase-associate | 0.609 | 0.395 | 0.320 | 3e-67 | |
| UNIPROTKB|E1C9K0 | 1167 | CTR9 "Uncharacterized protein" | 0.897 | 0.584 | 0.285 | 6.9e-67 | |
| UNIPROTKB|G3V897 | 1173 | Ctr9 "SH2 domain binding prote | 0.901 | 0.583 | 0.274 | 3.2e-66 | |
| MGI|MGI:109345 | 1173 | Ctr9 "Ctr9, Paf1/RNA polymeras | 0.901 | 0.583 | 0.271 | 1.9e-65 | |
| UNIPROTKB|F1S6V3 | 1173 | CTR9 "Uncharacterized protein" | 0.894 | 0.579 | 0.278 | 1.4e-64 | |
| ZFIN|ZDB-GENE-030131-3782 | 1160 | ctr9 "Ctr9, Paf1/RNA polymeras | 0.901 | 0.590 | 0.270 | 7.2e-63 | |
| UNIPROTKB|F1N4V2 | 1175 | CTR9 "Uncharacterized protein" | 0.9 | 0.582 | 0.274 | 1.8e-62 | |
| DICTYBASE|DDB_G0277841 | 1106 | ctr9 "RNA polymerase II comple | 0.953 | 0.655 | 0.233 | 8.9e-62 |
| TAIR|locus:2051592 ELF8 "EARLY FLOWERING 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2511 (889.0 bits), Expect = 6.1e-261, P = 6.1e-261
Identities = 491/750 (65%), Positives = 583/750 (77%)
Query: 1 MASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 59
MA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+YPDNCETLKALGH+Y
Sbjct: 329 MAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYT 388
Query: 60 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP 119
QLGQ EKA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAFK ARTL+KK G+EVP
Sbjct: 389 QLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVP 448
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179
IEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K + S+L +KD +
Sbjct: 449 IEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--LEQTGVSVLGYKDTGI 506
Query: 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLILFKY Y+DAYLRLAA
Sbjct: 507 FHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLILFKYPGYIDAYLRLAA 566
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 299
AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKAKETFRAA+DATDGKD
Sbjct: 567 SAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDATDGKD 626
Query: 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359
SYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH SN+YAANG+G+VLAE
Sbjct: 627 SYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHNSNMYAANGSGIVLAE 686
Query: 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419
KGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL +KMYQNCLRKF+YN
Sbjct: 687 KGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFALTVKMYQNCLRKFFYN 746
Query: 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRR 479
TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G MQK S+STLQK +R
Sbjct: 747 TDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGAVMQKSSSSTLQKKKR 806
Query: 480 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHXXXXX 539
TADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC HLL+AAK+H
Sbjct: 807 TADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAE 866
Query: 540 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW 599
+KY LEKRK E+E +RL+Q+EE FQR+KEQW
Sbjct: 867 QEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRRLKQEEEKFQRIKEQW 926
Query: 600 RSSTPAS-KRRERSENDDDEVGHSEXXXXXXXXXXXXXXXXXX-HYETEYAEADMMDYRE 657
+SSTP S KR++R E+DD E SE HYE + EA MD
Sbjct: 927 KSSTPGSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHN 986
Query: 658 EPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRA 716
E EDEDA+ NY RE + ++ V+++A+D LAAAGLED DVDD+ P+ + RRRRA
Sbjct: 987 EVEDEDANTNYNREDEMTTQEAEEPVDDDAHDLLAAAGLEDPDVDDDEVPT-SGVRRRRA 1045
Query: 717 LSESDDDEPFERQLRDNTD---ELQDSDGE 743
LS SD++ + N+ E ++S+GE
Sbjct: 1046 LSSSDEEGELMEESHPNSSPQKEKEESNGE 1075
|
|
| UNIPROTKB|Q6PD62 CTR9 "RNA polymerase-associated protein CTR9 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.5e-71, Sum P(3) = 1.5e-71
Identities = 199/704 (28%), Positives = 322/704 (45%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +Y+ G E A + K K P + + LG L +S+ D A+ LKK
Sbjct: 347 LGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDI---AKGHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
E+ P +V I + E+ + + A ++ G +L K + V I +
Sbjct: 404 VTEQYPDDVEAWIELAQILEQTDIQGALSAY------GTATRILQEKVQADVPPEILNNV 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + + H E +N VT +NLARL E + + A
Sbjct: 458 GALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R + D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPSTQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395
Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+
Sbjct: 636 YKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHI 690
Query: 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+
Sbjct: 691 YVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSD 750
Query: 456 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK 515
L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS + FD
Sbjct: 751 TVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLA 808
Query: 516 KINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEK 575
T C LL A+ H +K L EK
Sbjct: 809 LAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK 868
Query: 576 RKLEDEQKRLRQQEEHFQRVKE--QWRSSTPASKRRERSEND---DDEVGHSEXXXXXXX 630
E+++K L Q+ ++ ++ K + T A+K ++R + G +
Sbjct: 869 ---EEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKGGEFDEFVNDDT 925
Query: 631 XXXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND-- 688
+ +E + D EE + R P G+ DD+ E
Sbjct: 926 DDDLPISKKKKRRKGSGSEQEGED--EEGGERKKKKRRRHPKGEEGSDDDETENGPKPKK 983
Query: 689 -RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLR 731
R A + + + + PS+ + +A+ S DD E +L+
Sbjct: 984 RRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLK 1027
|
|
| UNIPROTKB|Q6DEU9 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 3.0e-67, Sum P(4) = 3.0e-67
Identities = 160/499 (32%), Positives = 256/499 (51%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +Y+ G E A + K K P + + LG L +SD D A++ LKK
Sbjct: 347 LGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDI---AKSHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
E+ P +V I + E+ + ++A ++ G +L K + V I +
Sbjct: 404 VTEQYPDDVEAWIELAQILEQTDIQNALSAY------GTATRILQEKVQADVPPEILNNV 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + + H E +N VT +NLARL E + + +
Sbjct: 458 GALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTTYNLARLYEGLCEFHESE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R + D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPSTQNDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395
Y +V+ + NLYAANG G VLA KG ++D+F QV+EA + + DVW+NLAH+
Sbjct: 636 YKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHI 690
Query: 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ LL+A H+AP++
Sbjct: 691 YVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQILLKARHVAPND 750
Query: 456 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK 515
L F+ + +Q+ + L+ + V + V ELE A R F++LS + FD
Sbjct: 751 TVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVGDKMR--FDLA 808
Query: 516 KINTHVEYCKHLLDAAKIH 534
+ C LL A+ H
Sbjct: 809 LAASEARQCSDLLSQAQYH 827
|
|
| UNIPROTKB|E1C9K0 CTR9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 6.9e-67, Sum P(2) = 6.9e-67
Identities = 211/738 (28%), Positives = 334/738 (45%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +Y+ G E A + K K P + + LG L +S+ D A+ LKK
Sbjct: 347 LGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDI---AKGHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
E+ P +V I + E+ + + A ++ G +L K + V I +
Sbjct: 404 VTEQYPDDVEAWIELAQILEQTDIQGALSAY------GTATRILQEKVQADVPPEILNNV 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + + H E +N VT +NLARL E + + A
Sbjct: 458 GALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R + D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPSTQNDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395
Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+
Sbjct: 636 YKQVLRNDPKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHI 690
Query: 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK++LL+A H+APS+
Sbjct: 691 YVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQTLLKARHVAPSD 750
Query: 456 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK 515
L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS + FD
Sbjct: 751 TVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLA 808
Query: 516 KINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEK 575
T C LL A+ H +K L EK
Sbjct: 809 LAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK 868
Query: 576 RKLEDEQKRLRQQEEHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXX 631
E+++K L Q+ ++ ++ K + SK ++R + G E
Sbjct: 869 ---EEQKKLLEQRAQYVEKTKNILMFTGEVEGSKEKKRGGGGGRRSKKGAGEFDEFVNDD 925
Query: 632 XXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND--- 688
+ + + ++ D EE E E R P Q D+ D EEN N
Sbjct: 926 SDEDLPMSRKKKKRKGSGSEQ-DGEEE-EGERKKKKRRRP--QKADEGSDDEENENGPRP 981
Query: 689 ---RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLR---DNTDELQDSDG 742
R A + + + + PS+ + +A+ S DD E +L+ D +SD
Sbjct: 982 KKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADDGHARNSNSDS 1041
Query: 743 ELRENDHKSNGGAALDDD 760
+ E H + D D
Sbjct: 1042 DDGEQQHSKRIVSDSDSD 1059
|
|
| UNIPROTKB|G3V897 Ctr9 "SH2 domain binding protein 1 (Tetratricopeptide repeat containing), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 3.2e-66, Sum P(2) = 3.2e-66
Identities = 201/732 (27%), Positives = 332/732 (45%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +Y+ G E A + K K P + + LG L +S+ D A+ LKK
Sbjct: 347 LGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDI---AKGHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
E+ P +V I + E+ + + A ++ G +L K + V I +
Sbjct: 404 VTEQYPDDVEAWIELAQILEQTDIQGALSAY------GTATRILQEKVQADVPPEILNNV 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + + H E +N VT +NLARL E + + A
Sbjct: 458 GALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPATQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395
Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+
Sbjct: 636 YKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHI 690
Query: 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+
Sbjct: 691 YVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSD 750
Query: 456 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK 515
L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS + FD
Sbjct: 751 TVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLA 808
Query: 516 KINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEK 575
+ C LL A+ H +K L EK
Sbjct: 809 LAASEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK 868
Query: 576 RKLEDEQKRLRQQEEHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXX 631
E+++K L Q+ ++ ++ K + T A+K ++R + G E
Sbjct: 869 ---EEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVNDD 924
Query: 632 XXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND--- 688
+ + + ++ EE + R P G+ DD+ E
Sbjct: 925 TDDDLPISKKKKKRKGSGSEQEGEEEEGGERKKKRRRRPPKGEEGSDDDETENGPKPKKR 984
Query: 689 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 748
R A + + + + PS+ + +A+ S DD E +L+ + + ++D
Sbjct: 985 RPPRAEKKKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADEGHPRNSNSDSDDD 1044
Query: 749 HKSNGGAALDDD 760
+ N A+ + D
Sbjct: 1045 ERPNRRASSESD 1056
|
|
| MGI|MGI:109345 Ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 1.9e-65, Sum P(2) = 1.9e-65
Identities = 199/732 (27%), Positives = 332/732 (45%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +Y+ G E A + K K P + + LG L +S+ D A+ LKK
Sbjct: 347 LGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDI---AKGHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
E+ P +V I + E+ + + A ++ G +L K + V I +
Sbjct: 404 VTEQYPDDVEAWIELAQILEQTDIQGALSAY------GTATRILQEKVQADVPPEILNNV 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + + H E +N VT +NLARL E + + A
Sbjct: 458 GALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPATQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395
Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+
Sbjct: 636 YKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHI 690
Query: 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+
Sbjct: 691 YVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSD 750
Query: 456 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK 515
L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS + FD
Sbjct: 751 TVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLA 808
Query: 516 KINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEK 575
+ C LL A+ H +K L EK
Sbjct: 809 LAASEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK 868
Query: 576 RKLEDEQKRLRQQEEHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXX 631
E+++K L Q+ ++ ++ K + T A+K ++R + G E
Sbjct: 869 ---EEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVNDD 924
Query: 632 XXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND--- 688
+ + ++ EE + R P G+ ++++ E
Sbjct: 925 TDDDLPVSKKKKRRKGSGSEQEGEEEEGGERKKKRRRRPPKGEEGSEEEETENGPKPKKR 984
Query: 689 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 748
R A + + + + PS+ + +A+ S DD E +L+ + + ++D
Sbjct: 985 RPPRAEKKKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADEGHPRNSNSDSDDD 1044
Query: 749 HKSNGGAALDDD 760
+ N A+ + D
Sbjct: 1045 ERPNRRASSESD 1056
|
|
| UNIPROTKB|F1S6V3 CTR9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 204/732 (27%), Positives = 330/732 (45%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +Y+ G E A + K K P + + LG L +S+ D A+ LKK
Sbjct: 347 LGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDI---AKGHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
E+ P +V I + E+ + + A ++ G +L K + V I +
Sbjct: 404 VTEQYPDDVEAWIELAQILEQTDIQGALSAY------GTATRILQEKVQADVPPEILNNV 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + + H E +N VT +NLARL E + + A
Sbjct: 458 GALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R + D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPSTQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGA--GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 393
Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + + DVW+NLA
Sbjct: 636 YKQVLRNDAKNLYAANGIALGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLA 690
Query: 394 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453
H+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+AP
Sbjct: 691 HIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAP 750
Query: 454 SNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFD 513
S+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS + FD
Sbjct: 751 SDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FD 808
Query: 514 EKKINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLL 573
T C LL A+ H +K L
Sbjct: 809 LALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLR 868
Query: 574 EKRKLEDEQKRLRQQEEHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXX 629
EK E+++K L Q+ ++ ++ K + T A+K ++R + G E
Sbjct: 869 EK---EEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVN 924
Query: 630 XXXXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND- 688
+ + ++ EE + R P G DD+ E
Sbjct: 925 DDTDDDLPISKKKKRRKGSGSEPEGEEEEGGERKKKKRRRPPKGDEGSDDDETENGPKAK 984
Query: 689 --RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDG--EL 744
R A + + + + PS+ + +A+ S DD E +L+ DE G +
Sbjct: 985 KRRPPRAEKKKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLKI-ADEGHARHGHSDS 1043
Query: 745 RENDHKSNGGAA 756
E D + G ++
Sbjct: 1044 DEGDRRRKGASS 1055
|
|
| ZFIN|ZDB-GENE-030131-3782 ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 7.2e-63, Sum P(2) = 7.2e-63
Identities = 198/731 (27%), Positives = 328/731 (44%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +YV E A + K K P + + LG L +SD D A+ LKK
Sbjct: 347 LGQMYVYRRDKENAAQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDI---AKEHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
+ +V I + E+ + + A ++ G +L K + V I +
Sbjct: 404 VTVQYSDDVEAWIELAQILEQTDIQGALSAY------GTATRILQEKVQADVPPEILNNL 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + +G H E +N VT +NLARL E + + A
Sbjct: 458 GALHFRLGNLGEAKKYFLASLERAKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R + D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPSTQNDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395
Y +V+ + NLYAANG G VLA KG F ++D+F QV+EA + ++ DVW+NLAH+
Sbjct: 636 YKQVLRNDSKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----EISDVWLNLAHI 690
Query: 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
Y Q + A++MY+NCL+KFY + ++LLYLAR ++ + Q+CK++LLRA H+AP++
Sbjct: 691 YVEQKQYISAVQMYENCLKKFYKYQNTEVLLYLARALFKCGKLQECKQTLLRARHVAPND 750
Query: 456 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK 515
L F+ + +Q+ + L+ + V S V ELE A R FS+LS + + FD
Sbjct: 751 TVLMFNVALVLQRLATLVLKDEKSNLKAVLSAVKELELAHRYFSYLSKSGDKMR--FDLA 808
Query: 516 KINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEK 575
+ C LL A+ H ++ +
Sbjct: 809 LAASEARQCSDLLSQAQYHVARARKQDEEEKEHRAKQEQERDLLRQQIMKEQEER---KS 865
Query: 576 RKLEDEQKRLRQQEEHFQRVKE--QWRSSTPASKRRERSENDDDEVGHSEXXXXXXXXXX 633
R+ E+++K L Q+ ++ +R + + ASK +++ + G
Sbjct: 866 REAEEQKKLLEQRAQYVERTRNLLNFEGMKEASKDKKKGGGGRRKKGGDFDEFVNDDSDE 925
Query: 634 XXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAA 693
TE + +++ D EE E + + R P + +D DD E + +
Sbjct: 926 DLPIKKKKKRRTE-SGSEVEDGGEEGEKKPRNKKRRRPNKREDDGSDDEEGGSRPKKQRK 984
Query: 694 GLEDSDVD----DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDH 749
E ++ + M PS+ + +A+ S D E L+ D G +++
Sbjct: 985 PRERKKIEKPKPERMPPSLKGKIKSKAIISSSDSSSDEDGLKIAEDRNARDSGSGSDDEE 1044
Query: 750 KSNGGAALDDD 760
D D
Sbjct: 1045 APRKRIVSDSD 1055
|
|
| UNIPROTKB|F1N4V2 CTR9 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 202/736 (27%), Positives = 330/736 (44%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
LG +Y+ G E A + K K P + + LG L +S+ D A+ LKK
Sbjct: 347 LGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDI---AKGHLKK 403
Query: 114 AGEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV---IDASA 169
E+ P +V I + E+ + + A ++ G +L K + V I +
Sbjct: 404 VTEQYPDDVEAWIELAQILEQTDIQGALSAY------GTATRILQEKVQADVPPEILNNV 457
Query: 170 SMLQFKDMQL----------FHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 217
L F+ L R + + H E +N VT +NLARL E + + A
Sbjct: 458 GALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAE 517
Query: 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L
Sbjct: 518 KLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLA 577
Query: 278 NDDWVKAKETF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKEL 335
+W ++ F R D+Y+ L+LGN W L R + E H ++A +
Sbjct: 578 KQEWGPGQKKFERILKQPATQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAI 635
Query: 336 YTRVIVQHTSNLYAANGA--GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 393
Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + + DVW+NLA
Sbjct: 636 YKQVLRNDAKNLYAANGIALGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLA 690
Query: 394 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453
H+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+AP
Sbjct: 691 HIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAP 750
Query: 454 SNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFD 513
S+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS + FD
Sbjct: 751 SDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FD 808
Query: 514 EKKINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLL 573
T C LL A+ H +K L
Sbjct: 809 LALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLR 868
Query: 574 EKRKLEDEQKRLRQQEEHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXX 629
EK E+++K L Q+ ++ ++ K + T A+K ++R + G E
Sbjct: 869 EK---EEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVN 924
Query: 630 XXXXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND- 688
+ + ++ EE + R P G DD+ E
Sbjct: 925 DDTDEDLPVSKKKKRRKGSGSEQEGEEEEGGERKKKKRRRPPKGDEGSDDDETENGPKPK 984
Query: 689 --RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLR---DNTDELQDSDGE 743
R A + + + + PS+ + +A+ S DD E +L+ + S+ +
Sbjct: 985 KRRPPRAEKKKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADEGHPRNSHSNSD 1044
Query: 744 LRENDHKSNGGAALDD 759
E + + G ++ D
Sbjct: 1045 SDEGERRKKGASSESD 1060
|
|
| DICTYBASE|DDB_G0277841 ctr9 "RNA polymerase II complex component" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 8.9e-62, Sum P(2) = 8.9e-62
Identities = 179/765 (23%), Positives = 355/765 (46%)
Query: 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 66
+ K + +GLGQ+ + D+ A+ FE+VL P+N ETL+ LG +Y G + K
Sbjct: 340 VQKNPDLYLAQFGLGQIHIHNEDYDKAILCFEQVLSKQPNNYETLQILGSLYKH-GSLYK 398
Query: 67 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN-- 124
+ + + I+++ + + + +LKKA E P + N
Sbjct: 399 SN-----VKSTTTTTSTTTTTNNNININNNNNLSNEIINKIKNVLKKATELNPNDSSNWF 453
Query: 125 NIGVIHFEKGEFESAHQSFKDALG----DGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
+G + E E +A ++++ L DGI + L+ + V+ +L +
Sbjct: 454 ELGQV-LESTEVSTALEAYEKGLNLLKKDGI-VPSLEIQNNIAVLRHQKGLLVEAEQTYL 511
Query: 181 HRFENDGNHV-ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
+ G + + +T +NLARL E + A LY+ I+ ++ +Y D YLRL+
Sbjct: 512 DIIKQSGYQLNQFKSINITSTYNLARLYETMGQVNKAEELYKGIIKEHPNYYDCYLRLSC 571
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK- 298
I K + + + E + E L + A ++ G+L L ++W A++ F ++ D K
Sbjct: 572 ICKQQGDYYEAGEWIREVLDIQPDNQEAWALYGNLHLYKEEWYPAQKNFEQITENPDNKN 631
Query: 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358
++YA+LSLGN Y A N + K ++ A++ Y RV+ ++ +N+YAANG G+++A
Sbjct: 632 ETYASLSLGNIYYNAKFSNPDKVEK----YILNAEQFYNRVLTKNPTNIYAANGIGMIIA 687
Query: 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418
EKG +++ + F Q++EA+ + P V +NLAH+Y ++G F A+K+Y+ CL+K
Sbjct: 688 EKGNLNLAGETFLQIREASMDCI----P-VSVNLAHIYVSKGLFDNAIKLYEGCLKKSTS 742
Query: 419 NTDAQ-ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 477
+ + I++YLA+ +++A ++ D K++L +AIH+ P N ++ F+ ++++ + L+K
Sbjct: 743 PKEIETIIMYLAKVYFDANRFYDSKQTLKKAIHMYPHNLSIHFNLAISIEMQATIFLEKH 802
Query: 478 RRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKI-HXX 536
++ A E + + ELE A R+ + L+ + F K TH + +L + + H
Sbjct: 803 QKNATETFNIIKELEFAQRLLTPLANTKSTPKLNFSPSKAKTHQTSIEKILVSLRTEHES 862
Query: 537 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQEEHFQRVK 596
K LE+ KLE E+K ++EE + +
Sbjct: 863 IVKIEADLSKKREAAFEEVKRLEEEKRIRDLELKQQLEE-KLEAERKLAFEEEE---KTR 918
Query: 597 EQWRSSTPASKRRERSENDDDEVGHSEXXXXXXXXXXXXXXXXXXHYETEYAEADMMDYR 656
E+ + A+ + + D E G ++ ++ + AE+ +
Sbjct: 919 EELAKNNAAAAMID-DDYKDGEGGSTKKRKKNKKDQQQQDDD----FDDQPAESKKKQKK 973
Query: 657 EEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRA 716
E+ E ++ +E + + EE A+D ++ +D +++++
Sbjct: 974 EKKEKKEKKEK-KEKKKKSKKVSGEGEEGADDNNDTEQQQEEMAED--GDHKEKKKKKKS 1030
Query: 717 LSESDDDEPFERQLRDNTD-ELQDSDGELRENDHKSNGGAALDDD 760
+ D + +++ ++ E ++ +GE + + ++ DDD
Sbjct: 1031 KKDRKDKKDKKQKRKEKKQREKEEREGEEDDENEETENREEQDDD 1075
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 760 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-11 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-10 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-09 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-07 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 3e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-04 | |
| TIGR02795 | 117 | TIGR02795, tol_pal_ybgF, tol-pal system protein Yb | 5e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 5e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 7e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.001 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 0.001 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.001 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.002 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| COG3071 | 400 | COG3071, HemY, Uncharacterized enzyme of heme bios | 0.003 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.003 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.003 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-14
Identities = 107/495 (21%), Positives = 176/495 (35%), Gaps = 85/495 (17%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
L +QL+LG A+ L + PD+ L LG Y+ LG EKA E L KA ++DP
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
Query: 80 RDAQAFIDLGELLISS----------DTGAALD----------------------AFKTA 107
+A A LG +S +T A LD A A
Sbjct: 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454
Query: 108 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG-------DGIWLTLLDSKT 160
+ L KK + + L +G I+ KG+ A ++F+ AL L +D +
Sbjct: 455 KKLEKKQPDNASLHNL--LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512
Query: 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 220
+ ++ +F+ + D ++ + LA L + + A
Sbjct: 513 G----NPDDAIQRFEKVLTI-----DPKNLR-------AILALAGLYLRTGNEEEAVAWL 556
Query: 221 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 280
++ L LA + L+ ++ ++NEA P A MLG +L D
Sbjct: 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616
Query: 281 WVKAKETFR-AASDATDGKDSYATLSLGNW---NYFAALRNEKRAPK------------- 323
KA +F+ + D + L+ NY A+ + KRA +
Sbjct: 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676
Query: 324 ---LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 380
L A E AK++ + QH G + + + + + + + A S
Sbjct: 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736
Query: 381 VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD 440
I L A GN A A+K + L+ + DA + LA + + +
Sbjct: 737 QNA------IKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDK 788
Query: 441 CKKSLLRAIHLAPSN 455
K + AP N
Sbjct: 789 AIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
LG + KLGD+ AL +EK LE+ PDN + L Y +LG+ E+A E KA +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 77 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKK 113
+DP +A+A+ +LG AL+A++ A L
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-11
Identities = 62/280 (22%), Positives = 113/280 (40%), Gaps = 25/280 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
LG+ QL GD A+++F+K+L + PD+ L L Y + KA L++A ++ P
Sbjct: 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
Query: 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 139
+ +A I L +LL+ A K A++L K+ + L G ++ + ++ +A
Sbjct: 667 DNTEAQIGLAQLLL--AAKRTESAKKIAKSLQKQHPKAALGFEL--EGDLYLRQKDYPAA 722
Query: 140 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW----- 194
Q+++ AL + + S + ++ L + W
Sbjct: 723 IQAYRKAL----------KRAPS-----SQNAIKLHRALLASGNTAEAVKTLEAWLKTHP 767
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
N + LA L D A Y+ ++ K D LA + + + ++E
Sbjct: 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYA 826
Query: 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294
ALK+ P L LG L ++ + +A R A +
Sbjct: 827 ERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 70
+ YY L KLG + AL ++EK LE+ PDN + LG Y +LG+ E+A E
Sbjct: 31 PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEA 90
Query: 71 LRKAAKIDP 79
KA ++DP
Sbjct: 91 YEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 85/437 (19%), Positives = 145/437 (33%), Gaps = 38/437 (8%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
V + ++ A + L+ P+ L G QLG +E+A + L + K P
Sbjct: 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN 327
Query: 81 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 140
QA L + + G +A T L L+ +G + G+FE A
Sbjct: 328 SHQARRLLASIQLRL--GRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAA 383
Query: 141 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR--FENDGNHVELPWNKVT 198
+ A T LD + A + K Q + +L
Sbjct: 384 EYLAKA-------TELDPEN----AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432
Query: 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258
L + A + + K D + L AI + +L + E +AL
Sbjct: 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492
Query: 259 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 318
+ + A + L ++++ + A + F D K+ A L+L A L
Sbjct: 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL-TIDPKNLRAILAL------AGLYLR 545
Query: 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378
E+A + + + A KGQ + + + +AA
Sbjct: 546 TGNE-------EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598
Query: 379 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 438
S P+ W+ L A G+ A+ ++ L + A LL LA + + +
Sbjct: 599 DS-----PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS--ALALLLLADAYAVMKNY 651
Query: 439 QDCKKSLLRAIHLAPSN 455
SL RA+ L P N
Sbjct: 652 AKAITSLKRALELKPDN 668
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 78
GL Q+ L F A ++VL P N + L G + + LG IE A RKA +
Sbjct: 164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR 223
Query: 79 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 138
P + + L +LI G +A K A LLKKA L ++ F+K +E
Sbjct: 224 PNNIAVLLALATILIE--AGEFEEAEKHADALLKKAPNSPLAHYLK--ALVDFQKKNYED 279
Query: 139 AHQSFKDAL 147
A ++ +DAL
Sbjct: 280 ARETLQDAL 288
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 49 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 108
E L LG++Y +LG ++A E KA ++DP +A A+ +L L ++ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK------LGKYEEAL 54
Query: 109 TLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
+KA E P + N+G+ +++ G++E A ++++ AL
Sbjct: 55 EDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 34/133 (25%), Positives = 44/133 (33%), Gaps = 38/133 (28%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
L L+ GD+ A N EK LE P H Y +LG+ + A E RKA
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136
+ P + +VLNN G +G
Sbjct: 98 LAPNNG--------------------------------------DVLNNYGAFLCAQGRP 119
Query: 137 ESAHQSFKDALGD 149
E A Q F+ AL D
Sbjct: 120 EEAMQQFERALAD 132
|
Length = 250 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
L L+ GD A N +K LE PD+ AL Y QLG++EKA++ R+A ++P
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE----EVPIEVLNNIGVIHFEKGE 135
+ + G L ++ A ++A E P L N G+ + G+
Sbjct: 97 NNGDVLNNYGTFLCQ------QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 136 FESAHQSFKDAL 147
F+ A + AL
Sbjct: 151 FDKAEKYLTRAL 162
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
G + + G +D + + + + E D + NLA Y+ G + A++ Y+ L
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454
+A+ L +Y+ ++++ ++ +A+ L P+
Sbjct: 62 E--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 78
G+ Q++ G+F A++ K + P + E LG QLG+ ++A+ R+A ++
Sbjct: 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164
Query: 79 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 114
P + +LG L+ + A TLL A
Sbjct: 165 PNEPSIANNLGMSLLLRGD------LEDAETLLLPA 194
|
Length = 257 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446
+ +NL ++Y+ G++ A++ Y+ L +A LA +Y+ ++++ +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 447 RAIHLAPSNYTLRFDAGVAMQK 468
+A+ L P N ++ G+A K
Sbjct: 59 KALELDPDNAKAYYNLGLAYYK 80
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAA 75
LG KLGD+ A+ +EK LE+ PDN E L Y++LG E+A E L KA
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 76 KIDP 79
++DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 69
L V +LGD+ AL EK LE+ P+ L L +Y+ LG ++A E
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 70 LLRKAAKIDPR 80
L KA +
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 68/380 (17%), Positives = 127/380 (33%), Gaps = 44/380 (11%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
+++A+ + L+ P++ E LG IY+ LG A++ LRKA + Q
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
L + + +TLL G E+L G+ + G+ E A +S++ AL
Sbjct: 96 LARAYLLQGKFQQVLDELPGKTLLDDEGA---AELLALRGLAYLGLGQLELAQKSYEQAL 152
Query: 148 GDGI---------------------WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 186
L+D + A +L+ + E
Sbjct: 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212
Query: 187 ----GNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241
+ L N + VL LA L+E A L+ + YL+ A +
Sbjct: 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVD 271
Query: 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 301
+ N + + E + +ALK +Y AL + G E + + +A +
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQ 330
Query: 302 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 361
A L + +L +++A + + + A + G G
Sbjct: 331 ARRLLA-------------SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377
Query: 362 QFDVSKDLFTQVQEAASGSV 381
F+ + + + E +
Sbjct: 378 DFEKAAEYLAKATELDPENA 397
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258
L NL L ++ D A Y L D DAY LAA + ++E +AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 259 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
+++ A LG K + +A E + A
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 16/291 (5%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
G L LG A ++E+ L I P + L + + + ++A+ L+ + DP
Sbjct: 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190
Query: 80 RDAQAFIDLGELLISSDTG-AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 138
+ A + G+LL+S AL A++ A L I VL + I E GEFE
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-----IAVLLALATILIEAGEFEE 245
Query: 139 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198
A + DAL L + + + A ++ F+ E + ++ +
Sbjct: 246 A-EKHADAL-----LKKAPNSPLAHYLKA---LVDFQKKNYEDARETLQDALKSAPEYLP 296
Query: 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258
L Q+ + A IL + A LA+I + +I ++ AL
Sbjct: 297 ALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPAL 356
Query: 259 KVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGN 308
++ P ALS+LG+ L D+ KA E +A + + L +
Sbjct: 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 53 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLL 111
L Y++ G +E A+E L KA + DP D A++ L + A D+F+ A TL
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 112 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149
G +VLNN G ++G++E A Q F+ A+ D
Sbjct: 96 PNNG-----DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 46 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS--DTGAALDA 103
DN E LK LG+ +LG ++A E KA ++DP +A+A+ +L + D AL+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 104 FKTARTL 110
+ A L
Sbjct: 61 LEKALEL 67
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 16/226 (7%)
Query: 454 SNYTLRFDAGVAMQKFSASTLQKT--RRTADEVRST--VAELENAVRVFSHLSAASNLHL 509
+++ R A A + A L+K ++ ADE + + + A + A
Sbjct: 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
Query: 510 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA-----EEARRK 564
+ KK + K + AK EAA+ E + EAA + A A EEA++K
Sbjct: 1323 KAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Query: 565 AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEK 624
A+ KK EK+K ++ +++ E ++ ++ + + A K+ + ++ +E +++
Sbjct: 1380 ADAAKKKAEEKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 625 RRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYRE 670
++K + +K D++ + E + AE E + ++A E
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 30/128 (23%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 528 LDAAKIHREAAEREEQQNRQRQEAARQAA----LAEEARRKAEEQKKYLLEKRKLEDEQK 583
+AA+ EAAE+++++ +++ +AA++ A A+EA++KAEE KK E +K +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 584 RLRQQEEHFQRVK--EQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 641
+ + ++ + K ++ + +K+ + ++ +E +E+ ++K + +K D++ +
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 642 HYETEYAE 649
E + A+
Sbjct: 1479 AEEAKKAD 1486
|
Length = 2084 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 97/483 (20%), Positives = 167/483 (34%), Gaps = 60/483 (12%)
Query: 2 ASVKEINKPHEFIFP----YYGLGQVQLKLGDFRSALTNFEKV-LEIYPDNCETLKALGH 56
A+ KE+ K +P L + L G F+ L L E L G
Sbjct: 74 AAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGL 133
Query: 57 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 116
Y+ LGQ+E AQ+ +A IDPR A + L +L A + F AR L+ +
Sbjct: 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA------LAENRFDEARALIDEVLT 187
Query: 117 EVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174
P ++ L G + G E A +++ A+ L ++ + +++
Sbjct: 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAI-------ALRPNNIAVLLALATILIEA 240
Query: 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 234
+ + D + P N + A + Q + A + L +Y+ A
Sbjct: 241 GEFEE-AEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
Query: 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294
L A NL+ + + +N+ LK A +L ++L+ +A T A
Sbjct: 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL 358
Query: 295 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354
D A LSL Y + A +L KA EL AA
Sbjct: 359 DP--DDPAALSLLGEAYL-----ALGDFEKAAEYLAKATEL--------DPENAAAR--- 400
Query: 355 VVLAEKGQF-----DVSK---DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406
+ G D S+ DL T Q ++ + L Y G F A+
Sbjct: 401 ---TQLGISKLSQGDPSEAIADLETAAQLDP------ELGRADLLLILSYLRSGQFDKAL 451
Query: 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD-AGVA 465
+ +K +A + L + +++ +A+ + P + + A +
Sbjct: 452 AAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509
Query: 466 MQK 468
+Q+
Sbjct: 510 IQE 512
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77
L + L+ GD+ AL E L YP E L LG ++ G++ +A LLR A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 78 DPRDA 82
DP D
Sbjct: 61 DPDDP 65
|
Length = 65 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 86/399 (21%), Positives = 144/399 (36%), Gaps = 42/399 (10%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 78
L + L+ G+ A+ EK E+ P E AL Y+ GQ++KA +L +AA
Sbjct: 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597
Query: 79 PRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 137
P +A++ LG + + D A+ +FK LL + +L + + +
Sbjct: 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKK---LLALQPDSALALLL--LADAYAVMKNYA 652
Query: 138 SAHQSFKDAL---GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
A S K AL D + ++ ++ K +Q H G +E
Sbjct: 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE--- 709
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
L + D AA YR L K ++L A N +++ +
Sbjct: 710 ---------GDLYLRQKDYPAAIQAYRKAL-KRAPSSQNAIKLHRALLASGNTAEAVKTL 759
Query: 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314
LK + + L +L L D+ KA + ++ D+ L N A
Sbjct: 760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA--PDNAVVL-----NNLAW 812
Query: 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 374
L E + P+ + E+A +L + + G +L EKG+ D + L +
Sbjct: 813 LYLELKDPRALE-YAERALKL-------APNIPAILDTLGWLLVEKGEADRALPLLRKAV 864
Query: 375 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
A + + +LA A G A A K L
Sbjct: 865 NIAPEA-----AAIRYHLALALLATGRKAEARKELDKLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
GD S+L +K YP + E L A G ++ G +A +LRKAA++ P D +A+
Sbjct: 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139
Query: 88 LGELLISSDTGAALDA---FKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFESAHQS 142
L GAALD F AR ++A E P E + NN+G+ +G+ E A
Sbjct: 140 L---------GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190
Query: 143 FKDA 146
A
Sbjct: 191 LLPA 194
|
Length = 257 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCK 442
+ NL + F G++ A++ Y+ L +A+ LA + + + +++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE--LDPDNAEAYYNLALAYLKLGKDYEEAL 58
Query: 443 KSLLRAIHLAP 453
+ L +A+ L P
Sbjct: 59 EDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 27/230 (11%)
Query: 530 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 589
AA R+ +Q AA+ A A + E Q R R++
Sbjct: 78 RRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA----ASAPEAAQARERRER 133
Query: 590 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAE 649
R ++ + + D E E+R + + ++D+ + AE
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE-------AE 186
Query: 650 ADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSIT 709
REE + + R+ Q + +++ + DR D
Sbjct: 187 RGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG-----D 241
Query: 710 AARRRRALSESDDDEPF-----------ERQLRDNTDELQDSDGELREND 748
R R + DD E +R+ R D + + ELRE+D
Sbjct: 242 DNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
Length = 672 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 47
Y LG LKLG + AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRK 73
+Y LG+ GD+ A F V++ YP + + L LG +LG EKA+ L++
Sbjct: 40 HYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQ 99
Query: 74 AAKIDPRDAQA 84
K P + A
Sbjct: 100 VIKRYPGSSAA 110
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 532 KIHREAAEREEQQ--NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 589
K+ ++A E E+Q+ + RQ+ Q A AE+A ++AE+ K EK+K +E K +Q
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK--AKQA 129
Query: 590 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKD 636
+ E + ++++E + +E +++ ++K +
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 6e-04
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 514 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 573
++ VE K K E ++ E++N+ + AA +A AEE ++KAEE KK
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 574 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH--SEKRRRKGGK 631
+++K + K+ E + E+ + K++ +E +E+ +++ +
Sbjct: 1686 DEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 632 RRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDR 689
+KK + ++ E E + + EE + E+ I + D++D+ D+
Sbjct: 1742 DKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 7e-04
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 530 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK--RLRQ 587
A + R+ ++ R A RQAA+ E RKA+E KK EK+K ++ +K ++
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-AEEKKKADEAKKAEEKKK 1303
Query: 588 QEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYET-- 645
+E ++ +E ++ K E + D +E+ ++ + + +++ E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 646 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEEN 685
E AEA E + DA+ E + ++ EE+
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
Length = 2084 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQI--EKAQELLRKAAK 76
LG+ + LG AL + L + DN E L L Q GQ KA+ LLR+A
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 77 IDPRDAQA 84
+DP + +A
Sbjct: 222 LDPANIRA 229
|
Length = 287 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-04
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
Query: 535 REAAEREEQQNRQRQEAARQA-ALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQ 593
ER E R+ R+ L E+ +E+ + E +LE+ + L + E
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
Query: 594 RVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMM 653
+ + R E +E+ E +R + + ++ + + E ++
Sbjct: 880 NERAS--LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Query: 654 -DYREEPEDEDASMNYREPIGQMNDQDDDVEE 684
D +E E+ S+ E N +DD EE
Sbjct: 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388
++A E Y + + N A + G+++ + + + + +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----LELDPDNAKA 70
Query: 389 WINLAHVYFAQGNFALAMKMYQNCLRKFY 417
+ NL Y+ G + A++ Y+ L
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 47
Y LG LKLGD+ AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRK 73
YY LG+ GD+ A F +V++ YP + + L LG +LG ++A L++
Sbjct: 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQ 240
Query: 74 AAKIDPRDAQA 84
K P A
Sbjct: 241 VIKRYPGTDAA 251
|
Length = 262 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 504 ASNLHLHGFDEKKINT-HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEAR 562
A LH + KK T K R AAERE NR+ ++ A AR
Sbjct: 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAERE--INREARQERAAAMARARAR 379
Query: 563 RKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSEND 615
R A + KK L +E + EE + ++T A RE S+ D
Sbjct: 380 RAAVKAKKKGL-IDASPNEDT-PSENEESKGSPPQV-EATTTAEPNREPSQED 429
|
Length = 429 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 75
L + ++ A+T+ ++ LE+ PDN E L + + + E A+++ +
Sbjct: 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696
Query: 76 KIDPRDAQAFIDLGEL-LISSDTGAALDAFKTA 107
K P+ A F G+L L D AA+ A++ A
Sbjct: 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKA 729
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77
YG G + AL + ++ PDN L+ G I ++ + ++A E L+KA +
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
Query: 78 DPRDAQAFIDLGELLI 93
DP ++L + L+
Sbjct: 370 DPNSPLLQLNLAQALL 385
|
Length = 484 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKID 78
LG + L GD+ +A+ E+V E P+ E L L Y LG + E LR+A +
Sbjct: 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279
Query: 79 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
P A + L +LL + A A R L++
Sbjct: 280 PG-ADLLLALAQLLEEQEGPEA--AQALLREQLRR 311
|
Length = 389 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.003
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 530 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 589
A ++ ++ AE +++ ++ AEEA+++AEE KK E +K E+E+K++ +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Query: 590 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 625
+ ++ E+ R A E E D+ +K+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.003
Identities = 37/184 (20%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 475 QKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK--INTHVEYCKHLLDAAK 532
++ ++ AD + E + A + A+ +EK E K DAAK
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 533 IHREAAEREEQQNRQRQEAARQA---ALAEEARRKAEEQKKYLLEKRKLEDEQKRL---R 586
E ++ ++ ++ +E ++A A A++KA+E KK EK+K ++ +K+ +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 587 QQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 646
+ +E ++ +E ++ K E + D+ + E ++ K++ ++ ++ +
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Query: 647 YAEA 650
AEA
Sbjct: 1505 AAEA 1508
|
Length = 2084 |
| >gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262
A L ++ D A + L + D RL + + L I+ + LK +
Sbjct: 269 YAERLIRLGDHDEAQEIIEDALKRQWD--PRLCRLIPRLRPGDPEPL-IKAAEKWLKQHP 325
Query: 263 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 305
+ P LS LG L LKN W KA E AA YA L+
Sbjct: 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368
|
Length = 400 |
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 514 EKKINTHVEY-CKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 572
++IN E +++L+ A ++ AE+ +++ R+R E+ + L +A+ +AE +K+ +
Sbjct: 8 IQEINREAEQKIEYILEEA---QKEAEKIKEEARKRAESKAEWIL-RKAKTQAELEKQRI 63
Query: 573 LEKRKLEDEQKRLRQQEEHFQRVKEQWRS 601
+ KLE +KRL QEE V E R
Sbjct: 64 IANAKLEVRRKRLAVQEELISEVLEAVRE 92
|
Length = 198 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 37 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 69
+EK LE+ P+N E L + + LGQ ++A +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDP 79
LG IY+QLG E+A+E KA ++DP
Sbjct: 7 LGQIYLQLGDYEEAKEYYEKALELDP 32
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 760 | |||
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.98 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.95 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.95 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.95 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.93 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.93 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.92 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.91 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.9 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.9 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.88 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.87 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.87 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.87 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.86 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.86 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.85 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.85 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.85 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.83 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.83 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.79 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.76 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.75 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.73 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.72 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.7 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.66 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.55 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.36 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.27 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.27 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.24 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.1 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.09 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.08 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.0 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.98 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.96 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.91 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.89 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.86 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.86 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.85 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.84 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.8 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.8 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.79 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.79 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.75 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.75 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.74 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.71 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.71 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.62 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.6 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.57 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.54 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.5 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.48 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.47 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.47 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.44 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.44 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.42 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.41 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.41 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.34 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.32 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.29 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.29 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.27 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.25 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.24 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.18 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.18 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.17 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.16 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.03 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.99 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.93 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.91 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.9 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.88 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.88 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.87 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.86 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.82 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.74 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.72 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.71 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.68 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.6 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.58 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.57 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.56 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.55 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.55 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.53 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.52 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.45 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.44 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.39 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.35 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.33 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.31 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.23 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.16 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.11 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.05 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.99 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.91 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.88 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.88 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.87 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.75 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.75 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.68 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.62 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.58 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.57 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.57 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.52 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.36 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.36 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.31 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.19 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.18 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.16 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.98 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.94 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.9 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.85 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.83 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.82 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.81 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.81 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.77 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.76 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.75 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.69 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 95.57 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.56 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.46 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.44 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.42 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.42 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.35 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.29 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.21 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.13 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.05 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.7 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.69 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.67 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.55 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 94.55 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.5 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.41 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 94.37 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.34 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.19 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.08 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.04 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 93.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.87 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 93.74 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.7 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 93.63 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 93.62 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.57 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.47 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.42 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 93.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.16 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 92.8 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 92.61 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.53 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 92.48 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.41 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.09 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 92.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.98 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 91.97 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.53 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.28 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.25 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.12 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.09 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.04 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 90.35 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 90.27 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 90.11 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 89.8 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 89.5 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 89.33 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 89.27 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 89.17 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 88.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 88.36 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.45 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.06 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 86.82 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.76 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.61 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 86.53 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.14 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 86.06 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.5 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 85.25 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 84.79 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.88 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 83.55 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 83.27 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 83.18 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 82.7 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 82.65 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.34 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 82.11 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 82.08 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 81.95 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 81.33 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 80.75 |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=533.43 Aligned_cols=563 Identities=39% Similarity=0.651 Sum_probs=511.0
Q ss_pred hhhcCCCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCC
Q 004339 5 KEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEKAQELLRKAAKIDP 79 (760)
Q Consensus 5 k~i~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p 79 (760)
+++..+|++ +.+++++|++|+..|++..|+.+|++++...|++.+++..||.+|...+ ..+.|..++.+++...|
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence 456667776 8899999999999999999999999999999999999999999999886 67899999999999999
Q ss_pred CcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhccc
Q 004339 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 159 (760)
Q Consensus 80 ~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 159 (760)
.+..+|+.++.++.+++...++.+|..|+.+........++++++++|..++..|++..|...|..++......
T Consensus 412 ~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~------ 485 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV------ 485 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh------
Confidence 99999999999999999888899999999888887777899999999999999999999999999998731000
Q ss_pred chhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 004339 160 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239 (760)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 239 (760)
...- .....+.+..|++|+++...+++..|...|..+++.+|.++++++++|.
T Consensus 486 --------------------------~n~d-e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 486 --------------------------ANKD-EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred --------------------------cCcc-ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 0000 0012236679999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-CChHHHHHHHHHHHHHHHhhh
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNE 318 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~lg~~~y~~~~~~~ 318 (760)
+....++..+|..++..++..+..+|.++..+|.+|+....|..|..-|..++..... .++++++.||++ |+..+...
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~-~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV-YIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH-HHHHhccc
Confidence 9999999999999999999999999999999999999999999999988888775433 389999999999 99999999
Q ss_pred hcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 004339 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 398 (760)
Q Consensus 319 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~ 398 (760)
..++..+.+.+.+|+++|.++|..+|.|.++.+++|.|+...|++..|+.+|.++.+... +++.+|+|+|+||+.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hCCceeeeHHHHHHH
Confidence 999988999999999999999999999999999999999999999999999999999875 689999999999999
Q ss_pred cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhh
Q 004339 399 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTR 478 (760)
Q Consensus 399 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~ 478 (760)
+|+|..|+++|+.++..|...+++.++.+||++|+..|.+.+|..++..|+++.|.++.+.||+|.++.+.+...+....
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 004339 479 RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR----QRQEAARQ 554 (760)
Q Consensus 479 ~~l~~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~----~k~e~~~~ 554 (760)
+++.++..++..++.|+++|..|....+. .|+...+.++++.|.++++++..+..+++++.++.+ .+.+.+++
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~ 849 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALI 849 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865 899999999999999999999999998876554443 35567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcCchhhhh
Q 004339 555 AALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRR 609 (760)
Q Consensus 555 ~~~~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (760)
.++.+|++|+++|++..++.++++.++.++.....+.+.+..++|++.....+++
T Consensus 850 ~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~ 904 (1018)
T KOG2002|consen 850 EKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKR 904 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCC
Confidence 8888889999999888888888888888877777888888888998877665443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=380.97 Aligned_cols=398 Identities=20% Similarity=0.216 Sum_probs=350.5
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+-+++.+|....+|-.+|.++...|+++.|+.+|+.++++.|++.++|.++|.++...|+...|..+|..+++++|....
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c 185 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC 185 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh
Confidence 34556666667777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
+...+|.++. .|+..+|..+|.+|+...|.. +.+|.+||.++..+|+...|+..|.+++.
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-----AiawsnLg~~f~~~Gei~~aiq~y~eAvk-------------- 246 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-----AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-------------- 246 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCce-----eeeehhcchHHhhcchHHHHHHHHHHhhc--------------
Confidence 7777777666 667777777777777776665 56677777777777777777777777765
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 242 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 242 (760)
++|..+.+|++||.+|...+.|+.|+..|.+++...|++..++-++|.+|+
T Consensus 247 -----------------------------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 247 -----------------------------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred -----------------------------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 788999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
.+|.++-|+..|++++.+.|+.+.++.++|..+...|+..+|..+|.+++.+.|. .+.+..+||++ |...
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni-~~E~-------- 367 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNI-YREQ-------- 367 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHH-HHHh--------
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999 9999
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
|.++.|..+|.+++...|....++++||.+|..+|++++|+.+|+.++.+.| ..++++.++|.+|-.+|+.
T Consensus 368 ----~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-----~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 368 ----GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-----TFADALSNMGNTYKEMGDV 438 (966)
T ss_pred ----ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-----hHHHHHHhcchHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+.|+..|.+|+.. +|.-++++.+||.+|...|+..+|+..|+.++++.|+.+.++.|++.|++...
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 9999999999995 78889999999999999999999999999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=366.72 Aligned_cols=447 Identities=20% Similarity=0.194 Sum_probs=373.8
Q ss_pred hhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 3 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 3 a~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
.++.+...+......+.+|.-.++.|+|.+|...+..+...+|.+.+.+..++.++++..+++.....-..+++.+|...
T Consensus 37 v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~a 116 (966)
T KOG4626|consen 37 VLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGA 116 (966)
T ss_pred HHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHH
Confidence 34555566666667888888888888888888888888887777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
++|.++|.++. .|++..|+..|+.++++.|+. .++|.++|.++...|+...|..+|..+++++|...-......
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~f-----ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKF-----IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh-----hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 77777777766 667777777777777777765 677777777777777777777777777776663322222111
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
.. .-..+.+.++...+.+++...|..+.+|.+||.++..+|+...|+..|.++++++|.+.++|++||.+|
T Consensus 192 nL---------lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 192 NL---------LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY 262 (966)
T ss_pred HH---------HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH
Confidence 11 111122223333334444578889999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcC
Q 004339 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
...+.++.|+.+|.+++.+.|++..++.++|.+|..+|..+-|+.+|++++...|. .+.++.+|++. +-..
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanA-Lkd~------- 333 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANA-LKDK------- 333 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHH-HHhc-------
Confidence 99999999999999999999999999999999999999999999999999999998 89999999999 8777
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 401 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~ 401 (760)
|+..+|..+|.+++.+.|+++.++++||.+|.++|.++.|..+|.++++..| ..+.++.+||.+|-++|+
T Consensus 334 -----G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-----~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 334 -----GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-----EFAAAHNNLASIYKQQGN 403 (966)
T ss_pred -----cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-----hhhhhhhhHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCH
Q 004339 402 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTA 481 (760)
Q Consensus 402 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l 481 (760)
+++|+..|+.++.. .|.-++++.++|.+|-.+|+...|+.+|.+|+.++|....+..|||.+|...|
T Consensus 404 l~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG----------- 470 (966)
T KOG4626|consen 404 LDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG----------- 470 (966)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-----------
Confidence 99999999999996 78889999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHH
Q 004339 482 DEVRSTVAELENAVR 496 (760)
Q Consensus 482 ~~~~~a~~~l~~A~~ 496 (760)
.+..|+..|+.|++
T Consensus 471 -ni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 471 -NIPEAIQSYRTALK 484 (966)
T ss_pred -CcHHHHHHHHHHHc
Confidence 55566666666654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=355.66 Aligned_cols=410 Identities=20% Similarity=0.220 Sum_probs=279.6
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
.+...|+++.++++.|.+.+..|+|..|+.+|..++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.++.+
T Consensus 156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 356889999999999999999999999999999999999975 6778899999999999999999999999999999999
Q ss_pred HHHHHHHHc-cC---CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 85 FIDLGELLI-SS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 85 ~~~la~~~~-~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
+..||.+-. .. .+..++..+.++...++.+ |.++..|+..|+..|+|..+..+...++....
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n-----P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--------- 301 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN-----PVALNHLANHFYFKKDYERVWHLAEHAIKNTE--------- 301 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC-----cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------
Confidence 999998755 22 5889999999999999987 79999999999999999999999988876321
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHH
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAA 239 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~ 239 (760)
..+..+..+|++|++|..+|+|++|..+|..+++.+|++ ...++.+|+
T Consensus 302 -------------------------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 302 -------------------------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred -------------------------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 122233455555555555555555555555555555544 445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC----CHHHH-------------------------------
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKA------------------------------- 284 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A------------------------------- 284 (760)
+|+..|++..|..+|++++...|++..+...||.+|...+ ..+.|
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH
Confidence 5555555555555555555555555555544444444332 12222
Q ss_pred --HHHHHHhhhc----CCCCChHHHHHHHHHHHHHHHhhhh---------------cCc-----------------hHHh
Q 004339 285 --KETFRAASDA----TDGKDSYATLSLGNWNYFAALRNEK---------------RAP-----------------KLEA 326 (760)
Q Consensus 285 --~~~~~~al~~----~~~~~~~~~~~lg~~~y~~~~~~~~---------------~~~-----------------~~~~ 326 (760)
+.+|..++.+ .....+..++++|.. ++....... .++ ....
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl-hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASL-HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH-HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 3333333321 011133333344443 222110000 000 0123
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
+++..|...|..++..+|.++.++..+|.+....+...+|..++..++..+. .+|.+|..+|.+|+....+..|.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-----~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-----SNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-----CCcHHHHHHHHHHHhhhhhcccc
Confidence 6888899999999999999999999999888888999999999999999886 66777777777666666665555
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHH------------hccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYE------------AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
.-|..+++.....+|+.++..||.+|+. .+.+.+|++.|.++|..+|.|..+-..+|.|+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVL 656 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhh
Confidence 5555555543333445555555555543 23445555555555555555555444444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=324.64 Aligned_cols=388 Identities=16% Similarity=0.137 Sum_probs=324.7
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
+..+..+|..++..|+|+.|+.+|++++...|+ +..+.++|.||..+|++++|+..|.+++.++|++..+|+.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcC-------------------------CCCCHHHHHHHHHHH-----------------
Q 004339 94 -SSDTGAALDAFKTARTLLKKAG-------------------------EEVPIEVLNNIGVIH----------------- 130 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~-------------------------~~~~~~~~~~la~~~----------------- 130 (760)
.|++++|+..|..+..+.+... .+.....+..++..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 8899999988876654432110 000000001111111
Q ss_pred -------------------HHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCcc
Q 004339 131 -------------------FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 191 (760)
Q Consensus 131 -------------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (760)
...+.|++|+.+|++++..+ .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~----------------------------------------~ 325 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG----------------------------------------K 325 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC----------------------------------------C
Confidence 01133444444444444311 1
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
..|....++..+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+.+|.+++..+|+++.+++.+
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
|.++...|++++|+.+|.+++.+.|. ...+++.+|.+ ++.. |+++.|+..|.+++...|.++.+++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~-~~~~------------g~~~eA~~~~~~al~~~P~~~~~~~ 471 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT-QYKE------------GSIASSMATFRRCKKNFPEAPDVYN 471 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999988 88899999999 9988 9999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYF-AQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
.+|.++...|++++|+..|.+++.+.|..... .....+++.+.+++ ..|++++|+.+|++++.. .|.+..++..+|
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la 549 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 99999999999999999999999999832110 11222334444444 479999999999999996 677788999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.++...|++++|+.+|++++.+.+.....
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999998876553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=344.86 Aligned_cols=428 Identities=19% Similarity=0.190 Sum_probs=382.4
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.+...|.++..++.+|.++...|++++|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+..++
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
..++.++. .|++.+|+..|.+++...|.. ...+..++.+|...|++++|+.++..++...|.........
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 607 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQE-----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML---- 607 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH----
Confidence 99999988 889999999999999998876 78899999999999999999999999988665432211111
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 244 (760)
..+....+.+..++..+...+...|.++.+++.+|.++...|++++|+.+|.+++..+|.+..++..++.++...
T Consensus 608 -----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 608 -----GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 111112233333444444445567888899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 245 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
|++++|+.++..+....|.++.++..+|.++...|++++|+..|.+++...|.. ..+..++.+ +...
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~~~---------- 749 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LLAS---------- 749 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HHHC----------
Confidence 999999999999999999999999999999999999999999999999988763 667778888 8888
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|++.+|+..+.+++..+|+++.+++.+|.++...|++++|+.+|++++...| .++.++.++|.++...|+ .+
T Consensus 750 --g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 750 --GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCc-HH
Confidence 9999999999999999999999999999999999999999999999999998 789999999999999999 88
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
|+.++++++.. .|.++.++..+|.++...|++++|+.+|++++..+|.++.++++++.++...|
T Consensus 822 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 822 ALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 99999999996 67778899999999999999999999999999999999999999999987766
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=341.31 Aligned_cols=446 Identities=19% Similarity=0.160 Sum_probs=375.9
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++...|......+.++..++..|++++|+..+.+++...|.++.++..+|.++...|++++|+.+|.+++..+|.++.+
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 45567888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
++.++.++. .|++..|+..|.+++...|.+ ..++..++.++...|++++|+.+|.+++..+|.........
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--- 573 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL--- 573 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHH---
Confidence 999999988 789999999999999998886 78999999999999999999999999988765322111100
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.......+.+..++..+...+...|.++.+++.+|.++...|++++|+..|.+++..+|.++.++..++.++..
T Consensus 574 ------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 574 ------AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred ------HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 01111122222333333334446677788888899999999999999999999998888888888899999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCch
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 323 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~ 323 (760)
.|++++|+.+|.+++..+|++..++..++.++...|++++|+.++..+....|. .+..+..+|.+ +...
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--------- 716 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDL-YLRQ--------- 716 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHH-HHHC---------
Confidence 999999999999999988988889999999999999999999999888887776 77778888888 8887
Q ss_pred HHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 324 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 324 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
|+++.|+..|.+++...|++ .++..++.++...|++.+|+..+.+++...| .++.+++.+|.+|...|+++
T Consensus 717 ---g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 717 ---KDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHP-----NDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred ---CCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCcCHH
Confidence 89999999999999888877 6777888888999999999999999998888 77888899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 483 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~ 483 (760)
+|+.+|++++.. .|+++.++..+|.++...|+ .+|+.++++++.+.|+++.++.++|.++...+
T Consensus 788 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------- 851 (899)
T TIGR02917 788 KAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG------------- 851 (899)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-------------
Confidence 999999999886 56778888899999999988 77999999999999998888888888876655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 004339 484 VRSTVAELENAVRVFSHLSAASN 506 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~~ 506 (760)
.+++|+.+|.......+
T Consensus 852 ------~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 852 ------EADRALPLLRKAVNIAP 868 (899)
T ss_pred ------CHHHHHHHHHHHHhhCC
Confidence 45666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=331.05 Aligned_cols=488 Identities=14% Similarity=0.113 Sum_probs=382.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH----------------HHHHHHHHhcCCHHHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL----------------KALGHIYVQLGQIEKAQ 68 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------------~~la~~~~~~g~~~~A~ 68 (760)
+.+..+|+++.+++.++.+++..|++++|...++++++++|+++.++ +.+|.++...|++++|+
T Consensus 53 kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~ 132 (1157)
T PRK11447 53 RLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEAL 132 (1157)
T ss_pred HHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHH
Confidence 55678999999999999999999999999999999999999997764 56677899999999999
Q ss_pred HHHHHHHhcCCCcHHHHH-HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 69 ELLRKAAKIDPRDAQAFI-DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 69 ~~~~~al~~~p~~~~~~~-~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
..|.+++..+|.+...-. .+..+.. .+++.+|+..|++++...|.+ +.++..+|.+++..|++++|+..|.++
T Consensus 133 ~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~-----~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 133 ASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN-----TGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999988764322 2233333 589999999999999999997 899999999999999999999999998
Q ss_pred hcccchhh--------hhcc------c---chh---------------hhhh-------------hhhHHHHHHhHHhhh
Q 004339 147 LGDGIWLT--------LLDS------K---TKT---------------YVID-------------ASASMLQFKDMQLFH 181 (760)
Q Consensus 147 l~~~p~~~--------~~~~------~---~~~---------------~~~~-------------~~~~~~~~~~~~~~~ 181 (760)
+...+... .+.. . ... ..+. ............+..
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence 76543110 0000 0 000 0000 000111122334555
Q ss_pred hhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH--------------HHHHHHHHHHHcCCH
Q 004339 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD--------------AYLRLAAIAKARNNL 247 (760)
Q Consensus 182 ~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~ 247 (760)
++..+...+..+|.++.+++.+|.++...|++++|+.+|++++..+|.+.. ....+|.++...|++
T Consensus 288 A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence 666777777889999999999999999999999999999999999987642 223557888999999
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhh---------
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE--------- 318 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~--------- 318 (760)
++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++...|. +..++..++.+ |... ...
T Consensus 368 ~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l-~~~~-~~~~A~~~l~~l 444 (1157)
T PRK11447 368 AQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL-YRQQ-SPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHhc-CHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999887 67777777766 5321 000
Q ss_pred ----------------------hcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004339 319 ----------------------KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 319 ----------------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 376 (760)
........|++++|+.+|++++..+|+++.+++.+|.+|...|++++|+..|++++..
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0011124599999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------hh-cC
Q 004339 377 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-------------------------------------KF-YY 418 (760)
Q Consensus 377 ~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------------------------~~-~~ 418 (760)
.| .++.+++.+|.++...+++++|+..++++.. .+ ..
T Consensus 525 ~P-----~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 525 KP-----NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred CC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 98 7788887777777777777777666554210 00 25
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHh-----HHhh----------hhcCHHH
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS-----TLQK----------TRRTADE 483 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----~l~~----------~~~~l~~ 483 (760)
|.++.+++.+|.+|...|++++|+.+|++++.+.|+++.++++++.+|...+.. .+.. ....+..
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 667888999999999999999999999999999999999999999998665531 1111 1112234
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 004339 484 VRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
+....+.+++|+.+|..+....
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhC
Confidence 4445566777777777766544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=311.84 Aligned_cols=415 Identities=13% Similarity=0.091 Sum_probs=333.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
+..+..+|..++..|+|++|+.+|.+++.+.|+ +..|.++|.||. .|++..|+..+.+++.+.|.. ..+|+.+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-----~~a~~~~ 200 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-----SKALNRR 200 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-----HHHHHHH
Confidence 456889999999999999999999999999995 788999999999 899999999999999999987 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh-----hhhHHHH---------HHhHHhhhhh------hcc
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID-----ASASMLQ---------FKDMQLFHRF------END 186 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~~l------~~~ 186 (760)
|.+|..+|++++|+..|..++...+.............+. .....+. .....++..+ ..+
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 9999999999999999987765543211100000000000 0000000 0000111100 011
Q ss_pred CCCccCCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004339 187 GNHVELPWNKVTVLFNLARLLE---QIHDTVAASVLYRLILFK---YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 260 (760)
Q Consensus 187 ~~~~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 260 (760)
......++.....+..++..+. ..+.|++|+.+|.+++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1222334444445555554433 347899999999999976 4778889999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 261 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 261 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
+|.++.+++.+|.++...|++++|+.+|.+++...|. ++.+++.+|.+ |+.. |+++.|+.+|++++
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~kal 426 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQL-HFIK------------GEFAQAGKDYQKSI 426 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 88999999999 9998 99999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 341 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
.++|++..++..+|.++...|++++|+..|.+++...| .++.++..+|.++..+|++++|+..|++++...+...
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-----EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999998 8899999999999999999999999999999743321
Q ss_pred c----HHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHH
Q 004339 421 D----AQILLYLARTHY-EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 495 (760)
Q Consensus 421 ~----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~ 495 (760)
. ...+...+.+++ ..|++++|+.+|++++.++|++..++..+|.++...| ++..|+..++.|+
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g------------~~~eAi~~~e~A~ 569 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG------------DVDEALKLFERAA 569 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc------------CHHHHHHHHHHHH
Confidence 1 222333344444 4799999999999999999999999999999988777 5666666666666
Q ss_pred HHHH
Q 004339 496 RVFS 499 (760)
Q Consensus 496 ~~~~ 499 (760)
++..
T Consensus 570 ~l~~ 573 (615)
T TIGR00990 570 ELAR 573 (615)
T ss_pred HHhc
Confidence 5543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=322.60 Aligned_cols=433 Identities=16% Similarity=0.140 Sum_probs=347.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH--------------
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-------------- 84 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------- 84 (760)
.+|.+++..|++++|+..|++++..+|+++.++..+|.+|...|++++|+.+|++++..+|++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 568999999999999999999999999999999999999999999999999999999999976431
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
...+|.++. .|++.+|+..|++++.+.|.+ +.+++.+|.+|...|++++|+.+|++++...|............
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTD-----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 233466666 789999999999999999986 78999999999999999999999999999887543222111111
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCC-Ccc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGN-HVE--LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 240 (760)
.... . .-....++..+..... ... ........+..+|.++...|++++|+.+|++++..+|+++.+++.+|.+
T Consensus 429 ~~~~--~--~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 429 YRQQ--S--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHhc--C--HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0000 0 0000111111100000 000 0011134567899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCCh---------HHHHHHHHHHH
Q 004339 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS---------YATLSLGNWNY 311 (760)
Q Consensus 241 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~lg~~~y 311 (760)
|...|++++|+..|++++...|.++.+++.++.++...+++.+|+.++..+......... ...+.++.. +
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-L 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999887543222111 112344555 5
Q ss_pred HHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHH
Q 004339 312 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 391 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 391 (760)
... |++++|+.+++ ..|.++.++..+|.++...|++++|+.+|.+++...| .++.+++.
T Consensus 584 ~~~------------G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~ 642 (1157)
T PRK11447 584 RDS------------GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLG 642 (1157)
T ss_pred HHC------------CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Confidence 555 99999999877 5899999999999999999999999999999999999 88999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh------HHhhHHHH
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT------LRFDAGVA 465 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~ 465 (760)
+|.+|...|++++|+..|+.++.. .|.++.++..+|.++...|++++|+.+|++++...|.++. ++..+|.+
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 999999999999999999999885 6677889999999999999999999999999999877654 34444555
Q ss_pred HHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 004339 466 MQKFSASTLQKTRRTADEVRSTVAELENAVR 496 (760)
Q Consensus 466 ~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~ 496 (760)
+...| +...|+..|+.|+.
T Consensus 721 ~~~~G------------~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 721 EAQTG------------QPQQALETYKDAMV 739 (1157)
T ss_pred HHHcC------------CHHHHHHHHHHHHh
Confidence 54444 45566666666643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=250.65 Aligned_cols=539 Identities=15% Similarity=0.191 Sum_probs=376.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHh
Q 004339 35 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKK 113 (760)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~ 113 (760)
.-|+..|+.+.-+...|...|..-..++++..|..+|++|+..+..+...|+.++.+-+ ......|..++.+|+++.|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44666666666777888899999889999999999999999998888889999888877 45888999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCC
Q 004339 114 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 193 (760)
Q Consensus 114 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (760)
. ..+|+....+--.+|+...|.++|++.+...|
T Consensus 140 V-----dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P------------------------------------------ 172 (677)
T KOG1915|consen 140 V-----DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP------------------------------------------ 172 (677)
T ss_pred H-----HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC------------------------------------------
Confidence 6 68888888888889999999999999887544
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALSM 270 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 270 (760)
...+|......-.+.+..+.|..+|++.+-.+| .+..|+..+..-...|+..-|..+|..++....++.. ++..
T Consensus 173 --~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfva 249 (677)
T KOG1915|consen 173 --DEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVA 249 (677)
T ss_pred --cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334566666666666677777777777776665 3556677777777777777777777777665544332 4445
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHH---------------------HHHHHHhhhhcC--------
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW---------------------NYFAALRNEKRA-------- 321 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~---------------------~y~~~~~~~~~~-------- 321 (760)
.+..-..+..++.|..+|+-++...|.+...-++.--.. .|-..+....-+
T Consensus 250 FA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 250 FAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 555555666677777777766666665432222110000 000000000000
Q ss_pred -chHHhhcHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 004339 322 -PKLEATHLEKAKELYTRVIVQHTSN---------LYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 390 (760)
Q Consensus 322 -~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 390 (760)
.....|+.+.-.+.|++++...|.. ++.|.+++..- ....+.+.+.++|+.++.+.|+..| +.+.+|+
T Consensus 330 rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF-tFaKiWl 408 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF-TFAKIWL 408 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc-hHHHHHH
Confidence 0012389999999999999988863 33444444332 2678999999999999999998777 6799999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
..|...+.+.+...|.+++-.|+.++|.+. ++-....+-.++++++.+..+|++.+...|.+..+|...|.+-..+|
T Consensus 409 myA~feIRq~~l~~ARkiLG~AIG~cPK~K---lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 409 MYAQFEIRQLNLTGARKILGNAIGKCPKDK---LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhccCCchh---HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999875544 34444455588999999999999999999999999999998766555
Q ss_pred Hh-------HHhhhhcCHH----------HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004339 471 AS-------TLQKTRRTAD----------EVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKI 533 (760)
Q Consensus 471 ~~-------~l~~~~~~l~----------~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (760)
.. .++..+..++ ++.-+.++++.|..+|++|....++.+++++................-
T Consensus 486 dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~--- 562 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDL--- 562 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccch---
Confidence 42 2344444433 788889999999999999999998877777666443321111110000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccC
Q 004339 534 HREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSE 613 (760)
Q Consensus 534 ~~~~~~~~e~~~~~k~e~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (760)
++.+ -...-...+|+.=+ +.- .-.+.. .-.|++..+.|.|+.+ +
T Consensus 563 ----~~~e--~~~~~~~~AR~ife---------rAn---~~~k~~--------~~KeeR~~LLEaw~~~----------E 606 (677)
T KOG1915|consen 563 ----AELE--ITDENIKRARKIFE---------RAN---TYLKES--------TPKEERLMLLEAWKNM----------E 606 (677)
T ss_pred ----hhhh--cchhHHHHHHHHHH---------HHH---HHHHhc--------CcHHHHHHHHHHHHHH----------H
Confidence 0000 00001111111110 000 000000 0023348899999998 5
Q ss_pred CCCccccccchhcccCccccccccccCccccchhhhhcccCCCCCCcchhhccCC
Q 004339 614 NDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNY 668 (760)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (760)
...++.++.+.+.+++||+.||++.++.++| +.+|+++.||. ||+|..+.++.
T Consensus 607 ~~~G~~~d~~~V~s~mPk~vKKrr~~~~edG-~~~~EEy~DYi-FPed~~~~~~~ 659 (677)
T KOG1915|consen 607 ETFGTEGDVERVQSKMPKKVKKRRKIQREDG-DTEYEEYFDYI-FPEDASATKNL 659 (677)
T ss_pred HhcCchhhHHHHHHhccHHHHhhhhhhcccC-chhHHHHHHhc-CccccccCcch
Confidence 5667777788899999999999999999999 88999999999 99998666666
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-29 Score=282.05 Aligned_cols=340 Identities=12% Similarity=0.017 Sum_probs=309.1
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
...++...+...+..++..|++..|+.++..++...|.++.+++.+|.+....|+++.|+..|++++.++|+++.++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l 116 (656)
T PRK15174 37 DSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV 116 (656)
T ss_pred hhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 33445556777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
|.++. .|+++.|+..|.+++.+.|.+ +.++..+|.++...|++++|+..+.+++.
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g~~~eA~~~~~~~~~------------------- 172 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMDKELQAISLARTQAQ------------------- 172 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHH-------------------
Confidence 99988 889999999999999999987 89999999999999999999999998876
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcCC
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~ 246 (760)
..|..+.++..++ .+...|++++|+..+..++...| ........++.++...|+
T Consensus 173 ------------------------~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~ 227 (656)
T PRK15174 173 ------------------------EVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK 227 (656)
T ss_pred ------------------------hCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC
Confidence 4556666666654 47889999999999999998876 344455667888999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH----HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK----AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
+++|+..|.+++..+|+++.++..+|.++...|++.+ |+..|++++...|. +..++..+|.+ +...
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~-l~~~-------- 297 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADA-LIRT-------- 297 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHC--------
Confidence 9999999999999999999999999999999999985 89999999999988 88999999999 9988
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
|+++.|+.+|++++..+|+++.++..+|.++...|++++|+..|.+++...| ..+.++..+|.++...|++
T Consensus 298 ----g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-----~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 298 ----GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-----VTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999998 6677777789999999999
Q ss_pred HHHHHHHHHHHhhh
Q 004339 403 ALAMKMYQNCLRKF 416 (760)
Q Consensus 403 ~~A~~~~~~al~~~ 416 (760)
++|+..|++++...
T Consensus 369 deA~~~l~~al~~~ 382 (656)
T PRK15174 369 SEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999973
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-29 Score=282.07 Aligned_cols=364 Identities=14% Similarity=0.070 Sum_probs=326.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhH
Q 004339 24 QLKLGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGA 99 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~ 99 (760)
++++.+|+.-.-+|...-+.. .++...+...+..+.+.|++..|+..+..++...|.++.++..+|.+.. .|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 345556665555555443332 3355667778888999999999999999999999999999999999877 889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHh
Q 004339 100 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179 (760)
Q Consensus 100 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (760)
|+..|++++.+.|.+ +.++..+|.++...|+++.|+..|.+++.
T Consensus 95 A~~~l~~~l~~~P~~-----~~a~~~la~~l~~~g~~~~Ai~~l~~Al~------------------------------- 138 (656)
T PRK15174 95 VLQVVNKLLAVNVCQ-----PEDVLLVASVLLKSKQYATVADLAEQAWL------------------------------- 138 (656)
T ss_pred HHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------
Confidence 999999999999997 89999999999999999999999999987
Q ss_pred hhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 180 ~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
..|.++.++..++.++...|++++|+..+..++...|....++..++ .+...|++++|+..+..++.
T Consensus 139 ------------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 139 ------------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred ------------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999999999998887765 47899999999999999999
Q ss_pred HcCC-ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH----HHH
Q 004339 260 VNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK----AKE 334 (760)
Q Consensus 260 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~----A~~ 334 (760)
.+|. .......++.++...|++.+|+..|.+++...|. ++.++..+|.+ |... |+++. |+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~-l~~~------------G~~~eA~~~A~~ 271 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLA-YYQS------------GRSREAKLQAAE 271 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH-HHHc------------CCchhhHHHHHH
Confidence 8763 3445566788999999999999999999999887 88999999999 8888 99885 899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 335 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 335 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
.|++++..+|+++.++..+|.++...|++++|+.+|++++...| .++.++..+|.++...|++++|+..|++++.
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-----~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-----DLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 8899999999999999999999999999998
Q ss_pred hhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 415 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 415 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
. .|.++.++..+|.++...|++++|+..|++++...|++..
T Consensus 347 ~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 347 E--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred h--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 6 5666777778899999999999999999999999998853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=280.40 Aligned_cols=414 Identities=13% Similarity=0.027 Sum_probs=346.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
..|-++....-...++...|++.+|+..|.+++...|....++..+|.++...|++.+|+.+|++++.++|.++.++..+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44556666677788889999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
+.++. .|++.+|+..+.+++...|.+ +. +..+|.++...|++..|+..|++++.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~-----~~-~~~la~~l~~~g~~~~Al~~l~~al~------------------- 144 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDK-----AN-LLALAYVYKRAGRHWDELRAMTQALP------------------- 144 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-----HH-HHHHHHHHHHCCCHHHHHHHHHHHHH-------------------
Confidence 99988 889999999999999999987 67 99999999999999999999999998
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH-----HHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD-----AYLRLAAIAK 242 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~ 242 (760)
..|.++.+++.++.++...+..+.|+..+.++.. .|.... ....+..++.
T Consensus 145 ------------------------~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 145 ------------------------RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred ------------------------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhc
Confidence 6778999999999999999999999999987775 554211 1222222222
Q ss_pred -----HcCCH---HHHHHHHHHHHHHcCCChHH-------HHH-HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH
Q 004339 243 -----ARNNL---QLSIELVNEALKVNGKYPNA-------LSM-LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 306 (760)
Q Consensus 243 -----~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l 306 (760)
..+++ ++|+..++.++...|.++.. ... ++ +++..|++.+|+..|++++...+.....+...+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 22334 78999999999775554432 122 34 346779999999999999988654344455557
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC--
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-- 380 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 380 (760)
|.+ |+.. |++++|+.+|++++..+|.+ ...+..++.++...|++++|+.++..+....|..
T Consensus 279 a~~-yl~~------------g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 279 ASA-YLKL------------HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred HHH-HHhc------------CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 888 8888 99999999999999988876 4567778888999999999999999999987721
Q ss_pred ------CCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 381 ------VFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 381 ------~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..|+ ...++..+|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++.+|+..|++++.++
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 1122 2457789999999999999999999999996 67889999999999999999999999999999999
Q ss_pred CCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 453 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 453 p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
|++..+++.+|.++...+ .+..|..++..+....|.
T Consensus 424 Pd~~~l~~~~a~~al~~~-------------------~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQ-------------------EWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CCChHHHHHHHHHHHHhC-------------------CHHHHHHHHHHHHHhCCC
Confidence 999999999998876555 477777777777776655
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=272.91 Aligned_cols=252 Identities=12% Similarity=0.013 Sum_probs=189.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 004339 230 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 309 (760)
Q Consensus 230 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~ 309 (760)
++.+|+.+|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|.+++...|. ...++.+|.+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS--NEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHHHH
Confidence 78888999988887 788889998888888888754 3556677777889999999999887766443 3456677777
Q ss_pred HHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHH
Q 004339 310 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 389 (760)
Q Consensus 310 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 389 (760)
+... |++..|+.+|.+++..+|.+...+..++..+...|++++|+..|.+++...| + +.++
T Consensus 552 -ll~~------------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~-~~a~ 612 (987)
T PRK09782 552 -AQAA------------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S-ANAY 612 (987)
T ss_pred -HHHC------------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C-HHHH
Confidence 7777 8888888888888888887777776666666677888888888888888887 5 7778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
.++|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+.+|.+++.++|+++.+++++|.++...
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888886 6777888888888888888888888888888888888888888888887765
Q ss_pred HHhH-----Hhh----------hhcCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004339 470 SAST-----LQK----------TRRTADEVRSTVAELENAVRVFSHLSAASN 506 (760)
Q Consensus 470 ~~~~-----l~~----------~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~ 506 (760)
|... +.. ...+..++..+...+..|++.+.+.....+
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 5421 111 122223555555566666666665554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=236.48 Aligned_cols=423 Identities=16% Similarity=0.123 Sum_probs=300.9
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
+..+-..|.-++..|.|++||.+|..+|.+.|+.+..|.+++.||...|++.+-++...++++++|++..+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--c---chhhhhcccchhhhhhh
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD--G---IWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~---p~~~~~~~~~~~~~~~~ 167 (760)
.|++.+|+.-..- +.++..... ..+-..+-+++-. .|......-+.. . |...++..
T Consensus 195 ~lg~~~eal~D~tv-~ci~~~F~n---~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~s--------- 256 (606)
T KOG0547|consen 195 QLGKFDEALFDVTV-LCILEGFQN---ASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIAS--------- 256 (606)
T ss_pred hhccHHHHHHhhhH-HHHhhhccc---chhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHH---------
Confidence 7899998865543 222222110 1111111122221 222223333321 1 11111111
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHH--HHHHHHHH-cCCHHHHHHHHHHHHHHc---C-Cc---------
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLF--NLARLLEQ-IHDTVAASVLYRLILFKY---Q-DY--------- 230 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~--~la~~~~~-~g~~~~A~~~~~~~l~~~---p-~~--------- 230 (760)
++..+..-......++.+ ..+.. .+-.++.. -..|..|...+.+..... + .+
T Consensus 257 -----------yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 257 -----------YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred -----------HHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 111111111111111111 11111 11111111 125667776666554321 1 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 310 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~ 310 (760)
..++...|..++-.|++-.|...|..++.++|.++..|..++.+|...++..+....|..+..++|. ++.+|+..|.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm- 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQM- 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHH-
Confidence 4567777888888899999999999999999988888899999999999999999999999998888 88888889998
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 390 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 390 (760)
++.. ++++.|+.-|++++.++|.++.++..++.++++.+.+.++...|+.+....| ..++++.
T Consensus 404 ~flL------------~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-----~~~Evy~ 466 (606)
T KOG0547|consen 404 RFLL------------QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-----NCPEVYN 466 (606)
T ss_pred HHHH------------HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHH
Confidence 8888 8999999999999999999999999999999999999999999999999888 8889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCC------cHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNT------DAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
..|.++..+++|+.|++.|..|+.+- |. ++..+.+-|.+..+ .+++..|+.++.+|++++|....++..||
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE--~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tla 544 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELE--PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLA 544 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhc--cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 99999999999999999999999873 33 33334443333322 48888899999999999998888888888
Q ss_pred HHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHH
Q 004339 464 VAMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 498 (760)
Q Consensus 464 ~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~ 498 (760)
.+.-+.+ .+..|+..|+.+..+-
T Consensus 545 q~~lQ~~------------~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 545 QFELQRG------------KIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHh------------hHHHHHHHHHHHHHHH
Confidence 8765555 4555555555555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=274.29 Aligned_cols=394 Identities=13% Similarity=0.028 Sum_probs=321.7
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.+..+|..+.++..+|.++...|++.+|+.+|++++..+|.++.++..+|.++...|++.+|+..+++++..+|+++. +
T Consensus 41 ~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~ 119 (765)
T PRK10049 41 YRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-L 119 (765)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-H
Confidence 334577888889999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
..+|.++. .|++..|+..|++++.+.|.+ +.++..+|.++...+..+.|+..+.++.. .|...
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~-----~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~---------- 183 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQT-----QQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEK---------- 183 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH----------
Confidence 99999988 889999999999999999997 89999999999999999999999987765 22100
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHcCCcHH-------HH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT---VAASVLYRLILFKYQDYVD-------AY 234 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~-------~~ 234 (760)
..+...|....+...++..+...+++ +.|+..|+.++...|.++. ++
T Consensus 184 -----------------------~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 184 -----------------------RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred -----------------------HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 00000011111111111111222334 7899999999976433322 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC---ChHHHHHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYP-NALSMLGDLELKNDDWVKAKETFRAASDATDGK---DSYATLSLGNWN 310 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~lg~~~ 310 (760)
+....++...|++++|+..|++++...|..| .+...+|.+|+..|++++|+.+|.+++...|.. .......++.+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a- 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS- 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH-
Confidence 2212344677999999999999998865433 244557999999999999999999998876652 13445556666
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---------------NLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
+... |++++|+.++..+....|. ...++..+|.++...|++++|+.+|.+++.
T Consensus 320 ~~~~------------g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 320 LLES------------ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHhc------------ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666 9999999999999988773 235778899999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..| .++.+++.+|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++++|...+++++...|++
T Consensus 388 ~~P-----~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 388 NAP-----GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred hCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999 78999999999999999999999999999997 68889999999999999999999999999999999999
Q ss_pred hhHH
Q 004339 456 YTLR 459 (760)
Q Consensus 456 ~~~~ 459 (760)
+.+.
T Consensus 461 ~~~~ 464 (765)
T PRK10049 461 PGVQ 464 (765)
T ss_pred HHHH
Confidence 8543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-26 Score=261.53 Aligned_cols=409 Identities=13% Similarity=0.034 Sum_probs=301.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcc
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 94 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (760)
..+|..|..+...|++++|+..|++++..+|+++.+++.++.+|...|++++|+.++++++..+|.+...+..++.+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i--- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---
Confidence 45677888888889999999999999999999999999999999999999999999999999999999988888777
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI--------HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
+++.+|+..|++++...|.+ ..++..++.. |...+....++. .+.+...|....+...
T Consensus 122 ~~~~kA~~~ye~l~~~~P~n-----~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~------- 187 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKAC-----DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTD------- 187 (987)
T ss_pred ccChhHHHHHHHHHHhCCCC-----hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHH-------
Confidence 89999999999999999997 7888888887 666655555665 3333322111111110
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ-IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 245 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 245 (760)
...+......+-.++..+.+..+..|.....+..++.+|.. +++ +.+..++...++ .++.++..++..|...|
T Consensus 188 --~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 188 --LLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRG 261 (987)
T ss_pred --HHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCC
Confidence 00011111111223333444445677788888888888888 477 778777665333 67888889999999999
Q ss_pred CHHHHHHHHHHHHHHc----------------------------------------------------------------
Q 004339 246 NLQLSIELVNEALKVN---------------------------------------------------------------- 261 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~---------------------------------------------------------------- 261 (760)
+.++|...+...-...
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 8888875553321111
Q ss_pred -------------------------------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh-----------------
Q 004339 262 -------------------------------GKYPNALSMLGDLELKNDDWVKAKETFRAASD----------------- 293 (760)
Q Consensus 262 -------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------- 293 (760)
|.++..+..++...+..|++.+|...|..++.
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 11111222222233333444444444444433
Q ss_pred --------------------------------------------------------------------------------
Q 004339 294 -------------------------------------------------------------------------------- 293 (760)
Q Consensus 294 -------------------------------------------------------------------------------- 293 (760)
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~ 501 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQ 501 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence
Q ss_pred ---cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004339 294 ---ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 370 (760)
Q Consensus 294 ---~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (760)
..|. ....+.+|.+ +... |+++.|+..|++++...|. ...+..+|.++...|++.+|+.+|
T Consensus 502 Al~~~Pd--~~~~L~lA~a-l~~~------------Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 502 AEQRQPD--AWQHRAVAYQ-AYQV------------EDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred HHHhCCc--hHHHHHHHHH-HHHC------------CCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2221 1112222222 2233 9999999999998877555 456789999999999999999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 371 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 371 ~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.+++...| .....+..++..+...|++++|+..|++++.. .|. +.++..+|.++.+.|++++|+.+|.+++.
T Consensus 566 ~qAL~l~P-----~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 566 QQAEQRGL-----GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APS-ANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHhcCC-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988 66777777777778889999999999999997 444 88999999999999999999999999999
Q ss_pred hCCCChhHHhhHHHHHHHHH
Q 004339 451 LAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 451 ~~p~~~~~~~~la~~~~~~~ 470 (760)
++|+++.+++++|.++...+
T Consensus 638 l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 638 LEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999988776
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=224.74 Aligned_cols=432 Identities=14% Similarity=0.111 Sum_probs=305.8
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCCc-----
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA------AKIDPRD----- 81 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~----- 81 (760)
++.-.+.+|++++..|+|..|......- .+...+..+.+..+.|+....+++.|+.++... +..+|.+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l 126 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTL 126 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhcee
Confidence 3444678888888888888887777654 445566777788888888888888887777632 1111111
Q ss_pred --------------HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------------
Q 004339 82 --------------AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE-------------- 132 (760)
Q Consensus 82 --------------~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-------------- 132 (760)
....+..|.+|. ..+...|...|..|+..++.. .+++..+...+..
T Consensus 127 ~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c-----~Ea~~~lvs~~mlt~~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 127 ELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKC-----FEAFEKLVSAHMLTAQEEFELLESLDL 201 (611)
T ss_pred ccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhh-----HHHHHHHHHHHhcchhHHHHHHhcccH
Confidence 112233444555 236777777777777665544 2222222111110
Q ss_pred ---cCCHHHHHHHHHHHhc----------ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 133 ---KGEFESAHQSFKDALG----------DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 133 ---~g~~~~A~~~~~~al~----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
.+...+-+..+-.+.. ..+........ ....+-.......+....+-.-+......+..+|-++..
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~-~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~ 280 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA-ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC 280 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh-hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch
Confidence 0111111111111110 00100000000 000000011111111111222222222333355555554
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 200 L-FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 200 ~-~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+ +.+| ++...|+..+-..+-.+++..+|+.+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+...
T Consensus 281 ~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 281 LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 4 4455 8889999888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
|..++|+.+|..|.++.|+ .....+.+|.- |... +++..|..+|..++.+.|.++.+++.+|.+.+
T Consensus 360 ~EhdQAmaaY~tAarl~~G-~hlP~LYlgme-y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPG-CHLPSLYLGME-YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred chHHHHHHHHHHHHHhccC-CcchHHHHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 9999999999999999887 55555667776 8888 99999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSV--FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
..+.|.+|..+|+.++...+... .+.....+.+||+++.+++.+.+|+..|++++.+ .|.++.++..+|.+|..+|
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLG 503 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhc
Confidence 99999999999999996554211 1124567999999999999999999999999997 7888999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 437 QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
+++.|+.+|.++|-+.|++..+.--|+.+++.
T Consensus 504 nld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 504 NLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred ChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999998887777776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-23 Score=236.31 Aligned_cols=453 Identities=12% Similarity=0.025 Sum_probs=340.8
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.....|..+...+..+.+.++.|++..|+..|.++++.+|.++.+...++.++...|++.+|+.++++++.-.|.....+
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 34567889999999999999999999999999999999999975555899999999999999999999994444455555
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
..+|.++. .|+++.|+..|++++...|.+ +.++..++.+|...+++++|+..+.+++...|.....
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n-----~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-------- 172 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTN-----PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-------- 172 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--------
Confidence 55577888 689999999999999999997 7888899999999999999999999998865531111
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH--HHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA--IAK 242 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~--~~~ 242 (760)
.....+.........++..+.+.+...|.+..++..+..++...|-...|..+....-.........++.... -..
T Consensus 173 --l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 173 --MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred --HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 0001111111222234444555555666666666666666666666666665444322111111111111111 111
Q ss_pred Hc---------C---CHHHHHHHHHHHHHHcCCChH-------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 243 AR---------N---NLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 243 ~~---------g---~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+. . -.+.|+..++.++...+..|. +..-.-.++...|++.+++..|+.+.........++.
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 11 1 234466666666664444332 3334455667889999999999988876655578899
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 377 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 377 (760)
...|.. |+.. +.+.+|+.+|..++...| ........|...|...++|++|..++.++....
T Consensus 331 ~a~ada-yl~~------------~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 331 RWAASA-YIDR------------RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred HHHHHH-HHhc------------CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 999999 9998 999999999999988653 234445788889999999999999999999866
Q ss_pred cC----------CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004339 378 SG----------SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 378 p~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 447 (760)
|- ...|+...+...++.++...|++.+|...++..+.. .|.++.++..+|.++...|.+..|...++.
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 61 234456778889999999999999999999999885 889999999999999999999999999999
Q ss_pred HHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 448 AIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 448 al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
++.++|.+..+.+.++.++..++ ++.+|..+...+....|.
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~-------------------e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQ-------------------EWHQMELLTDDVISRSPE 516 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHhhCCC
Confidence 99999999999999988865554 677777777777776665
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-24 Score=212.08 Aligned_cols=334 Identities=15% Similarity=0.104 Sum_probs=287.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
++-.++..|.++...|....|+..|..++...|-+..+|..|+.+... +......+...|.+ .+...-..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~------~e~~~~l~~~l~~~---~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD------IEILSILVVGLPSD---MHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch------HHHHHHHHhcCccc---chHHHHHHH
Confidence 456788899999999999999999999999999999999999887541 12222222222211 123444566
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
+.++....+.++++.-+...+.. ..|...-+....|.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~------------------------------------------gf~~~~~i~~~~A~~ 271 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSV------------------------------------------GFPNSMYIKTQIAAA 271 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------------------------------------------cCCccHHHHHHHHHH
Confidence 77777788888888888887763 245666777888999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
.....++++|+..|+.+.+.+|-..+-.-.+..+++-.++-.+-.-+...+..++.--++....+|+.|...++.++|+.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 99999999999999999999998777777777777777766665566677888888889999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHH
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 366 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 366 (760)
+|+++++++|. ...+|..+|.- |... ++...|+..|++|+.++|.+..+|++||..|..++...=|
T Consensus 352 YFkRALkLNp~-~~~aWTLmGHE-yvEm------------KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 352 YFKRALKLNPK-YLSAWTLMGHE-YVEM------------KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHHhcCcc-hhHHHHHhhHH-HHHh------------cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 99999999998 89999999999 9999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Q 004339 367 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446 (760)
Q Consensus 367 ~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 446 (760)
+-+|++++...| .++.+|..||.||.++++.++|+++|.+++.. ...+..++..||.+|.++++..+|..+|+
T Consensus 418 LyYfqkA~~~kP-----nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 418 LYYFQKALELKP-----NDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred HHHHHHHHhcCC-----CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999 89999999999999999999999999999996 45567999999999999999999999999
Q ss_pred HHHHhC
Q 004339 447 RAIHLA 452 (760)
Q Consensus 447 ~al~~~ 452 (760)
+.++..
T Consensus 491 k~v~~~ 496 (559)
T KOG1155|consen 491 KYVEVS 496 (559)
T ss_pred HHHHHH
Confidence 999843
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-24 Score=211.80 Aligned_cols=367 Identities=15% Similarity=0.141 Sum_probs=306.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP--RDAQAFIDLGE 90 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 90 (760)
++..+|..|.++...|....|+..|..++...|-+-.+|..|+.+... +......+..-| .+...-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 466789999999999999999999999999999999999999887543 233334443334 34444455666
Q ss_pred HHc-cCCHhHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTL-LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
++. ..+.++++.-+...+.. .|.+ ..+-...|.+.+.+.++++|+..|+.+.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~-----~~i~~~~A~~~y~~rDfD~a~s~Feei~kn------------------- 291 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNS-----MYIKTQIAAASYNQRDFDQAESVFEEIRKN------------------- 291 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-------------------
Confidence 666 45788888888888877 6665 677788899999999999999999999884
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 248 (760)
+|-...-.-.+.++++-.++-.+-.-+-..+..++.-.+.....+|+.|.-.++.+
T Consensus 292 ------------------------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 292 ------------------------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred ------------------------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 44444444555566666555444444556666777777888888999999999999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 249 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|+.+|+++++++|....+|..+|.-|+.+.+...|+..|++++.+.|. +..+|+.||.. |-.. +.
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQa-Yeim------------~M 413 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQA-YEIM------------KM 413 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHH-HHHh------------cc
Confidence 9999999999999999999999999999999999999999999999998 89999999999 9988 99
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+.=|+-+|++++...|++...|..||.||.+.++.++|+.+|.+++.... ....+++.||.+|..++++.+|..+
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-----te~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-----TEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876 5678999999999999999999999
Q ss_pred HHHHHhhh-----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 409 YQNCLRKF-----YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 409 ~~~al~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
|.+.+... ..+.-..+...|+..+.+.+++++|-.+...++.-.+
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 99999853 2233367778899999999999999998888877644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=213.12 Aligned_cols=461 Identities=15% Similarity=0.152 Sum_probs=357.5
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHH
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-----AQAFID 87 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 87 (760)
.+++.+++.|....-+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+.+|+.++..-|.. ...+.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 4688999999999999999999998875 468877888899999999999999999999999887752 345667
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhh---hcccc--h
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL---LDSKT--K 161 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~--~ 161 (760)
+|..+. .|+|+.|+..|..++...|+ ..+-++|..|++..|+-++-...|.+++.+...+.. +.... .
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPN------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCcc------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 777777 78999999999999999998 467788999999999999999999999987421110 00000 0
Q ss_pred hhhhhhhhHHHHHHhHH----------hhhhhhccCCCcc------------------CCcchHHHHHHHHHHHHHcCCH
Q 004339 162 TYVIDASASMLQFKDMQ----------LFHRFENDGNHVE------------------LPWNKVTVLFNLARLLEQIHDT 213 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~------------------~~p~~~~~~~~la~~~~~~g~~ 213 (760)
..++......-..+.+. +..+...+...+. .-|.-...-.+.+..|.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 00111000000000000 0001111111100 1111222335567778899999
Q ss_pred HHHHHHHHHHHHHcCCc-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHH
Q 004339 214 VAASVLYRLILFKYQDY-VDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 290 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 290 (760)
+.|++++.-.-+.+... ..+-.+|..+++. -.++..|..+...++.++.-++.++.+.|++.+..|++++|...|+.
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999988766555432 2344566666655 34788999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004339 291 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 370 (760)
Q Consensus 291 al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (760)
++....+ ...+++++|.. +-.. |++++|+.+|-++..+--++..+++.++.+|..+.+..+|+++|
T Consensus 516 al~ndas-c~ealfniglt-~e~~------------~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 516 ALNNDAS-CTEALFNIGLT-AEAL------------GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred HHcCchH-HHHHHHHhccc-HHHh------------cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 9987655 78899999998 8888 99999999999998888889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 371 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 371 ~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.++..+.| ++|.++..||.+|-+.|+-.+|.+++-..... .|.+.++.-+||..|....-+++|+.+|++|.-
T Consensus 582 ~q~~slip-----~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 582 MQANSLIP-----NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHhcccCC-----CCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999998 89999999999999999999999998888775 577799999999999999999999999999999
Q ss_pred hCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004339 451 LAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKH 526 (760)
Q Consensus 451 ~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (760)
+.|+.......++-|+...| +|..|..+|..+.+.- +.++.-+.-.++.|.+
T Consensus 655 iqp~~~kwqlmiasc~rrsg-------------------nyqka~d~yk~~hrkf-----pedldclkflvri~~d 706 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSG-------------------NYQKAFDLYKDIHRKF-----PEDLDCLKFLVRIAGD 706 (840)
T ss_pred cCccHHHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHhC-----ccchHHHHHHHHHhcc
Confidence 99999988888899887766 5667777777666543 3344444444455533
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-24 Score=215.16 Aligned_cols=415 Identities=17% Similarity=0.152 Sum_probs=320.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+-..|...+..|+|+.|+.+|..+|.++|.|...|.+...+|..+|+|.+|+.--.+.++++|..+..|..+|..+. .|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999888 99
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---------------------CH---HHHHHHHHHHhcccc
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG---------------------EF---ESAHQSFKDALGDGI 151 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g---------------------~~---~~A~~~~~~al~~~p 151 (760)
+|++|+..|...+..+|++ ..++..++.++.... ++ +.+.......+..+|
T Consensus 85 ~~~eA~~ay~~GL~~d~~n-----~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSN-----KQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred cHHHHHHHHHHHhhcCCch-----HHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 9999999999999999997 788888887772210 01 111111122222222
Q ss_pred hhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCc------------c---------hHHHHHHHHHHHHHc
Q 004339 152 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW------------N---------KVTVLFNLARLLEQI 210 (760)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p------------~---------~~~~~~~la~~~~~~ 210 (760)
...-.... ...+......+.......+.............| + .......+|+..+..
T Consensus 160 ~~l~~~l~--d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 160 TSLKLYLN--DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred Hhhhcccc--cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 11111111 111111111111000000000000000000111 0 123456789999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-------HHHHHHHHHHhhcCCHHH
Q 004339 211 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVK 283 (760)
Q Consensus 211 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~ 283 (760)
.++..|++.|..++.++ ..+..+.+.+.+|+..|.+..++.....+++...... .++..+|..|...++++.
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 99999999999999999 8888899999999999999999998888877654322 244456778888899999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
|+.+|.+++..... ..+ .... ...++++.......-++|.-..-...-|..++..|+|
T Consensus 317 ai~~~~kaLte~Rt---------~~~-ls~l------------k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT---------PDL-LSKL------------KEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHhhhhcC---------HHH-HHHH------------HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 99999998875443 222 3333 6778888888888888888777777789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
..|+..|.+++..+| +++..|.|.|.||..+|.+..|+...+.++.+ +|+....|+.-|.++..+.+|++|+.
T Consensus 375 ~~Av~~YteAIkr~P-----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDP-----EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 89999999999999999999999999999997 88889999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 444 SLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 444 ~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
.|.++++++|++..+.-.+..|+..
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999888888888654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-25 Score=214.42 Aligned_cols=440 Identities=14% Similarity=0.068 Sum_probs=331.1
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
..|+....-+.+|.+|++..+|.+|+.+|+.++..-|.- ..++.++|..+.+.|+|+.|+..|..++...|+...
T Consensus 232 mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a 311 (840)
T KOG2003|consen 232 MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA 311 (840)
T ss_pred ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence 456666677899999999999999999999999988862 568889999999999999999999999999997665
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHhcc-
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAG-------EEVPIEVLNNIGVIH-----FEKGEFESAHQSFKDALGD- 149 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~~- 149 (760)
++. |..|++ .|+-++..+.|.+.+.+-.... ...+...+.+-+.-- +...+-..|..+...+.++
T Consensus 312 ~~n-l~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii 390 (840)
T KOG2003|consen 312 ALN-LIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII 390 (840)
T ss_pred hhh-hhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 554 455555 8899999999999887521110 011122222222111 1112222333333322221
Q ss_pred -----------cchhhh-hcccchh---hhhhhhhHHHHHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHc--C
Q 004339 150 -----------GIWLTL-LDSKTKT---YVIDASASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQI--H 211 (760)
Q Consensus 150 -----------~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~--g 211 (760)
+.|... +...... ..+.........+...+..++..+.-... .+.....+..+|..+++.+ .
T Consensus 391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 112111 1111000 00111111111122222222221111101 1112234556666666664 4
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 004339 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 212 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (760)
++..|..+-..++.++..++.+..+.|.+.+..|++++|...|..++..+.....+++++|..+..+|+.++|+.+|-++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004339 292 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 371 (760)
Q Consensus 292 l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 371 (760)
-.+.-. +..+++.++++ |-.. .+...|+++|.++..+-|+++.++..||.+|-+.|+-.+|.+++-
T Consensus 551 h~il~n-n~evl~qiani-ye~l------------ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 551 HAILLN-NAEVLVQIANI-YELL------------EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred HHHHHh-hHHHHHHHHHH-HHHh------------hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 776555 88999999999 9988 999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 372 QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 372 ~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
......| .+..+.-.||..|+...-+++|+.+|+++.-. .|+.......++.|+.+.|+|.+|...|+..-..
T Consensus 617 dsyryfp-----~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 617 DSYRYFP-----CNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hcccccC-----cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8888887 88899999999999999999999999998775 6777888889999999999999999999999999
Q ss_pred CCCChhHHhhHHHHHHHHH
Q 004339 452 APSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 452 ~p~~~~~~~~la~~~~~~~ 470 (760)
.|.+...+--|..+...+|
T Consensus 690 fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred CccchHHHHHHHHHhcccc
Confidence 9999887776666655555
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=212.20 Aligned_cols=404 Identities=13% Similarity=0.098 Sum_probs=299.0
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCcH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDA 82 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~ 82 (760)
..+|...|+-+.-|-+++-||...|+|.+.++.+.++++++|+...+++..+.++..+|++.+|+....-.--. .-.+.
T Consensus 139 ~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~ 218 (606)
T KOG0547|consen 139 TQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA 218 (606)
T ss_pred HHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc
Confidence 35788999988888999999999999999999999999999999999999999999999999998765432211 11111
Q ss_pred HH-------HHHHHHHHc----cC-C-----HhHHHHHHHHHHHHHHhcCCCC--C-HHHHHHHHHHHHHc---CCHHHH
Q 004339 83 QA-------FIDLGELLI----SS-D-----TGAALDAFKTARTLLKKAGEEV--P-IEVLNNIGVIHFEK---GEFESA 139 (760)
Q Consensus 83 ~~-------~~~la~~~~----~~-~-----~~~A~~~~~~al~~~~~~~~~~--~-~~~~~~la~~~~~~---g~~~~A 139 (760)
.. +...|..-. .+ + -..-+..|-..+.-.|...... + ......-+.-+... ..|..|
T Consensus 219 s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a 298 (606)
T KOG0547|consen 219 SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKA 298 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHH
Confidence 11 111111100 00 0 0111222222222111110000 0 01100001111111 134444
Q ss_pred HHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHcCCHHHHHH
Q 004339 140 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASV 218 (760)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~ 218 (760)
...+.+..... ...+. ...+. .-...+.++...|..++-.|++-.|..
T Consensus 299 ~~~~te~~~~~-----------------------------~~~~~--~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 299 YDKATEECLGS-----------------------------ESSLS--VNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred HHHHHHHhhhh-----------------------------hhhcc--ccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 44444433210 00000 00000 001235678888999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC
Q 004339 219 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 298 (760)
Q Consensus 219 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (760)
.|..+|.++|.....|+.+|.+|...++..+....|.++..++|.++.+|+..|.+++-++++++|+.-|++++.+.|.
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 299 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
+.+++..++.+ .++. +.+..+...|+.++...|+.+.+++..|.++..+++|+.|++.|.+++.+.|
T Consensus 427 ~~~~~iQl~~a-~Yr~------------~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 427 NAYAYIQLCCA-LYRQ------------HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hhHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 89999999999 8888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 379 GSV-FVQMPDVWINLAHVYF-AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 379 ~~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
... ..-++..+..-|.+.. -.+++..|+.++.+|+.. +|..-.++..||.+..++|+.++|+++|++++.+...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 310 0013333444443332 237999999999999996 7888999999999999999999999999999887643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=214.13 Aligned_cols=448 Identities=15% Similarity=0.109 Sum_probs=355.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
-+..+..-++.+.+|..|+-+-+++..+. .+|.-.+.+|.+++..|+|..|......- .+...+..+.+..+.|+. .
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHH
Confidence 34555567788889999999999998877 78888899999999999999998877665 556667888888888888 6
Q ss_pred CCHhHHHHHHHHH------HHHHHhc---------C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh
Q 004339 95 SDTGAALDAFKTA------RTLLKKA---------G-----EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 154 (760)
Q Consensus 95 ~~~~~A~~~~~~a------l~~~~~~---------~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 154 (760)
.+++.|+..+.++ +...|.. . ......+++..|.+|..+.++.+|...|..++-..+...
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 6888888887732 1112221 0 111345677889999999999999999999998764211
Q ss_pred hh-cccchhhhhhh----------hhHHHHHHhHH----hhhhhh-c--cC--------CCccCCcchHHHHHHHHHHHH
Q 004339 155 LL-DSKTKTYVIDA----------SASMLQFKDMQ----LFHRFE-N--DG--------NHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 155 ~~-~~~~~~~~~~~----------~~~~~~~~~~~----~~~~l~-~--~~--------~~~~~~p~~~~~~~~la~~~~ 208 (760)
.. .......++.. ..+.+...... ++.... . -. ..+..-..++.++...+..++
T Consensus 176 Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y 255 (611)
T KOG1173|consen 176 EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLY 255 (611)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHH
Confidence 10 00000000000 00000000011 111000 0 00 111122345678888999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (760)
..++|.+..+++..++..+|.+..++.....++..+|+..+-..+-.+++..+|+.+..|+.+|..|...|.+.+|.++|
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999998887766669999999998888888999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004339 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 289 ~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 368 (760)
.++..+.|. ...+|+.+|.. |... +..++|+.+|..|-++.|........+|.-|...+++..|..
T Consensus 336 SKat~lD~~-fgpaWl~fghs-fa~e------------~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 336 SKATTLDPT-FGPAWLAFGHS-FAGE------------GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhhcCcc-ccHHHHHHhHH-hhhc------------chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999988 89999999999 8888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-----cHHHHHHHHHHHHHhccHHHHHH
Q 004339 369 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-----DAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 369 ~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
+|.+|+.+.| .+|.++..+|.+.+..+.|.+|..+|+.++....... ...++.+||.+|.+++.+.+|+.
T Consensus 402 Ff~~A~ai~P-----~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 402 FFKQALAIAP-----SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHhcCC-----CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999999 8999999999999999999999999999995432211 25568899999999999999999
Q ss_pred HHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 004339 444 SLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 496 (760)
Q Consensus 444 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~ 496 (760)
+|+++|.+.|.+..++..+|.||..+| .+..|+..|.+|+-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llg------------nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLG------------NLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhc------------ChHHHHHHHHHHHh
Confidence 999999999999999999999998887 56666666666553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=227.69 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchH
Q 004339 120 IEVLNNIGVIHFEK--GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 197 (760)
Q Consensus 120 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ 197 (760)
..++..+|..|... -+..+|+..|.+.-. ..++..
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~-------------------------------------------h~~nt~ 353 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPS-------------------------------------------HHYNTG 353 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------------------------------------------hcCCch
Confidence 45566666665554 456788888888332 344566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
.++..+|+.|+.+++|++|..+|+.+-...|-.+...-.+..+++.+.+.-+--.+.+.++..+|+.|+.|..+|++|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 89999999999999999999999999999998888777788888888776666666778889999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 278 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
+++++.|+++|++++++.|. ..++|..+|.- +... ..++.|..+|+.++..+|.+..+|+++|.+|
T Consensus 434 Qkdh~~Aik~f~RAiQldp~-faYayTLlGhE-~~~~------------ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHE-SIAT------------EEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred hhHHHHHHHHHHHhhccCCc-cchhhhhcCCh-hhhh------------HHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 99999999999999999998 89999999998 8888 9999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
.++++++.|.-.|++|+.++| .+..+...+|.++.++|+.++|+.+|++|+.+ +|.++-..+..|.+++.+++
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP-----~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINP-----SNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred eccchhhHHHHHHHhhhcCCc-----cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcc
Confidence 999999999999999999999 88999999999999999999999999999996 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
+.+|+..+++...+.|++..+++-+|.+|..++ ....|+..|.......|+
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~k~~~-------------------~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIYKRLG-------------------NTDLALLHFSWALDLDPK 623 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-------------------cchHHHHhhHHHhcCCCc
Confidence 999999999999999999999999999998877 345566666666655554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=225.94 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=256.7
Q ss_pred HHHHHHHHHHc-c--CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhccc
Q 004339 83 QAFIDLGELLI-S--SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 159 (760)
Q Consensus 83 ~~~~~la~~~~-~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 159 (760)
..+..+|..|. . -+..+|+..|.+.-...++. ..++..+|..|+.+++|++|..+|+.+-...|
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt-----~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p-------- 384 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT-----GWVLSQLGRAYFELIEYDQAERIFSLVRRIEP-------- 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence 44556666665 2 26788999998844444443 68889999999999999999999999987544
Q ss_pred chhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 004339 160 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239 (760)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 239 (760)
-.....-.+..++..+.+--.---+.+.++..+|..+..|..+|.
T Consensus 385 -----------------------------------~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GN 429 (638)
T KOG1126|consen 385 -----------------------------------YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGN 429 (638)
T ss_pred -----------------------------------ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcc
Confidence 233333333444444444333334456667788999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 319 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~ 319 (760)
||..+++++.|+.+|+++++++|....+|..+|.=+....+++.|..+|+.++...|. .-.+|+.+|.+ |.++
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v-y~Kq----- 502 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV-YLKQ----- 502 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh-eecc-----
Confidence 9999999999999999999999999999999999999999999999999999998887 78899999999 9988
Q ss_pred cCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc
Q 004339 320 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 399 (760)
Q Consensus 320 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~ 399 (760)
++++.|.-+|++|+.++|.+......+|.++...|+.++|+.+|++|+.++| .++...+..|.+++.+
T Consensus 503 -------ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-----kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 503 -------EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-----KNPLCKYHRASILFSL 570 (638)
T ss_pred -------chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998 8888899999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 400 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 400 g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++|.+|+..++..-.. .|.+..+++.+|.+|..+|+.+.|+..|.-|..++|.-..+.
T Consensus 571 ~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred cchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhh
Confidence 9999999999998886 678899999999999999999999999999999999765533
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=222.69 Aligned_cols=271 Identities=19% Similarity=0.174 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004339 50 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128 (760)
Q Consensus 50 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 128 (760)
..+.+|..+...|++++|+..|.+++..+|+++.++..+|.++. .|++..|+..++.++...+.. ......++..+|.
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT-REQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555444 445555555555444321100 0001345677777
Q ss_pred HHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 129 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~ 208 (760)
+|...|+++.|+.+|.+++. ..|....++..++.++.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~-------------------------------------------~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVD-------------------------------------------EGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHc-------------------------------------------CCcchHHHHHHHHHHHH
Confidence 77778888888888777765 34455667777777777
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 283 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 283 (760)
..|++++|+..|..++...|... ..+..+|.++...|++++|+.+|.+++...|.+..+++.+|.++...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 77888888777777777666432 2345666667777777777777777777777766666677777777777777
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
|+..|.+++...|.....++..++.+ |... |+++.|+.++++++...|+...+ ..+|.++...|++
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~ 298 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCH
Confidence 77766666665444223334444444 4444 55555555555555555543322 4455555555555
Q ss_pred HHHHHHHHHHHHHhc
Q 004339 364 DVSKDLFTQVQEAAS 378 (760)
Q Consensus 364 ~~A~~~~~~al~~~p 378 (760)
++|+.+|.+++...|
T Consensus 299 ~~A~~~l~~~l~~~P 313 (389)
T PRK11788 299 EAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHHhCc
Confidence 555555555555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=215.26 Aligned_cols=450 Identities=16% Similarity=0.153 Sum_probs=284.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
+..++..|..++..|++++|..++..+|+.+|.++.+|+.||.+|.++|+..+|+..+-.|..++|.+...|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccch--------------------
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-------------------- 152 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------------- 152 (760)
+|++..|+-+|.+|++..|.+ ....+..+.+|.+.|++..|+..|.+++..+|.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n-----~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSN-----WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777665 566666666666666666666666666665440
Q ss_pred ----------------------hhhhcccchhhhh----hhhhHHH----------------------------------
Q 004339 153 ----------------------LTLLDSKTKTYVI----DASASML---------------------------------- 172 (760)
Q Consensus 153 ----------------------~~~~~~~~~~~~~----~~~~~~~---------------------------------- 172 (760)
.+.+......++. +.+.-.+
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 0000000000000 0000000
Q ss_pred ---------------HHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHH
Q 004339 173 ---------------QFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYL 235 (760)
Q Consensus 173 ---------------~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~ 235 (760)
..........+..+...-. .....+..++.++.+|...|++..|+.+|..++...+ .+..+|+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 0000000111110000000 1334567899999999999999999999999997655 4567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC--------Ch-------
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK--------DS------- 300 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~------- 300 (760)
.+|.||..+|.++.|+.+|.+++...|++.++...|+.++..+|++++|.+.+..+....+.. ..
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876332110 00
Q ss_pred HHHHHHHHH------------HHHHHHhh-h---h------cC--------------------------------c----
Q 004339 301 YATLSLGNW------------NYFAALRN-E---K------RA--------------------------------P---- 322 (760)
Q Consensus 301 ~~~~~lg~~------------~y~~~~~~-~---~------~~--------------------------------~---- 322 (760)
..+...|.. .+...... . + .. .
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 000000000 00000000 0 0 00 0
Q ss_pred ----------------------hHHhhcHHHHHHHH----------------------------------------HHHH
Q 004339 323 ----------------------KLEATHLEKAKELY----------------------------------------TRVI 340 (760)
Q Consensus 323 ----------------------~~~~~~~~~A~~~~----------------------------------------~~al 340 (760)
....+.+.+|+.+. +-++
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00012223333333 2222
Q ss_pred hh-----CCCCHHHHH-----------------------------------HHHHHHHHcCChHHHHHHHHHHHHHhcCC
Q 004339 341 VQ-----HTSNLYAAN-----------------------------------GAGVVLAEKGQFDVSKDLFTQVQEAASGS 380 (760)
Q Consensus 341 ~~-----~p~~~~~~~-----------------------------------~la~~~~~~g~~~~A~~~~~~al~~~p~~ 380 (760)
.. +|.....|+ ..|..+...+.|.-|+..|.++...+|
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p-- 771 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP-- 771 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC--
Confidence 22 222222222 134444456688999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHc--C--------CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 381 VFVQMPDVWINLAHVYFAQ--G--------NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 381 ~~~~~~~~~~~la~~~~~~--g--------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
++|-+.+.+|..+..+ + ..-+++.++.+..++......-+++|++|++|...|=..-|+.+|+++|.
T Consensus 772 ---d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 772 ---DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 7777777666665543 2 24566777776666532223488999999999999999999999999999
Q ss_pred hCCCC------------hhHHhhHHHHHHHHHHhH
Q 004339 451 LAPSN------------YTLRFDAGVAMQKFSAST 473 (760)
Q Consensus 451 ~~p~~------------~~~~~~la~~~~~~~~~~ 473 (760)
+.|.. ..+-|||.++|+..|..+
T Consensus 849 ~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~ 883 (895)
T KOG2076|consen 849 VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQ 883 (895)
T ss_pred CCccccccccCCcccHHHHHHhhhhhhhccCCcHH
Confidence 97644 357788899988877433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-22 Score=214.24 Aligned_cols=327 Identities=19% Similarity=0.220 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
...++..|..++..|++++|..++..+++.+|.++.+|+.||.+|. +|+..+++..+-.|-.++|++ ...|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d-----~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD-----YELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC-----hHHHHHH
Confidence 4567778888888899999999999999999999999999999999 889999999999999999997 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
+.....+|++..|+-+|.++++ ..|.+....+..+.+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~-------------------------------------------~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQ-------------------------------------------ANPSNWELIYERSSL 250 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHh-------------------------------------------cCCcchHHHHHHHHH
Confidence 9999999999999999999998 566777888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCChHHHHHHHHHHhhcC
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLELKND 279 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 279 (760)
|.+.|++..|...|.+++...|.. .......+..+...+.-+.|+..+..++... ......+..++.+++...
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~ 330 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK 330 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence 888888888888888888888721 1122334566666666677777777777632 223334556666666666
Q ss_pred CHHHHHHHHHHhhh---------------------------------------------------------------cCC
Q 004339 280 DWVKAKETFRAASD---------------------------------------------------------------ATD 296 (760)
Q Consensus 280 ~~~~A~~~~~~al~---------------------------------------------------------------~~~ 296 (760)
.++.|......... ..+
T Consensus 331 q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~ 410 (895)
T KOG2076|consen 331 QSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV 410 (895)
T ss_pred HHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh
Confidence 67666665544333 111
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 297 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 297 ~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
...+..++.++.+ |... |++..|+.+|..++...+. +..+|+.+|.||..+|.++.|+.+|.+++.
T Consensus 411 ~d~~dL~~d~a~a-l~~~------------~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 411 SDDVDLYLDLADA-LTNI------------GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hhhHHHHHHHHHH-HHhc------------ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 1122222233333 3333 5555555555555544332 344555555665555556666666666555
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------hcCCCcHHHHHHHHHHHHHhccHHH
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK-------FYYNTDAQILLYLARTHYEAEQWQD 440 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~la~~~~~~g~~~~ 440 (760)
..| .+.++...|+.++..+|+.++|.+.+.....- +..+++..+...+..+|...|+.++
T Consensus 478 ~~p-----~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 478 LAP-----DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred cCC-----CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 555 55555555555555566555555555553310 0111224445555555555555555
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-20 Score=193.17 Aligned_cols=503 Identities=13% Similarity=0.107 Sum_probs=310.0
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
..+|..+.-++..++|...+...+.+++..|.+++.+...|..+..+|+..+|..+...++..++.+..+|..+|.++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 3567777777778888888888888888888888888888888888888888888888888888878888888887777
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
..+|.+|+.+|+.|+.+.|++ ..+|..++.+..++++++.....-.+.++..|..............-.+.....
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN-----~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDN-----LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888887776 777888888888888887777777777764442111111110000000001011
Q ss_pred HHhHHhhhhhhccCCCccCCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWN-----KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 248 (760)
......+.. .....|. ...+......++...|.++.|++.+...-..--+........+.++..+++++
T Consensus 163 ~~il~ef~~------t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 163 LEILEEFEK------TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHH------hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 011111111 1101111 12344445556666677666666665544333344445556677777777777
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH-HHHHHhhhcCCCCChHHHHHHHHHH---H----HHHHhhh--
Q 004339 249 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK-ETFRAASDATDGKDSYATLSLGNWN---Y----FAALRNE-- 318 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~lg~~~---y----~~~~~~~-- 318 (760)
+|..+|...+..+|++...+..+-.++....+..+++ ..|...-...|.......+.+..+. + ...++..
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 7777777777777777776666666654222333343 4444444444433333322222220 0 0000000
Q ss_pred hcCchH-----H-hhcHHHHHHHHHHHH-------hhC------------CCC--HHHHHHHHHHHHHcCChHHHHHHHH
Q 004339 319 KRAPKL-----E-ATHLEKAKELYTRVI-------VQH------------TSN--LYAANGAGVVLAEKGQFDVSKDLFT 371 (760)
Q Consensus 319 ~~~~~~-----~-~~~~~~A~~~~~~al-------~~~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 371 (760)
++.|.. . -.+....- +.++.+ .-. |.. .+.++.++.-+-..|+++.|..++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred cCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000100 0 01111111 222222 111 222 2345567777889999999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 372 QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 372 ~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.++...| +.++.+..-|.++...|.++.|..++..+..+ +..|..+-...|....+.++.++|...+.+.-.-
T Consensus 396 ~AIdHTP-----TliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 396 LAIDHTP-----TLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHhccCc-----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 9999998 88999999999999999999999999999986 5566666667888899999999999988876554
Q ss_pred CCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHH--HHHHHHHHH--HHH
Q 004339 452 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK--KINTHVEYC--KHL 527 (760)
Q Consensus 452 ~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~ 527 (760)
.- +..-..+...|++.+- .-+.+...+..+..|+..+...-++|..++...-. ++.++++ .++..+.+. .+.
T Consensus 469 ~~-~~~~~L~~mqcmWf~~--E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfD-fhtyc~rk~tlrsYv~ll~~~d~ 544 (700)
T KOG1156|consen 469 GF-GAVNNLAEMQCMWFQL--EDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFD-FHTYCMRKGTLRSYVELLEWEDN 544 (700)
T ss_pred cc-chhhhHHHhhhHHHhH--hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh-HHHHHHhcCcHHHHHHHHHHHHh
Confidence 43 3333333334443332 12445555567888999999999999999987765 6777777 445555444 455
Q ss_pred HHHHHHHHHHHHH
Q 004339 528 LDAAKIHREAAER 540 (760)
Q Consensus 528 l~~~~~~~~~~~~ 540 (760)
|......+++++.
T Consensus 545 L~~~p~y~~Aa~~ 557 (700)
T KOG1156|consen 545 LRSSPYYLRAAKG 557 (700)
T ss_pred hccChHHHHHHHH
Confidence 5555555555544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-21 Score=197.37 Aligned_cols=377 Identities=16% Similarity=0.145 Sum_probs=271.0
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
-..|+.-++.+...+.++-|+.+|..+|+.+|.....|...+..--.-|..+.-..+|++++...|.....|+.++..++
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHH
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 172 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 172 (760)
.|+...|...+..++..+|++ .++|+.-..+.+....++.|..+|.++....
T Consensus 596 ~agdv~~ar~il~~af~~~pns-----eeiwlaavKle~en~e~eraR~llakar~~s---------------------- 648 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNS-----EEIWLAAVKLEFENDELERARDLLAKARSIS---------------------- 648 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCc-----HHHHHHHHHHhhccccHHHHHHHHHHHhccC----------------------
Confidence 677777777777777777775 6777777777777777777777777776422
Q ss_pred HHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 173 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
....+|+..+.+...+++.++|+.+++.+++.+|.+...|+.+|+++.+.++.+.|..
T Consensus 649 ----------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 649 ----------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ----------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 2445677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
.|...++..|+.+.+|..|+.+-...|....|..+|.++.-.+|. +...|+....+ -++. |+.+.|
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~-ElR~------------gn~~~a 772 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRM-ELRA------------GNKEQA 772 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHH-HHHc------------CCHHHH
Confidence 777777777777777777777777777777777777777777776 56666555555 4555 777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..+..++|+..|++...|..-..+.-.-++-..+++.+.++ . .++.+++.+|.+++...+++.|...|.++
T Consensus 773 ~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 773 ELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665555555555544444444433 2 56777777888888888888888888888
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
++. .|.+.++|.++-..+...|.-++-.+.|.++..-.|.+...|..+..
T Consensus 844 vk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 844 VKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred Hcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 876 44445555566666777777777777788877778877777765544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-22 Score=212.20 Aligned_cols=302 Identities=16% Similarity=0.084 Sum_probs=248.1
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
...+.+|..+. .|+++.|+..|.+++...|.+ +.++..+|.++...|+++.|+..+..++...+.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------- 101 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET-----VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL--------- 101 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC---------
Confidence 34455566666 789999999999999998876 789999999999999999999999988763110
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
.......++..+|.+|...|+++.|+.+|.+++...|....++..++.++
T Consensus 102 ------------------------------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 151 (389)
T PRK11788 102 ------------------------------TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIY 151 (389)
T ss_pred ------------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 01123457889999999999999999999999998898899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCChH-----HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHh
Q 004339 242 KARNNLQLSIELVNEALKVNGKYPN-----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 316 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~ 316 (760)
...|++++|+..+..++...|.+.. .+..+|.++...|++++|+.+|.+++...|. ...+++.+|.+ |...
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~-~~~~-- 227 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDL-ALAQ-- 227 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHH-HHHC--
Confidence 9999999999999999988876532 5567888999999999999999999988876 67788889998 8888
Q ss_pred hhhcCchHHhhcHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 317 NEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 317 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|.+++..+|.+ ..++..++.+|...|++++|+..+.+++...| +.. .+..+|.+
T Consensus 228 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~~-~~~~la~~ 291 (389)
T PRK11788 228 ----------GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-----GAD-LLLALAQL 291 (389)
T ss_pred ----------CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cch-HHHHHHHH
Confidence 99999999999999988876 45678899999999999999999999999887 443 44889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE--AEQWQDCKKSLLRAIH 450 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 450 (760)
+...|++++|+..|.+++.. .|.+..+...++..+.. .|+..+|+..+++.+.
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999999999999986 45555444444433322 4578888887776664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-21 Score=202.70 Aligned_cols=419 Identities=17% Similarity=0.125 Sum_probs=339.8
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLG 89 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 89 (760)
+++..|-.+...+...|+|..+.++|++++...-...+.|+.++.+|...|.-..|+.+++..+... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566777889999999999999999999998887888999999999999999999999999999998 88888888888
Q ss_pred HHHc--cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcccchhhhh
Q 004339 90 ELLI--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-----------GEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 90 ~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
.++. .+.+.+++.+..+++...........+..+..+|.+|..+ ....++++.++++++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-------- 472 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-------- 472 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh--------
Confidence 7766 4689999999999999664443444678888888888654 234567777777766
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYL 235 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 235 (760)
.+|.++.+.|.++.-|..+++...|..+..+++..+ .+.+.+|.
T Consensus 473 -----------------------------------~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh 517 (799)
T KOG4162|consen 473 -----------------------------------FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH 517 (799)
T ss_pred -----------------------------------cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence 678889999999999999999999999999999994 57889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~ 315 (760)
.++.++...+++..|+.+...++...|.|.........+-...++.++|+..+...+..... ...+-..++.....+.
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~-~~~~q~~~~~g~~~~l- 595 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA-EYGVQQTLDEGKLLRL- 595 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh-hhhHhhhhhhhhhhhh-
Confidence 99999999999999999999999999999888888888888899999999999888876543 1111122222201110
Q ss_pred hhhhcCchHHhhcHHHHHHHHHHHHhh---------------------CCCC-----HHHHHHHHHHHHHcCChHHHHHH
Q 004339 316 RNEKRAPKLEATHLEKAKELYTRVIVQ---------------------HTSN-----LYAANGAGVVLAEKGQFDVSKDL 369 (760)
Q Consensus 316 ~~~~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~-----~~~~~~la~~~~~~g~~~~A~~~ 369 (760)
+........+...|+..+..+... .|.. ...|...+..+...++.++|..+
T Consensus 596 ---k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 596 ---KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred ---hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 000001112333333333333211 1221 23577788888999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH--HHHH
Q 004339 370 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK--SLLR 447 (760)
Q Consensus 370 ~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~ 447 (760)
+..+-.+.| ..+.+|+..|.++...|++.+|...|..++.. +|.++.+...+|.++...|+..-|.. .+..
T Consensus 673 L~Ea~~~~~-----l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 673 LLEASKIDP-----LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHhcch-----hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 999999998 88999999999999999999999999999996 88999999999999999999888888 9999
Q ss_pred HHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHH
Q 004339 448 AIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 497 (760)
Q Consensus 448 al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~ 497 (760)
|++++|.++.+||.+|.++...| ++..|...|..|+.+
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~G------------d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLG------------DSKQAAECFQAALQL 783 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcc------------chHHHHHHHHHHHhh
Confidence 99999999999999999999888 677777777777653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-21 Score=215.98 Aligned_cols=422 Identities=11% Similarity=-0.011 Sum_probs=315.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+.+..+|.++.+.+.++.++...|++.+|+.++++++...|.....+..+|.++...|++++|+.+|++++..+|+++.+
T Consensus 59 qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~ 138 (822)
T PRK14574 59 EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDL 138 (822)
T ss_pred HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 56778899865555889999999999999999999994444556666666889999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..++.++. .+++.+|+..+.+++..+|.. ..+..++.++...+++.+|+..|++++...|............
T Consensus 139 l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~------~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~ 212 (822)
T PRK14574 139 ISGMIMTQADAGRGGVVLKQATELAERDPTV------QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEI 212 (822)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcccCcch------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999988888 789999999999999998874 3335667777778888789999999999988544332211111
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHc---C
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH------------DTVAASVLYRLILFKY---Q 228 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~---p 228 (760)
+...+..... ..+..... .+-...+...+....+.-..+.+ -.+.|+..+..++... |
T Consensus 213 l~~~~~~~~a---~~l~~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p 285 (822)
T PRK14574 213 LQRNRIVEPA---LRLAKENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDP 285 (822)
T ss_pred HHHcCCcHHH---HHHHHhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCC
Confidence 1111111000 00000000 00000111111111111111111 3456778888888743 4
Q ss_pred Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-----
Q 004339 229 DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK----- 298 (760)
Q Consensus 229 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 298 (760)
.. ..+..-.-.++...|++.+++..|+.+.... |-.+.+....|..|+..+++.+|+.+|..++...+..
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 22 3344455667788999999999999887655 3345588899999999999999999999998755321
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCh
Q 004339 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT---------------SNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 299 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~ 363 (760)
+......|... |+.. +++++|..++.+.....| +...+...++.++...|++
T Consensus 366 ~~~~~~~L~yA-~ld~------------e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 366 DLLDADDLYYS-LNES------------EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred chHHHHHHHHH-HHhc------------ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 22223445444 5555 999999999999988544 3345777899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
.+|...++..+...| .++.++..+|.++...|.+..|...++.++.. .|.+..+.+.+|.++..+|++.+|..
T Consensus 433 ~~Ae~~le~l~~~aP-----~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 433 PTAQKKLEDLSSTAP-----ANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999 88999999999999999999999999888886 78889999999999999999999999
Q ss_pred HHHHHHHhCCCChhHH
Q 004339 444 SLLRAIHLAPSNYTLR 459 (760)
Q Consensus 444 ~~~~al~~~p~~~~~~ 459 (760)
....++...|+++.+.
T Consensus 506 ~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 506 LTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhCCCchhHH
Confidence 9999999999998543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-20 Score=190.47 Aligned_cols=430 Identities=15% Similarity=0.120 Sum_probs=339.3
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
-+++...|+++..|- ......+.+.|+.++.++++..|.+.+.|..|+.+ .-|..|...+.++-+.-|.++.
T Consensus 370 RKALe~iP~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlAlarL----etYenAkkvLNkaRe~iptd~~ 441 (913)
T KOG0495|consen 370 RKALEHIPRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLALARL----ETYENAKKVLNKAREIIPTDRE 441 (913)
T ss_pred HHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCChh
Confidence 356777787765443 33455666779999999999999888888777655 5588888899999888899998
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC-------------------------------------CCCCHHHHHH
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAG-------------------------------------EEVPIEVLNN 125 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~~~~ 125 (760)
.|+.-+.+-. +|+.+....+..+++.-...++ ....-..|+.
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~ 521 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD 521 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh
Confidence 8888888776 6777777777666654433332 2335678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
-+..+...+.++-|+.+|..+++..|....+......+ .. .+.... .-...+.+++...|.....|...+.
T Consensus 522 da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~--ek-----~hgt~E--sl~Allqkav~~~pkae~lwlM~ak 592 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMF--EK-----SHGTRE--SLEALLQKAVEQCPKAEILWLMYAK 592 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHH--HH-----hcCcHH--HHHHHHHHHHHhCCcchhHHHHHHH
Confidence 99999999999999999999998776322221110000 00 000000 0001112333466777788888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
.+...|+...|..++..++..+|++..+|+.-..+......++.|..+|.++....| ...+|+..+.+...+++.++|+
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHH
Confidence 999999999999999999999999999999888888999999999999998887655 3668888888888889999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.+++.+++.+|. ..-.|+.+|.+ +-.. ++.+.|...|...++..|+.+..|..|+.+-...|..-.
T Consensus 672 rllEe~lk~fp~-f~Kl~lmlGQi-~e~~------------~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 672 RLLEEALKSFPD-FHKLWLMLGQI-EEQM------------ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHHHHhCCc-hHHHHHHHhHH-HHHH------------HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 999999999887 78888899999 8888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC--------------------------
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-------------------------- 419 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------- 419 (760)
|..++.++.-.+| .++..|+....+-++.|+.+.|...+.+|++.||.+
T Consensus 738 AR~ildrarlkNP-----k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 738 ARSILDRARLKNP-----KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred HHHHHHHHHhcCC-----CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh
Confidence 9999999999888 788899999999999999999999999988876544
Q ss_pred --CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 420 --TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 420 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.|+.++..+|..++...++++|..+|.++++++|++..+|..+-..+...|
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 347788899999999999999999999999999999999887766655555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-19 Score=207.66 Aligned_cols=371 Identities=12% Similarity=0.060 Sum_probs=260.2
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (760)
.+...+..+-..+.+.|++..|+.+|+.+...+. .+...+..+..++...|.+..|+.+|..... | +...|..+-
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHH
Confidence 3455566677778889999999999999987653 3444555666778888999999998887654 5 455666666
Q ss_pred HHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 90 ELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 90 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
..+. .|+++.|...|..+....... ...+|..+..+|.+.|+++.|..+|..+...+
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~p----D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------------------ 502 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKA----DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------------------ 502 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------
Confidence 6666 789999999999887653321 37889999999999999999999999987643
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCCH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 247 (760)
..| +..+|..+...|.+.|++++|+.+|..+.... ..+..+|..+...|.+.|++
T Consensus 503 -----------------------v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 503 -----------------------VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred -----------------------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 222 45566667777777777777777777776543 12455677777777777777
Q ss_pred HHHHHHHHHHHHH----cCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCch
Q 004339 248 QLSIELVNEALKV----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 323 (760)
Q Consensus 248 ~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~ 323 (760)
++|..+|..+... .| +..+|..+...|.+.|++++|..+|..+.......+...|..+... |...
T Consensus 559 deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a-y~k~--------- 627 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS-CSQK--------- 627 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhc---------
Confidence 7777777777642 23 3456666666777777777777777777766544466666667666 6666
Q ss_pred HHhhcHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC
Q 004339 324 LEATHLEKAKELYTRVIVQ--HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 401 (760)
Q Consensus 324 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~ 401 (760)
|+++.|+.+|..+... .| +...|..+...|...|++++|..+|..+..... ..+..+|..+..+|.+.|+
T Consensus 628 ---G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~----~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 628 ---GDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGI----KLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred ---CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhCCC
Confidence 7777777777776654 33 355677777777777777777777777766432 1346667777777777777
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 402 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 402 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+++|+.+|+.+... ...++...|..+...|.+.|++++|+.+|..+...
T Consensus 700 ~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 700 WKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777776553 23455667777777777777777777777766543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-21 Score=181.59 Aligned_cols=348 Identities=18% Similarity=0.121 Sum_probs=216.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 004339 46 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLN 124 (760)
Q Consensus 46 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 124 (760)
.++.-++.+|.-++..|++..|+..|..++..+|++..+++..|.+|. .|+..-|+.-+.+++++.|+. ..+..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-----~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-----MAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-----HHHHH
Confidence 344455555555555555555555555555555555555555555555 455555555555555555554 45555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 125 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
..|.+++.+|.++.|..-|..++...|......... +.+ ........+....
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq---------skl-------------------~~~~e~~~l~~ql 162 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ---------SKL-------------------ALIQEHWVLVQQL 162 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH---------HHH-------------------HhHHHHHHHHHHH
Confidence 555666666666666666666555443211100000 000 0001123344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 284 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 284 (760)
..+...|++..|+.+...++++.|-++..+...+.||...|.+..|+..+..+-++..++.+.++.++.+++..|+...+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 56667788889999999999999988888888999999999999999999988888888889999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 364 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 364 (760)
+...+..++++|... ..+-. |-.. ....+.+...++ ....+.|.
T Consensus 243 L~~iRECLKldpdHK-~Cf~~-----YKkl------------kKv~K~les~e~------------------~ie~~~~t 286 (504)
T KOG0624|consen 243 LKEIRECLKLDPDHK-LCFPF-----YKKL------------KKVVKSLESAEQ------------------AIEEKHWT 286 (504)
T ss_pred HHHHHHHHccCcchh-hHHHH-----HHHH------------HHHHHHHHHHHH------------------HHhhhhHH
Confidence 999999988887631 11100 1111 222222222222 23445666
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 004339 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 444 (760)
Q Consensus 365 ~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 444 (760)
+++...+++++..|.... -....+-.+..|+..-|++.+||..+..++.. .|.++.++...+.+|.--..|+.|+..
T Consensus 287 ~cle~ge~vlk~ep~~~~-ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~d 363 (504)
T KOG0624|consen 287 ECLEAGEKVLKNEPEETM-IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHD 363 (504)
T ss_pred HHHHHHHHHHhcCCcccc-eeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666777777766662110 11234445566777777777777777777774 566677777777777777777777777
Q ss_pred HHHHHHhCCCChhHHhhHHHH
Q 004339 445 LLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 445 ~~~al~~~p~~~~~~~~la~~ 465 (760)
|++|.+.+|++..+.-.+-.+
T Consensus 364 ye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 364 YEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHHhcCcccHHHHHHHHHH
Confidence 777777777777666655443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=193.85 Aligned_cols=371 Identities=17% Similarity=0.167 Sum_probs=294.2
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+.+|..+|.+...|-....+|...|+|.+|+.--.+.++++|..+.+|..+|..+.-+|+|++|+..|.+.|..+|++..
T Consensus 26 t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 26 TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHH
Confidence 56888999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-c-----------------C----CHhHHHHHHHHHHHHHHhcCCCC-----------------------
Q 004339 84 AFIDLGELLI-S-----------------S----DTGAALDAFKTARTLLKKAGEEV----------------------- 118 (760)
Q Consensus 84 ~~~~la~~~~-~-----------------~----~~~~A~~~~~~al~~~~~~~~~~----------------------- 118 (760)
.+.+++.++. . + ++...-..|...+...+.++...
T Consensus 106 L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 106 LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 9888887763 1 0 11112223333333333221000
Q ss_pred -------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 119 -------------------------------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 119 -------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.......+|...+...++..|++.|..++.
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e------------- 252 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE------------- 252 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------
Confidence 011233445555555555555555555554
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-------HHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------VDAY 234 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~ 234 (760)
++ .....+.+.+-+|+..|.+...+.....+++..... ..+.
T Consensus 253 ------------------------------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 253 ------------------------------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred ------------------------------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 55 677788899999999999999999888888665432 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~ 314 (760)
.++|..|...++++.|+.+|.+++..... ..+.......++++.......-+.|. .......-|+. +|..
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe-~A~e~r~kGne-~Fk~ 371 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPE-KAEEEREKGNE-AFKK 371 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChh-HHHHHHHHHHH-HHhc
Confidence 45677788889999999999998876554 45556666778888887777767666 35555666888 8888
Q ss_pred HhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 004339 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 394 (760)
Q Consensus 315 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~ 394 (760)
|+|..|+..|.++|..+|+++.+|.+.|.||..+|.+..|+...+.+++++| +....|+.-|.
T Consensus 372 ------------gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-----~~~kgy~RKg~ 434 (539)
T KOG0548|consen 372 ------------GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-----NFIKAYLRKGA 434 (539)
T ss_pred ------------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-----hHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004339 395 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 447 (760)
++..+.+|+.|+..|+.++.. +|.+.++.-.+.+|+..+.......+.+++
T Consensus 435 al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999996 788899999999998876555555555555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-19 Score=206.64 Aligned_cols=423 Identities=12% Similarity=0.043 Sum_probs=335.1
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHc-c
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELLI-S 94 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~ 94 (760)
+..+...+...|.+..|..+|..+.. | +..+|..+..+|...|+++.|..+|..+...... +...|..+..+|. .
T Consensus 409 ~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 409 HAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34455667888999999999988754 4 5778889999999999999999999999876532 6677777777777 7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
|+++.|..+|..+...... ....+|..+...|.+.|++++|+.+|..+...+
T Consensus 486 G~vd~A~~vf~eM~~~Gv~----PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------------------------ 537 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVE----ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------------------------ 537 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------------------------
Confidence 8999999999998764322 137899999999999999999999999987632
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHcCCHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKARNNLQLS 250 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A 250 (760)
..| +..+|..+...|.+.|+++.|..+|..+... .| +..+|..+..+|.+.|++++|
T Consensus 538 -----------------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 538 -----------------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred -----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 344 4568889999999999999999999999763 34 467888999999999999999
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcH
Q 004339 251 IELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 329 (760)
Q Consensus 251 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 329 (760)
..+|..+.... +.++..|..+...|.+.|++++|+.+|..+....-..+..+|..+... |... |++
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a-~~k~------------G~~ 665 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV-AGHA------------GDL 665 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhC------------CCH
Confidence 99999999876 556789999999999999999999999999987655578888888888 8888 999
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 330 EKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 330 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+.|..+|..+.+.. +.+..+++.+...|.+.|++++|..+|..+..... . .+...|..+...|.+.|++++|+.+
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~---~-PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL---R-PTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---C-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998864 45788999999999999999999999999876432 1 3578899999999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChhHHhhHHHHHHHHHHh-HHhhhhcCHH--H
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA--PSNYTLRFDAGVAMQKFSAS-TLQKTRRTAD--E 483 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~-~l~~~~~~l~--~ 483 (760)
|..+... ...++..+|..+..+|.+.|+++.|..+|..+++.. |+......-++.|...+... .+........ .
T Consensus 742 f~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 742 LSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 9998875 356678888888899999999999999999998864 33222222233333222111 0100000000 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 484 VRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
..........|+.+|..+...+-.
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCC
Confidence 111123446799999999887743
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-20 Score=181.67 Aligned_cols=391 Identities=13% Similarity=0.081 Sum_probs=326.0
Q ss_pred hhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 004339 3 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----- 77 (760)
Q Consensus 3 a~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 77 (760)
|+.+-...|.+....+..+.+|...++-+.|+..+..+.... ..+.....++..+...++-.++.-.|...+..
T Consensus 86 s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL 164 (564)
T KOG1174|consen 86 AIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMAL 164 (564)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHH
Confidence 444555667778888999999999999999998887764322 34666677777777766655555555444332
Q ss_pred --------------------------CCCcHHHHHH---HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004339 78 --------------------------DPRDAQAFID---LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 127 (760)
Q Consensus 78 --------------------------~p~~~~~~~~---la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 127 (760)
.|..++.|.. ++.++. ..-+..+..++-.-.+..|.+ ..++..+|
T Consensus 165 ~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N-----vhLl~~la 239 (564)
T KOG1174|consen 165 QVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN-----EHLMMALG 239 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc-----HHHHHHHh
Confidence 2333333322 334443 234556666666666777776 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHH
Q 004339 128 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 207 (760)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~ 207 (760)
.+++..|++.+|+..|+++.. .+|......-.+|.++
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~-------------------------------------------~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLC-------------------------------------------ANPDNVEAMDLYAVLL 276 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhh-------------------------------------------CChhhhhhHHHHHHHH
Confidence 999999999999999999987 6778888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 287 (760)
...|+++.-..+...++........-|+--+...+...++..|+.+..+++..+|.+..++...|.++...++..+|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 99999999999999888888778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCChHH
Q 004339 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG-VVLA-EKGQFDV 365 (760)
Q Consensus 288 ~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~~ 365 (760)
|+.+..+.|. ....|-.|... |+.. |.+.+|.-.-+.++...|.+..++..+| .++. .-.--++
T Consensus 357 FR~Aq~Lap~-rL~~Y~GL~hs-YLA~------------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 357 FRTAQMLAPY-RLEIYRGLFHS-YLAQ------------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HHHHHhcchh-hHHHHHHHHHH-HHhh------------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHH
Confidence 9999999887 88889899998 9999 9999999999999999999999999986 5554 3344578
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
|..++.+++.+.| ....+-..+|.++...|.+..++.++++.+..+ .|...+..||.++...+.+.+|+.+|
T Consensus 423 AKkf~ek~L~~~P-----~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~---~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 423 AKKFAEKSLKINP-----IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF---PDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHhhhccCC-----ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc---cccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999 778889999999999999999999999999954 77889999999999999999999999
Q ss_pred HHHHHhCCCChhHHhhHHH
Q 004339 446 LRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 446 ~~al~~~p~~~~~~~~la~ 464 (760)
..|+.++|++....-.+-.
T Consensus 495 ~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 495 YKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHhcCccchHHHHHHHH
Confidence 9999999998766655433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-20 Score=214.46 Aligned_cols=434 Identities=12% Similarity=0.004 Sum_probs=317.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+...|..+...+...+++..|..++..++... ..+..++..+..+|.+.|+++.|..+|..... | +...|..+...
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~ 198 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGG 198 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHH
Confidence 45567777788888888888888888877643 22567788888888888888888888887753 3 45566666666
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
|. .|++++|+..|.+++...... ...++..+...+...|....+..++..++..+..... .....++....
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p----~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~---~~~n~Li~~y~- 270 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDA----EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT---FVSCALIDMYS- 270 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCC----ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc---eeHHHHHHHHH-
Confidence 66 678888888888877543221 2455555555666666666666666555543311100 00000000000
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCCHHH
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~ 249 (760)
+.+.+..+...+.. ..+.+..+|..+...|...|++++|+.+|..+.... ..+..++..+..++...|.++.
T Consensus 271 ----k~g~~~~A~~vf~~---m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 271 ----KCGDIEDARCVFDG---MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred ----HCCCHHHHHHHHHh---CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 00011111111110 123466788899999999999999999999987653 3356678889999999999999
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 250 SIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 250 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
|..++..+++.. +.+..++..+...|.+.|+++.|...|..+.. .+..+|..+... |... |+
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~ 406 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GR 406 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CC
Confidence 999999998875 56677888999999999999999999998764 266788888888 8888 99
Q ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 329 LEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 329 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
.++|+.+|+++.... ..+..++..+...+...|.+++|..+|..+.+..+.. .+...|..+..+|.+.|++++|..
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK---PRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC---CCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999987643 2356678888888999999999999999998754311 235678889999999999999999
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHH
Q 004339 408 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRST 487 (760)
Q Consensus 408 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a 487 (760)
+++++ +..++..+|..|..++...|+++.|...+++++.+.|++...+..++.+|...|
T Consensus 484 ~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G----------------- 542 (697)
T PLN03081 484 MIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG----------------- 542 (697)
T ss_pred HHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC-----------------
Confidence 88754 345678889999999999999999999999999999998888877777766655
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 004339 488 VAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 488 ~~~l~~A~~~~~~l~~~~~~ 507 (760)
.+++|.+++..+...+-.
T Consensus 543 --~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 543 --RQAEAAKVVETLKRKGLS 560 (697)
T ss_pred --CHHHHHHHHHHHHHcCCc
Confidence 578888899888877643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-19 Score=169.23 Aligned_cols=334 Identities=13% Similarity=0.146 Sum_probs=271.1
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhh
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
+|.++.-++.+|.-+. .|++..|+..|-.|+..+|++ ..+++..|.+|..+|+..-|+.-+.+++.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVle-------- 100 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLE-------- 100 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHh--------
Confidence 5667778889999777 889999999999999999997 89999999999999999999999999998
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDA 233 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~ 233 (760)
..|+...+....|.++.++|.++.|..-|..++..+|++ ..+
T Consensus 101 -----------------------------------lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 101 -----------------------------------LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred -----------------------------------cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 677888999999999999999999999999999998843 233
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH
Q 004339 234 YLRL------------AAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 301 (760)
Q Consensus 234 ~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (760)
+..+ ...+...|++..|+.++..++++.|-+..++...+.+|...|+...|+.-++.+-++... +..
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe 224 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTE 224 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chH
Confidence 3222 233456799999999999999999999999999999999999999999999999988776 888
Q ss_pred HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Q 004339 302 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 381 (760)
Q Consensus 302 ~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 381 (760)
.++.++.+ ++.. |+...++...+.+++++|++-..+- .|.++..+..
T Consensus 225 ~~ykis~L-~Y~v------------gd~~~sL~~iRECLKldpdHK~Cf~-----------------~YKklkKv~K--- 271 (504)
T KOG0624|consen 225 GHYKISQL-LYTV------------GDAENSLKEIRECLKLDPDHKLCFP-----------------FYKKLKKVVK--- 271 (504)
T ss_pred HHHHHHHH-HHhh------------hhHHHHHHHHHHHHccCcchhhHHH-----------------HHHHHHHHHH---
Confidence 99999999 9998 9999999999999999998665432 2222222211
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 382 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 382 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
.+.-+.-.+..+.|.+++...++++.. .|.. ..++..+..|+..-|++.+|+..+..+|.++|++..
T Consensus 272 -------~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 272 -------SLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred -------HHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 112234456678899999999999995 4443 445567888999999999999999999999999999
Q ss_pred HHhhHHHHHHHH-----HHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Q 004339 458 LRFDAGVAMQKF-----SASTLQKTRRTADEVRSTVAELENAVRVFSHLS 502 (760)
Q Consensus 458 ~~~~la~~~~~~-----~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~ 502 (760)
++...|.+|-.- +...++++...-..-..+...++.|.++-.+..
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 999988876321 112344444444455566777788877766544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-19 Score=208.36 Aligned_cols=436 Identities=13% Similarity=0.076 Sum_probs=241.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..|+ ...|..+...+...|+++.|..++..+++.. +.+..++..+...|.+.|+++.|..+|+.... .+...|..
T Consensus 284 ~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~ 359 (857)
T PLN03077 284 VDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTA 359 (857)
T ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHH
Confidence 3444 3345566666666777777777777666543 23456666777777777777777777766532 24445666
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
+...|. .|++++|+..|..+...... .....+..+-..+...|+++.|..++..++..+...... ....++.
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~----Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~---~~n~Li~ 432 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVS----PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV---VANALIE 432 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC----CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH---HHHHHHH
Confidence 666666 56777777777765443211 113455555556666677777777776666533100000 0000000
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
... +.+.+..+...+.. ....+..+|..+...|...|++.+|+.+|.+++...+.+..++..+...+...|.
T Consensus 433 ~y~-----k~g~~~~A~~vf~~---m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 433 MYS-----KCKCIDKALEVFHN---IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHH-----HcCCHHHHHHHHHh---CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 000 00000000000000 0011233455555555555666666666655554333344444555555555555
Q ss_pred HHHHHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHH
Q 004339 247 LQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 325 (760)
Q Consensus 247 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~ 325 (760)
.+.+..++..++... ..+..++..+...|.+.|+++.|...|... + .+..+|..+... |...
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~-~d~~s~n~lI~~-~~~~----------- 567 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E-KDVVSWNILLTG-YVAH----------- 567 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C-CChhhHHHHHHH-HHHc-----------
Confidence 555555555555432 223334445556666667777776666654 1 255666666666 6666
Q ss_pred hhcHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 326 ATHLEKAKELYTRVIVQ--HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
|+.++|+.+|+++... .| +..++..+...+.+.|.+++|..+|..+....+-. .+...|..+..+|.+.|+++
T Consensus 568 -G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 568 -GKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred -CCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHH
Confidence 7777777777766553 23 33445555556666777777777777666443210 13456666777777777777
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 483 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~ 483 (760)
+|..+++.. +..+++.+|..|-.++...|+.+.|....++++++.|++...+..++.+|...
T Consensus 643 eA~~~~~~m----~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~-------------- 704 (857)
T PLN03077 643 EAYNFINKM----PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA-------------- 704 (857)
T ss_pred HHHHHHHHC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC--------------
Confidence 777666654 23345666666666666666777776667777777777766666666665444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC
Q 004339 484 VRSTVAELENAVRVFSHLSAASNLH 508 (760)
Q Consensus 484 ~~~a~~~l~~A~~~~~~l~~~~~~~ 508 (760)
+.+++|.++...+...+-..
T Consensus 705 -----g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 705 -----GKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred -----CChHHHHHHHHHHHHcCCCC
Confidence 45778888888887765443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-19 Score=201.83 Aligned_cols=431 Identities=14% Similarity=0.064 Sum_probs=331.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQAFIDLGEL 91 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 91 (760)
.|..+...+...|++.+|+.+|..+....| -+..++..+..++...+++..|..++..++.. .| +...+..+..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 577778888999999999999999876543 36788899999999999999999999988764 45 56778888888
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
|. .|+++.|...|..... | ...+|+.+...|...|++++|+.+|.+++..++...... ....+.....
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t---~~~ll~a~~~ 236 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT---FVVMLRASAG 236 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh---HHHHHHHHhc
Confidence 88 7899999999998753 2 267899999999999999999999999987653211000 0000000000
Q ss_pred HHHH-HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 171 MLQF-KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 171 ~~~~-~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.-.. ....+....... ...| +..++..+...|.+.|++++|..+|..+. +.+..+|..+...|...|++++
T Consensus 237 ~~~~~~~~~l~~~~~~~----g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 237 LGSARAGQQLHCCVLKT----GVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred CCcHHHHHHHHHHHHHh----CCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHH
Confidence 0000 000111111111 1222 45677888999999999999999998764 4577889999999999999999
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 250 SIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 250 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
|+.+|.++.... .-+...+..+...+...|.++.|...+..+++.....+..++..+... |... |+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~-y~k~------------G~ 375 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL-YSKW------------GR 375 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH-HHHC------------CC
Confidence 999999987653 335668889999999999999999999999988755588888899999 9998 99
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
++.|..+|..+.. .+..+|+.+...|...|+.++|+.+|.++..... . -+..++..+...+...|.+++|..+
T Consensus 376 ~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~---~-Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 376 MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV---A-PNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C-CCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999998754 3677899999999999999999999999987542 1 3477788899999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHH
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTV 488 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~ 488 (760)
|+.+.......++...|..+..+|.+.|++++|...++++ ...| +..+|..|...+...+
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g------------------ 508 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHK------------------ 508 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC------------------
Confidence 9999886566777889999999999999999999998764 2333 3344555554444333
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 004339 489 AELENAVRVFSHLSAASNL 507 (760)
Q Consensus 489 ~~l~~A~~~~~~l~~~~~~ 507 (760)
.++.|..+++.+....+.
T Consensus 509 -~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 509 -NLELGRLAAEKLYGMGPE 526 (697)
T ss_pred -CcHHHHHHHHHHhCCCCC
Confidence 456666777777665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-20 Score=173.69 Aligned_cols=249 Identities=16% Similarity=0.128 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
.....+|.||+++|.+.+|.+.++..+...| .++.+..|+.+|.+..++..|+..|...+..+|.+...+...+.++..
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3445699999999999999999999999776 688999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 278 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
+++++.|.++|+.+++..|. +..+...+|.- |+-. ++.+-|+.+|++++.+.-.++..++++|.|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~-yfY~------------~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVG-YFYD------------NNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeec-cccC------------CChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 99999999999999999887 66776667766 7777 9999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+..++++-++..|.+++....... .-.++|+++|.+....|++.-|...|+-++.. ++++.+++.+||.+-.+.|+
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCc
Confidence 999999999999999998763111 45889999999999999999999999999984 78889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
...|..+|..|-.+.|.-....+|++.+
T Consensus 445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999888888765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-19 Score=192.10 Aligned_cols=383 Identities=15% Similarity=0.107 Sum_probs=260.7
Q ss_pred hhhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 004339 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR- 80 (760)
Q Consensus 2 aa~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 80 (760)
+-+++++.+|..+.+|..+|.+|...-+...|..+|.++..++|.++.++-..+..|....+++.|..+.-.+-+..|.
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999997777777664
Q ss_pred -cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 81 -DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 81 -~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
....|..+|..|. .++...|+..|+.++..+|++ ..+|..+|.+|...|.|..|++.|.++..
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-----~n~W~gLGeAY~~sGry~~AlKvF~kAs~---------- 624 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-----YNLWLGLGEAYPESGRYSHALKVFTKASL---------- 624 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-----HHHHHHHHHHHHhcCceehHHHhhhhhHh----------
Confidence 3455677888877 679999999999999999997 89999999999999999999999999987
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-------H
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------V 231 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~ 231 (760)
.+|.+.-+.|..+.+....|.|.+|+..+..++...... .
T Consensus 625 ---------------------------------LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 625 ---------------------------------LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred ---------------------------------cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 556666777777777777888888887777777654433 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------CCChHHHHHHHHHHhh-----------------------cCC
Q 004339 232 DAYLRLAAIAKARNNLQLSIELVNEALKVN--------GKYPNALSMLGDLELK-----------------------NDD 280 (760)
Q Consensus 232 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~-----------------------~g~ 280 (760)
.++++++..+...|-...|..++++.+... ..+...|..+|....- .+.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 344444444444555555555555444321 1222222222222110 000
Q ss_pred H------HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 281 W------VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 281 ~------~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
. --+.+++-..+.... .++.|+++|.- |++......... .+...|+.++.+++++..++...|+.||
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~--~~~~WyNLGin-ylr~f~~l~et~----~~~~~Ai~c~KkaV~L~ann~~~WnaLG 824 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAI--HMYPWYNLGIN-YLRYFLLLGETM----KDACTAIRCCKKAVSLCANNEGLWNALG 824 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhh--ccchHHHHhHH-HHHHHHHcCCcc----hhHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 0 122233322222221 35667777776 555332211110 2335677777777777777777777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
.+ ...|++.-|..+|-+.+...| .....|.|+|.++....+++.|...|..+..+ .|.+...|...+.+...
T Consensus 825 Vl-sg~gnva~aQHCfIks~~sep-----~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~ea 896 (1238)
T KOG1127|consen 825 VL-SGIGNVACAQHCFIKSRFSEP-----TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEA 896 (1238)
T ss_pred Hh-hccchhhhhhhhhhhhhhccc-----cchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHH
Confidence 76 555677777777777776666 55666677777766666666666666666664 45555555555555555
Q ss_pred hccHHHHHHHHHH
Q 004339 435 AEQWQDCKKSLLR 447 (760)
Q Consensus 435 ~g~~~~A~~~~~~ 447 (760)
.|+.-++...|..
T Consensus 897 vG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 897 VGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHHHHHHHh
Confidence 5555554444444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=198.77 Aligned_cols=265 Identities=21% Similarity=0.176 Sum_probs=123.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
..+.+|.+++..|++++|+.++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.++.
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~ 89 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3457799999999999999999766544 48899999999999999999999999999999999999999988888866
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+++.+|+.++..+.+..+. +..+..++.++...++++.+...+..+....
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------------- 140 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLGDYDEAEELLEKLEELP----------------------- 140 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------------
T ss_pred cccccccccccccccccccc------cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-----------------------
Confidence 88999999999998876654 5677788888999999999999999976421
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
..+.++.+++.+|.++...|++++|+.+|++++..+|++..++..++.++...|++.++...
T Consensus 141 ------------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 141 ------------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp ---------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 23467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHH
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 333 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 333 (760)
+.......|.++.++..+|.++...|++++|+.+|.+++...|. ++..+..+|.+ +... |+.+.|.
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~-l~~~------------g~~~~A~ 268 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADA-LEQA------------GRKDEAL 268 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHH-HT---------------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccc-cccc------------ccccccc
Confidence 99999888999999999999999999999999999999999888 99999999999 9988 9999999
Q ss_pred HHHHHHHh
Q 004339 334 ELYTRVIV 341 (760)
Q Consensus 334 ~~~~~al~ 341 (760)
.++.+++.
T Consensus 269 ~~~~~~~~ 276 (280)
T PF13429_consen 269 RLRRQALR 276 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99998765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-18 Score=182.95 Aligned_cols=381 Identities=17% Similarity=0.118 Sum_probs=316.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcC-----CCcHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGH-IYVQLGQIEKAQELLRKAAKID-----PRDAQA 84 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 84 (760)
....|+.++.+|...|.-..|+.+++..+... |.++..+...+. |+...+.+.+++.+..+++... .-.+.+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 34579999999999999999999999999988 777777666665 5556799999999999999842 224667
Q ss_pred HHHHHHHHcc-----C-------CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccch
Q 004339 85 FIDLGELLIS-----S-------DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 152 (760)
Q Consensus 85 ~~~la~~~~~-----~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 152 (760)
+..+|.+|.. . ...+++..+++++++.|.+ +.+.+.++.-|..+++...|+.+..+++..+
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d-----p~~if~lalq~A~~R~l~sAl~~~~eaL~l~-- 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD-----PLVIFYLALQYAEQRQLTSALDYAREALALN-- 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--
Confidence 7888887752 1 2568899999999999997 7999999999999999999999999999842
Q ss_pred hhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH
Q 004339 153 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 232 (760)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 232 (760)
...++.+|..++.++...+++..|+.+...++...|.+..
T Consensus 509 ----------------------------------------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 509 ----------------------------------------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred ----------------------------------------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 3467889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHH---------HHHHHHHHhhcCCHHHHHHHHHHhhhc---------
Q 004339 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---------LSMLGDLELKNDDWVKAKETFRAASDA--------- 294 (760)
Q Consensus 233 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~--------- 294 (760)
.......+-...++.++|+..+...+.+....+.+ ....+.+.....+..+|+..+..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 88888888888999999999999888775533322 223334444455666666555554331
Q ss_pred ----------CCCCC------hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 295 ----------TDGKD------SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 295 ----------~~~~~------~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
.|.++ ...|...+.. +... ++.+.|..++.++-.++|..+..|+..|.++.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~-~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADL-FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHH-HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 11111 1233445555 5555 88999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
..|.+.+|...|..++.++| +++.+...+|.++...|+..-|.. ++..++.. +|.++++|+++|.++.+.|
T Consensus 696 ~~~~~~EA~~af~~Al~ldP-----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDP-----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcc
Confidence 99999999999999999999 889999999999999998888877 99999996 8999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCChhHHh
Q 004339 437 QWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
+...|..+|..|+++.+.+|..-|
T Consensus 769 d~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred chHHHHHHHHHHHhhccCCCcccc
Confidence 999999999999999999987654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-17 Score=168.19 Aligned_cols=466 Identities=15% Similarity=0.050 Sum_probs=315.4
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
.+...|.++..+-..|..+...|+-++|..+...++..++.+..+|..+|.++...++|++|+.+|+.|+.+.|+|...|
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc---hhhhhcccch
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI---WLTLLDSKTK 161 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~ 161 (760)
..++.+.. .+++........+.+++.|.. -..|...+..++-.|++..|...++...+... ......
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e---- 183 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE---- 183 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH----
Confidence 99999988 679999999999999999997 78999999999999999999999988876541 100000
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
....-.....+....+..-.++......-..--+........|.++..++++++|...|...+..+|++...+..+-.++
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 00000011111111111111222111111111223345566789999999999999999999999999999988888877
Q ss_pred HHcCCHHHHH-HHHHHHHHHcCCChH--------------------------------HHHHHHHHHhhcCCHHHHHHHH
Q 004339 242 KARNNLQLSI-ELVNEALKVNGKYPN--------------------------------ALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 242 ~~~g~~~~A~-~~~~~al~~~p~~~~--------------------------------~~~~la~~~~~~g~~~~A~~~~ 288 (760)
....+.-+++ ..|...-+..|.... +...+-.+|- +... ..++
T Consensus 264 gk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k-~~~l 339 (700)
T KOG1156|consen 264 GKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEK-VAFL 339 (700)
T ss_pred HHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhH-hHHH
Confidence 5333333344 444444333332111 0001111111 1111 1122
Q ss_pred HHhh-------hcC---C--------CCChH--HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 289 RAAS-------DAT---D--------GKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 289 ~~al-------~~~---~--------~~~~~--~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
++.+ .-. + .+.+. .++.++.- |... |+++.|..+.+.++...|.-+.
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh-~D~~------------g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH-YDKL------------GDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH-HHHc------------ccHHHHHHHHHHHhccCchHHH
Confidence 2221 111 0 00122 22333333 5555 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-CCCc------
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-YNTD------ 421 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~------ 421 (760)
.+...|.++...|.++.|..++..+.+++- .+..+...-|.-..+.++.++|...+.+.-..-. .-++
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~-----aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc 481 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDT-----ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC 481 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh
Confidence 999999999999999999999999999874 3333334578888899999999988776544210 0011
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH-HHHHHHHHH------hHHhhhhcCHHHHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA-GVAMQKFSA------STLQKTRRTADEVRSTVAELENA 494 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~~~------~~l~~~~~~l~~~~~a~~~l~~A 494 (760)
......-|.+|.++|++-.|+.-|..+-.+...-..-.|.. ..|+.+..- ..+.+..++.+.+..|. ..|
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa---~~A 558 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAA---KGA 558 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHH---HHH
Confidence 33344568899999999999888877666544332222222 223222211 11344444444444443 567
Q ss_pred HHHHHHHhhcC
Q 004339 495 VRVFSHLSAAS 505 (760)
Q Consensus 495 ~~~~~~l~~~~ 505 (760)
+++|-.|...+
T Consensus 559 i~iYl~l~d~p 569 (700)
T KOG1156|consen 559 IEIYLRLHDSP 569 (700)
T ss_pred HHHHHHHhcCc
Confidence 78888887665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-21 Score=194.42 Aligned_cols=269 Identities=21% Similarity=0.200 Sum_probs=115.0
Q ss_pred HHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC
Q 004339 42 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-I-DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV 118 (760)
Q Consensus 42 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~ 118 (760)
+..|. . ..+.+|.+++..|++++|+.++.+.+. . .|+++..|..+|.+.. .++++.|+..|++++...+..
T Consensus 4 ~~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~---- 77 (280)
T PF13429_consen 4 EFGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN---- 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 34565 2 334779999999999999999976554 4 4889999999999888 779999999999999988775
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
+..+..++.+ ...+++.+|+.++..++.. . .++.
T Consensus 78 -~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-------------------------------------------~-~~~~ 111 (280)
T PF13429_consen 78 -PQDYERLIQL-LQDGDPEEALKLAEKAYER-------------------------------------------D-GDPR 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cccccccccc-ccccccccccccccccccc-------------------------------------------c-cccc
Confidence 6677777777 7899999999999887652 1 2455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
.+..++.++...++++++...+..+.... +.++..|..+|.++...|++++|+.+|++++..+|+++.++..++.++.
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI 191 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 66677788899999999999999977654 6788899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004339 277 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 356 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (760)
..|++.++...+.......|. ++..+..+|.+ |... |++++|+.+|++++..+|+++.++..+|.+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~-~~~l------------g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPD-DPDLWDALAAA-YLQL------------GRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHH-HHHH------------T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHH-hccc------------cccccccccccccccccccccccccccccc
Confidence 999999988888877776655 56667778888 8888 888888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHHH
Q 004339 357 LAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 357 ~~~~g~~~~A~~~~~~al~~ 376 (760)
+...|++++|..++.+++..
T Consensus 258 l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 258 LEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HT------------------
T ss_pred cccccccccccccccccccc
Confidence 88888888888888877653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=169.70 Aligned_cols=309 Identities=13% Similarity=0.066 Sum_probs=218.1
Q ss_pred hcCCCCCchhh---hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 7 INKPHEFIFPY---YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 7 i~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+..+|.+++.+ +..|+++....-+..+..++-.-....|+|...+..+|.+++..|++.+|+..|+++.-++|....
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~ 267 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE 267 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence 44555554433 345666666666667777777777788999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
..-.+|.++. .|+++.--......+.+.... ..-|+--+...+...++..|+.+-.+++.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t-----a~~wfV~~~~l~~~K~~~rAL~~~eK~I~-------------- 328 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT-----ASHWFVHAQLLYDEKKFERALNFVEKCID-------------- 328 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc-----hhhhhhhhhhhhhhhhHHHHHHHHHHHhc--------------
Confidence 8888888877 678877776666666665443 56677777888888888888888888877
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 242 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 242 (760)
.+|.+..++...|.++...++..+|+-.|+.+..+.|....+|-.|..+|+
T Consensus 329 -----------------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 329 -----------------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred -----------------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 667778888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHH-HHHhh-cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLG-DLELK-NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 320 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~ 320 (760)
..|.+.+|....+.++...|.+..++..+| .+++. -.--++|..++++++.+.|. ...+.+.++.+ +...
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL-~~~E------ 451 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAEL-CQVE------ 451 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHH-HHhh------
Confidence 888888888888888888888877777775 33322 12234555555555555554 44444444444 4443
Q ss_pred CchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 321 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 321 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
|.+..++.++++.+...|+ ...+..||.++...+.+.+|+.+|..++.++|
T Consensus 452 ------g~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 452 ------GPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred ------CccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 5555555555555555543 23445555555555555555555555555555
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-18 Score=199.15 Aligned_cols=411 Identities=13% Similarity=0.065 Sum_probs=284.2
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGEL 91 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 91 (760)
+..|..+...|.+.|++.+|+.+|.++.... ..+..++..+...+...|+.+.|..++..++... +.+...+..+..+
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 3344555555555555555555555554432 1123344444444555555555555555554432 2256678888888
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
|. .|+++.|...|..... | ...+|+.+...|.+.|++++|+.+|..+...+..+... .....+.....
T Consensus 333 y~k~g~~~~A~~vf~~m~~--~------d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~---t~~~ll~a~~~ 401 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMET--K------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI---TIASVLSACAC 401 (857)
T ss_pred HHhcCCHHHHHHHHhhCCC--C------CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce---eHHHHHHHHhc
Confidence 88 7899999999998642 2 25789999999999999999999999987654211100 00000000000
Q ss_pred HHH-HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 171 MLQ-FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 171 ~~~-~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.-. -....++...... ... .+..++..+...|.+.|+++.|..+|.++.. .+..+|..+...|...|++.+
T Consensus 402 ~g~~~~a~~l~~~~~~~----g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 402 LGDLDVGVKLHELAERK----GLI-SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred cchHHHHHHHHHHHHHh----CCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHH
Confidence 000 0001111111111 112 2456777788888889999999988887653 345678888888888899999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcH
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 329 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 329 (760)
|+.+|.+++...+.+...+..+...+...|..+.+...+..++...-..+...+..|... |.+. |++
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~-y~k~------------G~~ 540 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL-YVRC------------GRM 540 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH-HHHc------------CCH
Confidence 999988887655555666677777788888888888888888877655566677777777 8888 999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 330 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 330 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
+.|...|... +.+..+|+.+...|...|+.++|+.+|.++..... . .+..++..+...+...|.+++|..+|
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~---~-Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV---N-PDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C-CCcccHHHHHHHHhhcChHHHHHHHH
Confidence 9999999886 56888999999999999999999999999987532 1 23556777778899999999999999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+.....+...++...|..+..+|.+.|++++|...+++. .+.|+ ..+|..|-..+
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence 999976667788899999999999999999999999885 34554 44454444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-17 Score=177.52 Aligned_cols=390 Identities=13% Similarity=0.042 Sum_probs=294.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHH
Q 004339 27 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFK 105 (760)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~ 105 (760)
..+...|+..|-++++++|..+.+|..||.+|...-+...|..+|.+|..++|.+..++-..+..|. ..+++.|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4458889999999999999999999999999999989999999999999999999999999999998 568999988866
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhc
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (760)
.+-+..|... ....|..+|..|...+++..|+..|+.++.
T Consensus 551 ~~~qka~a~~---~k~nW~~rG~yyLea~n~h~aV~~fQsALR------------------------------------- 590 (1238)
T KOG1127|consen 551 RAAQKAPAFA---CKENWVQRGPYYLEAHNLHGAVCEFQSALR------------------------------------- 590 (1238)
T ss_pred HHhhhchHHH---HHhhhhhccccccCccchhhHHHHHHHHhc-------------------------------------
Confidence 6666555431 235677799999999999999999999987
Q ss_pred cCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh
Q 004339 186 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 265 (760)
Q Consensus 186 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 265 (760)
.+|.+...|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+...+|.|.+|+..+...+.......
T Consensus 591 ------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 591 ------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred ------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999887665443
Q ss_pred H-------HHHHHHHHHhhcCCHHHHHHHHHHhhhc-------CCCCChHHHHHHHHHH------------------HHH
Q 004339 266 N-------ALSMLGDLELKNDDWVKAKETFRAASDA-------TDGKDSYATLSLGNWN------------------YFA 313 (760)
Q Consensus 266 ~-------~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~lg~~~------------------y~~ 313 (760)
. .+...+..+...|=+..|..++++.+.. ....+...|..+|..+ ++.
T Consensus 665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~ 744 (1238)
T KOG1127|consen 665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSK 744 (1238)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHH
Confidence 3 4444444444455555555555554441 1111222222222210 111
Q ss_pred ---HHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-H-HcC-ChHHHHHHHHHHHHHhcCCCCCCchH
Q 004339 314 ---ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL-A-EKG-QFDVSKDLFTQVQEAASGSVFVQMPD 387 (760)
Q Consensus 314 ---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~-~~g-~~~~A~~~~~~al~~~p~~~~~~~~~ 387 (760)
.+...+.+..+..| +.--...+..+....|-.-...+.++.++ . ..+ +...|+.++.+++.+.. ++..
T Consensus 745 q~e~~~~l~~~d~l~Lg-~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-----nn~~ 818 (1238)
T KOG1127|consen 745 QLEKTGALKKNDLLFLG-YECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-----NNEG 818 (1238)
T ss_pred HHHhcccCcchhHHHHH-HHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-----ccHH
Confidence 00111222111101 12222333333333333222333333222 2 222 33579999999999997 7889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
.|..||.+ ...|++.-|...|-+.+.. .|.....|.++|.++....+++.|...|.++..++|.+...|...+.+..
T Consensus 819 ~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~e 895 (1238)
T KOG1127|consen 819 LWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPE 895 (1238)
T ss_pred HHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHH
Confidence 99999988 6668999999999999885 67889999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 004339 468 KFSA 471 (760)
Q Consensus 468 ~~~~ 471 (760)
.+|.
T Consensus 896 avG~ 899 (1238)
T KOG1127|consen 896 AVGR 899 (1238)
T ss_pred HHHH
Confidence 7774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-20 Score=172.81 Aligned_cols=272 Identities=18% Similarity=0.178 Sum_probs=198.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC---CC-------cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 57 IYVQLGQIEKAQELLRKAAKID---PR-------DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
+++..++...|-......+.+. |. +...-..+|.||. .|-+..|...++.+++..|. ++.+..
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfll 261 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLL 261 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHH
Confidence 4555566666665555544432 11 1222345777777 67777777777777776665 677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
|+.+|.+..++..|+..|...+. ..|.++..+..+++
T Consensus 262 LskvY~ridQP~~AL~~~~~gld-------------------------------------------~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLD-------------------------------------------SFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhh-------------------------------------------cCCchhhhhhhhHH
Confidence 88888888888888888777766 56677777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
++..+++++.|.++|+.+++.+|.++++...+|..|+-.++++-|+.+|.+++...-.+++.+.++|.+.+..++++-++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 88888888888888888888888887777777777777788888888888888887778888888888888888888888
Q ss_pred HHHHHhhhcC--CCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 286 ETFRAASDAT--DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 286 ~~~~~al~~~--~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
..|.+++... |.....+|+++|.+ .... |++..|..+|+-++..+|++..++++||.+-.+.|+.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~v-aV~i------------GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFV-AVTI------------GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhcccee-EEec------------cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 8888777653 34456677777777 6665 7888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
..|..++..+-...| ...+..++++.+
T Consensus 446 ~~Arsll~~A~s~~P-----~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMP-----DMAEVTTNLQFM 472 (478)
T ss_pred HHHHHHHHHhhhhCc-----cccccccceeEE
Confidence 888888888777777 555555555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=192.29 Aligned_cols=228 Identities=20% Similarity=0.143 Sum_probs=192.7
Q ss_pred hhhHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCcHHH
Q 004339 17 YYGLGQVQLKL---GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---------GQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 17 ~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
++..|..++.. +.+.+|+.+|++++..+|+++.+|..+|.+|... +++.+|+..+++++.++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 45566555443 3578999999999999999999999999887643 34789999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..+|.++. .|++++|+..|++++.++|++ +.+++.+|.++...|++++|+..|++++.
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--------------- 400 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMAGQLEEALQTINECLK--------------- 400 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 999999887 789999999999999999987 88999999999999999999999999988
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAK 242 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~ 242 (760)
.+|.++.+++.++.+++..|++++|+..+.+++... |+++.++..+|.++.
T Consensus 401 ----------------------------l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 401 ----------------------------LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred ----------------------------cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 556666666666777788899999999999998775 778888899999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
..|++++|...+.++....|....++..++.+|...|+ .|...+..++..
T Consensus 453 ~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 453 LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99999999999999888888888888899988888884 777777776654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-17 Score=177.41 Aligned_cols=301 Identities=15% Similarity=0.047 Sum_probs=226.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004339 50 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128 (760)
Q Consensus 50 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 128 (760)
.....|.+.+..|++..|...+.++....|.....+...|.++. +|+++.|..+|.++.+..|... ..+....+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~ 161 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHH
Confidence 34556777778899999999999998888887777888888777 7899999999999888777751 345566688
Q ss_pred HHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 129 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~ 208 (760)
++...|+++.|+..++.++. ..|.++.++..++.++.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~-------------------------------------------~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLE-------------------------------------------MAPRHKEVLKLAEEAYI 198 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHH
Confidence 89999999999999988887 56788888999999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHcC----CChHHHHHHHHHHhhcCC
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYL----RLAAIAKARNNLQLSIELVNEALKVNG----KYPNALSMLGDLELKNDD 280 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~ 280 (760)
..|+++.|...+...++..+.....+. ....-+...+..+.+...+..+....| +++.++..++..+...|+
T Consensus 199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~ 278 (409)
T TIGR00540 199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD 278 (409)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 999999999999988877544333221 222222344444555667777777776 588889999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL--YAANGAGVVLA 358 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~ 358 (760)
++.|...+.++++..|++....+..+-.+..... ++...++..++++++.+|+++ ..+..+|+++.
T Consensus 279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~------------~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP------------EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM 346 (409)
T ss_pred hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 9999999999998887643221111111101222 667788888888888888888 78888888888
Q ss_pred HcCChHHHHHHHH--HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 359 EKGQFDVSKDLFT--QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 359 ~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
..|++.+|..+|+ .++...| + +..+..+|.++..+|+.++|..+|++++..
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p-----~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQL-----D-ANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCC-----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888 5666666 4 444668888888888888888888888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-17 Score=177.45 Aligned_cols=301 Identities=13% Similarity=0.064 Sum_probs=247.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHc-
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAFIDLGELLI- 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~- 93 (760)
..+..|...+..|+|..|...+.++.+..|.....+...|.++...|+++.|..+|.++.+..|++. .+....+.++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3466788889999999999999999999998888899999999999999999999999999999875 46666788877
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.|+++.|+..++.+++..|++ +.++..++.+|...|+++.|+..+...++.++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~-----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---------------------- 218 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRH-----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---------------------- 218 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----------------------
Confidence 789999999999999999997 89999999999999999999999999986321
Q ss_pred HHhHHhhhhhhccCCCccCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQ----DYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~ 248 (760)
.+|... .+.......+...+..+.+...+..+....| +++..+..++..+...|+++
T Consensus 219 ------------------~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 219 ------------------FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 122221 1122222222344444555667777777776 58899999999999999999
Q ss_pred HHHHHHHHHHHHcCCChHHH--HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCCh--HHHHHHHHHHHHHHHhhhhcCchH
Q 004339 249 LSIELVNEALKVNGKYPNAL--SMLGDLELKNDDWVKAKETFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
+|+..+.++++..|++.... .......+..++...++..++++++..|. ++ ..+..+|.+ ++..
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l-~~~~---------- 348 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQL-LMKH---------- 348 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH-HHHc----------
Confidence 99999999999999887532 33334445567889999999999998887 77 778899999 8888
Q ss_pred HhhcHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004339 325 EATHLEKAKELYT--RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 325 ~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 376 (760)
|++++|..+|+ .++...|++.. +..+|.++...|+.++|..+|++++..
T Consensus 349 --~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 349 --GEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred --ccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999 57778887665 558999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-15 Score=149.32 Aligned_cols=415 Identities=13% Similarity=0.069 Sum_probs=294.1
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
|..+.-+...|...|+--..++++..|..+|+++|..+..+...|...+.+-++......|..++.+|+.+-|..-..|+
T Consensus 66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy 145 (677)
T KOG1915|consen 66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH
Confidence 44555567789999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
.+..+-. .|+...|.+.|++.+...|. ..+|.....+-.+....+.|..+|++.+-..|.... ...-..+
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w~P~------eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~---wikyarF 216 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEWEPD------EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSN---WIKYARF 216 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHH---HHHHHHH
Confidence 8877766 78999999999999999887 588988888888899999999999998876552211 0001111
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDAYLRLAAIAKA 243 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~ 243 (760)
....+.+.....-+..++..++ .+-....++...|..-..+..++.|..+|.-++..-|.+ ...+-.+...--+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~----~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLG----DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 1111111111122222222222 122233455667777778889999999999999888876 3344444444444
Q ss_pred cCCH---HHHH-----HHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC------hHHHHHHHHH
Q 004339 244 RNNL---QLSI-----ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD------SYATLSLGNW 309 (760)
Q Consensus 244 ~g~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~lg~~ 309 (760)
-|+. +.++ -.|+..+..+|.+.++|+.+..+....|+.+.-...|++++...|+.. .+.++-+..+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 4553 3333 346788889999999999999999999999999999999999877632 1222222222
Q ss_pred HHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc
Q 004339 310 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 385 (760)
Q Consensus 310 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 385 (760)
++.. +...+.+.+.++|+.+|.+-|+. ..+|...|....++.+...|..++-.++-..| .
T Consensus 373 -lyeE---------le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP-----K- 436 (677)
T KOG1915|consen 373 -LYEE---------LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP-----K- 436 (677)
T ss_pred -HHHH---------HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC-----c-
Confidence 2221 23388999999999999998874 44677777777777777777777777777776 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
+.++-....+-.++++++....+|++.+.. .|.+..+|...|.+-..+|+.+.|..+|.-|+...
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 334444445555666666666666666663 55556666666666666666666666666666543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=185.34 Aligned_cols=245 Identities=13% Similarity=0.006 Sum_probs=152.8
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK---------GEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
.+..|+.+|++++.++|.+ +.++..+|.+|... +++.+|+..+++++.
T Consensus 276 ~~~~A~~~~~~Al~ldP~~-----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~------------------ 332 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNS-----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE------------------ 332 (553)
T ss_pred HHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh------------------
Confidence 4567777777777777765 66677777666543 336677777777765
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|+
T Consensus 333 -------------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 333 -------------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred -------------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 5566667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
+++|+..+++++.++|.++.++..++.+++..|++++|+..+.+++...++..+..+..+|.+ |...
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~-l~~~------------ 454 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF-LSLK------------ 454 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH-HHhC------------
Confidence 777777777777777776665555555555566666666666666655433355555666666 5555
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|++++|...+.+++...|....++..++.+|...|+ .|...+..+++... ..+.....++.+|.-.|+-+.|.
T Consensus 455 G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~-----~~~~~~~~~~~~~~~~g~~~~~~ 527 (553)
T PRK12370 455 GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ-----RIDNNPGLLPLVLVAHGEAIAEK 527 (553)
T ss_pred CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh-----HhhcCchHHHHHHHHHhhhHHHH
Confidence 666666666666666666666666666666665553 55555555444332 11111122455555555555554
Q ss_pred HH
Q 004339 407 KM 408 (760)
Q Consensus 407 ~~ 408 (760)
.+
T Consensus 528 ~~ 529 (553)
T PRK12370 528 MW 529 (553)
T ss_pred HH
Confidence 44
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=175.52 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=164.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 280 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 280 (760)
|..|..+++.|...+|.-.|+.+++.+|.+..+|..||.+....++-..|+..+.++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHH---------HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC--CCHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLG---------NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYA 349 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg---------~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 349 (760)
-..|+.+|..-+...|+. .+...+ .- +... ..+..-..+|-.+....| .++.+
T Consensus 369 q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s-~~~~------------~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKS-FLDS------------SHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHHHhCccc---hhccccCccccccCCcC-CCCH------------HHHHHHHHHHHHHHHhCCCCCChhH
Confidence 777777776666544321 110000 00 0111 333444455666666666 56777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
...||.+|...|.|++|+++|+.|+...| ++..+|..||-++..-.+..+|+..|++|+.+ .|.-+.+.++||
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~P-----nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKP-----NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCC-----chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 77777777777777777777777777777 66777777777777777777777777777776 566677777777
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCC----------hhHHhhHHHHHHHHHHh
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSN----------YTLRFDAGVAMQKFSAS 472 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~ 472 (760)
.+|..+|.|.+|..+|-.||.+.+.. ..+|-.|-.++..+++.
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 77777777777777777777765441 13555555555444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=175.96 Aligned_cols=248 Identities=14% Similarity=0.104 Sum_probs=173.3
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
+..+.+-.++..+..++..+|.++.+|..||.+....++-..|+..+.++++++|++..++..||..|...|.-..|+.+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44555666777777777888999999999999999998888999999999999999999999999999999988899999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhh--cCch--------
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK--RAPK-------- 323 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~--~~~~-------- 323 (760)
+.+-+...|....... +. ..+.+..- . ...+...+..+... |+...+... .++.
T Consensus 376 L~~Wi~~~p~y~~l~~--a~---~~~~~~~~--------~--s~~~~~~l~~i~~~-fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVS--AG---ENEDFENT--------K--SFLDSSHLAHIQEL-FLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHhCccchhccc--cC---ccccccCC--------c--CCCCHHHHHHHHHH-HHHHHHhCCCCCChhHHhhhHHH
Confidence 9888887765432111 00 01111100 0 00011222222222 222222111 1111
Q ss_pred -HHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 324 -LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 324 -~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
...|.|++|+.+|+.+|...|++...|+.||-.+....+..+|+..|++|+++.| ....++++||.+++.+|.|
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhH
Confidence 0128899999999999999999999999999999988899999999999999998 7888999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC---c-----HHHHHHHHHHHHHhccHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNT---D-----AQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~---~-----~~~~~~la~~~~~~g~~~~A~ 442 (760)
.+|+.+|-.||.+..... . -.+|-.|-.++..+++.+-+.
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999888753311 1 245555555555566555433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-16 Score=168.24 Aligned_cols=297 Identities=13% Similarity=0.089 Sum_probs=184.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHc
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL-GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-IDLGELLI 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 93 (760)
..+..|...+..|+|+.|...+.+..... +++..++.+ +.+....|+++.|..+|.++.+.+|++..+. ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34677888888999999998887765543 345555555 5565999999999999999999999875443 44477777
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHH
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 172 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 172 (760)
.|+++.|+..++++....|++ +.++..++.+|...|+++.|+..+..+.+..+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~-----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~--------------------- 218 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRH-----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV--------------------- 218 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC---------------------
Confidence 889999999999999999997 89999999999999999999999999876321
Q ss_pred HHHhHHhhhhhhccCCCccCCcchHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Q 004339 173 QFKDMQLFHRFENDGNHVELPWNKVT-----VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 247 (760)
.++.... ++..+........+.+....++.......|+++.++..++..+...|+.
T Consensus 219 -------------------~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 219 -------------------GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred -------------------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 1111111 1111111111222223333333333333444555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
++|...+.++++ .|.++.+...++.+ .. +
T Consensus 280 ~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~------------------------------------------------~ 308 (398)
T PRK10747 280 DTAQQIILDGLK-RQYDERLVLLIPRL--KT------------------------------------------------N 308 (398)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHhhc--cC------------------------------------------------C
Confidence 555555555555 22233322222222 11 4
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
++..++..+++.++.+|+++..+..+|.++...|++.+|..+|++++...| + ...+..++.++..+|+.++|..
T Consensus 309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-----~-~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-----D-AYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----C-HHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555555555555555555555555555555555555555554 2 3334455555555555555555
Q ss_pred HHHHHHhh
Q 004339 408 MYQNCLRK 415 (760)
Q Consensus 408 ~~~~al~~ 415 (760)
+|++++..
T Consensus 383 ~~~~~l~~ 390 (398)
T PRK10747 383 MRRDGLML 390 (398)
T ss_pred HHHHHHhh
Confidence 55555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-16 Score=166.59 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=217.3
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
-|.+.. .|++..|...+.++....+. +...+...+.+....|+++.|..+|.++..
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~~~~-----p~l~~llaA~aA~~~g~~~~A~~~l~~A~~------------------ 146 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADHAEQ-----PVVNYLLAAEAAQQRGDEARANQHLERAAE------------------ 146 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------
Confidence 344433 67888777655554333211 233334445555888888888888888876
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 245 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 245 (760)
.+|+.. ......+.++...|+++.|+..+++++...|+++.++..++.+|...|
T Consensus 147 -------------------------~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 147 -------------------------LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred -------------------------cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 344443 233345888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHHcCCChH--------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhh
Q 004339 246 NLQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 317 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~ 317 (760)
+++.|+.++..+.+..+.++. ++..+........+.+....++.......|. ++.+...++.. +...
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~-~~~~~~~~A~~-l~~~--- 276 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH-QVALQVAMAEH-LIEC--- 276 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC-CHHHHHHHHHH-HHHC---
Confidence 888888888888877665443 2222222222333445555555555555554 78888888888 8888
Q ss_pred hhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 004339 318 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 318 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~ 397 (760)
|+.+.|...+.+++.. |.++.....++.+ ..+++.+++..+++.++..| +++..++.+|.++.
T Consensus 277 ---------g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P-----~~~~l~l~lgrl~~ 339 (398)
T PRK10747 277 ---------DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHG-----DTPLLWSTLGQLLM 339 (398)
T ss_pred ---------CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHH
Confidence 9999999999999984 4455544444443 44999999999999999999 89999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 398 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..+++++|..+|++++.. .++...+..++.++..+|+.++|..+|++++.+.
T Consensus 340 ~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999995 3556667899999999999999999999998864
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-17 Score=148.50 Aligned_cols=205 Identities=24% Similarity=0.290 Sum_probs=103.3
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
+.+.+|.-|+..|++..|...++++|+.+|++..+|..+|.+|...|..+.|.+.|++++.++|++.+++.+.|..++ +
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 455555556666666666666666666666666666666666666666666666666666665555555555554444 4
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
|.+++|...|.+|+.. |..+. ++.+|.++|.|..+.|+++.|..+|++++.
T Consensus 117 g~~~eA~q~F~~Al~~-P~Y~~--~s~t~eN~G~Cal~~gq~~~A~~~l~raL~-------------------------- 167 (250)
T COG3063 117 GRPEEAMQQFERALAD-PAYGE--PSDTLENLGLCALKAGQFDQAEEYLKRALE-------------------------- 167 (250)
T ss_pred CChHHHHHHHHHHHhC-CCCCC--cchhhhhhHHHHhhcCCchhHHHHHHHHHH--------------------------
Confidence 4555555555544432 22111 234444455555555555555555544444
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
.+|+.+.....++..++..|+|..|..++.......+.....+.....+....|+-..+-.+=
T Consensus 168 -----------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 168 -----------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred -----------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333444444444444444555555544444444444444444444444444444444444444
Q ss_pred HHHHHHcCCChH
Q 004339 255 NEALKVNGKYPN 266 (760)
Q Consensus 255 ~~al~~~p~~~~ 266 (760)
.++...+|..+.
T Consensus 231 ~qL~r~fP~s~e 242 (250)
T COG3063 231 AQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhCCCcHH
Confidence 444444444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-15 Score=151.69 Aligned_cols=427 Identities=13% Similarity=0.121 Sum_probs=279.2
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
..++.-...+...|+|++|+....+++...|++..+++..-.++.+.++|++|+.+.++-....-.+ ...+.-+.|.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 4667777788899999999999999999999999999999999999999999995544432222112 22256777766
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+..++|+..+. .+++. +..++...|.+++++|+|++|+.+|+.++..+...... ......+.
T Consensus 92 lnk~Dealk~~~---~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~---------~~r~nl~a 154 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE---------ERRANLLA 154 (652)
T ss_pred cccHHHHHHHHh---ccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH---------HHHHHHHH
Confidence 789999999998 22222 25678889999999999999999999997643211000 00000000
Q ss_pred HHhHHhhhhhhc-cCCCccCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---------------CcHHHHHH
Q 004339 174 FKDMQLFHRFEN-DGNHVELPW-NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---------------DYVDAYLR 236 (760)
Q Consensus 174 ~~~~~~~~~l~~-~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------------~~~~~~~~ 236 (760)
...++.. ....+...| +....+|+.|.++...|+|.+|++.++.++.+.. .-..+...
T Consensus 155 -----~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 155 -----VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred -----HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 0000000 011112223 3668999999999999999999999999954421 12346788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC---CH-H-HHHHHHHHhhhcC---------CCCChHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND---DW-V-KAKETFRAASDAT---------DGKDSYA 302 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~-~-~A~~~~~~al~~~---------~~~~~~~ 302 (760)
|+.++...|+..+|...|..++..+|.+........+-+.... ++ + .++..++...... .......
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765532222211111100 00 0 0000110000000 0000001
Q ss_pred HHHHHHHHHHHH-H---hh-----hhcCc------------hHHhhcHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc
Q 004339 303 TLSLGNWNYFAA-L---RN-----EKRAP------------KLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEK 360 (760)
Q Consensus 303 ~~~lg~~~y~~~-~---~~-----~~~~~------------~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 360 (760)
+.+.+.+.++.. . +. ....| ......+..|..++......+|.+ ..+...++.+.+..
T Consensus 310 ~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 310 YRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 111111100000 0 00 00000 011145788888999988889987 66888899999999
Q ss_pred CChHHHHHHHH--------HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-----HHHHHH
Q 004339 361 GQFDVSKDLFT--------QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLY 427 (760)
Q Consensus 361 g~~~~A~~~~~--------~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~ 427 (760)
|++..|+.++. ...+.. ..|.+-..+-..++..++-+.|...+..++..+..... ...+..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~------~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAK------HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhc------cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 99999999999 444433 45667777777888888888888888888776432211 344556
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
++.+-.+.|+-++|...+++.++.+|++..+...+..+|..+.
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 6777778899999999999999999999998888877765553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-17 Score=148.69 Aligned_cols=205 Identities=20% Similarity=0.132 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
..+...||.-|+..|++..|...++++|+.+|++..+|..++.+|. .|..+.|.+.|++|+.+.|++ ..++++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-----GdVLNNY 109 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-----GDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-----cchhhhh
Confidence 4688999999999999999999999999999999999999999999 899999999999999999998 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
|.+++.+|.|++|...|.+++... ..+..+.++-++|.|
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P-----------------------------------------~Y~~~s~t~eN~G~C 148 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADP-----------------------------------------AYGEPSDTLENLGLC 148 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCC-----------------------------------------CCCCcchhhhhhHHH
Confidence 999999999999999999998732 455667899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
..+.|+++.|..+|++++..+|+.+.+...++..++..|++-.|..+++......+-....+.....+....|+-..+..
T Consensus 149 al~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888899999999998
Q ss_pred HHHHhhhcCCCC
Q 004339 287 TFRAASDATDGK 298 (760)
Q Consensus 287 ~~~~al~~~~~~ 298 (760)
+=.+....+|..
T Consensus 229 Y~~qL~r~fP~s 240 (250)
T COG3063 229 YQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhCCCc
Confidence 888888888863
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-17 Score=164.84 Aligned_cols=231 Identities=14% Similarity=0.075 Sum_probs=183.4
Q ss_pred CCHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 211 HDTVAASVLYRLILFKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 211 g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+..+.++..+.+++...| ..+..|+.+|.++...|++.+|+..|.+++.++|+++.+|+.+|.++...|+++.|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 466788888888886443 3467799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHH
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 366 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 366 (760)
.|.+++.+.|. ...++..+|.+ ++.. |+++.|+..|++++..+|+++..... ..++...+++.+|
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~-l~~~------------g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A 184 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIA-LYYG------------GRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQA 184 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHH
Confidence 99999999988 78899999999 8888 99999999999999999998853222 2234467889999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-----CCCcHHHHHHHHHHHHHhccHHHH
Q 004339 367 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-----YNTDAQILLYLARTHYEAEQWQDC 441 (760)
Q Consensus 367 ~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~la~~~~~~g~~~~A 441 (760)
+..|.+++...+ +..|. .+.+++..|++..+ ..+..+...+. .+..+.+|+++|.++...|++++|
T Consensus 185 ~~~l~~~~~~~~-------~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 185 KENLKQRYEKLD-------KEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHhhCC-------ccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999988775433 22232 46666777877554 34444443211 233478999999999999999999
Q ss_pred HHHHHHHHHhCC-CChhHHhhHHHH
Q 004339 442 KKSLLRAIHLAP-SNYTLRFDAGVA 465 (760)
Q Consensus 442 ~~~~~~al~~~p-~~~~~~~~la~~ 465 (760)
+.+|++|+.++| +.....+.+..+
T Consensus 256 ~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 256 AALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 999999999997 555555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-17 Score=160.30 Aligned_cols=200 Identities=23% Similarity=0.187 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
+.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++. .|+++.|+..|.+++...|.. ..++..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-----GDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHH
Confidence 3444444444444444444444444444444444444444444444 344444444444444444433 3455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
|.++...|++++|+..|.+++... ..+....+++.+|.+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDP-----------------------------------------LYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc-----------------------------------------ccccchHHHHHHHHH
Confidence 555555555555555555554311 112334455555666
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+...|+++.|..+|.+++...|.+..++..+|.++...|++++|+.++.+++...|.++..+..++.++...|+++.|..
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 66666666666666666666666555666666666666666666666666665555555555556666666666666665
Q ss_pred HHHHhhh
Q 004339 287 TFRAASD 293 (760)
Q Consensus 287 ~~~~al~ 293 (760)
+...+..
T Consensus 225 ~~~~~~~ 231 (234)
T TIGR02521 225 YGAQLQK 231 (234)
T ss_pred HHHHHHh
Confidence 5554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=162.08 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=172.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+..++.+|.+|...|++..|+..|.+++..+|+++.+|+.+|.++...|+++.|+..|.+++.++|++..++..+|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
+...|++++|+..|.+++...|. ++.....+ .+ +... +++.+|+..|.+++...+...+. .+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~~~~~~~-~l-~~~~------------~~~~~A~~~l~~~~~~~~~~~~~---~~ 203 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DPYRALWL-YL-AESK------------LDPKQAKENLKQRYEKLDKEQWG---WN 203 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH-HH-HHcc------------CCHHHHHHHHHHHHhhCCccccH---HH
Confidence 99999999999999999999987 44321111 11 2223 78999999998877654333222 45
Q ss_pred HHHHHcCChHHHHHHHHHHH-------HHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC-CcHHHHH
Q 004339 355 VVLAEKGQFDVSKDLFTQVQ-------EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TDAQILL 426 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~ 426 (760)
.++...|++..+ ..+..+. ++.| ..+.+|+++|.++..+|++++|+.+|++++.. +| +.++..+
T Consensus 204 ~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~-----~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~--~~~~~~e~~~ 275 (296)
T PRK11189 204 IVEFYLGKISEE-TLMERLKAGATDNTELAE-----RLCETYFYLAKYYLSLGDLDEAAALFKLALAN--NVYNFVEHRY 275 (296)
T ss_pred HHHHHccCCCHH-HHHHHHHhcCCCcHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCchHHHHHH
Confidence 666667776554 2444433 4444 66789999999999999999999999999996 44 3355555
Q ss_pred HHHHHHHHhc
Q 004339 427 YLARTHYEAE 436 (760)
Q Consensus 427 ~la~~~~~~g 436 (760)
.+..+....+
T Consensus 276 ~~~e~~~~~~ 285 (296)
T PRK11189 276 ALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHh
Confidence 5554444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-16 Score=155.93 Aligned_cols=204 Identities=17% Similarity=0.111 Sum_probs=169.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
+..+.+++.+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+.++.+++...|.++.++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCC-CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 352 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 352 (760)
++...|++.+|+.+|.+++...+ ......+..+|.+ +... |+++.|..+|.+++..+|.++.++..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC-ALKA------------GDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 99999999999999999987532 1244566677777 7777 88888888888888888887777888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 353 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 353 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+|.++...|++++|+.++.+++...| ..+..+..++.++...|+++.|..+.+.+...
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYN-----QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888888888888888888877755 56777777777888888888887776666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-14 Score=140.18 Aligned_cols=362 Identities=16% Similarity=0.106 Sum_probs=224.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHH
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAAL 101 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~ 101 (760)
++...+|..|+.+++-.+..+... ...-..+|.|++.+|+|++|+..|.-+...+.-+...+.+|+.|+. .|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 344556666666666555433222 2444556666666666666666666666554445556666666655 56666655
Q ss_pred HHHHHHHH-----------------------HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 102 DAFKTART-----------------------LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 102 ~~~~~al~-----------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
..-.++-+ ..... ....+-...||.+++..-.|.+|+.+|.+++.
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L--qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---------- 179 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL--QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---------- 179 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH--hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 54433211 00000 00123345566677777777777777777775
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.+|....+-..+|.||+++.-|+-+..++.-.+...|+.+-+...++
T Consensus 180 ---------------------------------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 180 ---------------------------------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred ---------------------------------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 55666677778888999998888888888888888888888888777
Q ss_pred HHHHHc--CCHHHHH----------------HHHH----------HHHHHcC----CChHHHHHHHHHHhhcCCHHHHHH
Q 004339 239 AIAKAR--NNLQLSI----------------ELVN----------EALKVNG----KYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 239 ~~~~~~--g~~~~A~----------------~~~~----------~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
...++. |+..++. .+++ -+++.-| ..|++..+|...|+.+++..+|+.
T Consensus 227 cn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~ 306 (557)
T KOG3785|consen 227 CNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAIS 306 (557)
T ss_pred HHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHH
Confidence 766553 2222111 1111 1122222 245677788888888888888888
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChH
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ--HTSNLYAANGAGVVLAEKGQFD 364 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ 364 (760)
.++. ..|. .++-++..|.+ +........ ...+..-|...|+-+-.. .-+.+.....+|.+++-..+|+
T Consensus 307 L~Kd---l~Pt-tP~EyilKgvv-~aalGQe~g-----SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 307 LCKD---LDPT-TPYEYILKGVV-FAALGQETG-----SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred HHhh---cCCC-ChHHHHHHHHH-HHHhhhhcC-----cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 7764 3344 66666666666 554411110 013444555555443221 1223445566777777777888
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 365 ~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
+.+.++..+....- ++....+++|.++...|+|.+|.+.|-++-. +. .+.......||+||...|.+.-|..
T Consensus 377 dVl~YlnSi~sYF~-----NdD~Fn~N~AQAk~atgny~eaEelf~~is~--~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 377 DVLTYLNSIESYFT-----NDDDFNLNLAQAKLATGNYVEAEELFIRISG--PEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHhc-----CcchhhhHHHHHHHHhcChHHHHHHHhhhcC--hhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 88888877766654 5667788899999999999999988876654 23 2235556688999999999988877
Q ss_pred HHHH
Q 004339 444 SLLR 447 (760)
Q Consensus 444 ~~~~ 447 (760)
.+-+
T Consensus 450 ~~lk 453 (557)
T KOG3785|consen 450 MMLK 453 (557)
T ss_pred HHHh
Confidence 7643
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=157.22 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=165.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
-....|..++....|..|+..|..++...|+++..|...+.++...|+|+.|.-..++.++++|..+..+...+.|+. .
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 456677777888888888888888888888888888888888888888888888888888888887777777776665 3
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
++...|...|+. ..++ ....|+..++..+..
T Consensus 131 ~~~i~A~~~~~~-------------~~~~-----------~~anal~~~~~~~~s------------------------- 161 (486)
T KOG0550|consen 131 SDLIEAEEKLKS-------------KQAY-----------KAANALPTLEKLAPS------------------------- 161 (486)
T ss_pred HHHHHHHHHhhh-------------hhhh-----------HHhhhhhhhhccccc-------------------------
Confidence 444444443330 0100 111222222222110
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
....|....+.+.-+.++...|+++.|...--.++++++.+..+++..|.+++..++.+.|+..|
T Consensus 162 ---------------~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf 226 (486)
T KOG0550|consen 162 ---------------HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHF 226 (486)
T ss_pred ---------------ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHH
Confidence 00123333444455555555566666655555555555555555555555555555555555555
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHH
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 334 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 334 (760)
++++.++|++..+-...-. +. ....+..-|+- .+.. |++..|.+
T Consensus 227 ~qal~ldpdh~~sk~~~~~----------------------~k-~le~~k~~gN~-~fk~------------G~y~~A~E 270 (486)
T KOG0550|consen 227 QQALRLDPDHQKSKSASMM----------------------PK-KLEVKKERGND-AFKN------------GNYRKAYE 270 (486)
T ss_pred hhhhccChhhhhHHhHhhh----------------------HH-HHHHHHhhhhh-Hhhc------------cchhHHHH
Confidence 5555555543321111000 00 11112222333 3333 55555555
Q ss_pred HHHHHHhhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 335 LYTRVIVQHTSN----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 335 ~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
+|..+|.++|++ ...|.++|.+...+|+..+|+.....++.++| ....++...|.|+..+++|++|++.|+
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-----syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-----SYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555543 22455555555555555555555555555555 455555555555555555555555555
Q ss_pred HHHhh
Q 004339 411 NCLRK 415 (760)
Q Consensus 411 ~al~~ 415 (760)
++++.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 55554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-15 Score=158.42 Aligned_cols=247 Identities=14% Similarity=0.109 Sum_probs=204.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 261 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 261 (760)
..|....+...++..|...|+|+.|+..|+.++.. +|........+|.+|...+++.+|+.+|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 56777778888999999999999999999999988 66666667779999999999999999999999863
Q ss_pred ------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-------CChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 262 ------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-------KDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 262 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
|....++..|+.+|...|++.+|..+++.++.+... .-...+..++.+ +... +.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~-~~~~------------~~ 340 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI-LQSM------------NE 340 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH-HHHh------------cc
Confidence 333458889999999999999999999999886422 123345566666 6666 99
Q ss_pred HHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHHH
Q 004339 329 LEKAKELYTRVIVQH--------TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 329 ~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~~ 397 (760)
++.|..+|++++++. |.-+..+.+||.+|..+|+|.+|..+|++|+.+.. +...+.....++++|..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 999999999988762 23456889999999999999999999999999874 1112244667889999999
Q ss_pred HcCCHHHHHHHHHHHHhhh----c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 398 AQGNFALAMKMYQNCLRKF----Y-YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+.+++..|...|..++... + .|+-...+.+||.+|..+|+++.|+++..+++..
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999987764 1 2233778889999999999999999999998853
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-14 Score=140.28 Aligned_cols=379 Identities=15% Similarity=0.124 Sum_probs=278.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------cCC-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK--------------IDP- 79 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 79 (760)
..-..+|.|++..|+|++|+..|.-+...+..+.+.+.+||.|++-+|.|.+|..+..++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 35577899999999999999999999887777889999999999999999999887766532 111
Q ss_pred -----------CcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004339 80 -----------RDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 80 -----------~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 147 (760)
+...-.+.|+.+.. ...|.+|+..|.+++.-+|.. ..+-..+|.||+++.-|+-+..++.-.+
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-----~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-----IALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-----hhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 11122344555544 558999999999999998886 6677889999999999999999888877
Q ss_pred cccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Q 004339 148 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL----- 222 (760)
Q Consensus 148 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----- 222 (760)
. ..|+.+.+....+..+++.=+-..|..-...
T Consensus 213 ~-------------------------------------------q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 213 R-------------------------------------------QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred H-------------------------------------------hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 6 5667777777766666554222222211111
Q ss_pred -----------------------HHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 223 -----------------------ILFKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 223 -----------------------~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
+++.-| ..+.+.++|+..|+.+++..+|+.++.. ++|..|.-+...|.++
T Consensus 250 ~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 250 DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVF 326 (557)
T ss_pred cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHH
Confidence 111122 2467889999999999999999988754 5899999999999999
Q ss_pred hhcCCHHHHHHHHHHhh---hcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH
Q 004339 276 LKNDDWVKAKETFRAAS---DATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al---~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 347 (760)
...|+-....++++-+- .+... ........++.+ ++.. .+|+..+.++...-....++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------------~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------------FQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------------HHHHHHHHHHHHHHHHhcCcc
Confidence 98887544444333222 21111 012223456666 6666 889999999998888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHH
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILL 426 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 426 (760)
...+++|..++..|+|.+|.+.|-++-...- .+.......||.||+..+...-|..+|-+.- .|.+ ...+-
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLq 465 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQ 465 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHH
Confidence 8899999999999999999999987653321 1345566789999999999999998875432 2333 56666
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+|..+++.+.+--|.+.|...-.++|+-...--..|-|
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchH
Confidence 889999999999999999998888888654444444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-15 Score=153.50 Aligned_cols=241 Identities=12% Similarity=-0.048 Sum_probs=208.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..+....++-.+-.++...+.+++|+..+.+++.++|.+..+|...+.++..+| .+.+++.++.+++..+|++..+|..
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 344556677666677888899999999999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHHhhcCCH--HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 271 LGDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 271 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
.+.++...|.. ..++.++.+++...|. +..+|...+.+ +... |.++.|+.++.++|..+|.+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchh
Confidence 99999888874 7889999999999998 89999999999 8888 9999999999999999999999
Q ss_pred HHHHHHHHHHHc---CCh----HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhc
Q 004339 349 AANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 349 ~~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 417 (760)
+|+.++.++... |.+ +.++.+..+++..+| .+..+|..++.++.. +++..+|+..+..++..
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-- 250 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-- 250 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--
Confidence 999999998876 333 478888999999999 889999999999988 45677899999998874
Q ss_pred CCCcHHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHhCC
Q 004339 418 YNTDAQILLYLARTHYEAE------------------QWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 418 ~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p 453 (760)
.+..+.++..|+.+|.... ...+|..++...-+.+|
T Consensus 251 ~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 251 DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 6778899999999998643 23556666666655555
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=154.49 Aligned_cols=275 Identities=14% Similarity=0.107 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.-....|..++....|..|+..|..++. ..|+++..
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~-------------------------------------------~~pd~a~y 85 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAID-------------------------------------------MCPDNASY 85 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHH-------------------------------------------hCccchhh
Confidence 34456678888999999999999999998 55677888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHc---
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL---------------KVN--- 261 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------------~~~--- 261 (760)
|.+.+.++...|+|+.|.-..+..+.+.|.....+...+.++...+...+|...|+..- ..+
T Consensus 86 y~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~ 165 (486)
T KOG0550|consen 86 YSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE 165 (486)
T ss_pred hchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC
Confidence 99999999999999999999999999999999888899999888888877776554211 111
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 262 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 262 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
|....+....+.++...|++..|+..--.++++.+. +.++++..|.+ ++.. .+.+.|+..|++++.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~-~yy~------------~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLC-LYYN------------DNADKAINHFQQALR 231 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccc-cccc------------cchHHHHHHHhhhhc
Confidence 223345667788999999999999999999998887 88888888988 7766 899999999999999
Q ss_pred hCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 342 QHTSNLY------------AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 342 ~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
++|+... .+-.-|.-.++.|+|..|.++|..+|.++|.+.. .++..|.++|.+...+|+..+|+...
T Consensus 232 ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 232 LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-TNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-hhHHHHHHhHhhhcccCCchhhhhhh
Confidence 9997543 5666788899999999999999999999996554 46888999999999999999999999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..++.+ ++.-..++...|.|+..+++|+.|++.|++|++...+
T Consensus 311 ~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 311 NEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999997 6667999999999999999999999999999998765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.8e-16 Score=156.10 Aligned_cols=224 Identities=14% Similarity=0.019 Sum_probs=197.0
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
|...|.+..++-.+-.++...+.+++|+..+.++|.++|.+..+|..++.++..+| .+.+++.++.+++..+|++..+|
T Consensus 30 i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 30 IAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 34445555566555566778899999999999999999999999999999999998 68999999999999999999999
Q ss_pred HHHHHHHc-cCC--HhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 86 IDLGELLI-SSD--TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 86 ~~la~~~~-~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
...+.++. .+. +..++.++.+++.++|++ ..+|...+.++...|.+++|+.++.++|.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-----y~AW~~R~w~l~~l~~~~eeL~~~~~~I~-------------- 170 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKN-----YHAWSHRQWVLRTLGGWEDELEYCHQLLE-------------- 170 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------
Confidence 99998876 564 378899999999999997 89999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHcCCcHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI---HDT----VAASVLYRLILFKYQDYVDAYL 235 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~~l~~~p~~~~~~~ 235 (760)
.+|.+..+|+.++.++... |.+ +.++.+..+++..+|.+..+|.
T Consensus 171 -----------------------------~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~ 221 (320)
T PLN02789 171 -----------------------------EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWR 221 (320)
T ss_pred -----------------------------HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHH
Confidence 5678889999999888776 333 5788888999999999999999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 236 RLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 236 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
.++.++.. .+...+|+..+..++...|.++.++..|+.+|...
T Consensus 222 Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 222 YLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 99999987 45667899999999999999999999999999863
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-13 Score=148.77 Aligned_cols=349 Identities=14% Similarity=0.125 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
.+++...+.++...|++++|+.++..... .-++...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 57788888999999999999999987654 34467788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
+-..|.++..+|++++|...|..++..+|++...+..+..+..... ....-..+|......+|....+...- ..
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~ 119 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LD 119 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhh-cc
Confidence 8899999999999999999999999999999999999988873333 56777888888888888755443322 22
Q ss_pred HhhcCCHHHH-HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH---HHhh--------
Q 004339 275 ELKNDDWVKA-KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR---VIVQ-------- 342 (760)
Q Consensus 275 ~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~---al~~-------- 342 (760)
+..-..|... ..++...+... -|..+..+-.+ |... ....-...++.. .+..
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~Kg---vPslF~~lk~L-y~d~------------~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRKG---VPSLFSNLKPL-YKDP------------EKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhcC---CchHHHHHHHH-HcCh------------hHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 2222234333 34445555443 33344444444 4322 222222222222 2211
Q ss_pred ----CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 343 ----HTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 343 ----~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
.|.. .++++.+|..|...|++++|+.++.+++...| +.++.++..|.+|-..|++.+|...++.+..+
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L- 257 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-----TLVELYMTKARILKHAGDLKEAAEAMDEAREL- 257 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-
Confidence 1222 35778899999999999999999999999999 88999999999999999999999999999997
Q ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 004339 417 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 496 (760)
Q Consensus 417 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~ 496 (760)
+..|-.+....+..+++.|++++|...+.....-+- ++....+-..|++... ..+.+.....++..|+..+....+
T Consensus 258 -D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~--e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 258 -DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFET--ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred -ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 778888888999999999999999999987755442 3332222223332221 134445555689999999999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHH--HHHHHHH--HHHHHHHHHHHHHHH
Q 004339 497 VFSHLSAASNLHLHGFDEKKI--NTHVEYC--KHLLDAAKIHREAAE 539 (760)
Q Consensus 497 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~~l~~~~~~~~~~~ 539 (760)
+|..+....-. +|.|++++. +..+.+. .+-+......++.+.
T Consensus 334 ~f~~~~~DQfD-FH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~ 379 (517)
T PF12569_consen 334 HFDDFEEDQFD-FHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK 379 (517)
T ss_pred HHHHHhccccc-HHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 99999887765 678888843 4444443 344444444444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-14 Score=137.81 Aligned_cols=274 Identities=16% Similarity=0.160 Sum_probs=229.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHH
Q 004339 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 203 (760)
Q Consensus 124 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~l 203 (760)
+..|.-+.-..+.++|+..|..++. .+|....+.+.|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~-------------------------------------------~d~~t~e~~ltL 75 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQ-------------------------------------------EDPETFEAHLTL 75 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHh-------------------------------------------cCchhhHHHHHH
Confidence 4456666778899999999999987 677888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
|.+|...|..+.|+.+-+.++. .|+. ..+...||.-|+..|-++.|...|..+......-..++..|..+|...
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t 154 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT 154 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh
Confidence 9999999999999999888876 4543 356788999999999999999999998876666677999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
.+|.+|+..-.+...+.+... -+.++.+ |+........ ..+++.|+..+.+++..+|+++.+-+.+|.++.
T Consensus 155 reW~KAId~A~~L~k~~~q~~---~~eIAqf-yCELAq~~~~-----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTY---RVEIAQF-YCELAQQALA-----SSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccc---hhHHHHH-HHHHHHHHhh-----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 999999999999998876532 1233444 3333222211 189999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 438 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 438 (760)
..|+|..|++.+..+++.+|. -.+.+...|..||..+|+..+.+.++..+...+ +.+.+...++..-....-.
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~---~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPE----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN---TGADAELMLADLIELQEGI 298 (389)
T ss_pred hccchHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc---CCccHHHHHHHHHHHhhCh
Confidence 999999999999999999983 447889999999999999999999999999953 4566667777777777788
Q ss_pred HHHHHHHHHHHHhCCCChh
Q 004339 439 QDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 439 ~~A~~~~~~al~~~p~~~~ 457 (760)
+.|..++.+-+...|+-..
T Consensus 299 ~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 299 DAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHHHHHHHHhhCCcHHH
Confidence 8999999999999996433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=161.14 Aligned_cols=250 Identities=19% Similarity=0.150 Sum_probs=209.2
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--- 77 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 77 (760)
.+|.-..+...+|..|..+|+|+.|+..|+.++.. .|.-...+..+|.+|..++++.+|+.+|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999998 5655666777999999999999999999999976
Q ss_pred -----CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 78 -----DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE---EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 78 -----~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
+|..+.++.+||.+|. .|++.+|..++++|+.+...... +.....+.+++.++...+.+++|+.++.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4666778999999998 88999999999999999876321 22356788899999999999999999999987
Q ss_pred ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Q 004339 149 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY- 227 (760)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~- 227 (760)
+-. ......++..+.++.+||.+|..+|++.+|..+|++++.+.
T Consensus 354 i~~-----------------------------------~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 354 IYL-----------------------------------DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHH-----------------------------------hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 310 11112445667889999999999999999999999999764
Q ss_pred -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 228 -------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-------GKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 228 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
+.....+..+|..|...+.+..|...|..+..+. |+....+.+|+.+|..+|+++.|+++...++.
T Consensus 399 ~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 399 ELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3345668889999999999999999999887653 34445788999999999999999999998885
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=137.57 Aligned_cols=267 Identities=18% Similarity=0.172 Sum_probs=179.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004339 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 132 (760)
Q Consensus 54 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 132 (760)
.|.-+.-..+.++|+..|..+++.+|...++.+.||.+|. .|..+.|+.+.+..+.. |+.......-++..||.-|..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 3444444556666666666666666666666666666666 56666666665554432 222111124567777888888
Q ss_pred cCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC
Q 004339 133 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 212 (760)
Q Consensus 133 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 212 (760)
.|-++.|...|..+... ..--..++..|..+|....+
T Consensus 120 aGl~DRAE~~f~~L~de-------------------------------------------~efa~~AlqqLl~IYQ~tre 156 (389)
T COG2956 120 AGLLDRAEDIFNQLVDE-------------------------------------------GEFAEGALQQLLNIYQATRE 156 (389)
T ss_pred hhhhhHHHHHHHHHhcc-------------------------------------------hhhhHHHHHHHHHHHHHhhH
Confidence 88888888888777652 11234567777788888888
Q ss_pred HHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004339 213 TVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287 (760)
Q Consensus 213 ~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 287 (760)
|.+|+..-++..++.+.. ...|..|+..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|..|++.
T Consensus 157 W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 157 WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH
Confidence 888888888777776643 344666777777777888888888888888888888888888888888888888888
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 288 ~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
++.+++.+|.-.+.+...|..+ |... |+....+.++.++....+. +.+...++.+.....-.+.|.
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~-Y~~l------------g~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYEC-YAQL------------GKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQ 302 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHH-HHHh------------CCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHH
Confidence 8888877776555666666666 7777 7777777777777776654 333444455545555566677
Q ss_pred HHHHHHHHHhc
Q 004339 368 DLFTQVQEAAS 378 (760)
Q Consensus 368 ~~~~~al~~~p 378 (760)
.++.+-+...|
T Consensus 303 ~~l~~Ql~r~P 313 (389)
T COG2956 303 AYLTRQLRRKP 313 (389)
T ss_pred HHHHHHHhhCC
Confidence 77766666666
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-14 Score=151.16 Aligned_cols=323 Identities=16% Similarity=0.068 Sum_probs=185.9
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
+|+++.++..+|..+...|++..|...+.++....|.+ .+..+..|.++...|+++.|+.++++++..+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56666666666666666666666666666666655533 344555666666666666666666666666665553332
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 87 DLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 87 ~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
. +..++..|.+..+...+.+++..
T Consensus 82 --------------------------------------~-~~~~~~~~~~~~~~~~~~~~l~~----------------- 105 (355)
T cd05804 82 --------------------------------------L-HLGAFGLGDFSGMRDHVARVLPL----------------- 105 (355)
T ss_pred --------------------------------------H-hHHHHHhcccccCchhHHHHHhc-----------------
Confidence 2 33333333333333333333220
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
.....|....++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 106 ----------------------~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 106 ----------------------WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred ----------------------cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 1125566777778888888889999999999999999889888888888999999999
Q ss_pred HHHHHHHHHHHHHHcCCChH----HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHH-HHHHHHHHHHHhhhhcC
Q 004339 247 LQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-SLGNWNYFAALRNEKRA 321 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~lg~~~y~~~~~~~~~~ 321 (760)
+++|+.++.+++...|..+. .+..++.++...|++++|+..|.+++...+........ ..+.. +.... ....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~~g~- 240 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL-LWRLE-LAGH- 240 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHH-HHHHH-hcCC-
Confidence 99999999988888764332 45678889999999999999998887654421222111 11111 11110 0000
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC----CCCCCchHHHHHHHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~la~~~~ 397 (760)
......++............ +.........+.++...|+...|...+..+...... ........+....|.+++
T Consensus 241 -~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 241 -VDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred -CChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 00001111111111110000 112222234566666667777777666665543321 000012444555666666
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 004339 398 AQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~ 415 (760)
..|++..|+..+..++..
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-14 Score=149.88 Aligned_cols=313 Identities=14% Similarity=0.017 Sum_probs=222.3
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhh
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
+|+++.++..+|.++. .+++..+...+.++....|... ...+..+..+.++...|+++.|+..+.+++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~-------- 71 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAGDLPKALALLEQLLD-------- 71 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 4666666666666555 4556666666666665555431 1246677788889999999999999999987
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCcHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI----HDTVAASVLYRLILFKYQDYVD 232 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~ 232 (760)
..|.+..++.. +..+... +....+...+......+|....
T Consensus 72 -----------------------------------~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (355)
T cd05804 72 -----------------------------------DYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY 115 (355)
T ss_pred -----------------------------------HCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence 44555555543 4444444 4444444444444456677888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC---hHHHHHHHHH
Q 004339 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD---SYATLSLGNW 309 (760)
Q Consensus 233 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~lg~~ 309 (760)
++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++.+++...|... ...+..++.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999876421 2345678888
Q ss_pred HHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHcCChHHHHHH--H-HHHHHHhcCCC
Q 004339 310 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAAN---GAGVVLAEKGQFDVSKDL--F-TQVQEAASGSV 381 (760)
Q Consensus 310 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~p~~~ 381 (760)
+... |+++.|+.+|++++...|. .....+ .+...+...|....+..+ + .......|.
T Consensus 196 -~~~~------------G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-- 260 (355)
T cd05804 196 -YLER------------GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-- 260 (355)
T ss_pred -HHHC------------CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc--
Confidence 8888 9999999999999877662 222221 223333345544444433 1 111111121
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC---CC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 382 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY---NT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 382 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
+.........+.++...|+...|...+..+...... .. ...+....+.+++..|++..|+..+..++.+.
T Consensus 261 -~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 261 -HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred -ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 123344457889999999999999999988775322 11 26777889999999999999999999999765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-13 Score=146.47 Aligned_cols=318 Identities=16% Similarity=0.190 Sum_probs=212.3
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
...++..+.++...|++++|+.++......-++...++-..|.++..+|++++|...|..+|..+|++...+..+..++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45678889999999999999999999988888899999999999999999999999999999999999999999999873
Q ss_pred -c-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 94 -S-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES-AHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 94 -~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
. .+...-...|.......|... +...+...+..-..|.. +..++...+..+.. +........+ -+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~------~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-slF~~lk~Ly-~d 155 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSD------APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-SLFSNLKPLY-KD 155 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcccc------chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHH-cC
Confidence 2 246777888888888777642 11122222222223332 33344444443310 0000000000 01
Q ss_pred hhhHHH-HHHhHHhhhhhhccCCCc------cCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 167 ASASML-QFKDMQLFHRFENDGNHV------ELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 167 ~~~~~~-~~~~~~~~~~l~~~~~~~------~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.....+ .-....+...+....... ..+|.. .++++.+|..|...|++++|+.++.++|...|..++.|+..|
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 111111 101111222222211111 112222 356677888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhh
Q 004339 239 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 318 (760)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~ 318 (760)
.++...|++.+|..+++.+..+++.+-.+....+..+++.|+.++|...+........+ ...-+..+-
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~-~~~~L~~mQ----------- 303 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD-PLSNLNDMQ----------- 303 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC-cccCHHHHH-----------
Confidence 88888888888888888888888888888888888888888888888888766544321 111111111
Q ss_pred hcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 319 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
..+.....|.+|.+.|++..|+..|..+.....
T Consensus 304 ---------------------------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 304 ---------------------------CMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred ---------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 123334467788888888888888888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-13 Score=128.20 Aligned_cols=373 Identities=14% Similarity=0.146 Sum_probs=248.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTG 98 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~ 98 (760)
....+++..+|..|+.++..-.+.+|.+...+..||.||+...+|..|..+|++.-.+.|......+..+..+. .+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 33445888899999999999999999999999999999999999999999999999999998888888888766 67888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
.|+......... |.. ...++-.-+.+.+..+++..+....++.-.
T Consensus 96 DALrV~~~~~D~-~~L----~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------------------------------ 140 (459)
T KOG4340|consen 96 DALRVAFLLLDN-PAL----HSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------------------------------ 140 (459)
T ss_pred HHHHHHHHhcCC-HHH----HHHHHHHHHHHhcccccCcchHHHHHhccC------------------------------
Confidence 888776655432 111 134444455566666666666666555321
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
.+.+....+.|.+.++.|+++.|++-|+.+++...-.+..-++++.++++.+++..|+.+...++
T Consensus 141 ---------------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 141 ---------------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ---------------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 24556677777788888888888888888887777777777778888888888888887776665
Q ss_pred HH----cCC----------------C---------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC-CCChHHHHHHHH
Q 004339 259 KV----NGK----------------Y---------PNALSMLGDLELKNDDWVKAKETFRAASDATD-GKDSYATLSLGN 308 (760)
Q Consensus 259 ~~----~p~----------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~ 308 (760)
.. +|. + ..++...+-++++.++++.|...+..+--... .-++..+.+++.
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 43 332 1 12455666777888888888776654432211 124555555554
Q ss_pred HHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC------
Q 004339 309 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF------ 382 (760)
Q Consensus 309 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------ 382 (760)
. -. .+++.....-+.-.+.++|--...+-++-.+|++..-|+-|..++-. +|..++
T Consensus 286 ~-n~-------------~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Y 347 (459)
T KOG4340|consen 286 M-NM-------------DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPY 347 (459)
T ss_pred h-cc-------------cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHH
Confidence 3 11 15566666666667777776666777777777777777766655432 110000
Q ss_pred -----------CCchHH-HHHH---------------HHHHHHcC-----CHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 383 -----------VQMPDV-WINL---------------AHVYFAQG-----NFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 383 -----------~~~~~~-~~~l---------------a~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
+.+|.. .-.| +.+..... ....|++.|+.++.++ ..++...++
T Consensus 348 ly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~Ak 422 (459)
T KOG4340|consen 348 LYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----LPVLMAQAK 422 (459)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 011110 0000 11111111 1334555566666643 557778888
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+|+...+|..+.+.|+..++...++.....|.|.+
T Consensus 423 iyW~~~Dy~~vEk~Fr~SvefC~ehd~WkLNvaHv 457 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVEFCNDHDVWKLNVAHV 457 (459)
T ss_pred hhccccccHHHHHHHHHHHhhhcccceeeeccccc
Confidence 99999999999999999998888887777777655
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-12 Score=129.39 Aligned_cols=409 Identities=16% Similarity=0.160 Sum_probs=261.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+..|+...+.++.+|+...-...|.++|..-|- +..+|-.........+-+.-++..|++.++++|....-++. .+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie--~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIE--YL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHH--HH
Confidence 456777888888999999999999999987774 45566666666667777788888888888888876443322 12
Q ss_pred HccCCHhHHHHHHHHHHHH------------------------HHhcCC----------------CCCHHHHHHHHHHHH
Q 004339 92 LISSDTGAALDAFKTARTL------------------------LKKAGE----------------EVPIEVLNNIGVIHF 131 (760)
Q Consensus 92 ~~~~~~~~A~~~~~~al~~------------------------~~~~~~----------------~~~~~~~~~la~~~~ 131 (760)
...++.++|...|...+.. +|+... .....+|..||..|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 2234555555544443311 111110 012567899999999
Q ss_pred HcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC
Q 004339 132 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 211 (760)
Q Consensus 132 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g 211 (760)
+.|.++.|..+|++++..-.......... .....|........+...............+-..++..-.-+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~if--------d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIF--------DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHH--------HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999999999987422111000000 0111111111111111000000011122233333333332222
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HcCCC-----hHHHHHHHHHHhhcCCHHHHH
Q 004339 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK-VNGKY-----PNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 212 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~ 285 (760)
....- +=.-++..+|+++..|.....+ ..|+..+-+..|..++. .+|.. ..+|..+|.+|...|+.+.|.
T Consensus 332 rr~~~--lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 332 RRPLL--LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred ccchH--HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 22211 1123456678888887776555 46777788888887775 35542 347888899999999999999
Q ss_pred HHHHHhhhcCCCC---ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC------------------
Q 004339 286 ETFRAASDATDGK---DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT------------------ 344 (760)
Q Consensus 286 ~~~~~al~~~~~~---~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------------ 344 (760)
.+|.+++...-.. ...+|...|.. -+.. .+++.|+.+.+.+...-.
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waem-Elrh------------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEM-ELRH------------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHH-HHhh------------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 9999888764221 23455555555 4444 788888888888765311
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.+..+|..++.+....|-++....+|.+++.+.- -.|.+..|.|..+....-+++|.+.|++.+.+|+-|.-.++
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLri-----aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 1344677788888889999999999999998875 67899999999999999999999999999999877777666
Q ss_pred HHHHHHH---HHHhccHHHHHHHHHHHHHhCCC
Q 004339 425 LLYLART---HYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 425 ~~~la~~---~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
|...-.. -+.--..+.|..+|++|+...|.
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 6533222 23344678899999999998883
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=133.33 Aligned_cols=387 Identities=16% Similarity=0.113 Sum_probs=249.6
Q ss_pred hhhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 3 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 3 a~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
+.+.+...|++..++.....++++.+.|+.|+...+.-......+ ...+..+.|.++++..++|+..+. ..++.+.
T Consensus 35 ~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~ 110 (652)
T KOG2376|consen 35 ANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD 110 (652)
T ss_pred HHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccch
Confidence 456667778888899999999999999999985444332211112 223688889999999999998888 4556666
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHH---------------------------HhcCCCCCHHHHHHHHHHHHHcC
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLL---------------------------KKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~---------------------------~~~~~~~~~~~~~~la~~~~~~g 134 (760)
......|+++. .++|++|+..|+..++-. |.. .....+.+++.|.++...|
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v-~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV-PEDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC-CcchHHHHHHHHHHHHhcc
Confidence 67777777655 789999999888764321 111 1224678999999999999
Q ss_pred CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCC-ccCCcchHHHHHHHHHHHHHcCCH
Q 004339 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH-VELPWNKVTVLFNLARLLEQIHDT 213 (760)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~p~~~~~~~~la~~~~~~g~~ 213 (760)
+|.+|++.+..++.+|... +..-... -........+...++.++..+|+.
T Consensus 190 ky~qA~elL~kA~~~~~e~-----------------------------l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREK-----------------------------LEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred cHHHHHHHHHHHHHHHHHh-----------------------------hcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999998765310 0000000 001112345788899999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHH----HHHHHH---------------------------------------------HHHc
Q 004339 214 VAASVLYRLILFKYQDYVDAY----LRLAAI---------------------------------------------AKAR 244 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~----~~la~~---------------------------------------------~~~~ 244 (760)
.+|..+|..++..+|.+.... .+|..+ .+..
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876543221 111111 0111
Q ss_pred CCHHHHHHHHHHHHHHcCCChH---HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcC
Q 004339 245 NNLQLSIELVNEALKVNGKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
+.-+.+.+. ...+-+..|. -.............+..|..++.......|.....+.+.++.+ .+..
T Consensus 321 nk~~q~r~~---~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl-~is~------- 389 (652)
T KOG2376|consen 321 NKMDQVREL---SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL-KISQ------- 389 (652)
T ss_pred hhHHHHHHH---HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH-HHhc-------
Confidence 111111111 1111112222 1112222222333577888888887777777556677777777 6666
Q ss_pred chHHhhcHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC--CCCchHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVI--------VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV--FVQMPDVWIN 391 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~ 391 (760)
|++..|+..+...+ ... ..+.+...+-.++...++-+-|..++..++....... .+..-..+..
T Consensus 390 -----gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 390 -----GNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred -----CCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 99999999998333 221 2344444555666777777778888888876543110 0123456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHH
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 443 (760)
++.+-.+.|+-.+|...|+..++. +|++..++..+..+|... +.+.|..
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 788888889999999999999995 788888888887776543 3444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-14 Score=139.56 Aligned_cols=189 Identities=16% Similarity=0.120 Sum_probs=149.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH--
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ-- 83 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 83 (760)
.++..+..++.+|..++..|+|+.|+..|++++..+|.++ .+++.+|.++...|+++.|+..|++++..+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566778899999999999999999999999999999875 68899999999999999999999999999998775
Q ss_pred -HHHHHHHHHc-c--------CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchh
Q 004339 84 -AFIDLGELLI-S--------SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 153 (760)
Q Consensus 84 -~~~~la~~~~-~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 153 (760)
+++.+|.++. . +++..|+..|.+++...|.+ ...+..+..+.. +..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~~~~--------------~~~----- 163 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-----EYAPDAKKRMDY--------------LRN----- 163 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-----hhHHHHHHHHHH--------------HHH-----
Confidence 6888888876 3 57888999999999888875 233221111100 000
Q ss_pred hhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---c
Q 004339 154 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---Y 230 (760)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~ 230 (760)
......+.+|.+|...|++..|+..|..++...|+ .
T Consensus 164 -----------------------------------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 164 -----------------------------------------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 01123457788888899999999999999988665 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
+.+++.+|.++...|++++|+.++..+...+|
T Consensus 203 ~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 203 EEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57888999999999999999988888776665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-13 Score=132.42 Aligned_cols=200 Identities=13% Similarity=0.105 Sum_probs=127.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH--
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV---DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-- 266 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 266 (760)
.++..+..++.+|..+...|+++.|+..|++++..+|.++ .+++.+|.++...|++++|+..|++++..+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4556778999999999999999999999999999998765 57899999999999999999999999999998776
Q ss_pred -HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 267 -ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 267 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+++.+|.++.... +.+ +... |++..|+..|++++..+|.
T Consensus 108 ~a~~~~g~~~~~~~---------------------------~~~-~~~~------------~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 108 YAYYLRGLSNYNQI---------------------------DRV-DRDQ------------TAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHHhc---------------------------ccc-cCCH------------HHHHHHHHHHHHHHHHCCC
Confidence 6788888876540 001 1112 4555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CCcHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NTDAQI 424 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~ 424 (760)
+..++..+..+.... . ........+|.+|+..|++.+|+..|..++..+++ |..+.+
T Consensus 148 ~~~~~~a~~~~~~~~--------------~--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a 205 (235)
T TIGR03302 148 SEYAPDAKKRMDYLR--------------N--------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA 205 (235)
T ss_pred ChhHHHHHHHHHHHH--------------H--------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence 544332221111100 0 00112234555555555555555555555555543 233555
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 425 LLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
++.+|.++..+|++++|..+++......|
T Consensus 206 ~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 206 LARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55555555555555555555555544443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=124.47 Aligned_cols=128 Identities=10% Similarity=0.075 Sum_probs=119.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..+|++++..+|++ +..+|.++...|++++|+.+|..++..+| .++.+|.++|.++...|++++|+..|.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46789999999875 55789999999999999999999999999 88999999999999999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+.. .|.++.+++.+|.++..+|++++|+..|.+++.+.|+++..+.+++.+...+.
T Consensus 85 l~l--~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 85 LML--DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 996 78899999999999999999999999999999999999999999998865543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=133.03 Aligned_cols=300 Identities=17% Similarity=0.158 Sum_probs=186.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 004339 55 GHIYVQLGQIEKAQELLRKAAKIDPRDA----QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGV 128 (760)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 128 (760)
|.-++++|++...+.+|+.+++....+. ..|..||.+|. .++|.+|+++...-+.+....++.. .+...-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3344455555555555555555544332 23444555554 4555555555444443332222111 2455677888
Q ss_pred HHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208 (760)
Q Consensus 129 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~ 208 (760)
.+...|.|++|+.++.+-+.+.. . +...-....++|++|.+|.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~ar------------------------------e-------LgDrv~e~RAlYNlgnvYh 146 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFAR------------------------------E-------LGDRVLESRALYNLGNVYH 146 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHH------------------------------H-------HhHHHhhhHHHhhhhhhhh
Confidence 88888999999888887765311 0 0011134568888888888
Q ss_pred HcCC--------------------HHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 209 QIHD--------------------TVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 209 ~~g~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
..|+ ++.|.++|..-+++... ...++-+||..|+-+|+|+.|+..-+.-+.+..
T Consensus 147 akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ 226 (639)
T KOG1130|consen 147 AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ 226 (639)
T ss_pred hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH
Confidence 7664 34555666655544321 234567788888999999999988777666543
Q ss_pred CC------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC-----CCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 263 KY------PNALSMLGDLELKNDDWVKAKETFRAASDAT-----DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 263 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
.. -.++.++|++|.-.|+++.|+++|+..+.+. ........+.||+. |... ..+.+
T Consensus 227 efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt-ytll------------~e~~k 293 (639)
T KOG1130|consen 227 EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT-YTLL------------KEVQK 293 (639)
T ss_pred HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH-HHHH------------HHHHH
Confidence 22 2378899999999999999999998876532 12245667888888 8887 88888
Q ss_pred HHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHH
Q 004339 332 AKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 332 A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|+.++.+-+.+.. ....+++.||..+...|..++|+.+....+++...... .....+..++.......|..+.
T Consensus 294 AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 294 AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 8888888665532 23457777788888888888887777776665421100 0123455566666666665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-10 Score=119.11 Aligned_cols=385 Identities=10% Similarity=0.131 Sum_probs=278.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHH-----HHHHHhcC-------------CHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL-----GHIYVQLG-------------QIEKAQELLR 72 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l-----a~~~~~~g-------------~~~~A~~~~~ 72 (760)
...|..||..|++.|.|+.|..+|++++..--. ...++-.. ..+...++ +.+-.+..|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 346888999999999999999999999875322 11111111 11111111 2333444555
Q ss_pred HHH------------hcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004339 73 KAA------------KIDPRDAQAFIDLGELLISSDTGAALDAFKTART-LLKKAGEEVPIEVLNNIGVIHFEKGEFESA 139 (760)
Q Consensus 73 ~al------------~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 139 (760)
.++ ..+|++...|.....++ .|+..+-+..|..|+. .+|......+..+|..+|.+|...|+.+.|
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 544 44777887777765544 5678888888888775 456654445678999999999999999999
Q ss_pred HHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 140 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 219 (760)
Q Consensus 140 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 219 (760)
..+|+++...+- ..-.+...+|...|..-....+++.|+.+
T Consensus 407 Rvifeka~~V~y---------------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 407 RVIFEKATKVPY---------------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHhhcCCc---------------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999987321 01123467899999999999999999999
Q ss_pred HHHHHHHcC------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCH
Q 004339 220 YRLILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 281 (760)
Q Consensus 220 ~~~~l~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 281 (760)
.+.+..... ....+|..++.+....|-++....+|++++.+.--.|.+..+.|.++....-+
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF 527 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence 999875321 12346777888888999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChH-HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHH
Q 004339 282 VKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL--YAANGAGVVLA 358 (760)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~-~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~ 358 (760)
+++.+.|++.+.+.+.+..+ .|...-.- +... . ....++.|..+|++++...|... ..+..+|.+-.
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtk-fi~r--y-------gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTK-FIKR--Y-------GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHH-HHHH--h-------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999988654332 33322211 2111 0 01578999999999999988422 24555666666
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
..|-...|+.+|+++-...+ ..-.+.+-.+|+..- -...-..+|++|+...++..-.......+..-.+
T Consensus 598 e~GLar~amsiyerat~~v~-------~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtk 670 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATSAVK-------EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETK 670 (835)
T ss_pred HhhHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhh
Confidence 88999999999999876543 222233333333211 1445678899999987666668888889999999
Q ss_pred hccHHHHHHHHHHHHHhCCCC
Q 004339 435 AEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~ 455 (760)
+|..+.|..+|.-+-++.|..
T Consensus 671 lGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCc
Confidence 999999999999998886543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-12 Score=143.54 Aligned_cols=266 Identities=11% Similarity=0.014 Sum_probs=187.4
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..+|.+..++..++..|...+++++|+.+++.++..+|+...+|+.+|.++++.+++..|... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 467888888899999888999999999999988998999989999999988888886666555 4444433322
Q ss_pred HHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 88 la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
++ .++.++...+...+.+ ..+++.+|.||-.+|++++|...|++++.
T Consensus 98 --------~~-~~ve~~~~~i~~~~~~-----k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------- 144 (906)
T PRK14720 98 --------KW-AIVEHICDKILLYGEN-----KLALRTLAEAYAKLNENKKLKGVWERLVK------------------- 144 (906)
T ss_pred --------ch-hHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHcCChHHHHHHHHHHHh-------------------
Confidence 33 4445555455545554 56888888888888888888888888887
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 247 (760)
.+|.++.++.++|..|... ++++|+.++.+++.. +...+++
T Consensus 145 ------------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~ 185 (906)
T PRK14720 145 ------------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQY 185 (906)
T ss_pred ------------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcc
Confidence 5678888888888888888 888888888888765 5566677
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
..+..+..+.+..+|.+...+..+-......-.+..+... +.-+-.. |... +
T Consensus 186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~---------------~~~l~~~-y~~~------------~ 237 (906)
T PRK14720 186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL---------------LEDLYEP-YKAL------------E 237 (906)
T ss_pred hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH---------------HHHHHHH-Hhhh------------h
Confidence 8888888888888887766544333222221112222221 2222223 4444 7
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------------CChHHHHHHHHHHHHHhcCC
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK--------------------GQFDVSKDLFTQVQEAASGS 380 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~al~~~p~~ 380 (760)
+|+.++.+++.++..+|.|..+...++.||... ..+..|+..|.+.+...+|+
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCC
Confidence 777888888888888888887777777777631 24577788888888777754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-11 Score=116.36 Aligned_cols=294 Identities=13% Similarity=0.064 Sum_probs=172.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 55 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
|..-+..|+|.+|.....+.-+..+.-..++..-+.+-. .|+++.|-.++.++-+..++. ...+....+.+....
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~----~l~v~ltrarlll~~ 166 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD----TLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc----hHHHHHHHHHHHHhC
Confidence 333344455555555555544444433333333333333 445555555555555442222 134445555555556
Q ss_pred CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCH
Q 004339 134 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 213 (760)
Q Consensus 134 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 213 (760)
|++..|.....+++. ..|.++.++....++|...|+|
T Consensus 167 ~d~~aA~~~v~~ll~-------------------------------------------~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 167 RDYPAARENVDQLLE-------------------------------------------MTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred CCchhHHHHHHHHHH-------------------------------------------hCcCChHHHHHHHHHHHHhccH
Confidence 666666665555554 3445555555556666666666
Q ss_pred HHHHHHHHHHHHHcCCcHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 214 VAASVLYRLILFKYQDYVDA--------YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
.....++.++-+..--+..- |..+-.-...-+..+.-..+.+..-..-.+++.+...++.-+...|.++.|.
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHH
Confidence 66555555554433211111 1111110111111111112333332333456777778888888888888888
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.....+++..-+.. ....++. ... ++...-++..++.++.+|+++..+..||.+|.+.+.|.+
T Consensus 284 ~~i~~~Lk~~~D~~--L~~~~~~---l~~------------~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 284 EIIEDALKRQWDPR--LCRLIPR---LRP------------GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHhccChh--HHHHHhh---cCC------------CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 88888887654322 1111111 112 677777888888888899999888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
|..+|+.++...| +...+..+|.++..+|+...|...++.++..+..
T Consensus 347 A~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 347 ASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 9999998888875 4777888899999999999999998888866533
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-11 Score=142.61 Aligned_cols=390 Identities=13% Similarity=0.058 Sum_probs=270.1
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHc
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~ 93 (760)
..+...+..+...|++..|+.++..+-.. +.-...+...+..+...|.+..+..++..+- .....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34556677788889999888766554211 1113445556777778888887777665431 011123334455566655
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcC---C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 94 -SSDTGAALDAFKTARTLLKKAG---E-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
.+++..|...+..+....+... . .....+...++.++...|+++.|..++..++...+.
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---------------- 484 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---------------- 484 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------
Confidence 7899999999998876644321 0 112455667888999999999999999998762110
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK 242 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~ 242 (760)
...+....++..+|.++...|+++.|..++.+++..... ...++..+|.++.
T Consensus 485 ----------------------~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 485 ----------------------TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 001112345678899999999999999999999865331 1345678899999
Q ss_pred HcCCHHHHHHHHHHHHHHcCC--------ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC----ChHHHHHHHHHH
Q 004339 243 ARNNLQLSIELVNEALKVNGK--------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGK----DSYATLSLGNWN 310 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~lg~~~ 310 (760)
..|++..|..++.+++..... ...++..+|.++...|+++.|...+..++...... ....+..++.+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~- 621 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI- 621 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH-
Confidence 999999999999999876321 12345678889999999999999999988753321 23344456666
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC---HHHHH----HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN---LYAAN----GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 383 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 383 (760)
+... |++..|...+..+..+.+.. ..... .....+...|+.+.|..++.......+....
T Consensus 622 ~~~~------------G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~- 688 (903)
T PRK04841 622 SLAR------------GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH- 688 (903)
T ss_pred HHHc------------CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch-
Confidence 6666 99999999999987753321 11111 1224445688999999887776542221100
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
.....+..+|.++...|++.+|+..|.+++........ ..++..+|.++...|+..+|...+.+|+.+......
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 11223578999999999999999999999986432222 567889999999999999999999999999865543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-12 Score=143.33 Aligned_cols=280 Identities=13% Similarity=0.116 Sum_probs=197.2
Q ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 191 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 191 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..+|.+..++..|+..+...+++++|+.++...+..+|+.+..|+.+|.++...+++..+..+ .++...+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-------- 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS-------- 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence 477889999999999999999999999999999999999999999999999999997776655 4444433
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHH
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 350 (760)
...+| .++.++...+...+. +.++++.+|.+ |-.. |+.++|...|+++++.+|+++.++
T Consensus 95 ------~~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 95 ------QNLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred ------cccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHH
Confidence 33445 444444444444444 66799999999 9999 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+++|..|... ++++|+.++.+|+...-.. .+.....+| ...|...-.+++.=..+.++.+.......-..++.-+=
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W--~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW--SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH--HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 9999999999 9999999999998764210 000011111 12222222333333344444433322222255555666
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH-HhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhc
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS-ASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 504 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~ 504 (760)
.+|...++|++++.+|+.++.++|.|..+++.++.||...= ...+-...-.+..+..--..+..|+.-|+.+..-
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f 306 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVF 306 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeee
Confidence 88999999999999999999999999999999999986321 1111111111122222334566777777766543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-11 Score=113.04 Aligned_cols=209 Identities=18% Similarity=0.067 Sum_probs=168.6
Q ss_pred CHhHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
+.++-++++...+...+.. ..+....++-.+..+....|+..-|..+++++..
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------------------------- 80 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD-------------------------- 80 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--------------------------
Confidence 5556666666665554443 1111234455556667778999999999988765
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
..|.+..+....|..+...|++++|+++|...+..+|.+..++.+...+...+|+.-+|+..+
T Consensus 81 -----------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 81 -----------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred -----------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 347788888889999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHH
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 334 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 334 (760)
...++.++.++++|..++.+|+..|+|.+|.-+++.++-+.|. .+..+..++.+ ++.... ..++.-|..
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~-~Yt~gg---------~eN~~~ark 212 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEV-LYTQGG---------AENLELARK 212 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHH-HHHHhh---------HHHHHHHHH
Confidence 9999999999999999999999999999999999999988887 77777888888 443311 157888999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 335 LYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 335 ~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
+|.++++++|.+..+++++..+..
T Consensus 213 yy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHhChHhHHHHHHHHHHHH
Confidence 999999999988888888766654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-12 Score=122.04 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=116.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH-HHcCC--HH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 403 (760)
+..++++..+++++..+|+++.+|..+|.+|...|+++.|+..|.+++.+.| +++.++..+|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999999 8899999999975 67787 59
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
+|...+++++.. +|.++.+++.+|.+++..|++++|+.+|++++.+.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999996 8888999999999999999999999999999999988754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=108.51 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++-.+..+.+..|+..-|..+++......|+ ...+...-|.. +-.. |++++|+++|...+.-+|
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~-lEa~------------~~~~~A~e~y~~lL~ddp 117 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAML-LEAT------------GNYKEAIEYYESLLEDDP 117 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHH-HHHh------------hchhhHHHHHHHHhccCc
Confidence 334444555555666666666666666666655 44443344444 4444 777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.+..++-....+...+|+.-+|+..+...++..+ .++++|..++.+|+..|+|.+|.-+|+.++-. .|.++..
T Consensus 118 t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-----~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~ 190 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-----NDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLY 190 (289)
T ss_pred chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHH
Confidence 7777777666677778888888888888888887 77888888888888888888888888888774 7777888
Q ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 425 LLYLARTHYEAE---QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 425 ~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+..+|.+++-+| ++.-|.++|.++++++|.+...+|.+.+|-+.+.
T Consensus 191 f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 191 FQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 888888888766 4556999999999999998889988888765554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=139.76 Aligned_cols=353 Identities=14% Similarity=0.045 Sum_probs=249.0
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------cHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---------DAQAFI 86 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~ 86 (760)
....|..+...|.+..+..++..+-. ....++.....++.++...|++.+|..++..+....+. ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44566677778888877776655311 11234556677888889999999999999988754221 123344
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
.++.++. .|++..|...+..++...+.........++..+|.++...|+++.|...+.+++.....
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~------------- 523 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ------------- 523 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-------------
Confidence 4566666 78999999999999986544211112345678899999999999999999999863210
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC--------CcHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRL 237 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l 237 (760)
.........++..+|.++...|+++.|..++.+++.... ....++..+
T Consensus 524 ------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 524 ------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred ------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 001112235678899999999999999999999887522 123345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC-hHHH-HH---HH
Q 004339 238 AAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYAT-LS---LG 307 (760)
Q Consensus 238 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~-~~---lg 307 (760)
|.++...|++++|...+.+++..... ...++..++.++...|++..|...+..+..+..... ...+ .. +.
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 88999999999999999999876332 234566789999999999999999999877533211 1111 11 11
Q ss_pred HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-C
Q 004339 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-F 382 (760)
Q Consensus 308 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~ 382 (760)
...+... |+.+.|..++.......+.... .+..+|.++...|++.+|...|.+++....... .
T Consensus 660 ~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 727 (903)
T PRK04841 660 LIYWQMT------------GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM 727 (903)
T ss_pred HHHHHHC------------CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence 1112233 8888888888776543322222 256789999999999999999999998753211 1
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 383 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 383 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
.....++..+|.++...|+..+|...+.+++..+..
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 133567889999999999999999999999998643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-13 Score=119.93 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=108.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|++ ++.+|.++...|++++|+.+|.+++..+|.++.+|+.+|.++...|++.+|+..|.+++.++|.++.+
T Consensus 18 ~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a 94 (144)
T PRK15359 18 QLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP 94 (144)
T ss_pred HHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 456677774 66789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
++.+|.++. .|++.+|+..|.+++.+.|.+ +..+.++|.+....
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-----~~~~~~~~~~~~~l 139 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-----ASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHH
Confidence 999999988 789999999999999999987 78887777766543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-13 Score=130.58 Aligned_cols=273 Identities=14% Similarity=0.046 Sum_probs=201.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
-|.-+++.|++...+.+|+.+++.+.. .-.....+|..||.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTe---------------------------------------Dl~tLSAIYsQLGN 63 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTE---------------------------------------DLSTLSAIYSQLGN 63 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcch---------------------------------------HHHHHHHHHHHhcc
Confidence 367788999999999999999985420 11123457889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CChHHHHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG------KYPNALSMLGD 273 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~ 273 (760)
+|+.+++|.+|+++-..-+.+. -....+.-+||.++...|.|++|+.++.+-+.+.. ....+++++|.
T Consensus 64 AyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgn 143 (639)
T KOG1130|consen 64 AYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGN 143 (639)
T ss_pred hhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhh
Confidence 9999999999998765433221 23344567899999999999999999888776542 23458999999
Q ss_pred HHhhcCC--------------------HHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 274 LELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 274 ~~~~~g~--------------------~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|...|. +..|.++|..-+++... ....++-+||+. |+.. |+
T Consensus 144 vYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNT-yYlL------------Gd 210 (639)
T KOG1130|consen 144 VYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNT-YYLL------------GD 210 (639)
T ss_pred hhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCce-eeee------------cc
Confidence 9987764 23455555554443221 023455678888 8777 99
Q ss_pred HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcC
Q 004339 329 LEKAKELYTRVIVQHTS------NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~la~~~~~~g 400 (760)
|+.|+.+-+.-+.+... .-.++.++|.++.-.|+++.|+++|+..+.+.- +... ..+...+.||..|.-..
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~-vEAQscYSLgNtytll~ 289 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT-VEAQSCYSLGNTYTLLK 289 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh-HHHHHHHHhhhHHHHHH
Confidence 99999988877665432 234788999999999999999999998776542 1100 23567889999999999
Q ss_pred CHHHHHHHHHHHHhhhcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 401 NFALAMKMYQNCLRKFYY----NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.+..||.++.+-+.+... .....+++.||.+|-.+|...+|+.+.++.+++
T Consensus 290 e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 290 EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999987776422 233778889999999999999999888887765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-09 Score=106.78 Aligned_cols=303 Identities=16% Similarity=0.141 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
....+-|..-+.-|+|.+|.....+.-+ ..+.....+
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae-------------------------------------------~~e~p~l~~ 121 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAE-------------------------------------------HGEQPVLAY 121 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhh-------------------------------------------cCcchHHHH
Confidence 3444456666678999999999988755 233344566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
..-+.+-...|+++.|-.++.++-+..+ +...+.+.++.++...|++..|...+..++...|.++.++.....+|...|
T Consensus 122 l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 122 LLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc
Confidence 6677888899999999999999998843 456778899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+|.....++.++-+..--.+.. +..+-+..+...+ ....+. +..+.-..+++..-..--+++.....++.-+..
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e-~~~le~~a~~glL-~q~~~~----~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEE-AARLEQQAWEGLL-QQARDD----NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHH-HHHHHHHHHHHHH-HHHhcc----ccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 9999999998887754332222 1122222022111 111111 122222334444433344567788888999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
+|..++|..+...+++.. -++.....++ ...-+++..=++..++.++. .|.++.+++.||..|++.+.|.
T Consensus 276 l~~~~~A~~~i~~~Lk~~------~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQ------WDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred cCChHHHHHHHHHHHHhc------cChhHHHHHh--hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHH
Confidence 999999999999999876 3455222222 34557888888888888885 6777899999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHH
Q 004339 440 DCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 495 (760)
Q Consensus 440 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~ 495 (760)
+|..+|+.|+...|+. ..+..+|.++..+| +...|.....+++
T Consensus 346 kA~~~leaAl~~~~s~-~~~~~la~~~~~~g------------~~~~A~~~r~e~L 388 (400)
T COG3071 346 KASEALEAALKLRPSA-SDYAELADALDQLG------------EPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhcCCCh-hhHHHHHHHHHHcC------------ChHHHHHHHHHHH
Confidence 9999999999888754 45666777777766 5555666666666
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=130.82 Aligned_cols=236 Identities=17% Similarity=0.115 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
......++.++...|-...|+..|++. ..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------------------------------------------------em 426 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------------------------------------------------EM 426 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------------------------------------------------HH
Confidence 345566777777788777777777654 35
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
|-....||...|+..+|..+..+-++ .|..+..|..+|.+....--|++|.++.+.. +..+...+|......+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence 55667777777877777777777777 5666677777777766665556665555443 3346667777777777
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+|.++..+|+..+.++|- ....|+.+|.+ +.+. +++..|..+|..++.+.|++..+|++++..|..
T Consensus 500 ~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred hHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 888888888888888776 77778888887 7777 788888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 432 (760)
.|+-.+|...+..+++.+- .+..+|.|.-.+....|.+++|++.|.+.+.......+..++..+....
T Consensus 566 ~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 8888888888888887764 6677788888888888888888888888777644444555555444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-10 Score=106.64 Aligned_cols=186 Identities=14% Similarity=0.106 Sum_probs=157.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 004339 59 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 137 (760)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 137 (760)
.+-.+|..|++++..-.+.+|.+...+..||.||. ..+|..|..+|.+.-.+.|.. ....+..+..++..+.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-----~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-----EQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHhcccH
Confidence 56678999999999999999999999999999998 679999999999999999986 677778899999999999
Q ss_pred HHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHH
Q 004339 138 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 217 (760)
Q Consensus 138 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 217 (760)
.|+.+...+... +.-....+..-+-+.+..+++..+.
T Consensus 96 DALrV~~~~~D~-------------------------------------------~~L~~~~lqLqaAIkYse~Dl~g~r 132 (459)
T KOG4340|consen 96 DALRVAFLLLDN-------------------------------------------PALHSRVLQLQAAIKYSEGDLPGSR 132 (459)
T ss_pred HHHHHHHHhcCC-------------------------------------------HHHHHHHHHHHHHHhcccccCcchH
Confidence 999998877541 1112344555566777778888877
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 218 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 218 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
.+.++.- ..+.....++.|.+.++.|+++.|++-|+.+++...-++.+-+.++.+++..+++..|+.+...++..
T Consensus 133 sLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 133 SLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 7666532 12577889999999999999999999999999999999999999999999999999999999888774
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-11 Score=114.21 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcH
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 329 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 329 (760)
+...+-.....+|.+..+ ..++..+...|+-+.+..+..++....+. +...+..+|.. .+.. |++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~-~~~~------------g~~ 116 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKN-QIRN------------GNF 116 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHH-HHHh------------cch
Confidence 555555666677888888 78888888888888888888777766665 77777667777 7777 889
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 330 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 330 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
..|+..+.++....|++..+|+.+|.+|.+.|+++.|...|.+++++.| ..+.+..|+|..|+-.|++..|..++
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-----~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-----CCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 77888999999999999999999998
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
..+... .+.+..+..+|+.+....|++..|..+..+-
T Consensus 192 l~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 192 LPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 888873 4557888889999999999998888776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-11 Score=125.09 Aligned_cols=223 Identities=19% Similarity=0.206 Sum_probs=195.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|........+|..++..|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334556778999999999999999999985 5677889999999999999999999998 6778888888888
Q ss_pred HHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 91 LLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 91 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
+...- .+|+++..+.... ...+...+|...+..++|.++..+|+..+.
T Consensus 466 v~~d~------s~yEkawElsn~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~---------------------- 513 (777)
T KOG1128|consen 466 VLHDP------SLYEKAWELSNYI----SARAQRSLALLILSNKDFSEADKHLERSLE---------------------- 513 (777)
T ss_pred hccCh------HHHHHHHHHhhhh----hHHHHHhhccccccchhHHHHHHHHHHHhh----------------------
Confidence 76632 3455555544432 255667788888889999999999999988
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHH
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 250 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 250 (760)
.+|.....||.+|.+..+.+++..|...|..++...|++..+|.+++..|...++-.+|
T Consensus 514 ---------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 514 ---------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred ---------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHH
Confidence 66788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 251 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
...+.++++.+-.++.+|-+...+....|.+++|+..|.+.+.+.
T Consensus 573 ~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 573 FRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998864
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-11 Score=115.39 Aligned_cols=153 Identities=12% Similarity=0.131 Sum_probs=112.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCH
Q 004339 202 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 281 (760)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 281 (760)
.-+..|+..|++.......+... +|.. -+...++.++++..+.+++..+|+++..|..+|.+|...|++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 34556778888877655443221 1211 111256667888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 282 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+.|+..|.+++.+.|. ++..+..+|.+.|+.. |+ +.+|..++++++..+|+++.+++.+|.++..
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~------------g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQA------------GQHMTPQTREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc------------CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 8888888888888877 7777777777523555 55 4788888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 004339 360 KGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p 378 (760)
.|++++|+.+|+++++..|
T Consensus 157 ~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 157 QADYAQAIELWQKVLDLNS 175 (198)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888777
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=109.96 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=112.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 334 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 334 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
..|.+++..+|.+..+.+.+|.++...|++.+|+..|+.++...| .++.++..+|.++..+|++++|+.+|++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
.. .|.++.+++.+|.+|...|+++.|+.+|++++++.|++....
T Consensus 79 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 AL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 96 678899999999999999999999999999999999886644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-11 Score=110.10 Aligned_cols=179 Identities=19% Similarity=0.189 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 216 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 216 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
+...+-.....+|.+..+ ..++..+...|+-+.++.+..++...+|.+..++..+|...+..|++..|+..|.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555556666678999998 9999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 296 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 296 ~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
|+ ++.+|..+|.+ |.+. |+++.|...|.+++++.|+.+.+++++|..|.-.|++..|..++..+..
T Consensus 131 p~-d~~~~~~lgaa-ldq~------------Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 131 PT-DWEAWNLLGAA-LDQL------------GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred CC-ChhhhhHHHHH-HHHc------------cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98 99999999999 9999 9999999999999999999999999999999999999999999999998
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
..+ .+..+..+++.+...+|++..|..+-.+-+.
T Consensus 197 ~~~-----ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 197 SPA-----ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred CCC-----CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 776 7889999999999999999999887665444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=121.07 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=177.9
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCChHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 272 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 272 (760)
......+.+.+++..+|++...+.-+.. ..+....+...++..+...+.-+.++..+...+... +.++.+....|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4566788899999999998876654433 223344556666666655556666766665554332 23455677778
Q ss_pred HHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHH
Q 004339 273 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 352 (760)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 352 (760)
.++...|+++.|+..+... ...........+ |+.. ++++.|...++.+.+.+.+...+...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi-~L~~------------~R~dlA~k~l~~~~~~~eD~~l~qLa 170 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQI-LLKM------------NRPDLAEKELKNMQQIDEDSILTQLA 170 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH-HHHT------------T-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 8899999999999888754 255555556666 7777 99999999999999998887777777
Q ss_pred HHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 353 AGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 353 la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
.+++....| .+.+|..+|+.+....| .++.++..+|.+++.+|+|++|...+..++.. +|.++.++.+++.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~-----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv 243 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFG-----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHH
Confidence 777777766 69999999999876655 67899999999999999999999999999985 7888999999999
Q ss_pred HHHHhccH-HHHHHHHHHHHHhCCCChhHH
Q 004339 431 THYEAEQW-QDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 431 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 459 (760)
+...+|+. +.+.+++.+....+|+++.+.
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999998 667788888888999887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-10 Score=124.05 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=94.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
..|..+.++++||.+....|.+++|..++..++...|++..++..++.++.+.+++++|+..+++++...|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 349 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 349 (760)
|.++...|++++|+.+|++++...|. ...+++.+|.+ +... |+.+.|...|++++.....-...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~-l~~~------------G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQS-LTRR------------GALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhhCcchHH
Confidence 66666666666666666666664443 56666666666 5555 66666666666666655443333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-11 Score=118.59 Aligned_cols=258 Identities=13% Similarity=0.117 Sum_probs=154.4
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 85 FIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 85 ~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
++.+-..|..|+|..++..+. .....+.. .......+.++|..+|++...+.-+...
T Consensus 5 Lf~vrn~fy~G~Y~~~i~e~~-~~~~~~~~----~~e~~~~~~Rs~iAlg~~~~vl~ei~~~------------------ 61 (290)
T PF04733_consen 5 LFTVRNQFYLGNYQQCINEAS-LKSFSPEN----KLERDFYQYRSYIALGQYDSVLSEIKKS------------------ 61 (290)
T ss_dssp THHHHHHHCTT-HHHHCHHHH-CHTSTCHH----HHHHHHHHHHHHHHTT-HHHHHHHS-TT------------------
T ss_pred HHHHHHHHHhhhHHHHHHHhh-ccCCCchh----HHHHHHHHHHHHHHcCChhHHHHHhccC------------------
Confidence 344445566777777776555 22222221 2456667777788888776555433211
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAK 242 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~ 242 (760)
. +....+...++..+...+..+.++..+...+... +.+....+..|.++.
T Consensus 62 ---------------------------~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 62 ---------------------------S-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp ---------------------------S-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred ---------------------------C-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 1 1123344555555544455555655555444222 134445556666777
Q ss_pred HcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 243 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
..|++++|+.++... .+.++......+|+..++++.|.+.++.+...... . ++..++.. |.......
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~--~l~qLa~a-wv~l~~g~---- 180 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED-S--ILTQLAEA-WVNLATGG---- 180 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-H--HHHHHHHH-HHHHHHTT----
T ss_pred HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-H--HHHHHHHH-HHHHHhCc----
Confidence 778888777776543 45677777777888888888888888777665433 2 23333333 22221100
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
..+..|.-+|+......|.++..++++|.++..+|+|++|...+..++..+| .++.++.+++.+...+|+.
T Consensus 181 ----e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-----~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 181 ----EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-----NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp ----TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-----CHHHHHHHHHHHHHHTT-T
T ss_pred ----hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhCCC
Confidence 3578888888887777777888888888888888888888888888887777 7788888888888888877
Q ss_pred -HHHHHHHHHHHhh
Q 004339 403 -ALAMKMYQNCLRK 415 (760)
Q Consensus 403 -~~A~~~~~~al~~ 415 (760)
+.+.+++.+....
T Consensus 252 ~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 252 TEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHCHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 4445555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=106.08 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=101.0
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|.++.+.+.+|..++..|++.+|+..|++++..+|.++.++..+|.++...|++..|+.+|.+++..+|.++..
T Consensus 8 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 87 (135)
T TIGR02552 8 DLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRP 87 (135)
T ss_pred HHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 56778898888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
++.+|.++. .|++..|+..|+.++.+.|..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 999999988 789999999999999998875
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.8e-11 Score=112.78 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+-.-|.-+...++|.+|+..|.+||.++| .++..|.+.|.+|.++|.|+.|++.++.++.. +|....+|..||
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P-----~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG 156 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDP-----TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 44557778888999999999999999999 88999999999999999999999999999995 788899999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+|+.+|++.+|+..|++||+++|++...+-+|..+-+++.
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888765554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-11 Score=103.74 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=72.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
++.....|.+|..++..|++++|...|+-+...+|.++..|++||.|+..+|+|.+|+..|.+++.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHc-cCCHhHHHHHHHHHHHHH
Q 004339 91 LLI-SSDTGAALDAFKTARTLL 111 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~ 111 (760)
|+. .|+...|...|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 766 567777777777766655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-10 Score=124.38 Aligned_cols=159 Identities=7% Similarity=-0.043 Sum_probs=144.4
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+....+...+-+++.+..... ..+.++.+||.+....|.+++|..++..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------------- 114 (694)
T PRK15179 62 HAAVHKPAAALPELLDYVRRYP--HTELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------------- 114 (694)
T ss_pred hhhhcchHhhHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------------------------
Confidence 4456666666666666655542 2378999999999999999999999999998
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
..|++..++.+++.++.+.+++++|+..+++++...|++..+++.+|.++...|++++|+.+
T Consensus 115 ------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 115 ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred ------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
|++++..+|+++.++..+|.++...|+.++|...|.+++.....
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999998654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=112.03 Aligned_cols=118 Identities=22% Similarity=0.272 Sum_probs=106.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
..+-.-|.-++..++|.+|+..|.+||.++|.++..|.+.|.+|.++|.+..|++.++.++.++|.+..+|..||.+|.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 3466778889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 137 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 137 (760)
+|++.+|+..|++++.++|.+ ...+.+|..+-..++...
T Consensus 162 ~gk~~~A~~aykKaLeldP~N-----e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN-----ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc-----HHHHHHHHHHHHHhcCCC
Confidence 889999999999999999997 666677766665555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-10 Score=98.78 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=46.6
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|+++.|..+|+-+..++|.+...|++||.|+..+|+|.+|+..|..++.+.| ++|..++++|.|++..|+.+.|.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----DAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555555555555555555555555555555555555555 45555555555555555555555
Q ss_pred HHHHHHHhhh
Q 004339 407 KMYQNCLRKF 416 (760)
Q Consensus 407 ~~~~~al~~~ 416 (760)
..|+.++..+
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=99.16 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=139.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY---LRLAAIAKARNNLQLSIELVNEALKVNGKYPN---AL 268 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 268 (760)
..+..++..|..+...|+|+.|+..|+.++..+|....+. +.+|.+++..+++..|+..+++++..+|+++. ++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3567788899999999999999999999999998776554 88899999999999999999999999887754 66
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
+.+|.++...+. ..+.....+... .... .....|+..|+..+...|++..
T Consensus 110 Y~~g~~~~~~~~-----~~~~~~~~~~~~-------------~rD~------------~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 110 YMRGLTNMALDD-----SALQGFFGVDRS-------------DRDP------------QHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHHHhhhhcch-----hhhhhccCCCcc-------------ccCH------------HHHHHHHHHHHHHHHHCcCChh
Confidence 677766543321 111111111110 0111 4456777888888888887755
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 427 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 427 (760)
+ .+|...+..+.. ....--+.+|..|++.|.|..|+.-++.++..+|..+. .++++.
T Consensus 160 a--------------~~A~~rl~~l~~--------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 160 T--------------TDATKRLVFLKD--------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred H--------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 2 222222222211 12333457788888888888888888888888766554 788888
Q ss_pred HHHHHHHhccHHHHHHHHHH
Q 004339 428 LARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~ 447 (760)
++.+|..+|..+.|..+...
T Consensus 218 l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 218 MENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCChHHHHHHHHH
Confidence 88888888888888776654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-08 Score=101.79 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 004339 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 307 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg 307 (760)
|....+++..+..++..|.++.|+..+..++...|+|+..+...+.+++..++..+|.+.+++++...|. .....+++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 5566666666767777777777777777766667776666666666666666666666666666666665 356666666
Q ss_pred HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH
Q 004339 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 387 (760)
Q Consensus 308 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 387 (760)
+. |+.. |++.+|+..++..+..+|+++..|..||..|..+|+.. .
T Consensus 382 ~a-ll~~------------g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~----------------------~ 426 (484)
T COG4783 382 QA-LLKG------------GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA----------------------E 426 (484)
T ss_pred HH-HHhc------------CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH----------------------H
Confidence 66 6666 66666666666666666666666666666666666433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+....|..|+..|++++|+..+..+.+.
T Consensus 427 a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 427 ALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3334455555566666666666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-09 Score=107.70 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=119.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHH
Q 004339 44 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEV 122 (760)
Q Consensus 44 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 122 (760)
.|....+++..+..++..|+++.|+..+..++...|+|+..+...+.++. .++..+|.+.+++++.+.|.. ..+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-----~~l 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-----PLL 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----cHH
Confidence 36777788888888888888888888888888888888888888888877 678888888888888888875 677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
+.++|.+|+..|++.+|+..+...+. .+|.++..|..
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~-------------------------------------------~~p~dp~~w~~ 413 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLF-------------------------------------------NDPEDPNGWDL 413 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh-------------------------------------------cCCCCchHHHH
Confidence 88888888888888888888887765 56778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
||..|..+|+..+| ....+..|...|++++|+..+..+.+..
T Consensus 414 LAqay~~~g~~~~a-----------------~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 414 LAQAYAELGNRAEA-----------------LLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhCchHHH-----------------HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 88888888875554 3445566667777777777777777665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=113.26 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+...|..++..|+|..|+.+|.+++...| .++.+|+++|.+|..+|++++|+..+++++.+ .|.++.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P-----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP-----NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 44568888899999999999999999999 88999999999999999999999999999997 677899999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+|+.+|+++.|+.+|++++.++|+++.+...++.|...+.
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888866553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-08 Score=96.62 Aligned_cols=188 Identities=20% Similarity=0.223 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 269 (760)
.+..++..|..++..|+|.+|+..|+.++...|. ...+.+.+|.+++..|++..|+..++..+..+|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4566777777777777777777777777777664 3456777777777777777777777777777776543 555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 349 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 349 (760)
.+|.+++.... ..+ . . .... +....|+..|+..+...|++..+
T Consensus 84 ~~g~~~~~~~~-----~~~-------~------------~-~~D~------------~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 84 MLGLSYYKQIP-----GIL-------R------------S-DRDQ------------TSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHH-----HHH--------------------T-T---------------HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHHhCc-----cch-------h------------c-ccCh------------HHHHHHHHHHHHHHHHCcCchHH
Confidence 55554433210 000 0 0 1111 67788999999999999987654
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 428 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 428 (760)
- +|...+..+... ...--+.+|..|+..|.|..|+..|+.++..+|+++. ..++..+
T Consensus 127 ~--------------~A~~~l~~l~~~--------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 127 E--------------EAKKRLAELRNR--------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp H--------------HHHHHHHHHHHH--------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 2 233323222221 2344467899999999999999999999998766655 6888999
Q ss_pred HHHHHHhccHHHHH
Q 004339 429 ARTHYEAEQWQDCK 442 (760)
Q Consensus 429 a~~~~~~g~~~~A~ 442 (760)
+.+|.++|....|.
T Consensus 185 ~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 185 AEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHTT-HHHHH
T ss_pred HHHHHHhCChHHHH
Confidence 99999999988544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=100.66 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=138.9
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET---LKALGHIYVQLGQIEKAQELLRKAAKIDPRD---AQAFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 86 (760)
.+..+|..|..++..|+|+.|+..|+.++...|..+.+ .+.+|.+|++.+++..|+..|++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56678999999999999999999999999999998654 5899999999999999999999999999876 45678
Q ss_pred HHHHHHc-cC---------------C---HhHHHHHHHHHHHHHHhcCCCC------------CHHHHHHHHHHHHHcCC
Q 004339 87 DLGELLI-SS---------------D---TGAALDAFKTARTLLKKAGEEV------------PIEVLNNIGVIHFEKGE 135 (760)
Q Consensus 87 ~la~~~~-~~---------------~---~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~la~~~~~~g~ 135 (760)
.+|.++. .+ + ...|+..|+..+...|++.-.. ...--+.+|..|++.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 8887642 11 2 3468899999999988763110 11222456888999999
Q ss_pred HHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHH
Q 004339 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 215 (760)
Q Consensus 136 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 215 (760)
|..|+.-|+.++...| ..|....+++.++..|..+|..+.
T Consensus 191 y~AA~~r~~~v~~~Yp----------------------------------------~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 191 YVAVVNRVEQMLRDYP----------------------------------------DTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred hHHHHHHHHHHHHHCC----------------------------------------CCchHHHHHHHHHHHHHHcCChHH
Confidence 9999999999998554 455677899999999999999999
Q ss_pred HHHHHHHH
Q 004339 216 ASVLYRLI 223 (760)
Q Consensus 216 A~~~~~~~ 223 (760)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 98876554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=113.39 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=105.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+...|..++..|+|..|+.+|.+++..+|.++.+++.+|.+|..+|++..|+..+.+++.++|.++.+++.+|.++. .|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
++..|+..|++++.+.|.+ ..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~-----~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGD-----SRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHH
Confidence 9999999999999999987 77777777775555
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-08 Score=95.11 Aligned_cols=173 Identities=21% Similarity=0.235 Sum_probs=115.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA---QAFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 86 (760)
.+..+|..|..++..|+|.+|+..|+.++...|.. +.+++.+|.+++..|++..|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46688999999999999999999999999998875 68899999999999999999999999999998864 4666
Q ss_pred HHHHHHc-cC-----------CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh
Q 004339 87 DLGELLI-SS-----------DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 154 (760)
Q Consensus 87 ~la~~~~-~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 154 (760)
.+|.++. .. ....|+..|+..+...|++. -...|...+..+-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-------------------y~~~A~~~l~~l~------- 137 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-------------------YAEEAKKRLAELR------- 137 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-------------------THHHHHHHHHHHH-------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-------------------HHHHHHHHHHHHH-------
Confidence 6666643 10 12344444444444444431 1111111111111
Q ss_pred hhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---
Q 004339 155 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV--- 231 (760)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--- 231 (760)
.....--+.+|..|.+.|.|..|+..|+.+++..|+..
T Consensus 138 ---------------------------------------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~ 178 (203)
T PF13525_consen 138 ---------------------------------------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAE 178 (203)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHH
Confidence 01223445678888888888888888888888888764
Q ss_pred HHHHHHHHHHHHcCCHHHH
Q 004339 232 DAYLRLAAIAKARNNLQLS 250 (760)
Q Consensus 232 ~~~~~la~~~~~~g~~~~A 250 (760)
.++..++.+|..+|....|
T Consensus 179 ~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 179 EALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHH
Confidence 4567777778888877643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-07 Score=95.85 Aligned_cols=221 Identities=17% Similarity=0.169 Sum_probs=138.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHH--------HHH---HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEK--------VLE---IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~--------al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+|-++|.++.+..+.+-|.-++-. +++ .+|+ +.-...|.+...+|.+++|..+|.+.-+.+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D------ 830 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD------ 830 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 577777777777766666555432 122 1333 233345666677788888888887765422
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
.|-.+|. .|.+++|++..+.--.+. .-..|++.|..+...++...|+.+|+++-.-.
T Consensus 831 --LlNKlyQs~g~w~eA~eiAE~~DRiH-------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha------------- 888 (1416)
T KOG3617|consen 831 --LLNKLYQSQGMWSEAFEIAETKDRIH-------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHA------------- 888 (1416)
T ss_pred --HHHHHHHhcccHHHHHHHHhhcccee-------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChH-------------
Confidence 2334454 566666665544321111 24678899999999999999999999874310
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCcc---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVE---LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 240 (760)
...++-+..+...++ ....+...|.+.|..+...|+.+.|+.+|..+-. |+.+..+
T Consensus 889 -------------fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI 947 (1416)
T KOG3617|consen 889 -------------FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRI 947 (1416)
T ss_pred -------------HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheee
Confidence 000011111000000 1123457888999999999999999999987643 5666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 004339 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 292 (760)
Q Consensus 241 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (760)
..-+|+.++|-.+.++ ..+..+.+.+|..|...|++.+|+.+|.++-
T Consensus 948 ~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred EeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777777777655433 3456677777777777777777777776553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-06 Score=92.74 Aligned_cols=333 Identities=18% Similarity=0.145 Sum_probs=188.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
-...|...+..|-.++|..+|.+.-+ +-.|-.+|...|.+++|.++.+.-=+++ -...|++.+.-+. .+
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhc
Confidence 45667788899999999999998754 3456678888999999988776533332 2345777777776 77
Q ss_pred CHhHHHHHHHHHH----------HHHHhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 96 DTGAALDAFKTAR----------TLLKKAG-----EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 96 ~~~~A~~~~~~al----------~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
+...|+++|+++- .-+|..- ......+|...|..+...|..+.|+.+|..+-.... ......
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs---~VrI~C 949 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFS---MVRIKC 949 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhh---heeeEe
Confidence 9999999998742 1122110 111357788889999999999999999998865211 000000
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------CCcHHHH
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY------QDYVDAY 234 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~ 234 (760)
...-+.. ..+ +.....+..+.|.+|+.|...|++.+|+..|.++-... ..+ +..
T Consensus 950 ~qGk~~k------------Aa~-------iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~ 1009 (1416)
T KOG3617|consen 950 IQGKTDK------------AAR-------IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMK 1009 (1416)
T ss_pred eccCchH------------HHH-------HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHH
Confidence 0000000 000 11234566788999999999999999999888765322 100 011
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHH----------hhhcCCCCChHH
Q 004339 235 LRLAAIAKARNN--LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA----------ASDATDGKDSYA 302 (760)
Q Consensus 235 ~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------al~~~~~~~~~~ 302 (760)
-.|+.+....+. .-.|..+|+..- .....-..+|.+.|.+.+|++..-. +-.+.+..++..
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 122222222222 222333333221 0111122334445555555543221 112455667777
Q ss_pred HHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC--
Q 004339 303 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-- 380 (760)
Q Consensus 303 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 380 (760)
+..-+.+ +... .+|++|..++-.+-... -|.-++...+..-..+.-+ . ..|..
T Consensus 1083 l~RcadF-F~~~------------~qyekAV~lL~~ar~~~---------~AlqlC~~~nv~vtee~aE-~--mTp~Kd~ 1137 (1416)
T KOG3617|consen 1083 LRRCADF-FENN------------QQYEKAVNLLCLAREFS---------GALQLCKNRNVRVTEEFAE-L--MTPTKDD 1137 (1416)
T ss_pred HHHHHHH-HHhH------------HHHHHHHHHHHHHHHHH---------HHHHHHhcCCCchhHHHHH-h--cCcCcCC
Confidence 7777777 7666 77888877765543221 1111122222211111111 1 12211
Q ss_pred CCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 381 VFV--QMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 381 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
.++ ....++..+|.++.++|.|..|-+-|.+|-.
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 111 1245778889999999999988888877644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.6e-08 Score=93.56 Aligned_cols=285 Identities=16% Similarity=0.114 Sum_probs=178.6
Q ss_pred HccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHH
Q 004339 92 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 171 (760)
Q Consensus 92 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 171 (760)
|...++..|+..|.+.+....+.- .....+-.+..++..+|.|.+++.+--..+....
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~--~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~-------------------- 74 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLM--GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR-------------------- 74 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHH--HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH--------------------
Confidence 335577777777777776554420 0123444556667777877777665544333100
Q ss_pred HHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCC
Q 004339 172 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNN 246 (760)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~ 246 (760)
.. +.......++.++++.+...-++.+++.+-...+.+.... ..+...++..+..++.
T Consensus 75 ----------~~-------~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~ 137 (518)
T KOG1941|consen 75 ----------EL-------EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV 137 (518)
T ss_pred ----------HH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH
Confidence 00 0111234577888888888888888888777777543221 2345556777777777
Q ss_pred HHHHHHHHHHHHHHcCCCh------HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhc
Q 004339 247 LQLSIELVNEALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 320 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~ 320 (760)
++++++.|+.++....++. .++..||.++....++++|+-+..++..+... +.++.| ...
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s------~~l~d~-~~k------- 203 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS------YGLKDW-SLK------- 203 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh------cCcCch-hHH-------
Confidence 7777777777776543322 25666677777777777776666666554322 111111 000
Q ss_pred CchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHc
Q 004339 321 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVYFAQ 399 (760)
Q Consensus 321 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~la~~~~~~ 399 (760)
....+++.++..+..+|..-.|.++.+.+.++.-. ...+........+|.+|...
T Consensus 204 ------------------------yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 204 ------------------------YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred ------------------------HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 01235667888888899999999998888776431 11113456677899999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHH-----HHHHHHHHHHhCC
Q 004339 400 GNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQD-----CKKSLLRAIHLAP 453 (760)
Q Consensus 400 g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p 453 (760)
|+.+.|..-|+.|......-+| ..++...++++....-..+ |+++-.+++++..
T Consensus 260 gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 260 GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 9999999999999886543344 6677777888776655555 8888777777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=89.26 Aligned_cols=111 Identities=21% Similarity=0.281 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-cHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-DAQIL 425 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~ 425 (760)
+.+++.+|..+...|++++|+..|.+++...|++. ..+.+++.+|.++...|+++.|+.+|+.++..++... .+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 35678899999999999999999999999988321 2367899999999999999999999999999765533 37889
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
+.+|.++..+|++.+|+.+|.+++...|++..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 9999999999999999999999999999986543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.4e-06 Score=88.89 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=142.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHH
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 102 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~ 102 (760)
.+..++|.+|+..+.++++.+|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.||. .+++++|+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 4567889999999999999999999999999999999999999998887777777778888888888888 789999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhc-ccchhhhhh-----hhhH--HHHH
Q 004339 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD-SKTKTYVID-----ASAS--MLQF 174 (760)
Q Consensus 103 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~-----~~~~--~~~~ 174 (760)
+|++++..+|. ...++.+-.+|.+-+.|.+-.+.--++.+..|..++.. ......+.. .... .+.+
T Consensus 99 ~Ye~~~~~~P~------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 99 LYERANQKYPS------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHhhCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999887 47777777788887777654444444433333211110 000000000 0000 0000
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHcC-CcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL-ILFKYQ-DYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
.. ..+..+.... . .-....-....-.++..+|.+++|...+.. .....+ .+..........+...+++.+-.+
T Consensus 173 A~-~m~~~~l~~~---g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 173 AE-KMVQKLLEKK---G-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred HH-HHHHHHhccC---C-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 00 0011110000 0 001111223334566677889999888843 333333 333333445566667777777777
Q ss_pred HHHHHHHHcCCC
Q 004339 253 LVNEALKVNGKY 264 (760)
Q Consensus 253 ~~~~al~~~p~~ 264 (760)
+..+++...+++
T Consensus 248 l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 248 LSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHhCCcc
Confidence 777777776665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=83.91 Aligned_cols=67 Identities=40% Similarity=0.686 Sum_probs=60.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDP 79 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 79 (760)
++..|+.+|.+++..|+|++|+.+|.+++..+|+++.+|+.+|.++..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56788899999999999999999999999999999999999999999998 79999999999998887
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-05 Score=78.41 Aligned_cols=428 Identities=10% Similarity=0.052 Sum_probs=246.5
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+.|..+|.++.+|+.+..-+..+ -++++...|++.+...|..+.+|...+...+..++|+.-..+|.+++..-- +.+.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDL 88 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDL 88 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhH
Confidence 56889999999999999987777 999999999999999999999999999999999999999999999986432 3555
Q ss_pred HHHHHH-HHc-cCCHhHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcccc
Q 004339 85 FIDLGE-LLI-SSDTGAALDAFKTARTLLKK--AGEEVPIEVLNNIGVIHFE---------KGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 85 ~~~la~-~~~-~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p 151 (760)
|..+-. +-. .++...+....-+|..+.-. .-+.....+|...+.++.. ..+.+.-...|++++....
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 544332 222 34433333333333322211 1112234566665555432 3466677788888886532
Q ss_pred h-hhhhcccchhhh--hhh--hhHHH------HHHhHHhhhhhhccCCCc-----cCCcc-------hHHHHHHHHHHHH
Q 004339 152 W-LTLLDSKTKTYV--IDA--SASML------QFKDMQLFHRFENDGNHV-----ELPWN-------KVTVLFNLARLLE 208 (760)
Q Consensus 152 ~-~~~~~~~~~~~~--~~~--~~~~~------~~~~~~~~~~l~~~~~~~-----~~~p~-------~~~~~~~la~~~~ 208 (760)
. ...+......+. ++. +...+ -...-..++.+....+-+ ..+|. ....|.++...-.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 1 111111111110 000 00000 001111111111111111 11111 1122322222211
Q ss_pred HcC------C--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHc-CCCh
Q 004339 209 QIH------D--TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN--------------LQLSIELVNEALKVN-GKYP 265 (760)
Q Consensus 209 ~~g------~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~-p~~~ 265 (760)
..+ . -..-.-.|++++..-+.++.+|+..+..+...++ .+++..+|+.++..- ..+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 0 1123345667776667777777776666655555 566677777766532 2233
Q ss_pred HHHHHHHHHHhhcC---CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 266 NALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 266 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
.+++.++..-...- .++....++.+++.+.......+++.+-+. ..+. .-+..|..+|.++-+.
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~-irR~------------eGlkaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNF-IRRA------------EGLKAARKIFKKARED 395 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHH-HHHh------------hhHHHHHHHHHHHhhc
Confidence 34444444332222 366666777777776554445555555554 4444 5567777888777554
Q ss_pred CCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-
Q 004339 343 HTSNLYAANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT- 420 (760)
Q Consensus 343 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~- 420 (760)
.-....++..-|.+ |.-.++..-|..+|+-.+...+ +.+..-......+...++-..|..+|++++.. ..+.
T Consensus 396 ~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~-----d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ 469 (656)
T KOG1914|consen 396 KRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFG-----DSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSAD 469 (656)
T ss_pred cCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChh
Confidence 32222233222222 3356788888888888888887 67777777778888888888888888888885 1222
Q ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 421 -DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 421 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
...+|-..-..-..-|+...+++.=++-....|
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 256666666666667887777777766666666
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-07 Score=96.97 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC--c---
Q 004339 349 AANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--D--- 421 (760)
Q Consensus 349 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~--- 421 (760)
++..+|.+|... |+++.|+.+|.+++.+...... .....++..+|.++...|+|++|+.+|+++...+...+ .
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344578888888 9999999999999998642211 12356788999999999999999999999988642222 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
...++..+.|++..|++..|...|.+....+|.....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 3456788889999999999999999999999976443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=90.27 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=98.5
Q ss_pred hcHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 327 THLEKAKELYTRVIVQHTSN---LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
++...+...+..++..+|+. ..+.+.+|.+++..|++++|+..|..++...|... -.+.+.+.||.+++..|+|+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~--l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE--LKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHHHcCCHH
Confidence 78888888899999999988 44677899999999999999999999999775211 22568889999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 449 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 449 (760)
+|+..+..+.. .+..+.++..+|.+|...|++++|+..|++|+
T Consensus 103 ~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999976322 34457888899999999999999999999875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-08 Score=86.48 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
.+++.+|..+...|++++|+..|..++...| .++..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------------------~~~~~~~~~ 42 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP----------------------------------------KSTYAPNAH 42 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------------------------------------CccccHHHH
Confidence 4566677777777777777777777665322 112234566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
+.+|.++...|+++.|+.+|..++..+|++ +.+++.+|.++...|++.+|+.++.+++...|+++.+.
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 677777777777777777777777666653 45667777777777777777777777777777665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=96.87 Aligned_cols=117 Identities=22% Similarity=0.328 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c-C--CHhHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S-S--DTGAALDAFK 105 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~-~--~~~~A~~~~~ 105 (760)
.+.-+.-++..+..+|++++.|..||.+|+.+|++..|...|.+++++.|+++..+..+|.++. + | ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566777888889999999999999999999999999999999999999999999999999866 3 3 5789999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
+++.++|.+ +.+++.||..++..|+|.+|+..++.++...|
T Consensus 218 ~al~~D~~~-----iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPAN-----IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCcc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999997 89999999999999999999999999998765
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-07 Score=89.37 Aligned_cols=243 Identities=17% Similarity=0.137 Sum_probs=142.9
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHH
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAF 85 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 85 (760)
......|.-++...++.+|+..+.+.+..-.+.. ..+-.+..+...+|.|.+++.+--..+..... ...++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888899999998888887544332 23344455667777777776654443332111 13455
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
.+++..+. .-++.+++.+-...+.+-..............+|..+..++.|++++..|+.++....
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~------------- 153 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH------------- 153 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh-------------
Confidence 56666655 3366666666655555432222233445666677777777777777777777765311
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----c------HHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD----Y------VDAY 234 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~ 234 (760)
......-...++..||.+|....++++|+-+..++..+... + ..+.
T Consensus 154 ------------------------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 154 ------------------------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred ------------------------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 00011122356677777777777777777777776654321 1 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
+.++..+..+|..-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+.+...
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 555666666666666666666665542 122234455666666666666666666655543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-08 Score=95.20 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=114.7
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---CHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---~~~ 403 (760)
...+..+.-++..+..+|+++.-|..||.+|...|++..|...|.+++.+.| +++.++..+|.+++.+. ...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-----~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-----DNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCcccH
Confidence 3456667777888999999999999999999999999999999999999999 89999999999988766 577
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++..+|++++.. +|.++.+++.||..++..|+|.+|+..|+..+...|.+..-.
T Consensus 211 ~a~~ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 211 KARALLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 899999999996 899999999999999999999999999999999998775433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-08 Score=90.78 Aligned_cols=119 Identities=19% Similarity=0.149 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...+++.+|.++...|++++|+.+|.+++...| ..+....
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------~~~~~~~ 73 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEE----------------------------------------DPNDRSY 73 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh----------------------------------------ccchHHH
Confidence 467788889999999999999999998886432 1222456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+++.+|.++...|+++.|+.+|.+++...|.+..++..+|.++...|+...+...+..++.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------- 134 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------- 134 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH-------------------
Confidence 8888999999999999999999999998998888888889888888886655544444432
Q ss_pred CCHHHHHHHHHHhhhcCCC
Q 004339 279 DDWVKAKETFRAASDATDG 297 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~ 297 (760)
.+..|+.++.+++...|.
T Consensus 135 -~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 135 -LFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred -HHHHHHHHHHHHHhhCch
Confidence 255666666666666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=79.53 Aligned_cols=67 Identities=19% Similarity=0.496 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE-QWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 453 (760)
++.+|..+|.+++..|+|++|+..|.+++.. +|.++.+++.+|.+|..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999997 7889999999999999999 89999999999999998
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-08 Score=90.56 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=102.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
..+....+++.+|.++...|++++|+.+|.+++...|+. ..++..+|.++...|++++|+.++.+++...|.++.++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 455667789999999999999999999999999877653 56899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 346 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 346 (760)
..+|.++...|+...+...+..++ ..+..|+.++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~----------------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAE----------------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHH----------------------------------HHHHHHHHHHHHHHhhCchh
Confidence 999999999888777665444322 45677888888888888876
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.9e-09 Score=80.21 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=58.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
+.+|..++..|+|++|+.+|++++..+|.++.+++.+|.++..+|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-06 Score=81.73 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHH
Q 004339 362 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 441 (760)
Q Consensus 362 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 441 (760)
.+..|.-+|+..-+..| ..+......|.|++.+|+|++|...++.++.. .+++++++.++..+-...|...++
T Consensus 188 k~qdAfyifeE~s~k~~-----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTP-----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhHHHHHHHHhcccC-----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHH
Confidence 45555555555554433 34555555555555555555555555555553 445555555555555555554443
Q ss_pred H-HHHHHHHHhCCCChhH
Q 004339 442 K-KSLLRAIHLAPSNYTL 458 (760)
Q Consensus 442 ~-~~~~~al~~~p~~~~~ 458 (760)
. .++.+....+|+++.+
T Consensus 261 ~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 261 TERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHhcCCcchHH
Confidence 3 3334444445555433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-06 Score=78.58 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
.+..|.-+|+..-...|..+..+++++.|+..+|+|++|..+++.++..++ .+|.++.|+..+-...|.-.++..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHH
Confidence 344444445544444444444555555555555555555555555554444 444555555444444444444433
Q ss_pred H
Q 004339 408 M 408 (760)
Q Consensus 408 ~ 408 (760)
-
T Consensus 263 r 263 (299)
T KOG3081|consen 263 R 263 (299)
T ss_pred H
Confidence 3
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-07 Score=100.12 Aligned_cols=218 Identities=19% Similarity=0.182 Sum_probs=128.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 67 AQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 145 (760)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 145 (760)
...-|.+.+..+|+....|+.+-.... .++.+.|...+++|+....-........+|..+-.+...-|.-+.....|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 345556666666666666665544444 4566666666666665431111111234454444444445555566666666
Q ss_pred HhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 146 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 225 (760)
Q Consensus 146 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 225 (760)
|.+.| +...++..|..+|...+.+++|.++|+.+++
T Consensus 1523 Acqyc--------------------------------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~K 1558 (1710)
T KOG1070|consen 1523 ACQYC--------------------------------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLK 1558 (1710)
T ss_pred HHHhc--------------------------------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 65532 2334566666667777777777777777776
Q ss_pred HcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 226 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 226 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
........|..++..++.+++-+.|..++.+|+..-|. +..+....+.+.++.|+.+.+..+|+-.+..+|. ....|
T Consensus 1559 KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW 1637 (1710)
T KOG1070|consen 1559 KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLW 1637 (1710)
T ss_pred HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHH
Confidence 66666666777777776666666667777777766665 5556666666666666666666666666666665 45555
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
..+... -... |....+..+|++++.+
T Consensus 1638 ~VYid~-eik~------------~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1638 SVYIDM-EIKH------------GDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHH-HHcc------------CCHHHHHHHHHHHHhc
Confidence 544444 3333 5666666666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=97.34 Aligned_cols=130 Identities=19% Similarity=0.165 Sum_probs=117.1
Q ss_pred hhhHHHHHHHcCC---HHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCc
Q 004339 17 YYGLGQVQLKLGD---FRSALTNFEKVL---EIYPDNCETLKALGHIYVQL---------GQIEKAQELLRKAAKIDPRD 81 (760)
Q Consensus 17 ~~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 81 (760)
++..|...+..+. ...|+.+|.+++ .++|..+.+|..++.|++.. ....+|+.+..+++.++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3778888877664 567999999999 99999999999999999865 34578899999999999999
Q ss_pred HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 82 AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 82 ~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
+.++..+|.++. .++++.|+..|++|+.++|+. +.+|+..|.+++..|+.+.|+..+++++.+.|
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-----A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-----ASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 999999999887 778999999999999999997 99999999999999999999999999998554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=83.71 Aligned_cols=97 Identities=36% Similarity=0.553 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
+++.+|.+++..|++..|+..|.+++...|.+..++..+|.++...|+++.|+.+|..++...|.+..++..+|.++. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 577888999999999999999999999888888888999999999999999999999999888888888888888777 6
Q ss_pred CCHhHHHHHHHHHHHHHH
Q 004339 95 SDTGAALDAFKTARTLLK 112 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~ 112 (760)
|++..|...+..++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 788888888888776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=86.12 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=106.9
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---AQAFIDLG 89 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 89 (760)
..|..+...+..+++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. +.+.+.++
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 45566666678999999999999999999998 5788889999999999999999999999987654 45788899
Q ss_pred HHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004339 90 ELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 90 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 147 (760)
.++. .|++++|+..+..+.. ....+.++..+|.+|...|++++|+..|+++|
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9988 8899999999966221 12236788999999999999999999999875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-05 Score=78.26 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH-
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILF--KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD- 273 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 273 (760)
.......+..+...+.+..+...+...+. ..+.....+..++.++...+.+..++..+..++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45666777777777777777777777776 566677777777777777777777777777777766666555555555
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCC--CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-CHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATD--GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAA 350 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 350 (760)
++...|++..|...|.+++...+ ......+...+.. +... +++..|+..+.+++...+. ....+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGAL-LEAL------------GRYEEALELLEKALKLNPDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH-HHHh------------cCHHHHHHHHHHHHhhCcccchHHH
Confidence 67777777777777777765433 1233333333333 3344 6666677777776666666 46666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
..++.++...+.+..|+..+..++...| .....+..++..+...+.+..+...+..++..
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDP-----DNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCc-----ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666666666665 33445555555555555566666666666654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-07 Score=83.03 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+..++..|.+|-..|-+.-|.--|.+++.+.|..+.++..+|..+...|+++.|.+.|...++++|.+..+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35677888899999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSY 301 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~ 301 (760)
+.--|++.-|..-+.+-.+..|. +++
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~-DPf 168 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPN-DPF 168 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCC-ChH
Confidence 88889999998888888877776 554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-08 Score=81.50 Aligned_cols=99 Identities=20% Similarity=0.389 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 428 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 428 (760)
+++.+|.++...|++.+|+.+|..++...| .++.+++.+|.++...|+++.|+..|..++.. .+.+..++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 74 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHH
Confidence 467899999999999999999999999988 67789999999999999999999999999996 56667899999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
|.++...|++..|..++..++...|.
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999988874
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-05 Score=78.48 Aligned_cols=416 Identities=14% Similarity=0.071 Sum_probs=256.0
Q ss_pred chhhhhHHHHHHHcC--CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC---CCc---
Q 004339 14 IFPYYGLGQVQLKLG--DFRSALTNFEKVLEIYPDN---CETLKALGHIY-VQLGQIEKAQELLRKAAKID---PRD--- 81 (760)
Q Consensus 14 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 81 (760)
+.+++++|..+...| +...++.+++.++...|.+ +.....+|.++ ....+++.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 457888999999999 8999999999999887764 45677777754 45689999999999998664 433
Q ss_pred -HHHHHHHHHHHc-cC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc-------
Q 004339 82 -AQAFIDLGELLI-SS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI------- 151 (760)
Q Consensus 82 -~~~~~~la~~~~-~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 151 (760)
..+...|+.+|. .. .+..|...+++++++....+ ......++.|+.++....++..|+..+.-......
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p-~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~yl 165 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP-YWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYL 165 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHH
Confidence 345667888877 33 78899999999999876652 22346678889999999999999887533221100
Q ss_pred -------------------------------hhhhhcc-----cchhhh--------hhhhhHHHHH-HhHHhhhhhhcc
Q 004339 152 -------------------------------WLTLLDS-----KTKTYV--------IDASASMLQF-KDMQLFHRFEND 186 (760)
Q Consensus 152 -------------------------------~~~~~~~-----~~~~~~--------~~~~~~~~~~-~~~~~~~~l~~~ 186 (760)
|...... ....++ +..+...... ...++-..+...
T Consensus 166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence 0000000 000000 0000000000 000111111111
Q ss_pred CCC--------ccCCcch---------HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHc------CCcHHH--------
Q 004339 187 GNH--------VELPWNK---------VTVLFNLAR--LLEQIHDTVAASVLYRLILFKY------QDYVDA-------- 233 (760)
Q Consensus 187 ~~~--------~~~~p~~---------~~~~~~la~--~~~~~g~~~~A~~~~~~~l~~~------p~~~~~-------- 233 (760)
... +..++-. ..++..+.. --...|-+++|.++-.+++..- |....+
T Consensus 246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 111 0111100 111111111 1124577888888888777542 212222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---cCC-------ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 234 YLRLAAIAKARNNLQLSIELVNEALKV---NGK-------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 234 ~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+-.++.+-.-.|++.+|+.-+..+... .|. .+.+.+.+|......+.++.|...|..+.+.....+..++
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 234555667789999999888777654 343 3447778888888899999999999999987765454443
Q ss_pred --HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHH
Q 004339 304 --LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN----------LYAANGAGVVLAEKGQFDVSKDLFT 371 (760)
Q Consensus 304 --~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~ 371 (760)
.+++.. |... ++.+.-.+.++ .+.|.+ ..+++..|...+.++++.+|...+.
T Consensus 406 ~nlnlAi~-YL~~------------~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 406 CNLNLAIS-YLRI------------GDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLR 469 (629)
T ss_pred HHHhHHHH-HHHh------------ccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 455666 7766 55443333333 334432 2356667888889999999999999
Q ss_pred HHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH----HHHHHHHHHHhcc--HHHHHHH
Q 004339 372 QVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI----LLYLARTHYEAEQ--WQDCKKS 444 (760)
Q Consensus 372 ~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~la~~~~~~g~--~~~A~~~ 444 (760)
+.++...... +.-..-.+..|++++...|+..++.....-++......+|..+ ...+-.+|...|+ .....+.
T Consensus 470 e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~ 549 (629)
T KOG2300|consen 470 ETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEA 549 (629)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9988763111 1112445678899999999999999999988887655555222 2244556666676 4445444
Q ss_pred HH
Q 004339 445 LL 446 (760)
Q Consensus 445 ~~ 446 (760)
|.
T Consensus 550 ~~ 551 (629)
T KOG2300|consen 550 FR 551 (629)
T ss_pred HH
Confidence 44
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00019 Score=74.59 Aligned_cols=411 Identities=13% Similarity=0.153 Sum_probs=222.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC
Q 004339 38 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE 116 (760)
Q Consensus 38 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~ 116 (760)
++-++.+|.+..+|+.|..-+..+ -+++....|++.+...|..+.+|........ ..+|.....+|.+++...-+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh---
Confidence 667889999999999999887776 9999999999999999999999998888766 67999999999998875443
Q ss_pred CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhcc---------
Q 004339 117 EVPIEVLN-NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND--------- 186 (760)
Q Consensus 117 ~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 186 (760)
.++|. .|..+-...|....+....-++......-.- ++.....+...-..+.+.....
T Consensus 86 ---lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig---------~di~s~siW~eYi~FL~~vea~gk~ee~QRI 153 (656)
T KOG1914|consen 86 ---LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG---------MDIKSYSIWDEYINFLEGVEAVGKYEENQRI 153 (656)
T ss_pred ---HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc---------cCcccchhHHHHHHHHHcccccccHHHHHHH
Confidence 34553 2334444455555544444444432100000 0000000000000011100000
Q ss_pred -------CCCccCCcchHHHHHHHHHHHHHcCCHHH--------------------HHHHHHHHHHH-------cCC---
Q 004339 187 -------GNHVELPWNKVTVLFNLARLLEQIHDTVA--------------------ASVLYRLILFK-------YQD--- 229 (760)
Q Consensus 187 -------~~~~~~~p~~~~~~~~la~~~~~~g~~~~--------------------A~~~~~~~l~~-------~p~--- 229 (760)
.+++..+-.+ +-.+...-..|+. |...++..... .|.
T Consensus 154 ~~vRriYqral~tPm~n------lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 154 TAVRRIYQRALVTPMHN------LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPP 227 (656)
T ss_pred HHHHHHHHHHhcCcccc------HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 0111111111 1111111111111 11222221110 000
Q ss_pred --------cHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCC-------------
Q 004339 230 --------YVDAYLRLAAIAKARN------NL--QLSIELVNEALKVNGKYPNALSMLGDLELKNDD------------- 280 (760)
Q Consensus 230 --------~~~~~~~la~~~~~~g------~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------- 280 (760)
....|.++...-...+ .. ..-.-.|++++...+.++.+|+..+..+...++
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 0111222222211111 00 112234566666667777777766665555554
Q ss_pred -HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 004339 281 -WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-YAANGAGVVLA 358 (760)
Q Consensus 281 -~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 358 (760)
-.++..+|++++......+...++.++.. -.. +. .-..++.....+.+++.....++ .+|..+-..-.
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~--eE~-~~-------~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir 377 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADY--EES-RY-------DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR 377 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHH-hc-------ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH
Confidence 56667777777664332222222222221 100 00 00135556667777666533322 24455555555
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV-YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+..-...|..+|.++.+..- ....++..-|.+ |...++..-|..+|+-.+..| ++.+..-+.....+...|+
T Consensus 378 R~eGlkaaR~iF~kaR~~~r-----~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKR-----TRHHVFVAAALMEYYCSKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred HhhhHHHHHHHHHHHhhccC-----CcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCc
Confidence 66667888888988887543 222444433333 556788999999999999875 4456666677777888899
Q ss_pred HHHHHHHHHHHHHh--CCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004339 438 WQDCKKSLLRAIHL--APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 438 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
-..|...|++++.. .|+ ....++.++. +++.-++++..++++-.+....-
T Consensus 451 d~N~R~LFEr~l~s~l~~~------ks~~Iw~r~l------------~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 451 DNNARALFERVLTSVLSAD------KSKEIWDRML------------EYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred chhHHHHHHHHHhccCChh------hhHHHHHHHH------------HHHHhcccHHHHHHHHHHHHHhc
Confidence 99999999999876 322 2223344443 56667777777777666555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-06 Score=98.74 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cCC----ChHHHHHHHHHHhhcCCHHHHHHHH
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-NGK----YPNALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~ 288 (760)
.+...-|.+.+..+|+..-.|+.+...++..+..++|..+++++|.. ++. -..+|..+-++...-|.-+...+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34556788888889999999999999999999999999999999964 332 2347777777777778888888999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004339 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 289 ~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 368 (760)
+++.+... ....+..|..+ |... +.++.|.++|+..++..-....+|..+|..++...+-+.|..
T Consensus 1521 eRAcqycd--~~~V~~~L~~i-y~k~------------ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1521 ERACQYCD--AYTVHLKLLGI-YEKS------------EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHHHHhcc--hHHHHHHHHHH-HHHh------------hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH
Confidence 99988764 34567788888 8888 999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 369 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 369 ~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
++.+|+...|.. ....+....|.+-++.|+.+.+..+|+..+.. .|...++|.-+...-.+.|....++..|+++
T Consensus 1586 lL~rAL~~lPk~---eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQ---EHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHhhcchh---hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999943 46788889999999999999999999999995 6777889999999999999999999999999
Q ss_pred HHhC--CCChhHHhhHHHHHHH
Q 004339 449 IHLA--PSNYTLRFDAGVAMQK 468 (760)
Q Consensus 449 l~~~--p~~~~~~~~la~~~~~ 468 (760)
+.+. |......|..-+-|.+
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHH
Confidence 8764 5555556655555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=93.12 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-cHH
Q 004339 346 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-DAQ 423 (760)
Q Consensus 346 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~ 423 (760)
+...++..|..+ ...|+|++|+..|..++...|.+. ..+.+++.+|.+|+..|+++.|+..|..++..+|..+ .+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~--~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST--YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 456667777766 567999999999999999999542 2378999999999999999999999999999876543 499
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
+++.+|.++..+|+++.|+.+|++++..+|+...+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999999988654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-06 Score=80.32 Aligned_cols=224 Identities=21% Similarity=0.256 Sum_probs=192.1
Q ss_pred cCCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 210 IHDTVAASVLYRLILFKYQD--YVDAYLRLAAIAKARNNLQLSIELVNEALK--VNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 210 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
.+.+..+...+..++...+. ........+..+...+.+..+...+...+. ..+.....+..++.++...+.+..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57778888888888887776 478888999999999999999999999997 67888889999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHH-HHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcC
Q 004339 286 ETFRAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT---SNLYAANGAGVVLAEKG 361 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~-~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g 361 (760)
..+..++...+.. .......+. + +... |.+..|...|.+++...| .....+..++..+...+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGA-LYEL------------GDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 9999999877653 233333333 5 6676 999999999999988777 45666777777788999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHH
Q 004339 362 QFDVSKDLFTQVQEAASGSVFVQ-MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD 440 (760)
Q Consensus 362 ~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 440 (760)
++..|+..+..++...+ . ....+..++.++...+.+..|+..+..++.. .+.....+..++..+...|.+..
T Consensus 182 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 182 RYEEALELLEKALKLNP-----DDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred CHHHHHHHHHHHHhhCc-----ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHH
Confidence 99999999999999998 5 5889999999999999999999999999996 34457778888888887788999
Q ss_pred HHHHHHHHHHhCCC
Q 004339 441 CKKSLLRAIHLAPS 454 (760)
Q Consensus 441 A~~~~~~al~~~p~ 454 (760)
+...+.+++...|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999997
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=81.14 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
.|+|+.|+.+|.+++...|.+ .+..+++.+|.||+..|+|.+|+.++++ +.. .+.++.+.+.+|.|++.+|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~---~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN---PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT---HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHHCCCC---hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHH
Confidence 466667777777777766621 1355566667777777777777777766 332 3344566666677777777777
Q ss_pred HHHHHHHHH
Q 004339 440 DCKKSLLRA 448 (760)
Q Consensus 440 ~A~~~~~~a 448 (760)
+|+.+|+++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 777776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-08 Score=86.60 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=92.4
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.+++.....|..|.-++..|++++|..+|.-+...+|.++..|+.||.|+..+++|.+|+..|..+..++++++.+.+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHH
Q 004339 89 GELLI-SSDTGAALDAFKTART 109 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~ 109 (760)
|.|+. .|+...|+.+|..++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 99988 7899999999999888
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-08 Score=89.81 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHH
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDC 441 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A 441 (760)
|..+...+...+...+.. ....+|+.+|.++..+|++++|+..|.+++...+.+.+ +.++..+|.+|...|++++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~---~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 15 FTIVADILLRILPTTSGE---KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred cccchhhhhHhccCCchh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 445555554444333311 34778899999999999999999999999987544433 56899999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 004339 442 KKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL 507 (760)
Q Consensus 442 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~~ 507 (760)
+.+|.+++.+.|.+...+.+++.++...++.. ..+.++..++..+..|..+|.......|.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~-----~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQA-----IEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHH-----HHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999998776422 23457788888899999998888776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=80.97 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=71.3
Q ss_pred hcHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 327 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|+++.|+.+|++++...|. +..+++.+|.||+..|+|.+|+.++++ ....| .++.+++.+|.|++.+|+|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----CHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----CCHHHHHHHHHHHHHhCCHHH
Confidence 8999999999999999995 466788899999999999999999999 77777 678899999999999999999
Q ss_pred HHHHHHHH
Q 004339 405 AMKMYQNC 412 (760)
Q Consensus 405 A~~~~~~a 412 (760)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-05 Score=82.52 Aligned_cols=124 Identities=18% Similarity=0.160 Sum_probs=95.2
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+-++..|+...+....|.++++.|.+++|..+++..-...+++...+-.+-.||..+|++++|..+|++++..+|+ ...
T Consensus 34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 4567889999999999999999999999998888887777888899999999999999999999999999999998 777
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
...+-.+|. .+.|.+-.+.--+..+..|+. +...|..+..+....
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~----~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKR----AYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc----cchHHHHHHHHHHhc
Confidence 777777776 445554444434444455554 234444444444443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-06 Score=86.81 Aligned_cols=223 Identities=12% Similarity=0.036 Sum_probs=139.9
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHH---Hhc---CC--C
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----N-CETLKALGHIYVQLGQIEKAQELLRKA---AKI---DP--R 80 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~-~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~---~p--~ 80 (760)
...+|..|.+++....|..|+......+..-.. . ....+..-.++....+-++|+.++.-. +.. .| +
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 456788999999999999999887776543211 1 122233334445555666666554322 211 11 0
Q ss_pred cHHH-------------------------HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 004339 81 DAQA-------------------------FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 81 ~~~~-------------------------~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 134 (760)
+... .......|. ..+...+..-.+.++.+..+ .+.++...+..++..|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~-----s~~~l~LKsq~eY~~g 254 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD-----SSMALLLKSQLEYAHG 254 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC-----CcHHHHHHHHHHHHhc
Confidence 1000 000001111 11222222222333333222 4678888899999999
Q ss_pred CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch--HHHHHHHHHHHHHcCC
Q 004339 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--VTVLFNLARLLEQIHD 212 (760)
Q Consensus 135 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~--~~~~~~la~~~~~~g~ 212 (760)
+|.+|.+.+...--.+ .......|.. ...|.++|.++++.|.
T Consensus 255 n~~kA~KlL~~sni~~------------------------------------~~g~~~T~q~~~cif~NNlGcIh~~~~~ 298 (696)
T KOG2471|consen 255 NHPKAMKLLLVSNIHK------------------------------------EAGGTITPQLSSCIFNNNLGCIHYQLGC 298 (696)
T ss_pred chHHHHHHHHhccccc------------------------------------ccCccccchhhhheeecCcceEeeehhh
Confidence 9999999886531100 0000122222 2356789999999999
Q ss_pred HHHHHHHHHHHHHH---------cC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 213 TVAASVLYRLILFK---------YQ---------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 213 ~~~A~~~~~~~l~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
|.-+..+|.++++. .| ....+.++.|..|...|++-.|.++|.+++..+..+|.+|..++.+
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999999951 11 2346788999999999999999999999999999999999999988
Q ss_pred Hhh
Q 004339 275 ELK 277 (760)
Q Consensus 275 ~~~ 277 (760)
.+.
T Consensus 379 Cim 381 (696)
T KOG2471|consen 379 CIM 381 (696)
T ss_pred HHH
Confidence 763
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-06 Score=85.68 Aligned_cols=354 Identities=15% Similarity=0.100 Sum_probs=208.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHH-HHHhc---CCCCCHHHHHH
Q 004339 51 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTART-LLKKA---GEEVPIEVLNN 125 (760)
Q Consensus 51 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~-~~~~~---~~~~~~~~~~~ 125 (760)
.......|.++.+...+..-.+.++.+..+.+.+++..+..++ .|++.+|.+.+...-- -.|.. +.-....+|++
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 3334455566677777777777777777788888888888866 8999999988765311 11110 00112456799
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
+|.++++.|.|.-+..+|.+++. .|..... . +.......-.......++|++|
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchhhHHhhh
Confidence 99999999999999999999995 2210000 0 0000000001223567999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC---------------------------------------
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN--------------------------------------- 245 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------------------------------------- 245 (760)
..|...|++-.|.++|.+++..+-.++..|+++|.+++...
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~ 422 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVE 422 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceec
Confidence 99999999999999999999999999999999999875311
Q ss_pred ----------CHHHHHHHHHHHHHHcCC----------------------------------------------Ch----
Q 004339 246 ----------NLQLSIELVNEALKVNGK----------------------------------------------YP---- 265 (760)
Q Consensus 246 ----------~~~~A~~~~~~al~~~p~----------------------------------------------~~---- 265 (760)
..+-|.-++..++-+-|. .|
T Consensus 423 ~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e 502 (696)
T KOG2471|consen 423 LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFE 502 (696)
T ss_pred cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHH
Confidence 011133334333322110 00
Q ss_pred -------HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH
Q 004339 266 -------NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338 (760)
Q Consensus 266 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 338 (760)
.++...+.+-+..|+.-.|+..-.+.+.... -..++..||.+ |........ .+..+|...+.-
T Consensus 503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~--lS~~~kfLGHi-YAaEAL~ll-------dr~seA~~HL~p 572 (696)
T KOG2471|consen 503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD--LSKIYKFLGHI-YAAEALCLL-------DRPSEAGAHLSP 572 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh--hhhHHHHHHHH-HHHHHHHHc-------CChhhhhhccCh
Confidence 1344556666777888888888887777643 34555666666 543211100 333344333322
Q ss_pred HHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 339 VIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDL-FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 339 al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
-+-- +..+...|..-- ++++- -.+..+..|.+...-...++++||.++.-+|.+++|..++
T Consensus 573 ~~~~~~~f~~~~n~~Df~~~~~~~----------e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll 642 (696)
T KOG2471|consen 573 YLLGQDDFKLPYNQEDFDQWWKHT----------ETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLL 642 (696)
T ss_pred hhcCCcccccccchhhhhhhhccc----------cccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1100 000011111000 00000 0001111111111122456788888888888888888888
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 410 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 410 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..+..+.+.-..+.+....-.+-.++|+...|...+++.-.
T Consensus 643 ~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 643 THAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 88888765334456655555566778888888888877543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=84.18 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=98.3
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 340 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 340 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
..+.++.....+..|.-++..|++++|..+|+-..-.+| .++..|+.||.|+..+++|+.|+..|..+..+ .+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~ 102 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-----YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LK 102 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc
Confidence 344555667888899999999999999999999999998 78999999999999999999999999999886 56
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 420 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.++...++.|.||+.+|+...|+.+|..++. .|.+..+
T Consensus 103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 7888899999999999999999999999998 4654443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-07 Score=92.59 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=101.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CC---------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV---------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
-..|..|++.|+|..|...|.+++...+... ++ .-..+++|++.||.+++.|..|+..+.++|.. .|+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCC
Confidence 3468889999999999999999887764211 10 01347899999999999999999999999996 899
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
++.++|..|.+|..+|+|+.|+..|++|+++.|+|..+...|..|-++..
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988865543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-07 Score=100.89 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=105.1
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHH--hcCCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--------QFDVSKDLFTQVQEA--ASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~la~~~ 396 (760)
+.+..|+.+|++++.++|++..++..++.++.... ....+.....+++.+ .| ..+.++..+|.++
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~-----~~~~~~~ala~~~ 430 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN-----VLPRIYEILAVQA 430 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc-----CChHHHHHHHHHH
Confidence 56889999999999999999999999998886542 233455555555554 33 5678999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...|++++|...|++++.+ +| +...|..+|.++...|++++|+..|.+|+.++|.++.
T Consensus 431 ~~~g~~~~A~~~l~rAl~L--~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDL--EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhcCCHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999999997 44 5889999999999999999999999999999999885
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=87.20 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
....+++.+|.++...|+++.|+..|.+++.+.|+ .+.++..+|.++...|++++|+.+|.+++.+.|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 35678899999999999999999999999988765 345899999999999999999999999999999999999998
Q ss_pred HHHHh-------hcCCHH-------HHHHHHHHhhhcCCCCChHHHHHHH
Q 004339 272 GDLEL-------KNDDWV-------KAKETFRAASDATDGKDSYATLSLG 307 (760)
Q Consensus 272 a~~~~-------~~g~~~-------~A~~~~~~al~~~~~~~~~~~~~lg 307 (760)
|.++. ..|++. +|+.+|.+++...|.....+...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 88888 777877 4455555566666654333333333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-07 Score=80.87 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 310 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~ 310 (760)
...++..|.+|-..|-..-|.-.|.+++.+.|..+.++..+|..+...|+|+.|...|...+++.|. ..++..+.|..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~- 142 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA- 142 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhcccee-
Confidence 4456677888888888999999999999999999999999999999999999999999999999998 78888888888
Q ss_pred HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 004339 311 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 390 (760)
Q Consensus 311 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 390 (760)
++-. |++.-|..-+.+....+|+++.--..+-.. ...-++.+|..-+.+-..... .....|.
T Consensus 143 ~YY~------------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d-----~e~WG~~ 204 (297)
T COG4785 143 LYYG------------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSD-----KEQWGWN 204 (297)
T ss_pred eeec------------CchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhcc-----HhhhhHH
Confidence 6666 999999999999999999998733222111 233466777655544333221 1222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 391 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.+-+-+|+... ...++++..-..++.. .+++++||..|...|+..+|...|+-|+..+
T Consensus 205 ---iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 205 ---IVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ---HHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22233343322 1233333332111111 7789999999999999999999999888754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-06 Score=80.00 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=143.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---AL 268 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 268 (760)
..+..++.-|...+..|+|.+|+..|+.+...+|.. ..+.+.++.++++.++++.|+..+++.+.++|.++. ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 346788999999999999999999999999888754 467888888999999999999999999999887765 45
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
+..|.++ |.. +... .... .....|+..|+.++...|++.+
T Consensus 112 YlkgLs~------------~~~---i~~~-------------~rDq------------~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLSY------------FFQ---IDDV-------------TRDQ------------SAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHH------------hcc---CCcc-------------ccCH------------HHHHHHHHHHHHHHHHCCCCcc
Confidence 5555541 111 1100 0001 4456778888899999998876
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 427 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 427 (760)
+-.....+ ..+... ...--..+|..|.+.|.+-.|+..++.++..++.... .+.+..
T Consensus 152 a~dA~~~i-----------~~~~d~-----------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKARI-----------VKLNDA-----------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHHHH-----------HHHHHH-----------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 43322221 111111 1333467899999999999999999999998655444 788999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
+..+|+.+|-.++|...-.-.-.-.|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999998877654444455554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=94.03 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=133.2
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
|.+|. .+++.+|..+|.++.......+... ....+...+.+|... ++..|+.+|.+++.+...
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~-------------- 106 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE-------------- 106 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh--------------
Confidence 44555 5677777777777766655432221 234556666666555 999999999999863110
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcC------CcHHHHHHHHH
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVLYRLILFKYQ------DYVDAYLRLAA 239 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p------~~~~~~~~la~ 239 (760)
......-..++..+|.+|... |+++.|+.+|++++.... ....++..+|.
T Consensus 107 -----------------------~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 107 -----------------------AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -----------------------CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -----------------------cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 001122356888999999999 999999999999997742 12456789999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCC----h---HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC-hHHHHHHHHHHH
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKY----P---NALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYATLSLGNWNY 311 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~----~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~lg~~~y 311 (760)
++...|+|.+|+..|+++....-.+ . ..++..+.+++..|++..|...|.+.....|.-. +.-...+..+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l-- 241 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL-- 241 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH--
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH--
Confidence 9999999999999999998754221 1 2456778899999999999999999998876421 1111111111
Q ss_pred HHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 312 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
+..+... ....+..|+.-|..+.+++|
T Consensus 242 ~~A~~~~------D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 242 LEAYEEG------DVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHTT-------CCCHHHHCHHHTTSS---H
T ss_pred HHHHHhC------CHHHHHHHHHHHcccCccHH
Confidence 1111111 11567777777776655543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-07 Score=100.24 Aligned_cols=137 Identities=15% Similarity=0.045 Sum_probs=114.5
Q ss_pred CCCCCch--hhhhHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 004339 9 KPHEFIF--PYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKALGHIYVQLG--------QIEKAQELLRKAA 75 (760)
Q Consensus 9 ~~p~~~~--~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al 75 (760)
..|.++. .++..|..|+..+. +..|+.+|+++++.+|+++.++-.++.+|.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455544 45778888887765 889999999999999999999999888876542 3456666677766
Q ss_pred hc--CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 76 KI--DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 76 ~~--~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
.+ +|..+.++..+|.++. .|++++|...+++|+.++|. ..+|..+|.++...|++++|+..|.+++.++|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 64 7778888988988877 88999999999999999984 68999999999999999999999999999766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=87.82 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 428 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 428 (760)
.+..|.-++..|+|..|...|...+...|++.+ .+.+++.||.+++.+|+|..|...|..+++.+|..+- ++.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 677888889999999999999999999997754 4889999999999999999999999999998766544 8999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
|.|...+|+.++|..+|+++++.+|....+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999999999999999876653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.3e-08 Score=74.01 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 265 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 265 (760)
+.+|..++..|++++|+..|+.++..+|.++.+++.+|.++...|++++|+.+|++++..+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999998875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=91.43 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=87.7
Q ss_pred chhhhhHHHHH-HHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHH
Q 004339 14 IFPYYGLGQVQ-LKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQAFI 86 (760)
Q Consensus 14 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 86 (760)
...+|..|..+ +..|+|++|+..|+.++..+|++ +.+++.+|.+|+..|+++.|+..|.+++..+|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45678888876 56799999999999999999987 589999999999999999999999999988776 467788
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
.+|.++. .|++..|+..|++++...|+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 8888886 788888888888888888875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-07 Score=76.62 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
.+++.+|.++-..|+.++|+.+|++++..++ ..+....++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL----------------------------------------~~~~~~~a~ 41 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL----------------------------------------SGADRRRAL 41 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------------CchHHHHHH
Confidence 4678888888888998999999988887432 233445688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
+.+|.++..+|++++|+.+++..+..+|+ +..+...++.++...|++++|+..+-.++.
T Consensus 42 i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 42 IQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888787 777777888888888888888888876664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-08 Score=74.07 Aligned_cols=68 Identities=35% Similarity=0.509 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
++..|+|++|+.+|++++..+|++..+++.+|.+|+..|++++|...+.+++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999988888777653
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=89.76 Aligned_cols=168 Identities=10% Similarity=0.048 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHH---hcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 52 KALGHIYVQLGQ---IEKAQELLRKAA---KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 52 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
+..|...+..+. ...|+.+|.+++ .++|....+|..++.|++.. ..
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~----------------------------~~ 310 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL----------------------------AL 310 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH----------------------------HH
Confidence 556666555543 466777888888 77888888877777775420 00
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
+|..- ......+|.....+++. .+|.++.+++.+|.
T Consensus 311 ~g~~~-~~~~~~~a~~~A~rAve-------------------------------------------ld~~Da~a~~~~g~ 346 (458)
T PRK11906 311 HGKSE-LELAAQKALELLDYVSD-------------------------------------------ITTVDGKILAIMGL 346 (458)
T ss_pred hcCCC-chHHHHHHHHHHHHHHh-------------------------------------------cCCCCHHHHHHHHH
Confidence 00000 12234455555555555 45566666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH-HhhcCCHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL-ELKNDDWVKA 284 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A 284 (760)
++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..+++++.++|.-..+-...-.+ .+-..-.+.|
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNN 426 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhh
Confidence 666666666677777777766777777777777766667777777777777776666655443333333 2333345666
Q ss_pred HHHHHHh
Q 004339 285 KETFRAA 291 (760)
Q Consensus 285 ~~~~~~a 291 (760)
+.+|-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 6665443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.4e-07 Score=89.27 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCChHHHHHH
Q 004339 305 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---------------NLYAANGAGVVLAEKGQFDVSKDL 369 (760)
Q Consensus 305 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~ 369 (760)
..|+. |++. |+|..|...|++++..-+. -..++++++.|+.+++.|..|+..
T Consensus 213 e~Gn~-~fK~------------gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 213 ERGNV-LFKE------------GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred HhhhH-HHhh------------chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 45677 8888 9999999999998875331 133789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHH
Q 004339 370 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC-KKSLLRA 448 (760)
Q Consensus 370 ~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a 448 (760)
..+++...| .++.+++..|.++..+|+|+.|+..|+++++. .|.|..+...|..|-.+...+... .+.|..+
T Consensus 280 c~kvLe~~~-----~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 280 CNKVLELDP-----NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHhcCC-----CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 88999999999999999999999999999997 788888888998888887776654 7888888
Q ss_pred HHhCC
Q 004339 449 IHLAP 453 (760)
Q Consensus 449 l~~~p 453 (760)
+..-+
T Consensus 353 F~k~~ 357 (397)
T KOG0543|consen 353 FAKLA 357 (397)
T ss_pred hhccc
Confidence 87655
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-05 Score=74.77 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=90.5
Q ss_pred CccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh
Q 004339 189 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD---AYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 265 (760)
Q Consensus 189 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 265 (760)
.....|-...+.+.++.++++.++++.|+..+.+.+.++|.++. +++..|.+++..
T Consensus 63 ~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~--------------------- 121 (254)
T COG4105 63 RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ--------------------- 121 (254)
T ss_pred cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc---------------------
Confidence 33455666789999999999999999999999999999987654 344444442211
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 266 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 266 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+-.......-...|+..|...+...|+ ..++--....+.++. .++.
T Consensus 122 -----i~~~~rDq~~~~~A~~~f~~~i~ryPn-S~Ya~dA~~~i~~~~-----------------d~LA----------- 167 (254)
T COG4105 122 -----IDDVTRDQSAARAAFAAFKELVQRYPN-SRYAPDAKARIVKLN-----------------DALA----------- 167 (254)
T ss_pred -----CCccccCHHHHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHH-----------------HHHH-----------
Confidence 000111111234455555666666655 222222111110111 0111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (760)
.-=..+|..|.+.|.+-.|+.-++.+++..|... ....++..+..+|..+|-.++|...-
T Consensus 168 --~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~--~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 168 --GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS--AVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred --HHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHhCChHHHHHHH
Confidence 1112356666666666666666666666655221 23456666666666677666665543
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0012 Score=67.89 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCC--C
Q 004339 48 CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRD---AQAFIDLGELLI--SSDTGAALDAFKTARTLLKKAGEE--V 118 (760)
Q Consensus 48 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~--~ 118 (760)
+.+++.+|..+...| ++..++.+++..+...|.+ +...+.+|.++. ..+++.|...++++..+....+.. .
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 467888999999999 9999999999999887764 456788888766 569999999999998876554321 2
Q ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchH
Q 004339 119 PIEVLNNIGVIHFEKG-EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 197 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ 197 (760)
...+...|+.+|.... .+..|...+.+++.+... ..--..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~---------------------------------------~p~wsc 127 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS---------------------------------------VPYWSC 127 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC---------------------------------------CchhhH
Confidence 3567788899998887 889999999999874321 111234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
...+.|+.++.-..++..|++.+.
T Consensus 128 kllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHHh
Confidence 577889999999999999998844
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.001 Score=70.79 Aligned_cols=119 Identities=12% Similarity=0.163 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc--cCCHhHHHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI--SSDTGAALDAFKTA 107 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~A~~~~~~a 107 (760)
...+...|...|...|-....|...|..-.+.|....++..|++++.--|.....|..+..... .|+...-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999999999999999999999988777665 46888888899999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q 004339 108 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 150 (760)
Q Consensus 108 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 150 (760)
....... -.....|-........++++..-..+|++.+...
T Consensus 141 ~~~vG~d--F~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 141 KSYVGLD--FLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred HHhcccc--hhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 8876543 1124567667777788899999999999998853
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-08 Score=96.73 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
+-..|.-|+.+|.|++|+.||.+++. ..|.++..+.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia-------------------------------------------~~P~NpV~~~N 136 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA-------------------------------------------VYPHNPVYHIN 136 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc-------------------------------------------cCCCCccchhh
Confidence 45678999999999999999999987 67788899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.|.+|+++..|..|..-+..++.++..+..+|.+.+.+-..+|...+|...++.+|.+.|++.++.-.++.+
T Consensus 137 RA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 137 RALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999988776666555
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00032 Score=69.99 Aligned_cols=297 Identities=14% Similarity=0.078 Sum_probs=211.9
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.|+-..|...-.++-++...+. .+-++..-+..-...|+++.|.+-|+.++.
T Consensus 97 AGda~lARkmt~~~~~llssDq---epLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------------- 148 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQ---EPLIHLLEAQAALLEGDYEDARKKFEAMLD------------------------- 148 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccc---hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-------------------------
Confidence 5788888888888876665542 245666667888888999999999998875
Q ss_pred HHhHHhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
+|.. ...+..|-.--...|..+.|+.+-..+....|....++...-...+..|+++.|+.
T Consensus 149 -------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 149 -------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred -------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 2211 11122222333467999999999999999999999888888888899999999999
Q ss_pred HHHHHHHH---cCCChH-----HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 253 LVNEALKV---NGKYPN-----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 253 ~~~~al~~---~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
+++..... .++-.+ ++...+... -.-+...|...-..++++.|. ....-..-+.. ++..
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pd-lvPaav~AAra-lf~d---------- 276 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPD-LVPAAVVAARA-LFRD---------- 276 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCc-cchHHHHHHHH-HHhc----------
Confidence 98876543 232222 222222222 233588899999999999887 45555555666 7877
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
|+..++-.+++.+-+..|+-. ++.+|....--+.++.-++++-.+.. ..|++....+..+...+.-|+|..
T Consensus 277 --~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 277 --GNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred --cchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHH
Confidence 999999999999999988532 34445544444455555655554432 112788999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
|..--+.+... .+...++..|+.+-... |+-.++..++-+++.- |.+| .|...+.
T Consensus 348 ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A-PrdP-aW~adg~ 403 (531)
T COG3898 348 ARAKAEAAARE---APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA-PRDP-AWTADGV 403 (531)
T ss_pred HHHHHHHHhhh---CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC-CCCC-cccccCc
Confidence 99988888874 34567888888888776 9999999999999864 5444 3444444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=72.03 Aligned_cols=71 Identities=32% Similarity=0.401 Sum_probs=65.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
+..+|+..++|+.|+.++++++..+|.++..|+.+|.++..+|++.+|+..|++++...|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999998887665543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-08 Score=94.30 Aligned_cols=236 Identities=11% Similarity=-0.041 Sum_probs=170.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+-..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.|.+|++...+..|...+..++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH--------
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN-------- 351 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------- 351 (760)
...+|...++.++.+.|. ....--.++.+ ..+.++ .-+.+..|....+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~-~~ELkK~~a~i-----------------~Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~ 237 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK-NIELKKSLARI-----------------NSLRER----KIATKSTPGFTPARQGMIQILPI 237 (536)
T ss_pred hHHHHHHhHHHHHhhCcc-cHHHHHHHHHh-----------------cchHhh----hHHhhcCCCCCccccchhhhccc
Confidence 999999999999999887 33333333332 111111 011111222222221
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 352 -GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 352 -~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
.-|..+...|.+..++.+|..-+.... .+.....+ +..|...-++..|+...-+++.. .+.-.......|.
T Consensus 238 K~~G~~Fsk~~~~~~~i~~~~~~~A~~~-----~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~--~~s~~~~~s~~~~ 309 (536)
T KOG4648|consen 238 KKPGYKFSKKAMRSVPVVDVVSPRATID-----DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP--KPTPMPDTSGPPK 309 (536)
T ss_pred cCcchhhhhhhccccceeEeeccccccC-----ccccCccc-HHHHHHHhhcchhHHHHHHhcCC--CCCcCcccCCCch
Confidence 235566777888888888877665543 22222223 66777778888898888777764 3333333444444
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+---.|...++...++.++.+.|.+....-.+..+
T Consensus 310 A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~ 344 (536)
T KOG4648|consen 310 AETIAKTSKEVKPTKQTAVKVAPAVETPKETETRK 344 (536)
T ss_pred hHHHHhhhhhcCcchhheeeeccccccchhhhhhh
Confidence 55556777889999999999999886665554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=90.15 Aligned_cols=128 Identities=22% Similarity=0.271 Sum_probs=110.9
Q ss_pred CCCchhhhh--HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 11 HEFIFPYYG--LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 11 p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
|+....++. +...+...++++.|+.+|++....+|. +...++.++...++..+|+.++.+++...|.+...+...
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 444444443 334455678999999999999988765 667799999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
+..+. .++++.|+.+.++++.+.|.. ...|+.|+.+|...|+++.|+..++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~-----f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSE-----FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99888 779999999999999999997 899999999999999999999887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-06 Score=87.79 Aligned_cols=125 Identities=13% Similarity=0.100 Sum_probs=111.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
.-.|-.++...++++.|+..|+++.. .+ +.+...
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~-------------------------------------------~~---pev~~~ 205 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE-------------------------------------------RD---PEVAVL 205 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh-------------------------------------------cC---CcHHHH
Confidence 34445556667899999999999876 22 346777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHH
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 282 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 282 (760)
+++++...++..+|+.++.+++...|.+...+...+..+...++++.|+.+.++++...|.....|+.|+.+|...|+++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 004339 283 KAKETFRAASD 293 (760)
Q Consensus 283 ~A~~~~~~al~ 293 (760)
.|+..+..+--
T Consensus 286 ~ALlaLNs~Pm 296 (395)
T PF09295_consen 286 NALLALNSCPM 296 (395)
T ss_pred HHHHHHhcCcC
Confidence 99998885543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0015 Score=65.43 Aligned_cols=281 Identities=15% Similarity=0.021 Sum_probs=201.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 125 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
..|.+-...|+-..|...-.++-.+- .....+.++..-+
T Consensus 89 StGliAagAGda~lARkmt~~~~~ll-----------------------------------------ssDqepLIhlLeA 127 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLL-----------------------------------------SSDQEPLIHLLEA 127 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhh-----------------------------------------hccchHHHHHHHH
Confidence 34667777889999998888775420 1112455677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVD-AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 283 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 283 (760)
..-...|+++.|.+-|+.++. +|..-. .+..|-.-....|..+.|+.+...+....|.-+-++...-...+..|+|+.
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 888889999999999999886 443221 122222333578999999999999999999999988888888899999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 363 (760)
|+++........--....+-...+.+.-....... ..+...|...-..++++.|+...+...-+..|+..|+.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-------dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-------DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-------cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence 99999776553211111121122222011110000 15688899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-cCCCcHHHHHHHHHHHHHhccHHHHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~ 442 (760)
.++-.+++.+.+..|+ |.+ +.+|....--+.++.-++++-.+- -.|++.+..+.++..-+..|++..|.
T Consensus 280 rKg~~ilE~aWK~ePH------P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 280 RKGSKILETAWKAEPH------PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred hhhhhHHHHHHhcCCC------hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 9999999999999872 443 344444444455666666554432 26778999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHhhHHHH
Q 004339 443 KSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~la~~ 465 (760)
..-+.+....|... ++.-|+-|
T Consensus 350 a~Aeaa~r~~pres-~~lLlAdI 371 (531)
T COG3898 350 AKAEAAAREAPRES-AYLLLADI 371 (531)
T ss_pred HHHHHHhhhCchhh-HHHHHHHH
Confidence 99999999998653 33334443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00074 Score=68.67 Aligned_cols=429 Identities=10% Similarity=0.049 Sum_probs=245.0
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
..|+.+|+++..||.+.+.+-.+|.+++-.+.|++.....|--+.+|......-+..++|..-..+|-+++...- +.+.
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldL 111 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDL 111 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhH
Confidence 457889999999999999999999999999999999998888888888777766667888888888888886543 3444
Q ss_pred HHHHHHHHc-cC-C-HhHHH----HHHHHHHH---HHHhcCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q 004339 85 FIDLGELLI-SS-D-TGAAL----DAFKTART---LLKKAGEEVPIEVLNNIGVIHFE---------KGEFESAHQSFKD 145 (760)
Q Consensus 85 ~~~la~~~~-~~-~-~~~A~----~~~~~al~---~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~ 145 (760)
|..+-.... .+ . ..++. +.|+-++. ..|.. ...|...+..+.. +.+.+.-...|.+
T Consensus 112 W~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s-----~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 112 WMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQS-----ENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred HHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccc-----cchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 443322211 11 0 11222 22332222 23333 4566666655433 3456667777888
Q ss_pred Hhcccch-hhhhcccchhhh--hhhh--------hHHHHHHhHHhhhhhhccCCCcc-CCcchH-----------HHHHH
Q 004339 146 ALGDGIW-LTLLDSKTKTYV--IDAS--------ASMLQFKDMQLFHRFENDGNHVE-LPWNKV-----------TVLFN 202 (760)
Q Consensus 146 al~~~p~-~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~-----------~~~~~ 202 (760)
++..... ..-+......+. ++.. .+.+-...-..++.+.....-+. .+|.+. .-|.+
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 8765321 000111000000 0000 00000111112222221111111 111111 11222
Q ss_pred HHHHHHH-----cCC-HH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 203 LARLLEQ-----IHD-TV-AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 203 la~~~~~-----~g~-~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
....-.. .|+ .. .---.|++++...|-.+..|+.....+...++-+.|+.....++...|. +...++.+|
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~y 343 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYY 343 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHH
Confidence 2221111 111 22 2223466777777888888998888888899999998888777665554 667777777
Q ss_pred hhcCCHHHHHHHHHHhhh-------cCC-----C--C----ChHHH------HHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 276 LKNDDWVKAKETFRAASD-------ATD-----G--K----DSYAT------LSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~-------~~~-----~--~----~~~~~------~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
...++-+....+|.+++. ... + + ....+ +.++.|++...++.. .-...
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~--------~Gl~a 415 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK--------RGLEA 415 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH--------hhHHH
Confidence 766665555555554433 100 0 0 11111 111111122221111 44677
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 332 AKELYTRVIVQHTSNLYAANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 332 A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
|..+|-++-+..--...++..-|.+ +...|++.-|..+|.-.+...| +.+......-..++..++-..|..+|+
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~-----d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFP-----DSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC-----CchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 7777777655431222223222322 3467889999999999888887 666666667777888899999999999
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+++.......-..+|-.+-..-..-|+...+...=++...+.|..
T Consensus 491 tsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 491 TSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 888865333335556555555566788888887778888888765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.8e-06 Score=71.34 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 424 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 424 (760)
.+..++.-|...+..|+|..|+..|+.+....|.+. -...+.+.||.+|+..|+|+.|+..+++.+.+.|.+++ ..+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~--ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE--YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 455778888888999999999999999999988443 34678899999999999999999999999998766555 788
Q ss_pred HHHHHHHHHHhcc---------------HHHHHHHHHHHHHhCCCChhH
Q 004339 425 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 425 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 458 (760)
++..|.+++.+.. ...|...|++.+...|++..+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899999998876 788999999999999987543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-06 Score=71.85 Aligned_cols=96 Identities=20% Similarity=0.105 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---ChHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK---YPNALSML 271 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 271 (760)
.++|.+|.++-..|+.++|+.+|++++..... ...+++.+|..+..+|++++|+.+++.++..+|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 57899999999999999999999999987543 3568999999999999999999999999999998 77888999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhh
Q 004339 272 GDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~ 293 (760)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999877664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-06 Score=72.02 Aligned_cols=87 Identities=14% Similarity=0.006 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
++..++.-|...+..|+|..|+..|+.+....| ..+-...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP----------------------------------------~g~ya~q 48 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP----------------------------------------FGEYAEQ 48 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----------------------------------------CCcccHH
Confidence 455666666666666666666666666655433 3334455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHcC
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYV---DAYLRLAAIAKARN 245 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g 245 (760)
+.+.++.+|+..++++.|+..+++.++++|.++ .+++..|.+++...
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666443 34555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.4e-06 Score=79.74 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
.-.|..|.-++..|+|..|...|...++..| ..+..+.++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP----------------------------------------~s~~~~nA~ 181 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYP----------------------------------------NSTYTPNAY 181 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------------------------------CCcccchhH
Confidence 4478899999999999999999999998665 445567899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
|+||.+++.+|+|+.|...|..+++.+|. -+++++.||.+...+|+.++|..+|.++++.+|+...+....
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999988764 568899999999999999999999999999999987765543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-07 Score=68.79 Aligned_cols=66 Identities=23% Similarity=0.164 Sum_probs=52.4
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
...|++++|+.+|++++..+|++..+++.+|.++...|++++|..++.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456788888888888888888888888888888888888888888888888888887777766664
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-05 Score=68.34 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV-QHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~ 359 (760)
.+....-..+.+...| .....+.|++. .... |++.+|...|.+++. +..+++..+.+++...+.
T Consensus 72 P~R~~Rea~~~~~~Ap--Tvqnr~rLa~a-l~el------------Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 72 PERHLREATEELAIAP--TVQNRYRLANA-LAEL------------GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred hhHHHHHHHHHHhhch--hHHHHHHHHHH-HHHh------------hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh
Confidence 3333333444444444 23344566666 6666 888888888887765 456677788888888888
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
.+++..|...++...+..|.. ..|+..+.+|.+|..+|.+.+|...|+.++..+ +.+......+..+.++|+..
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~---r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAF---RSPDGHLLFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLR 210 (251)
T ss_pred hccHHHHHHHHHHHhhcCCcc---CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchh
Confidence 888888888888888887733 456777888888888888888888888888854 55667777788888888877
Q ss_pred HHHHHHHHHH
Q 004339 440 DCKKSLLRAI 449 (760)
Q Consensus 440 ~A~~~~~~al 449 (760)
+|..-+....
T Consensus 211 ea~aq~~~v~ 220 (251)
T COG4700 211 EANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHH
Confidence 7766555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00033 Score=66.18 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAAS 292 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 292 (760)
+..+..+++-+. .+.+.++.++.-.+.|.-++..+.++++.+ |..+.....+|.+.++.|+.+.|..+|+.+-
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444445544332 345566666677777777777777777766 5566677777777777777777777777544
Q ss_pred hcCC-----CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 293 DATD-----GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 293 ~~~~-----~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
+... .....+..+.+.+ |... +++..|...|.+++..+|.++.+.++.|.|+.-.|+...|+
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 3211 1133444555555 6666 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 004339 368 DLFTQVQEAASGS 380 (760)
Q Consensus 368 ~~~~~al~~~p~~ 380 (760)
+.+..++...|+.
T Consensus 307 K~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 307 KQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHhccCCcc
Confidence 9999999998854
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-07 Score=70.37 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=56.5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
....++.++|.+|..+|+|++|+.+|++++......+ + +.++.++|.+|..+|++++|+.+|++++.+.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5677889999999999999999999999998742211 1 6778899999999999999999999998763
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-06 Score=76.47 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+-.-|.-++..|+|.+|..-|..++.+.|..........|.+.|.++++++.+..|+..+.+++.+ .|....++...|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRA 175 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRA 175 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHH
Confidence 334577888999999999999999999984332234567889999999999999999999999997 778888999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+|.++..|+.|+..|.+.++++|....++-.++.+
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999988777666554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.8e-06 Score=74.93 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+..+-.-|.-++..|.|.+|..-|..+|..||... .......
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~--------------------------------------~e~rsIl 136 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS--------------------------------------TEERSIL 136 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc--------------------------------------HHHHHHH
Confidence 34455668889999999999999999999887321 1123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
|.+.|.++..++.++.|+..+.+++.++|.+..++.+.|.+|.+...|+.|+..|.+++..+|....+.-.++.+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999999999999999999887766655554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.6e-05 Score=66.64 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=126.8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
-+++..+.-..+.+.+.|. ..-.+.||..+...|++.+|...|.+++.-
T Consensus 70 ldP~R~~Rea~~~~~~ApT------vqnr~rLa~al~elGr~~EA~~hy~qalsG------------------------- 118 (251)
T COG4700 70 LDPERHLREATEELAIAPT------VQNRYRLANALAELGRYHEAVPHYQQALSG------------------------- 118 (251)
T ss_pred cChhHHHHHHHHHHhhchh------HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------------------------
Confidence 3666666666677777776 477889999999999999999999999862
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHcCCHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--YVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
....++..+..+++..+..+++..|...++.+.+.+|. .++..+.+|..+...|.+.+|..
T Consensus 119 -----------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 119 -----------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred -----------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 45568889999999999999999999999999998873 56778899999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
.|+.++...|. +.+....+..+..+|+..+|...+..+.+
T Consensus 182 afe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 182 AFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999998875 67778888999999988888776655544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-05 Score=80.73 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=91.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 433 (760)
|..+...|+...|+.++..++...|. .......+||.+.+..|-...|-.++.+++.+ ....+-.++.+|++|+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPL----QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--NSSEPLTFLSLGNAYL 687 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChh----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cccCchHHHhcchhHH
Confidence 44444789999999999999999884 23345789999999999999999999999997 3566889999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 434 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 434 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+.+.+.|++.|+.|+.+.|+++.+...|-.+
T Consensus 688 ~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999999887766554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-06 Score=66.04 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=57.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
..+|...++++.|+.+++.++..+|.++..+..+|.++...|++.+|+..|++++...|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5677888888888888888888888888888888888888888888888888888888888776665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.015 Score=66.12 Aligned_cols=394 Identities=17% Similarity=0.131 Sum_probs=219.0
Q ss_pred chhhhhHHHHHH-HcCCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cH-
Q 004339 14 IFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYPD--N----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DA- 82 (760)
Q Consensus 14 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~- 82 (760)
+.+++.+|.+++ ...+++.|..++.+++.+... . ..+.+.++.++.+.+... |+..+.+++..... ..
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 456788888887 678888888888888776533 2 234556677777777666 88888888765433 11
Q ss_pred HHHHHHH--HHHcc-CCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 83 QAFIDLG--ELLIS-SDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 83 ~~~~~la--~~~~~-~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
...+.+. .++.. +++..|+..++.........+++. ...+....+.++...+....++..+..+.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~------- 210 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQAR------- 210 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-------
Confidence 1122222 22222 588888888888877654322111 122334446666677777888888877754210
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHH---cC--
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVAASVLYRLI---LFK---YQ-- 228 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~~---l~~---~p-- 228 (760)
.+ ...... .+....++..+-. ++...|++..+...+..+ +.. .|
T Consensus 211 -----------------------~~-q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 211 -----------------------SL-QLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred -----------------------hc-ccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 00 001111 2223334444333 445567766665544433 221 11
Q ss_pred -C---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----------C
Q 004339 229 -D---------------------------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----------Y 264 (760)
Q Consensus 229 -~---------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------~ 264 (760)
. ..-+|+.-|......+..+.|..++.+++..-.. .
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~ 344 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE 344 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 0 0112333344456667666888888777754211 0
Q ss_pred ----------------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC---C-----CChHHHHHHHHHHHHHHHhhhhc
Q 004339 265 ----------------PNALSMLGDLELKNDDWVKAKETFRAASDATD---G-----KDSYATLSLGNWNYFAALRNEKR 320 (760)
Q Consensus 265 ----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~-----~~~~~~~~lg~~~y~~~~~~~~~ 320 (760)
..+....+.+.+..++|..|...+..+..... . ..+..++..|.. +...
T Consensus 345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~-~q~~------ 417 (608)
T PF10345_consen 345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY-YQST------ 417 (608)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH-HHHc------
Confidence 01344667777888999999999887776421 1 135666677776 6666
Q ss_pred CchHHhhcHHHHHHHHH--------HHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH-HhcCCC-C-CCch
Q 004339 321 APKLEATHLEKAKELYT--------RVIVQHTSN---LYAANGAGVVLAEKGQFDVSKDLFTQVQE-AASGSV-F-VQMP 386 (760)
Q Consensus 321 ~~~~~~~~~~~A~~~~~--------~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~-~-~~~~ 386 (760)
|+++.|...|. .+....+.+ ..+..++..++...+.-......+..++. +.|... . ..+.
T Consensus 418 ------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~ 491 (608)
T PF10345_consen 418 ------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYN 491 (608)
T ss_pred ------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHH
Confidence 99999999998 444444443 23555667777655543332212233332 333110 0 0111
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhhh-cCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 387 DVWINLAHVYFA---QGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 387 ~~~~~la~~~~~---~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+..+...-+. .-.+.++...+..+++.. ....+ ..++..++..++ .|+..+.......++.+.+..
T Consensus 492 ~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 492 RTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 222222111121 123458888888888875 22233 445667777777 788888777766677665443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00031 Score=78.28 Aligned_cols=271 Identities=18% Similarity=0.170 Sum_probs=187.6
Q ss_pred chHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALK 259 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 259 (760)
.+..+.+.+|.+|..- .+.+.|+.+|..+... .-.++.+.+.+|.+|.... ++..|+.+|.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4667788888887764 6899999999999761 1125567889999998753 67789999998876
Q ss_pred HcCCChHHHHHHHHHHhhcC---CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHH
Q 004339 260 VNGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 336 (760)
Q Consensus 260 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 336 (760)
. .++.+.+.+|.++.... ++..|..+|..+.... ...+.+.++.+ |....... .+...|..+|
T Consensus 322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G~gv~--------r~~~~A~~~~ 387 (552)
T KOG1550|consen 322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELGLGVE--------RNLELAFAYY 387 (552)
T ss_pred c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhCCCcC--------CCHHHHHHHH
Confidence 5 46778888999887765 5789999999998764 67788888888 65541111 5889999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 004339 337 TRVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQN 411 (760)
Q Consensus 337 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 411 (760)
.++.... ++.+...++.++... +.+..+...+.......-... ..+...+........... +...+...+.+
T Consensus 388 k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~-q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 388 KKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA-QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH-hhHHHHHHHhccccccccccccchhHHHHHHHH
Confidence 9999987 566666666666533 888887777766665532000 011111111111111111 55666777766
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHH
Q 004339 412 CLRKFYYNTDAQILLYLARTHYEA----EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRST 487 (760)
Q Consensus 412 al~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a 487 (760)
+.. ..++.+...||.+|+.- .++..|...|.+|.... ....+++|.++.. |. ..
T Consensus 465 a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~-g~--------------g~ 522 (552)
T KOG1550|consen 465 AAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEH-GE--------------GI 522 (552)
T ss_pred HHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhc-Cc--------------Cc
Confidence 655 36788999999999875 45899999999998887 8899999997643 21 11
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 004339 488 VAELENAVRVFSHLSAAS 505 (760)
Q Consensus 488 ~~~l~~A~~~~~~l~~~~ 505 (760)
.. +..|.+++...+..+
T Consensus 523 ~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 523 KV-LHLAKRYYDQASEED 539 (552)
T ss_pred ch-hHHHHHHHHHHHhcC
Confidence 22 566667777666654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.9e-06 Score=87.58 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=64.2
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET---LKALGHIYVQLGQIEKAQELLRKAAKID 78 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 78 (760)
..+|+++.+++++|.+|+..|+|++|+.+|++++.++|++..+ |+++|.+|..+|++++|+.+|++++.+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999998854 9999999999999999999999999873
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=69.99 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 344 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 344 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
|.-..++.++|.+|...|++++|+.+|++++.+.. +...+..+.++.++|.++..+|++++|+.+|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34467899999999999999999999999998732 22222447789999999999999999999999999864
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.011 Score=63.32 Aligned_cols=321 Identities=10% Similarity=0.084 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 004339 64 IEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI-HFEKGEFESAHQ 141 (760)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~ 141 (760)
...+...|...+...|.....|...|..-. .|....++..|++++.-.|-+ ..+|..+-.. -...|+...-..
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-----vdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-----VDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHhccCCCHHHHHH
Confidence 466777788888889999999999998866 789999999999999999975 6777655443 334577778778
Q ss_pred HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 142 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 142 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
.|++|..... .+-.....|-.+......++++..-..+|.
T Consensus 136 ~fe~A~~~vG----------------------------------------~dF~S~~lWdkyie~en~qks~k~v~~iye 175 (577)
T KOG1258|consen 136 LFERAKSYVG----------------------------------------LDFLSDPLWDKYIEFENGQKSWKRVANIYE 175 (577)
T ss_pred HHHHHHHhcc----------------------------------------cchhccHHHHHHHHHHhccccHHHHHHHHH
Confidence 8888876321 111122333333344455556666666666
Q ss_pred HHHHHcCCcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHH-------------------H--cCC--ChHHH----
Q 004339 222 LILFKYQDYVDAYLRLAAIAKA------RNNLQLSIELVNEALK-------------------V--NGK--YPNAL---- 268 (760)
Q Consensus 222 ~~l~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~-------------------~--~p~--~~~~~---- 268 (760)
++++..-.....++..-.-+.. ....++++..-..... . .|. .....
T Consensus 176 RileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~ 255 (577)
T KOG1258|consen 176 RILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILK 255 (577)
T ss_pred HHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHH
Confidence 6665322111111111000000 1111111111111110 0 000 00011
Q ss_pred ---HHHHHHHhhcCCHHHHHHHHHHhhhcCC-CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 269 ---SMLGDLELKNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 269 ---~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
...-.++.....+...+-.|+..+...- ...+.....+.++.++.-. ....|+++...-.|++++--..
T Consensus 256 ~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf-------~i~~g~~~~~~~l~ercli~cA 328 (577)
T KOG1258|consen 256 RIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF-------EITLGDFSRVFILFERCLIPCA 328 (577)
T ss_pred HHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh-------hhhcccHHHHHHHHHHHHhHHh
Confidence 0111122222334444444444443210 0011112222222111100 0011666667777776666666
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.....|...+......|+..-|...+..+.++.- +..+.+.+.-+.+--..|++..|..+|+++...+ |+...+
T Consensus 329 ~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~----k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~ 402 (577)
T KOG1258|consen 329 LYDEFWIKYARWMESSGDVSLANNVLARACKIHV----KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEV 402 (577)
T ss_pred hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC----CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cchhhh
Confidence 6666666666666666666666666666655542 1445666666666666666666666666666653 444555
Q ss_pred HHHHHHHHHHhccHHHHH
Q 004339 425 LLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~ 442 (760)
-..........|+.+.+.
T Consensus 403 ~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 403 VLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHhHHHHhcchhhhh
Confidence 444455555555555555
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.019 Score=65.36 Aligned_cols=344 Identities=14% Similarity=0.070 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHCCC----CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCC--CcHH----HHHHHHHHHccCCHh
Q 004339 30 FRSALTNFEKVLEIYPD----NCETLKALGHIYV-QLGQIEKAQELLRKAAKIDP--RDAQ----AFIDLGELLISSDTG 98 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--~~~~----~~~~la~~~~~~~~~ 98 (760)
...|+.+++-+++..+- .+.+++.+|.+++ ...+++.|..++.+++.+.. +..+ +.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35678888888853222 3568888999887 67899999999999987763 3332 344567777755555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhH
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNI-GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 177 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (760)
.|+..+.+.++.....+......++..+ ...+...+++..|+..++.+.....
T Consensus 117 ~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~-------------------------- 170 (608)
T PF10345_consen 117 AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN-------------------------- 170 (608)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh--------------------------
Confidence 5999999999887764322122222222 3333334799999999998876310
Q ss_pred HhhhhhhccCCCccCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----------CCcHHHHHHHHH--HHHHc
Q 004339 178 QLFHRFENDGNHVELPW-NKVTVLFNLARLLEQIHDTVAASVLYRLILFKY----------QDYVDAYLRLAA--IAKAR 244 (760)
Q Consensus 178 ~~~~~l~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------p~~~~~~~~la~--~~~~~ 244 (760)
. ..+| ....+.+..+.++...+....++.....+.... +....+|..+-. ++...
T Consensus 171 -----------~-~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~ 238 (608)
T PF10345_consen 171 -----------Q-RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQ 238 (608)
T ss_pred -----------h-cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 0 0111 122344455677777788888888888775322 223445544443 34567
Q ss_pred CCHHHHHHHHHHH---HHHcCCC--------------------------h-------------HHHHHHHHHHhhcCCHH
Q 004339 245 NNLQLSIELVNEA---LKVNGKY--------------------------P-------------NALSMLGDLELKNDDWV 282 (760)
Q Consensus 245 g~~~~A~~~~~~a---l~~~p~~--------------------------~-------------~~~~~la~~~~~~g~~~ 282 (760)
|++..+...++.+ +....+. + -++..-|...+..+..+
T Consensus 239 ~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ 318 (608)
T PF10345_consen 239 GDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMD 318 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCch
Confidence 7776666555443 2221111 0 02223344444555555
Q ss_pred HHHHHHHHhhhcCCC-------CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 283 KAKETFRAASDATDG-------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 283 ~A~~~~~~al~~~~~-------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
.|.+++.+++..... ...... .....-...+.. + .......++.
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl-----------------------~~~~~~~~~~~~-l-----~~~~~~y~~~ 369 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESL-----------------------SEASERIQWLRY-L-----QCYLLFYQIW 369 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCH-----------------------HHHHHhHHHHHH-H-----HHHHHHHHHH
Confidence 666666666553211 000000 000000000100 0 1235566788
Q ss_pred HHHHcCChHHHHHHHHHHHHHhcCC----CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhhcCCCc--H
Q 004339 356 VLAEKGQFDVSKDLFTQVQEAASGS----VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL-------RKFYYNTD--A 422 (760)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~~~~~~--~ 422 (760)
+.+-.|++..|...+..+....... .....+.+++..|..+...|+.+.|..+|.+.+ .......+ .
T Consensus 370 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~i 449 (608)
T PF10345_consen 370 CNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYI 449 (608)
T ss_pred HHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHH
Confidence 8889999999999998887764211 011247889999999999999999999998322 21111112 3
Q ss_pred HHHHHHHHHHHHhccHHH
Q 004339 423 QILLYLARTHYEAEQWQD 440 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~ 440 (760)
-+..++..++...+....
T Consensus 450 la~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 450 LAALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHHhHhhcccch
Confidence 344456666666555433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.9e-05 Score=63.04 Aligned_cols=101 Identities=19% Similarity=0.107 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc--HHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLY 427 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 427 (760)
+-.-|..+...|+.+.|++.|.+++.+.| ..+.+|.+.+..+.-+|+.++|+..+.+++.+...... ..++..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 34467888899999999999999999999 88999999999999999999999999999998533322 677888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
.|.+|...|+-+.|...|+.|-++....
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999998886543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00043 Score=64.36 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=81.0
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-----H
Q 004339 350 ANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----A 422 (760)
Q Consensus 350 ~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 422 (760)
+..+|.+|.. +.++++|+.+|+++-+...+.... .....++..|..-..+++|.+|+.+|+++....-+++- .
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 3457777764 488999999999998877532111 12345667777888899999999999998875322221 4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
..++.-|.|++-..+.-.+...+++...++|.....+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 4566778888888999999999999999999875543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00086 Score=74.82 Aligned_cols=277 Identities=21% Similarity=0.211 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHccC----
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELLRKAAKI-----DPRDAQAFIDLGELLISS---- 95 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~---- 95 (760)
...|..+|+.+... .+..+.+.+|.||..- .+.+.|+.+|..+... .-.++.+.+.+|.+|..|
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887664 5788888999998875 5899999999998761 112566788899998854
Q ss_pred --CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 96 --DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 96 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
++..|+.+|.++..+.. +.+.+.+|.+|.... ++..|..+|..|...
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------------------- 357 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------------------- 357 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------------------
Confidence 46778888888877643 578889999988766 678999999998653
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-C
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI----HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-N 245 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g 245 (760)
..+.+.+.+|.+|..- .+...|..+|.++...+ .+.+...++.++... +
T Consensus 358 ------------------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 358 ------------------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred ------------------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 4678888999888753 57889999999999877 445555555554332 7
Q ss_pred CHHHHHHHHHHHHHHcCCChH---HH-HHHHHHHhhc----CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhh
Q 004339 246 NLQLSIELVNEALKVNGKYPN---AL-SMLGDLELKN----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 317 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~---~~-~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~ 317 (760)
.+..+...+.......-..+. ++ .......... .+...+...+.++.... +..+.+.+|.+ |+.. ..
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~-y~~g-~g 486 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDY-YYYG-LG 486 (552)
T ss_pred cccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcce-eeec-CC
Confidence 777776666555443222211 11 1111111111 14455555555554432 66777788888 5543 11
Q ss_pred hhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhc
Q 004339 318 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 318 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 378 (760)
.. .++..|...|..+.... ..+.+++|.++.. .. +..|..+|.++.....
T Consensus 487 ~~-------~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 487 TG-------RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDS 540 (552)
T ss_pred CC-------CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCc
Confidence 11 56888999999888776 8888899998873 23 6888888888887653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0019 Score=70.39 Aligned_cols=192 Identities=16% Similarity=0.070 Sum_probs=131.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
.|.-++.+-|. ....+..+.--.|+-+.++..+..+.....-..+.+ .+..+.|...+...-.... .......|
T Consensus 179 ~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la--~L~LL~y~~~~~~~~~~~~-~~~~~~~a 252 (468)
T PF10300_consen 179 LFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA--ALVLLWYHLVVPSFLGIDG-EDVPLEEA 252 (468)
T ss_pred HHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH--HHHHHHHHHHHHHHcCCcc-cCCCHHHH
Confidence 44455555443 233333334456899999999999877432222222 2222212222111111111 23788999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..++.......|+....++..|.++...|+.+.|+..|++++..... ...-..-.++.+|+++.-+++|.+|..+|...
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998853320 00022457889999999999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHhC
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQW-------QDCKKSLLRAIHLA 452 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 452 (760)
++.. .-......|..|-|+...|+. ++|..+|.++-.+.
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9852 222366667888999999999 77777777765543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-05 Score=73.75 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=104.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+-..|..|+....|..|+.+|.++|.++|..+..|.+.+.|+++..+++.+.....++++++|+.+.+++.+|.++. ..
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 44567888888999999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 141 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 141 (760)
.|+.|+..+.++..+......+.-..++..|-.+-...-...++..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 9999999999999887766544445666666555444444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0006 Score=64.50 Aligned_cols=207 Identities=10% Similarity=0.067 Sum_probs=140.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-------------CCc------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-------------QDY------VDAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
.....|...-.++..+..+++|..-+...-..+ |+. .......|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 345566666677777777777776655543332 110 1223445666677788777765444
Q ss_pred HHHH-------H-----cCCC---------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHH
Q 004339 256 EALK-------V-----NGKY---------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314 (760)
Q Consensus 256 ~al~-------~-----~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~ 314 (760)
.... . .|.+ ..+.+.+..++...|.|.-....+.+++..+|..++.....||.+ -++.
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~-~MQ~ 225 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI-SMQI 225 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH-HHhc
Confidence 3322 1 1111 125567788888889999999999999998877788888888888 7777
Q ss_pred HhhhhcCchHHhhcHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHH
Q 004339 315 LRNEKRAPKLEATHLEKAKELYTRVIVQ------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388 (760)
Q Consensus 315 ~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 388 (760)
|+.+.|..+|+.+-+. -..+..+..+.+.++.-.+++..|...|.+++..+| .++.+
T Consensus 226 ------------GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-----~~~~a 288 (366)
T KOG2796|consen 226 ------------GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-----RNAVA 288 (366)
T ss_pred ------------ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-----Cchhh
Confidence 8888888888854332 123444566667777777777777777777777776 66777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
..+.|.|++..|+...|++.++.++...|.+
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 7777777777777777777777777764433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0028 Score=68.21 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=39.1
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004339 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 74 (760)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 74 (760)
+..|+|+.|...++. +...|+....|..++.+.+..|+.--|..+|..+
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 577899999877665 5678888888999999888888887777777543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0002 Score=60.01 Aligned_cols=99 Identities=21% Similarity=0.131 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh----HHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP----NALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~ 274 (760)
.+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-.|+.++|+..+++++++..... .++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4455677888899999999999999999999999999999999999999999999999999865433 377888999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCC
Q 004339 275 ELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
|...|+.+.|..-|..+..+..+
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999988887643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=82.88 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=64.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 342 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD---VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
.+|+++.+++++|.+|...|+|++|+.+|+++++++| +++. +|+++|.+|..+|++++|+..|++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999 6664 5999999999999999999999999996
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=73.78 Aligned_cols=139 Identities=10% Similarity=0.153 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhcC
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 379 (760)
.+|+.+.++ ..+. +..+.|..+|.+++...+....+|...|.+... .++...|..+|+.+++..|
T Consensus 2 ~v~i~~m~~-~~r~------------~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~- 67 (280)
T PF05843_consen 2 LVWIQYMRF-MRRT------------EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP- 67 (280)
T ss_dssp HHHHHHHHH-HHHH------------HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHH-HHHh------------CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-
Confidence 456666666 5555 779999999999997666678899999999666 5666669999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
.++.+|......+...|+.+.|..+|++++...+... ...+|......-...|+.+....+..++.+..|.+..
T Consensus 68 ----~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 68 ----SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp ----T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred ----CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8899999999999999999999999999999753333 3568888888888999999999999999999998544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.014 Score=65.43 Aligned_cols=313 Identities=12% Similarity=0.102 Sum_probs=198.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTG 98 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~ 98 (760)
+|.+.+..+-|++|..+|.+. .-+..+...| .-..++.+.|.++.+++ +.+..|..+|.+.. .+...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 567778888888888888764 2233333322 23446777787777665 46788888888877 45888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
+|+..|-++-. +..|.....+..+.|+|++-+.++.-+.+.... ....+.++... ....
T Consensus 1122 dAieSyikadD----------ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-----~~id~eLi~Ay------Akt~ 1180 (1666)
T KOG0985|consen 1122 DAIESYIKADD----------PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-----PYIDSELIFAY------AKTN 1180 (1666)
T ss_pred HHHHHHHhcCC----------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-----ccchHHHHHHH------HHhc
Confidence 89888876522 567778888888889999988888777653210 01111110000 0000
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
....+..+. ..|+. .-.-..|.-++..|.|+.|.-+|.. +..|..|+..+..+|.|..|....+++
T Consensus 1181 rl~elE~fi----~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA- 1246 (1666)
T KOG0985|consen 1181 RLTELEEFI----AGPNV-ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA- 1246 (1666)
T ss_pred hHHHHHHHh----cCCCc-hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 000111100 23333 3345677777888888888777753 445778888888999999888887766
Q ss_pred HHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH
Q 004339 259 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338 (760)
Q Consensus 259 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 338 (760)
++...|-..+..+...+.+.-|.-+=-.++- ...-+-.+... |... |.|++-+.+++.
T Consensus 1247 ----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iiv-----hadeLeeli~~-Yq~r------------GyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1247 ----NSTKTWKEVCFACVDKEEFRLAQICGLNIIV-----HADELEELIEY-YQDR------------GYFEELISLLEA 1304 (1666)
T ss_pred ----cchhHHHHHHHHHhchhhhhHHHhcCceEEE-----ehHhHHHHHHH-HHhc------------CcHHHHHHHHHh
Confidence 4566788888777777777766554332222 22233344454 5555 999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---------HHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 339 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ---------VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 339 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
++.+...+...+..||.+|.+-. +++-.+.++- ++... +....|..+..+|.+-..|+.|.-.
T Consensus 1305 ~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~------eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAA------EQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHH------HHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 98887777777888888887543 3333333322 22222 3466788888888888888777543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.014 Score=65.32 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
.+.+|..+|.+..+.|...+|+..|-++ +++..|.....+..+.|.|++-+.++.-+-+... .+.+-..|..+|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence 3455666666666666666666655443 3445555555556666666666655554443221 122222333334
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
.+.++..+-..++ ..| +..-.-..|.- ++.. +.|+.|.-+|.. ..-|..|+.
T Consensus 1177 Akt~rl~elE~fi-----~gp--N~A~i~~vGdr-cf~~------------~~y~aAkl~y~~--------vSN~a~La~ 1228 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGP--NVANIQQVGDR-CFEE------------KMYEAAKLLYSN--------VSNFAKLAS 1228 (1666)
T ss_pred HHhchHHHHHHHh-----cCC--CchhHHHHhHH-Hhhh------------hhhHHHHHHHHH--------hhhHHHHHH
Confidence 4444433322222 111 22222334444 4444 666666666643 334556677
Q ss_pred HHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh
Q 004339 356 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435 (760)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 435 (760)
.+..+|.|..|.+..+++ ++..+|-..+.++...+.|.-|.-+= +.. --+++-+-.|...|...
T Consensus 1229 TLV~LgeyQ~AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiCG---L~i---ivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQICG---LNI---IVHADELEELIEYYQDR 1292 (1666)
T ss_pred HHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhcC---ceE---EEehHhHHHHHHHHHhc
Confidence 777777777777666655 23344444444444444443332110 000 01133344455555555
Q ss_pred ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 436 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 436 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
|-+++-+..++.++-+...+...+..||.+|.+
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00044 Score=64.25 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=117.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHccCCHhHH
Q 004339 27 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLISSDTGAA 100 (760)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~A 100 (760)
.+.|++|..+|.++-. +|...+++..|-..|.++-... .+....|...+.||...++.+|
T Consensus 27 ~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHH
Confidence 3478888888877643 2222233333333343333221 2235567777888888899999
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 101 LDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 101 ~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
+.++.+++.+....+.-. .+..+..+|.+|..- .++++|+.+|+++-....
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk--------------------------- 145 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK--------------------------- 145 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc---------------------------
Confidence 999999999987754211 234456778887665 889999999998865210
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH-------HHHHHHHHHHHcCCHHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD-------AYLRLAAIAKARNNLQLSI 251 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~ 251 (760)
.-+........+...+..-..+++|.+|+.+|+++....-++.. .++.-|.|++-..+.-.+.
T Consensus 146 ----------~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 146 ----------GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred ----------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 00011122345666777777888899999998888765544432 2344455556556666666
Q ss_pred HHHHHHHHHcCCChH
Q 004339 252 ELVNEALKVNGKYPN 266 (760)
Q Consensus 252 ~~~~~al~~~p~~~~ 266 (760)
..+++...++|....
T Consensus 216 ~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 216 RALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHhcCCcccc
Confidence 666666777775443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=65.25 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 407 (760)
-|+.|.+.++.....+|.++.++++-|.++..+.++... ++. ..-+.+|+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g-------------------~es----------~~miedAis 56 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQG-------------------PES----------KKMIEDAIS 56 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-H-------------------HHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCc-------------------chH----------HHHHHHHHH
Confidence 355555666665666666666666555555544332110 000 012566777
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 408 MYQNCLRKFYYNTDAQILLYLARTHYEAEQ-----------WQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 408 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
-|+.|+.+ +|+...+++++|.+|...+. |++|..+|++|+..+|++...+..|.++
T Consensus 57 K~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 57 KFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 77777776 77778899999999887654 7789999999999999997666555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0014 Score=61.56 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=132.6
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCc-H
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKID-----PRD-A 82 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-~ 82 (760)
..|..-+.+|....+|++|..++.++++-..+| +.++-..|.+...+..+.++..+|+++..+. |+. .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 345666777778889999999999998655443 3345556666677788899999999988763 332 2
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.++-.-|.++..-+++.|+.+|++++.+....... .....+...+.++.+...|.+|-..|.+-..+..
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~---------- 181 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD---------- 181 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH----------
Confidence 33444555666778999999999999887664321 1345667778888888889888888776543210
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CCcHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY----QDYVDAYLRL 237 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l 237 (760)
. ....+.....+.....+|....+|..|..+|+...++. |....+.-+|
T Consensus 182 --------------------~-------~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 182 --------------------K-------CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred --------------------H-------HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 0 01223334456666667777778888888888866543 3344444444
Q ss_pred HHHHHHcCCHHHHHHHH
Q 004339 238 AAIAKARNNLQLSIELV 254 (760)
Q Consensus 238 a~~~~~~g~~~~A~~~~ 254 (760)
-.. +..|+.++...++
T Consensus 235 L~a-yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTA-YDEGDIEEIKKVL 250 (308)
T ss_pred HHH-hccCCHHHHHHHH
Confidence 433 3566666655544
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.6e-05 Score=69.11 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=78.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
..|..|+.+|.++|.++|..+..|.+.+.|+++..+++.+.....+++++.| +.+..++.+|.++.....|+.||
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~-----N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-----NLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-----HHHHHHHHHHHHHHhhccccHHH
Confidence 8899999999999999999999999999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHhhh
Q 004339 407 KMYQNCLRKF 416 (760)
Q Consensus 407 ~~~~~al~~~ 416 (760)
..+.++..+.
T Consensus 99 ~~Lqra~sl~ 108 (284)
T KOG4642|consen 99 KVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHH
Confidence 9999997664
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00091 Score=69.54 Aligned_cols=193 Identities=18% Similarity=0.200 Sum_probs=131.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~ 315 (760)
.+..-..+..++..-++...+|++++|+.+.+|..|+.-. .....+|..+|+++++..... ++.. ....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~-------lg~s-~~~~- 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS-------LGKS-QFLQ- 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh-------hchh-hhhh-
Confidence 4445556778888889999999999999999999888532 234788888998888754321 1111 0000
Q ss_pred hhhhcCchHHhhcHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 004339 316 RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 393 (760)
Q Consensus 316 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la 393 (760)
..|.. +. .+...+. .+.+...+|.|..+.|+.++|++.|..+++..|.. ++..++.+|.
T Consensus 242 ---------~~g~~------~e-~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLi 302 (539)
T PF04184_consen 242 ---------HHGHF------WE-AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLI 302 (539)
T ss_pred ---------cccch------hh-hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHH
Confidence 00110 01 1111111 34566789999999999999999999999988843 4677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH-hcc---------------HHHHHHHHHHHHHhCCCChh
Q 004339 394 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~ 457 (760)
.+++.++.|.++...+.+.-+. .-|..+.+.+.-+.+-.+ .|+ -..|.+.+.+|++.+|.-+.
T Consensus 303 e~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKYDDI-SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999988875332 235556666655544333 121 13478899999999998765
Q ss_pred HH
Q 004339 458 LR 459 (760)
Q Consensus 458 ~~ 459 (760)
..
T Consensus 382 YL 383 (539)
T PF04184_consen 382 YL 383 (539)
T ss_pred hh
Confidence 43
|
The molecular function of this protein is uncertain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.017 Score=62.37 Aligned_cols=115 Identities=24% Similarity=0.322 Sum_probs=60.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHH------HHH----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKV------LEI----YPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
-..|.++-+..++++|+.+|.+. +++ .|... ..--..|.-+...|+++.|+..|-.+--+ .
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~ 736 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------I 736 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------H
Confidence 34455555666677777776542 222 12211 12223455556667777777776554211 0
Q ss_pred HHHHH-HccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 87 DLGEL-LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 87 ~la~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
..... .....+.+|+..+......... ...|-.++..|...|+|+-|..+|.++
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~------s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA------SGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc------cccchHHHHHhccchhHHHHHHHHHhc
Confidence 11111 1123555555555443322211 344566777888888888888888665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=53.74 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 56 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 56 (760)
+++.+|..|...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45556666666666666666666666666666666665553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0021 Score=63.03 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=133.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc-CCCCChHHHH--HHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNY 311 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~--~lg~~~y 311 (760)
..-+.+....|++.+|.....+++.-+|.+..++..--.+++.+|+...-...+.+++.. ++....++|. .++.. +
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L 185 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-L 185 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-H
Confidence 334556678899999999999999999999999999999999999999999999999887 4443333332 22222 4
Q ss_pred HHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHH
Q 004339 312 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 391 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 391 (760)
... |-+++|.+.-.++++++|.+.++...++.++...|++.++.+...+.-..-..+. .-...-|..
T Consensus 186 ~E~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-mlasHNyWH 252 (491)
T KOG2610|consen 186 EEC------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-MLASHNYWH 252 (491)
T ss_pred HHh------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-HHHhhhhHH
Confidence 444 9999999999999999999999999999999999999999998776543221000 011334667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
.|.+++..+.|+.|+.+|..-+-......+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 788999999999999999886654333444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-05 Score=54.08 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
.+++.+|.+|..+|++++|+.+|+++++.+|+++.+|+.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888888888888888888888888888888888888765
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00026 Score=63.64 Aligned_cols=106 Identities=17% Similarity=0.066 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHH
Q 004339 213 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL----------QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 282 (760)
Q Consensus 213 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 282 (760)
|+.|.+.++.....+|.+++.+++-|.++..+.++ ++|+.-|+.++.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-- 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-- 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--
Confidence 56677777777777777777777777766554332 334444444455555555555555554443321
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 283 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 283 ~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
...+.......|++|..+|+++...+|++......|..
T Consensus 85 -----------------------------------l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 85 -----------------------------------LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp -----------------------------------H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred -----------------------------------hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 11111222367899999999999999998775554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.023 Score=60.12 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hhcCC--
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 419 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~-- 419 (760)
.......|..++.+....|.+..|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .+...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3345678999999999999999999999999887642211 2578889999999999999999999998888 22111
Q ss_pred ---------------------C-c-------HHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 420 ---------------------T-D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 420 ---------------------~-~-------~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
. . ..+++.+|...... +..+.++..|..++.+.|+....|+.+|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 1 55666777777777 88888999999999999999999999999
Q ss_pred HHHHHH
Q 004339 465 AMQKFS 470 (760)
Q Consensus 465 ~~~~~~ 470 (760)
.+...-
T Consensus 301 ~~~~~~ 306 (352)
T PF02259_consen 301 FNDKLL 306 (352)
T ss_pred HHHHHH
Confidence 876654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00072 Score=66.15 Aligned_cols=167 Identities=13% Similarity=0.030 Sum_probs=133.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh-CCCC--
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSN-- 346 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~-- 346 (760)
.-+.++...|++.+|...+.+++...|. +..++...-.+ ++.. |+...-...+++++.. +|+-
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a-~fy~------------G~~~~~k~ai~kIip~wn~dlp~ 173 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDA-HFYN------------GNQIGKKNAIEKIIPKWNADLPC 173 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhH-HHhc------------cchhhhhhHHHHhccccCCCCcH
Confidence 3445567789999999999999999998 66666655566 6767 8888889999999887 6554
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc---H
Q 004339 347 -LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---A 422 (760)
Q Consensus 347 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 422 (760)
.++...++..+...|-|++|.+...++++++| .+..+...+++++...|++.++.++..+.-.... ... .
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~-----~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlas 247 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINR-----FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLAS 247 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCC-----cchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHh
Confidence 66777788899999999999999999999998 8889999999999999999999999887655432 111 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCCCh
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNY 456 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~ 456 (760)
.-|...+.++...+.|+.|+.+|..-+ .+..++.
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 345678888999999999999997644 3344444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.046 Score=56.13 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=127.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 252 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 252 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
-.+++++...|-.+.+|+.....+...++-+.|+....+++...|+ ..+.++.+ |-... +.....|-|+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps----L~~~lse~-yel~n-----d~e~v~~~fdk 358 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS----LTMFLSEY-YELVN-----DEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc----hheeHHHH-Hhhcc-----cHHHHhhhHHH
Confidence 3567777778888899999999999999999999999999988775 22223322 22220 00000122222
Q ss_pred HHHHHHHHHhh-----------CC------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHH
Q 004339 332 AKELYTRVIVQ-----------HT------------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388 (760)
Q Consensus 332 A~~~~~~al~~-----------~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 388 (760)
..+.+.+-... +| ....+|..+.....+..-...|..+|.++....- ..+.+
T Consensus 359 ~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-----~~h~v 433 (660)
T COG5107 359 CTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-----VGHHV 433 (660)
T ss_pred HHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----CCcce
Confidence 22222211111 01 1112222233333344456777778877766431 22333
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 389 WINLAH-VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 389 ~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
+..-|. -|...|++.-|..+|+-.+..|+ +++..-...-..+...|+-..|...|++++..-.. ..+-.+|+
T Consensus 434 yi~~A~~E~~~~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~-----~q~k~iy~ 506 (660)
T COG5107 434 YIYCAFIEYYATGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVERLEK-----TQLKRIYD 506 (660)
T ss_pred eeeHHHHHHHhcCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH-----hhhhHHHH
Confidence 333332 35567888888888888888653 33333334444556788888888888887754321 13445566
Q ss_pred HHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 004339 468 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASN 506 (760)
Q Consensus 468 ~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~~ 506 (760)
++. +++.-.+.+..+..+-++....-|
T Consensus 507 kmi------------~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 507 KMI------------EYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHH------------HHHHhhcchHHHHhHHHHHHHHcC
Confidence 555 667777777777777666665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00047 Score=69.84 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
.+|..+.+...+.+..+.|..+|.++++..+....+|...|.+.+. .++...|..+|+.+++.+|.+..+|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677788888888889999999999997666778899999999777 566666999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC--hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 277 KNDDWVKAKETFRAASDATDGKD--SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~--~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
..|+...|..+|++++...+... ...|.....+ -... |+++....++.++....|....
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f-E~~~------------Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEF-ESKY------------GDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH-HHHH------------S-HHHHHHHHHHHHHHTTTS-H
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999998765422 2344444444 3344 9999999999999999887444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0028 Score=59.55 Aligned_cols=204 Identities=14% Similarity=0.108 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ------AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPI 120 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~ 120 (760)
...|..-+.+|...++|++|..++.++++-..++.. ++-..+.+.. ...+.++..+|+++..+.-.++.+.++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 455666778888899999999999999965544322 2333444444 458999999999999999988877776
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
..-...+--....-+++.|+++|++++.+-.. . .....-...+
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~----------------------------------~---dr~~ma~el~ 153 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEE----------------------------------D---DRDQMAFELY 153 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc----------------------------------c---chHHHHHHHH
Confidence 66666666677788999999999999863100 0 0111234566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CCChHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GKYPNALSM 270 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 270 (760)
-..++++.+...+.+|-..+.+-... .|.....++....+|+...+|..|..+++...++. |.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 77889999999999988877765422 24444556666777778889999999998876653 333445555
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 004339 271 LGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~ 289 (760)
|-.. +..|+.++....+.
T Consensus 234 LL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHH-hccCCHHHHHHHHc
Confidence 5444 45667766665553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.034 Score=58.85 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cCC----
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKV-NGK---- 263 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---- 263 (760)
.......+..++.+....|.+..|...+.++....+ ..+.+.+..+.++...|+..+|+..+...+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445667888899999999999999999988887542 24667778888899999999999888887771 110
Q ss_pred -----------------------------ChHHHHHHHHHHhhc------CCHHHHHHHHHHhhhcCCCCChHHHHHHHH
Q 004339 264 -----------------------------YPNALSMLGDLELKN------DDWVKAKETFRAASDATDGKDSYATLSLGN 308 (760)
Q Consensus 264 -----------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~lg~ 308 (760)
...++..+|...... +....++..|..++...|. ...+|+.+|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence 012566667766666 7889999999999999887 6668888888
Q ss_pred HHHHHHHhhhhcCch-----HHhhcHHHHHHHHHHHHhhCCC
Q 004339 309 WNYFAALRNEKRAPK-----LEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 309 ~~y~~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~ 345 (760)
. +...+......+. ........|+..|-+++...+.
T Consensus 301 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 F-NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred H-HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8 6666544432221 2224445577777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.017 Score=63.09 Aligned_cols=139 Identities=11% Similarity=0.075 Sum_probs=102.0
Q ss_pred hcHHHHHHHHHHHHhhCC-CCHHH------HHHHHHHHH----HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHT-SNLYA------ANGAGVVLA----EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p-~~~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
|+-+.++.++..+.+... ..+.+ |+.....+. .......|..++.......| +.+..++..|.+
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP-----~s~lfl~~~gR~ 276 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP-----NSALFLFFEGRL 276 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHH
Confidence 889999999999877321 11221 111111111 23467889999999999998 778889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhh-HHHHHHHHH
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD-AGVAMQKFS 470 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~ 470 (760)
+...|+.+.|+..|+.++..-..- -..-+++.+|+++.-+++|++|..+|...++.+.....++.. .|.|+...+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 999999999999999988531111 125667899999999999999999999999988776555444 455555555
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0083 Score=61.84 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChHHHHHHHHHHhh---cCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+++...+-..|....+|+.-+.+++.+-.+ -++.+.+...+|.++.+ .|+.++|+..+..++......++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344555555666667776666666655544 34455666677777776 77777777777776655555577777
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 383 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 383 (760)
..+|.+ |-......... ....+++|+..|.++...+| +.+.-.+++.++...|.-.....-+.++.
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------- 286 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIG--------- 286 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHH---------
Confidence 777777 65553221110 11458999999999999995 55666677777777775333322222211
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+...+...|. + ....+-..+..++.+..-.|++++|+.++++++.+.|..
T Consensus 287 ------~~l~~llg~kg~-----------~---~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 287 ------VKLSSLLGRKGS-----------L---EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ------HHHHHHHHhhcc-----------c---cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111111222221 1 122334444455566666677777777777777665543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.16 Score=63.01 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-cC-----
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-YY----- 418 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~----- 418 (760)
.-...|...|.+....|.++.|..++-.|.+..+ +.++...|..++..|+-..|+..++..+.++ ++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL-------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCc
Confidence 3567899999999999999999999999988765 8899999999999999999999999999764 22
Q ss_pred ---CCc------HHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 419 ---NTD------AQILLYLARTHYEAEQWQ--DCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 419 ---~~~------~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
|.. ..+.+.++......|++. .-+.+|..+..+.|....-+|.+|.-|.++-.
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~ 1804 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLE 1804 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhh
Confidence 111 223444445555556543 35688999999999988899999976655543
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.15 Score=56.64 Aligned_cols=425 Identities=12% Similarity=-0.024 Sum_probs=224.9
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ---LGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
+..++.....+..|..++...|++++-...-..+..+.|.++..|.....-... .+....+...|++++.- -+++.
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~ 184 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVP 184 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccch
Confidence 345666667778888888999998888887778888888888887776554433 36777888888888853 33555
Q ss_pred HHHHHHHHHc--------cCCHhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchh
Q 004339 84 AFIDLGELLI--------SSDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 153 (760)
Q Consensus 84 ~~~~la~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 153 (760)
.|...+..+. .+++..-...|.+++.......... ...++..+-..|...-..++-+.+|...+..+...
T Consensus 185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~ 264 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDE 264 (881)
T ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 5555444332 2467777778888776543321111 13344444555555555567777777776643111
Q ss_pred hhhcccchhhhhh--hhhHHHHH----HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 154 TLLDSKTKTYVID--ASASMLQF----KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 227 (760)
Q Consensus 154 ~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 227 (760)
....... +... ........ ....+...+..+...+...|.....|..+.......|.+..-...+++++...
T Consensus 265 ~~~~~~~--~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 265 DTRGWDL--SEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred hhhHHHH--HHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 1000000 0000 00000000 00000011111112222334444455555666666677766667777777666
Q ss_pred CCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCC-HHHHHHHHHHhhhcCCCCChHHHHH
Q 004339 228 QDYVDAYLRLAAIA-KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD-WVKAKETFRAASDATDGKDSYATLS 305 (760)
Q Consensus 228 p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~ 305 (760)
+.....|+..+... ..++-...+...+.+++...|-...+|...-..+.+.+. ...-...+.+.+... ..+..
T Consensus 343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~-----~~l~~ 417 (881)
T KOG0128|consen 343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT-----VELHN 417 (881)
T ss_pred cccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH-----HHHHH
Confidence 66666676666544 223333444455555555555544444332222222222 112222222222210 00111
Q ss_pred HHHHHHHHHHhhhhcC----chHHhhcHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhcC
Q 004339 306 LGNWNYFAALRNEKRA----PKLEATHLEKAKELYTRVIVQ-HTSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 306 lg~~~y~~~~~~~~~~----~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 379 (760)
...+ |+.. ..+.. .......|..|...|...... --.....+...|.++. .+++.+.|+.+....+....+
T Consensus 418 ~~~~-~rr~--~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~ 494 (881)
T KOG0128|consen 418 DYLA-YRRR--CTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG 494 (881)
T ss_pred HHHH-HHHh--hcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc
Confidence 1111 1111 11000 111235666777776665554 1223345556666665 567888898888877765431
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHH
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLL 446 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 446 (760)
.....|+....+-...|+...|..++++|+.....+.+ -.++..+-+.-...|.++.......
T Consensus 495 ----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 495 ----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred ----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 33447888888888889999999999999886444443 4445455555555666665554443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0042 Score=61.13 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 462 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 462 (760)
.+..+-.-|.-|++.++|..|+..|.+.|..-...++ +.+|.+.|-|.+..|+|..|+.-..+|+.++|.+..+++.=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3455666788899999999999999999986323333 67788999999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q 004339 463 GVAMQKFS 470 (760)
Q Consensus 463 a~~~~~~~ 470 (760)
|.|+..+.
T Consensus 160 Akc~~eLe 167 (390)
T KOG0551|consen 160 AKCLLELE 167 (390)
T ss_pred hHHHHHHH
Confidence 88865543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0024 Score=66.46 Aligned_cols=137 Identities=16% Similarity=0.129 Sum_probs=107.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC----------------CC----Cch
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV----------------FV----QMP 386 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~----~~~ 386 (760)
.+...-++.-.+|++++|+++.+|..||.- ......+|..+|+++++...... +. ..+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 677888888999999999999999887752 23446778888888776542100 00 014
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChhHHhhHHHH
Q 004339 387 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL-APSNYTLRFDAGVA 465 (760)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 465 (760)
.+...+|.|..++|+..+|++.|+..++.++..++..++.+|..+++.++.|.++...+.+.=.+ -|....+.|.-|++
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 45678999999999999999999999998665556889999999999999999999999997544 46777777877776
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.1 Score=52.87 Aligned_cols=145 Identities=17% Similarity=0.032 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 120 IEVLNNIGVIHFEKG-EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 120 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...+++.|......+ +++.|..++++++.+..... ...........-...
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-----------------------------~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-----------------------------KMDKLSPDGSELRLS 85 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-----------------------------hccccCCcHHHHHHH
Confidence 567888999999999 99999999999987421000 000000001112346
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CChHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTV---AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG-KYPNALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 274 (760)
++..++.+|...+.++ +|..++..+-...|+.+..+...-.++...++.+.+...+.+++...+ .....-..+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 7888999999888765 455666666677788888876666666668999999999999987654 222222222222
Q ss_pred -HhhcCCHHHHHHHHHHhhh
Q 004339 275 -ELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 275 -~~~~g~~~~A~~~~~~al~ 293 (760)
.+.......|...+..++.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHH
Confidence 1122334566666665554
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.9e-05 Score=47.76 Aligned_cols=33 Identities=30% Similarity=0.644 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004339 36 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 68 (760)
Q Consensus 36 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 68 (760)
+|+++|+++|+++.+|+.+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367788888888888888888888888888775
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.1e-05 Score=47.96 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 336 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=58.44 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=87.2
Q ss_pred HHHHHHhhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 335 LYTRVIVQHTSNLY---AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 411 (760)
Q Consensus 335 ~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 411 (760)
...+....+|.+.+ +...+|..+...|++++|...++.++....... -.+.+-..||.+.+.+|.++.|+..+..
T Consensus 74 ~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~--lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 74 AAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDEN--LKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHH--HHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 33444445555555 345678888999999999999999886543111 1255678899999999999999999886
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 412 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 412 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
.... .-.+.+....|.++...|+..+|+..|.+++...++.
T Consensus 152 ~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 152 IKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 6541 1225567789999999999999999999999997554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.2 Score=56.35 Aligned_cols=240 Identities=15% Similarity=0.094 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 265 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 265 (760)
.+......+.......++.+|..++.++...-|. ........|.+....|+++.|..+.+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4456666777888889999999888887755432 123344567778899999999999999998877653
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH-----HHHHHHHHHHHHhhhhcCchHHhhcH--HHHHH
Q 004339 266 ----NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT-----LSLGNWNYFAALRNEKRAPKLEATHL--EKAKE 334 (760)
Q Consensus 266 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~lg~~~y~~~~~~~~~~~~~~~~~~--~~A~~ 334 (760)
.++..+|.+..-.|++.+|..+...+.+.....+.+.+ +..+.+ +... |.. .....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 37778899999999999999999888876433233222 222223 3333 522 22222
Q ss_pred HHH----HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCc-hHHHHHHHHHHHHcCCHHHHHHH
Q 004339 335 LYT----RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQM-PDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 335 ~~~----~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
.|. .-+...|.........+.++...-+++.+..-....+....... .+.. .-+++.|+.+++..|+++.|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222 22334455555544445444433336666666655555432110 1111 22335899999999999999999
Q ss_pred HHHHHhhhcCCC-c----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 409 YQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 409 ~~~al~~~~~~~-~----~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
+..+......+. . ..++......+...|+...|...+.+.
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999888764442 1 222222333445579999988888773
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00019 Score=46.18 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+.+++.+|.+|+.+|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578888888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=46.56 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.16 Score=53.19 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=73.5
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHHH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 84 (760)
++...+.++..|+.......+.+.+.+--.+|.+++..+|++++.|..-|...+.-+. ++.|..+|.++++.+|+++..
T Consensus 97 at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 97 ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 4456677888888888888888889999999999999999999999999998887765 999999999999999999988
Q ss_pred HHHHHH
Q 004339 85 FIDLGE 90 (760)
Q Consensus 85 ~~~la~ 90 (760)
|...-.
T Consensus 177 w~eyfr 182 (568)
T KOG2396|consen 177 WKEYFR 182 (568)
T ss_pred HHHHHH
Confidence 765433
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.24 Score=55.09 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=87.4
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH--Hc--cCCHhHHH
Q 004339 26 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL--LI--SSDTGAAL 101 (760)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~--~~~~~~A~ 101 (760)
..+.-+.=+..++.-+.+++.+...+..|..++...|++.+-...-..+..+.|..+..|.....- ++ .+....+.
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 344455566777777788888899999999999999999998888888888999999998887653 33 24778888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHhc
Q 004339 102 DAFKTARTLLKKAGEEVPIEVLNNIGVIH-------FEKGEFESAHQSFKDALG 148 (760)
Q Consensus 102 ~~~~~al~~~~~~~~~~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~ 148 (760)
..|++++.-... +.+|...+... ...+.++....+|.+++.
T Consensus 171 ~~~ekal~dy~~------v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 171 ELFEKALGDYNS------VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccc------chHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 889988864332 34454444443 445678888888988886
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.1 Score=52.85 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHc----C------C----cHHHHHHHHHHHHHcCCHH---HHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIH-DTVAASVLYRLILFKY----Q------D----YVDAYLRLAAIAKARNNLQ---LSIELVNEA 257 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~----p------~----~~~~~~~la~~~~~~g~~~---~A~~~~~~a 257 (760)
-...+|+.|......+ +++.|..++++++..- + + ...++..++.+|...+.++ +|..+++.+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3468899999999999 9999999999998762 1 1 1345677888888877654 456666666
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q 004339 258 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 296 (760)
Q Consensus 258 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (760)
....|+.+.++...-.++...++.+.+...+.+++...+
T Consensus 114 ~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 677898888887777777778899999999999988654
|
It is also involved in sporulation []. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.035 Score=53.00 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH-H
Q 004339 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE-S 138 (760)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~ 138 (760)
..-..|+.+...++.++|.+..+|...-.++. .+ +..+-+.++..++.-+|++ ..+|...-.+....|++. .
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-----YQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-----YQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-----hhHHHHHHHHHHHhcCcccc
Confidence 34566777777888888988888888777776 44 7888888888888888887 788888888888888777 6
Q ss_pred HHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 004339 139 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 218 (760)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 218 (760)
-+.+...++. .+..+..+|...--+....+.++.-+.
T Consensus 132 ELef~~~~l~-------------------------------------------~DaKNYHaWshRqW~~r~F~~~~~EL~ 168 (318)
T KOG0530|consen 132 ELEFTKLMLD-------------------------------------------DDAKNYHAWSHRQWVLRFFKDYEDELA 168 (318)
T ss_pred hHHHHHHHHh-------------------------------------------ccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 6777777765 445566777777777778888999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh-cC--CHHHHHHHHH
Q 004339 219 LYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNALSMLGDLELK-ND--DWVKAKETFR 289 (760)
Q Consensus 219 ~~~~~l~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~ 289 (760)
+...++..+-.+-.+|...-.+... .| ..+.-+.+....+.+.|++..+|..|..++.. .| .+.....+..
T Consensus 169 y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~ 248 (318)
T KOG0530|consen 169 YADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVE 248 (318)
T ss_pred HHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHH
Confidence 9999988776666666543322211 22 23344667788888899999999988888775 44 2444445555
Q ss_pred HhhhcCCCCChHHHHHHHHHHH
Q 004339 290 AASDATDGKDSYATLSLGNWNY 311 (760)
Q Consensus 290 ~al~~~~~~~~~~~~~lg~~~y 311 (760)
..+...+...++.+-.+..+ |
T Consensus 249 ~l~~~~~~~sP~lla~l~d~-~ 269 (318)
T KOG0530|consen 249 NLYLQLPKRSPFLLAFLLDL-Y 269 (318)
T ss_pred HHhhccCCCChhHHHHHHHH-H
Confidence 44433344466766666666 5
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0035 Score=58.85 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQD----------YVDAYLRLAAIAKARNNLQLSIELVNEA 257 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 257 (760)
...++..-|+-++..|+|.+|...|..++.. .|. ....+.+++.|++..|+|-++++....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3467888999999999999999999988732 243 3456889999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 258 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 258 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+..+|.+..+++..|.++...-+..+|..-|..++.+.|.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999999999999999999886
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0009 Score=62.65 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=85.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDN----------CETLKALGHIYVQLGQIEKAQELLRKAA 75 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 75 (760)
+.++...|+-++..|+|.+|...|..++.. .|.. ...+.+++.|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988742 3443 4567888999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 76 KIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 76 ~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
..+|.+..+++..|.+.. .-+..+|..-|..++.+.|..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999998887 448889999999999988875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.23 Score=51.49 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=75.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH--HHHHHHHHHhc-------CCCCCCchHHHHHH--HHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK--DLFTQVQEAAS-------GSVFVQMPDVWINL--AHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p-------~~~~~~~~~~~~~l--a~~ 395 (760)
+.-++|+.+++.++...|.+....+..-. +-...|..|+ ..+.+.+.+.. .+....+..+-..| |..
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 34789999999999999988764433221 1122233333 22223222210 11111233444444 556
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 447 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 447 (760)
++.+|+|.++.-+-.-.... . +.+.++..+|.|++...+|.+|..++..
T Consensus 472 Lysqgey~kc~~ys~WL~~i--a-PS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKI--A-PSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhcccHHHHHHHHHHHHHh--C-CcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 78999999999887777774 3 4899999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.018 Score=59.36 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHHcCCChHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKA---RNNLQLSIELVNEA-LKVNGKYPNA 267 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 267 (760)
.+.+..++-.+|....+|+.-+.+.+.+-.. .+..+.+...+|.++.+ .|+.++|+.++..+ ....+.++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999998887765 45667778888999988 89999999999994 4556788999
Q ss_pred HHHHHHHHhhc---------CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHH----
Q 004339 268 LSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE---- 334 (760)
Q Consensus 268 ~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~---- 334 (760)
+..+|.+|-.. ...++|+..|.++....+ +.+.-.+++.+ +... |.......
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--~~Y~GIN~AtL-L~~~------------g~~~~~~~el~~ 284 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--DYYSGINAATL-LMLA------------GHDFETSEELRK 284 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc--cccchHHHHHH-HHHc------------CCcccchHHHHH
Confidence 99999997532 347899999999999875 45555555555 4333 22111111
Q ss_pred ---HHHHHH-h----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 335 ---LYTRVI-V----QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 335 ---~~~~al-~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
.+...+ + -.-.+.+.+..++.+..-.|+++.|+..+.+++...|
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 111111 1 1123455666677777778888888888888887765
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00039 Score=44.74 Aligned_cols=31 Identities=42% Similarity=0.805 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 46 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 46 (760)
+++.+|.+++..|+|++|+.+|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.25 Score=55.65 Aligned_cols=212 Identities=17% Similarity=0.101 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c-------HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE 116 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~ 116 (760)
+|......+.......++.+|..+..++...-|. . .......|.+.. .++++.|+...+.++...|....
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556677777788999998888887654332 1 122223344444 67999999999999999888765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch
Q 004339 117 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 196 (760)
Q Consensus 117 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~ 196 (760)
.....++..+|.+..-.|++.+|+.+...+.+... ..+..+-.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~-------------------------------------~~~~~~l~ 536 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR-------------------------------------QHDVYHLA 536 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH-------------------------------------HcccHHHH
Confidence 55677888889999999999999999888876311 00122234
Q ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHH----HHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChH
Q 004339 197 VTVLFNLARLLEQIHDTV--AASVLYRLIL----FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN 266 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~--~A~~~~~~~l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~ 266 (760)
..+.+..+.++..+|+.. .....|...- ...|-+.......+.++...-+++.+..-....+.. .|....
T Consensus 537 ~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~ 616 (894)
T COG2909 537 LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLL 616 (894)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhH
Confidence 456666788888888433 3333333332 223333333333333333322355544444444332 222221
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 267 ---ALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 267 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
+++.++.+++..|++++|...+.......
T Consensus 617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 617 SRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 23477888888888888888877766644
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.031 Score=54.70 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 004339 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 310 (760)
Q Consensus 231 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~ 310 (760)
...-+.-+.-....|++.+|...|..++...|.+..+...++.+|...|+.+.|...+...-.......... ..+.+.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~--l~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG--LQAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH--HHHHHH
Confidence 344555666677889999999999999999999999999999999999999999988876544332211111 111110
Q ss_pred -HHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHH
Q 004339 311 -YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 389 (760)
Q Consensus 311 -y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 389 (760)
+... ....+ ...+...+..+|++..+.+.+|..+...|+++.|++.+-..+..+-+. .+..+.
T Consensus 212 ll~qa------------a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~R 275 (304)
T COG3118 212 LLEQA------------AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEAR 275 (304)
T ss_pred HHHHH------------hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHH
Confidence 1111 11111 133555677899999999999999999999999999888888876532 345555
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 004339 390 INLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~ 410 (760)
-.+-.++...|.-+.+...|+
T Consensus 276 k~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 555555555554333333333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00042 Score=44.57 Aligned_cols=31 Identities=42% Similarity=0.912 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 46 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 46 (760)
+|+.+|.+|+..|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3444455555555555555555555544443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00073 Score=69.95 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=85.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 004339 353 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432 (760)
Q Consensus 353 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 432 (760)
-+...+.-+.|+.|+..|.++++++| +++..+.+.+..+++.++|..|+..+.++++. .|....+|+..|.++
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldp-----nca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDP-----NCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAV 82 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCC-----cceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHH
Confidence 34455566778888888888888887 67777888888888888888888888888885 577788888888888
Q ss_pred HHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 433 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 433 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
..++++.+|+..|++...+.|+++.+...+..|
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 888888888888888888888888887777666
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00042 Score=71.65 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=96.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
+-..|..++..+.|+.|+..|.++|.++|+++..+-..+.++++.+++..|+.-+.++++++|....+|+..|.+.. .+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999998888 66
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 129 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 129 (760)
.+.+|+..|+....+.|+. +.+...+..+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd-----~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPND-----PDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCc-----HHHHHHHHHH
Confidence 9999999999999999986 5655555444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.018 Score=59.52 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=119.5
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGD------------FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 72 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 72 (760)
+.+..+|.++.+|+.++...-..-. .+.-+.+|++||+.+|.+...+..+-.++......+....-++
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5678899999999998877654432 4677889999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHc---cC-CHhHHHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHHcCC
Q 004339 73 KAAKIDPRDAQAFIDLGELLI---SS-DTGAALDAFKTARTLLKKAGEE-------------VPIEVLNNIGVIHFEKGE 135 (760)
Q Consensus 73 ~al~~~p~~~~~~~~la~~~~---~~-~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~~la~~~~~~g~ 135 (760)
+++..+|+++..|..+-.... .+ .+......|.+++......... ....++..+..+....|.
T Consensus 90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~ 169 (321)
T PF08424_consen 90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGY 169 (321)
T ss_pred HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999988766544 12 6889999999998876554221 124556777888889999
Q ss_pred HHHHHHHHHHHhccc
Q 004339 136 FESAHQSFKDALGDG 150 (760)
Q Consensus 136 ~~~A~~~~~~al~~~ 150 (760)
.+.|+..++-.+..+
T Consensus 170 ~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 170 TERAVALWQALLEFN 184 (321)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999999864
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.017 Score=56.41 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH--HHHc
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG--ELLI 93 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~ 93 (760)
.-+..+.-.+..|++..|...|..++...|.+..+...++.||...|+.+.|..++...-...... ......+ .++.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~ 214 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLE 214 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHH
Confidence 346667778899999999999999999999999999999999999999999888876543222211 1111111 1111
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
...... ...+.+.+..+|.+ ..+-+.+|..|...|+++.|+..+-.++..
T Consensus 215 qaa~~~~-~~~l~~~~aadPdd-----~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 215 QAAATPE-IQDLQRRLAADPDD-----VEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHhcCCC-HHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111111 12344455556665 788899999999999999999988887764
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.004 Score=61.26 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.-+..-|.-|+...+|..|+.+|...|...- ....-+...
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc---------------------------------------~D~dlnavL 121 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKC---------------------------------------ADPDLNAVL 121 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC---------------------------------------CCccHHHHH
Confidence 55667779999999999999999999987310 022235678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
|.+.|-+....|+|..|+.-+..++..+|.+..++++-|.+++.+.++..|+.+++..+.++.
T Consensus 122 Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 889999999999999999999999999999999999999999999999999999998876543
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.21 Score=47.94 Aligned_cols=206 Identities=12% Similarity=0.021 Sum_probs=146.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHH-HH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV-KA 284 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 284 (760)
+.....-..|+.+...++.++|.+..+|...-.++..+ .+..+-+.++..++..+|.+..+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 34445667899999999999999888887776666554 45777889999999999999999999998888889887 77
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC--
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KG-- 361 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-- 361 (760)
+.+...++....+ +-.+|...-.+ .... +.++.-+.+....+..+-.|-.+|+..-.+... .|
T Consensus 133 Lef~~~~l~~DaK-NYHaWshRqW~-~r~F------------~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 133 LEFTKLMLDDDAK-NYHAWSHRQWV-LRFF------------KDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHH-HHHH------------hhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCc
Confidence 8888888886555 55556555544 4444 778999999999998877776676654333332 22
Q ss_pred ---ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH-cC--CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 004339 362 ---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA-QG--NFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432 (760)
Q Consensus 362 ---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 432 (760)
..+.-+.+....+.+.| .+..+|..|.-++.. .| .+..-..+....+.. .....|..+..|..+|
T Consensus 199 ~~~~le~El~yt~~~I~~vP-----~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~-~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 199 SKAELERELNYTKDKILLVP-----NNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQ-LPKRSPFLLAFLLDLY 269 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhc-cCCCChhHHHHHHHHH
Confidence 23344567778888888 778889888888875 44 244444444444421 2333466666666666
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.69 Score=48.72 Aligned_cols=89 Identities=4% Similarity=0.065 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC-CHhHHHHHHHHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS-DTGAALDAFKTART 109 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~-~~~~A~~~~~~al~ 109 (760)
.-...|+.++...+.++..|........+.+.+.+--.+|.+++..+|++++.|+.-|.-.. -+ +.+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 44677889999999999999999999888888999999999999999999999999888655 44 79999999999999
Q ss_pred HHHhcCCCCCHHHHHH
Q 004339 110 LLKKAGEEVPIEVLNN 125 (760)
Q Consensus 110 ~~~~~~~~~~~~~~~~ 125 (760)
.+|++ +.+|..
T Consensus 169 ~npds-----p~Lw~e 179 (568)
T KOG2396|consen 169 FNPDS-----PKLWKE 179 (568)
T ss_pred cCCCC-----hHHHHH
Confidence 99997 566543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.056 Score=48.80 Aligned_cols=114 Identities=18% Similarity=-0.003 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHH
Q 004339 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 203 (760)
Q Consensus 124 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~l 203 (760)
...|......|+...++..+.+++.+.....+..... ...+...... .......++..+
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-~~W~~~~r~~--------------------l~~~~~~~~~~l 68 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-EEWVEPERER--------------------LRELYLDALERL 68 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-STTHHHHHHH--------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-cHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 3345556677888999999999987532110000000 0000000000 001123445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
+..+...|+++.|+.++.+++..+|.+-.++..+..+|...|++..|+..|.++.
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.29 Score=50.17 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc
Q 004339 328 HLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKG-------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 399 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~ 399 (760)
++.+|..+|.++....... ..+.+.+|.+|..-. +...|+..|.++.... ++.+.+.+|.+|..-
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G 200 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLLGRMYEKG 200 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcC
Confidence 4555555555555543222 223445555554321 2246777777777654 477888888777552
Q ss_pred ----CCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc---------------cHHHHHHHHHHHHHhCCC
Q 004339 400 ----GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE---------------QWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 400 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 454 (760)
.++.+|+.+|.++... .+....+.++ +++..| +...|..++..+....+.
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~----g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQ----GDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHC----CCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 3788888888888875 2277777777 666665 555566666665555443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0018 Score=41.58 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888888888888888888877774
|
... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.3 Score=50.08 Aligned_cols=166 Identities=21% Similarity=0.213 Sum_probs=106.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccC----
Q 004339 24 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS---- 95 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 95 (760)
....+++..|+..+..+-.. ..+.+...++.+|... .+...|+.+|..+. ...++.+.+.||.+|..|
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence 34566777777777777552 2346777777777664 45777888888444 445677788888887743
Q ss_pred -CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 96 -DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG-------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 96 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
++.+|..+|.++........ ..+.+.+|.+|..-. ....|+..|.++...
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~------------------ 184 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL------------------ 184 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh------------------
Confidence 67888888888877632210 233677777776642 222566666665431
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.++.+.+.+|.+|.. ..++.+|..+|.++..... ..+.+.++ ++..
T Consensus 185 ---------------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~ 234 (292)
T COG0790 185 ---------------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL 234 (292)
T ss_pred ---------------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh
Confidence 255677777766654 3477788888888877655 66677777 5555
Q ss_pred cC
Q 004339 244 RN 245 (760)
Q Consensus 244 ~g 245 (760)
.|
T Consensus 235 ~g 236 (292)
T COG0790 235 NG 236 (292)
T ss_pred cC
Confidence 54
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.085 Score=54.62 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=97.9
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH---cCCHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA---QGNFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~---~g~~~ 403 (760)
.-.+.-+.+|++|++.+|++...+..+-.+.......+....-+++++..+| .++.+|..+-..... .-.+.
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-----~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-----GSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHhccCcHH
Confidence 4456778899999999999999999998888888899999999999999998 678887766554443 33678
Q ss_pred HHHHHHHHHHhhhcCC---C--------c-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 404 LAMKMYQNCLRKFYYN---T--------D-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~---~--------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
.....|.+++...... . . ..++..+...+.+.|..+.|+..++-.++++-
T Consensus 120 ~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 120 DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 8888888888764211 0 1 55667788888899999999999999999863
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.037 Score=49.99 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQD----------------------YVDAYLRLAAIAKARNNLQLSIELVNE 256 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 256 (760)
.+...|......++...++..+.+++.+... ...+...++..+...|+++.|+.++..
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3444566667778889999999998866421 134456677888899999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 257 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 257 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
++..+|.+..++..+..+|...|++..|+..|.+...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987755
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.9 Score=47.28 Aligned_cols=443 Identities=12% Similarity=0.087 Sum_probs=219.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
.+...|.++..++++.+|..+|.++.....+.+ +++.++..-.+-+++.+.-...+-..-+..|..+...+..|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 456678999999999999999999987655543 333333333344466666666666666677877776666666
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCC---------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-----chhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEV---------P-IEVLNNIGVIHFEKGEFESAHQSFKDALGDG-----IWLT 154 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~---------~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~ 154 (760)
+.. .+.|..|+..+............+. + ...-...|.++...|.|.++...+++.+..- .|..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 544 7899999998877655432221110 1 1122445788999999999999999987531 1111
Q ss_pred hhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcC----CHHHHHHHHHHHH---HH
Q 004339 155 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIH----DTVAASVLYRLIL---FK 226 (760)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g----~~~~A~~~~~~~l---~~ 226 (760)
.. ....+-.-...++-.+... ......|+. -.+.+.+-.++..-. .+--+..++..+. -.
T Consensus 168 d~-----------yd~~vlmlsrSYfLEl~e~-~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 168 DM-----------YDRAVLMLSRSYFLELKES-MSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HH-----------HHHHHHHHhHHHHHHHHHh-cccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 11 1110000001111111110 011122221 122222222222111 1111111111111 11
Q ss_pred ---------------------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cC---CChHHHHHHHHHHhhcCC
Q 004339 227 ---------------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG---KYPNALSMLGDLELKNDD 280 (760)
Q Consensus 227 ---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p---~~~~~~~~la~~~~~~g~ 280 (760)
+|++.-+.-.+-.-.. .+.+++..+++.+... .+ .-...+..+-....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~--~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFM--SDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHh--cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222211211111 1333333333322221 11 111122233333456677
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q 004339 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN---LYAANGAGVVL 357 (760)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 357 (760)
...|..++.-.....|.....--+.+..-.+...+..+ ...-.+...=+.++..+-..+-+. +..+..-|.-+
T Consensus 314 T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~D----D~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 314 TEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCED----DESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHL 389 (549)
T ss_pred HHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 88888887776666665221111100000000000000 000012222333444433333332 22344456667
Q ss_pred HHcCC-hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhhhcCC----CcHHH
Q 004339 358 AEKGQ-FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM--------YQNCLRKFYYN----TDAQI 424 (760)
Q Consensus 358 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~~~~----~~~~~ 424 (760)
.+.|. -++|+.+++.++...| .+... .+....+ -...|.+|+.. +...+....-+ .+.++
T Consensus 390 W~~g~~dekalnLLk~il~ft~-----yD~ec-~n~v~~f-vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTN-----YDIEC-ENIVFLF-VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhcc-----ccHHH-HHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 77776 7889999999999887 33322 1111111 11224444321 12222221111 22455
Q ss_pred HHHHHH--HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Q 004339 425 LLYLAR--THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLS 502 (760)
Q Consensus 425 ~~~la~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~ 502 (760)
-..|+. .++..|+|.+|.-+-.=..+++| .+.++.-+|+|+-... .|.+|..+|..|.
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-------------------~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-------------------RYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-------------------hHHHHHHHHHhCC
Confidence 555544 56779999999999888899999 8888988999865543 6788888887764
Q ss_pred h
Q 004339 503 A 503 (760)
Q Consensus 503 ~ 503 (760)
.
T Consensus 523 ~ 523 (549)
T PF07079_consen 523 P 523 (549)
T ss_pred C
Confidence 3
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.33 Score=47.11 Aligned_cols=207 Identities=13% Similarity=0.140 Sum_probs=125.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH---Hhc--CCCcHHH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLGQIEKAQELLRKA---AKI--DPRDAQA 84 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~--~p~~~~~ 84 (760)
+.+|......+++++|+..|.+++.... ....+...++.+|...|++..-....... ..- .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 6788889999999999999999986521 12457888999999999876544433332 221 1223333
Q ss_pred HHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 85 FIDLGELLI--SSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 85 ~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
...+...+. ...++.-+..+...++........ .....-..++.+|+..|.|..|+.....++..-
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~El----------- 155 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHEL----------- 155 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-----------
Confidence 333333332 235666666666665543332100 012344567888899999999998887776410
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCcHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLR 236 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~ 236 (760)
+.....|....++..-..+|....+..++...+..+-.. .|....+.+.
T Consensus 156 --------------------------Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 156 --------------------------KKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred --------------------------HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 011134455667777777888777777777666655432 2333333222
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 237 --LAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 237 --la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
-|.+.+.-.+|.-|..+|-.+++-+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 2344456667777888887777654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.065 Score=49.12 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.+...++..+...|+++.|+..++.++....+ -..+-.+|+.+....|.++.|+..+...... .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 35567889999999999999999999864322 2345678999999999999999988765321 1123356688999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCC
Q 004339 275 ELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+...|+-.+|+..|.+++...+.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 99999999999999999998644
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.005 Score=39.07 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777777753
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0034 Score=40.26 Aligned_cols=30 Identities=50% Similarity=0.943 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP 45 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 45 (760)
+|+.+|.+|...|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555555555555555555555555544
|
... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.1 Score=54.60 Aligned_cols=143 Identities=11% Similarity=0.040 Sum_probs=94.4
Q ss_pred HHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------c------------------CCCh---HHHHHHHHH
Q 004339 224 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--------N------------------GKYP---NALSMLGDL 274 (760)
Q Consensus 224 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~------------------p~~~---~~~~~la~~ 274 (760)
+..+|.++++++.++.++..+|++..|..++++++-. + +.|- .+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3456666666666666666666666666666655421 0 1111 145556677
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-----CHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-----NLYA 349 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~ 349 (760)
+.+.|.+..|+++++-++.+.|..++.....+......+. +.++--+.+++........ -+..
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs------------~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS------------RQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc------------CCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 7888999999999999999998866665554444413334 6776667766665442111 2346
Q ss_pred HHHHHHHHHHcCCh---------------HHHHHHHHHHHHHhc
Q 004339 350 ANGAGVVLAEKGQF---------------DVSKDLFTQVQEAAS 378 (760)
Q Consensus 350 ~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p 378 (760)
.+.++.++...++- +.|...+.+|+...|
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 67778888888887 899999999999876
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0017 Score=64.13 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=81.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCH
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDT 97 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~ 97 (760)
..+.-.+..|.++.|+..|..++.++|.....+...+.+++.+++...|+.-|..++.++|+....|-..+.... +|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 445666788899999999999999999999999999999999999999999999999999988888888888777 7889
Q ss_pred hHHHHHHHHHHHHHHh
Q 004339 98 GAALDAFKTARTLLKK 113 (760)
Q Consensus 98 ~~A~~~~~~al~~~~~ 113 (760)
.+|...+..+.++.-.
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999888888877543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.042 Score=57.53 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=113.6
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------------CC------------CC---HHHHHHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------------YP------------DN---CETLKAL 54 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~l 54 (760)
+.-+...|-++.+++.++.++..+|++..|..+++++|-. ++ .| ..+++..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4456789999999999999999999999999999988631 11 12 2466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004339 55 GHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELLI--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 131 (760)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 131 (760)
...+.+.|-+..|+++++-++.++|. ++-....+...|. .++|+--+..+...........-...+...+.++.+++
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 78888999999999999999999999 8776666666555 45787777777765542111100012467788888899
Q ss_pred HcCCH---------------HHHHHHHHHHhcccchh
Q 004339 132 EKGEF---------------ESAHQSFKDALGDGIWL 153 (760)
Q Consensus 132 ~~g~~---------------~~A~~~~~~al~~~p~~ 153 (760)
..++- +.|...+.+|+...|+.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 89888 89999999999877643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.7 Score=47.57 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...++.++|..+..+..++.|.++|...-.... ..-.+-.+..|..+.... ..-|.+..
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~------------------~~ecly~le~f~~LE~la---~~Lpe~s~ 853 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN------------------QIECLYRLELFGELEVLA---RTLPEDSE 853 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh------------------HHHHHHHHHhhhhHHHHH---HhcCcccc
Confidence 357888999999999999999999876533110 000001111122121111 13355556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
.+-.+|.++...|.-++|...|-+.- .|.- -...+..++++.+|.++.++.. -|.-..+....+.-++..
T Consensus 854 llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~ 923 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLAD 923 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhh
Confidence 66677777777777777777665432 1211 1122334455555555443321 122122222233334455
Q ss_pred CCHHHHHHHHHHh
Q 004339 279 DDWVKAKETFRAA 291 (760)
Q Consensus 279 g~~~~A~~~~~~a 291 (760)
++..+|++..+++
T Consensus 924 ~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 924 ANHMEAIEKDRKA 936 (1189)
T ss_pred cchHHHHHHhhhc
Confidence 5666666655554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0055 Score=38.85 Aligned_cols=31 Identities=35% Similarity=0.790 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 46 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 46 (760)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0029 Score=62.54 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=82.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 433 (760)
+.-....|.++.|++.|..++.++| ....++...+.+++.++....|+..|..++.+ ++....-|-..|.+..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp-----~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNP-----PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCC-----chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHH
Confidence 3334567889999999999999999 77899999999999999999999999999996 6666788888999999
Q ss_pred HhccHHHHHHHHHHHHHhCC
Q 004339 434 EAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 434 ~~g~~~~A~~~~~~al~~~p 453 (760)
.+|++.+|...|..+++++-
T Consensus 194 llg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HhhchHHHHHHHHHHHhccc
Confidence 99999999999999998873
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.068 Score=56.70 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=113.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 334 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 334 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
.+.-.+++.+|.+...+..-+..+...|+..+|+.++..++-..|.. ....+++.+|.++.+.|...+|--++..|+
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h---~kdi~lLSlaTiL~RaG~sadA~iILhAA~ 276 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH---NKDIALLSLATVLHRAGFSADAAVILHAAL 276 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc---cccchhhhHHHHHHHcccccchhheeehhc
Confidence 34455677788777666655555568899999999999999987731 234578899999999999999999998888
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH--HhHHhhhhcCHHHHHHHHHHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS--ASTLQKTRRTADEVRSTVAEL 491 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~l~~~~~~l~~~~~a~~~l 491 (760)
.. .+.-..-++.+|.++..+|.+......|..+.+..|......-..+.+...+. ...+.+.++.+..+...+.+|
T Consensus 277 ~d--A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~nE~keF 354 (886)
T KOG4507|consen 277 DD--ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTLNELKEF 354 (886)
T ss_pred cC--CccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 23334448999999999999999999999999999976544333333222111 133555666666655555555
Q ss_pred HHHHHHH
Q 004339 492 ENAVRVF 498 (760)
Q Consensus 492 ~~A~~~~ 498 (760)
.+-...+
T Consensus 355 qk~~~h~ 361 (886)
T KOG4507|consen 355 QKQHDHY 361 (886)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0065 Score=39.52 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
|.+||.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555554444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.032 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+.++.+|..++++|+|..|..+...++++.|+|..+..-...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999998766544443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.18 E-value=5.8 Score=50.15 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
....+|+..|.+....|+++.|...+-.|... .-+.++...|..++..|+...|+..++..+..+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKES----RLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999888874 358899999999999999999999999999664
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.7 Score=43.62 Aligned_cols=279 Identities=13% Similarity=0.106 Sum_probs=155.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHH--CCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCc--
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEI--YPDN--------CETLKALGHIYVQLGQIEKAQELLRKAAK---IDPRD-- 81 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~-- 81 (760)
.+..++......++.+++..|..++.. .|.+ ......+|.+|...|++.+-.......-. .-+..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 367777888888899999999999874 2222 35678899999999998776555544322 22211
Q ss_pred HHHHHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 82 AQAFIDLGELLI--SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 82 ~~~~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
......+...+. .+.+..-+..+..+++-........ ...+-..+..+|+..++|.+|+.....++..-
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rEl-------- 158 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLREL-------- 158 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------
Confidence 112222222222 2345555666666655443321000 12334567888999999999998887776520
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCcHHH
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-----QDYVDA 233 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~ 233 (760)
+.+...+....++..-..+|+...+..+|...+..+-... |....+
T Consensus 159 -----------------------------KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 159 -----------------------------KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred -----------------------------HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 0111233345566666777777788888877776664321 222222
Q ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHHcC---CChHHHH---HHHHHHhhcCCHHHH--HHHHHHhhhcCCCCChHHH
Q 004339 234 Y--LRLAAIAKARNNLQLSIELVNEALKVNG---KYPNALS---MLGDLELKNDDWVKA--KETFRAASDATDGKDSYAT 303 (760)
Q Consensus 234 ~--~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~---~la~~~~~~g~~~~A--~~~~~~al~~~~~~~~~~~ 303 (760)
- +.-|.++..-.+|.-|..+|-.+++-+. .+..+.. .+-.+-...+..++. +-.-+.++. ..+.+..++
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~-y~g~~i~Am 288 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK-YAGRDIDAM 288 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh-ccCcchHHH
Confidence 1 2224445555778888888888776542 1222222 222222233333333 333344444 333355666
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++.. +... ...+|..|+.-|..-+..+|
T Consensus 289 kavAeA-~~nR----------SLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 289 KAVAEA-FGNR----------SLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHH-hcCC----------cHHHHHHHHHHhHHHHhcCh
Confidence 555555 3221 12677777777777666655
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=2.4 Score=45.42 Aligned_cols=238 Identities=13% Similarity=-0.013 Sum_probs=132.3
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 269 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 269 (760)
..|..+...+..+.++...|+.+.|+.++...+... .-..-+++.+|.++.-..+|..|...+..+.....-..-.|.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 456677777778888888888778888887777511 112345667788888888888888888887776655444444
Q ss_pred HHH-HHHhh--------cCCHHHHHHHHHHhh---hcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHH
Q 004339 270 MLG-DLELK--------NDDWVKAKETFRAAS---DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 337 (760)
Q Consensus 270 ~la-~~~~~--------~g~~~~A~~~~~~al---~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 337 (760)
.++ -+++. .|+-+.|..+++... ...|.+.+.-- .-..+|..+-.
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~-----------------------f~~RKverf~~ 398 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK-----------------------FIVRKVERFVK 398 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH-----------------------HHHHHHHHHhc
Confidence 444 33322 123333333332221 11121111110 11111211111
Q ss_pred HHHhhCCCCHHH--HHHHHHHHHH--cCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 338 RVIVQHTSNLYA--ANGAGVVLAE--KGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 338 ~al~~~p~~~~~--~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
+. ..++..+.+ ++.++.++-. .....+.. -+...+ ..|....+ +..-.++.+|.++..+|+-..|..+|..+
T Consensus 399 ~~-~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~-~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~ 475 (546)
T KOG3783|consen 399 RG-PLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAEL-ENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQ 475 (546)
T ss_pred cc-cccccccccchHHHHHHHHhhcccCChhhHH-HHHHHH-hccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 011111111 2333333321 11222222 111111 23322111 22335677899999999999999999998
Q ss_pred Hhhhc-CCCc----HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC
Q 004339 413 LRKFY-YNTD----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 413 l~~~~-~~~~----~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 455 (760)
+.... ...+ |.++|.+|..|+.+|. ..+|..++.+|-....++
T Consensus 476 ~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 476 VEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 85421 1122 8899999999999999 999999999999877443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.33 Score=43.52 Aligned_cols=140 Identities=12% Similarity=0.074 Sum_probs=96.7
Q ss_pred hcHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 327 THLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
+..++|+..|..+-+-.-.. ..+....|.+....|+...|+..|..+-.-.|.... ..-.+.+.-|.++...|-|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-GRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHHHhccccHHH
Confidence 67777777777655543322 335677788889999999999999988776642100 112345666788899999988
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
-....+..-.- .+|-...+.-.||.+-++.|++..|..+|.+... +...|....+.+.++..+
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 77666544332 2333466777899999999999999999998876 545556666666665443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.99 E-value=3.1 Score=49.06 Aligned_cols=61 Identities=20% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhc-CCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 267 ALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
.......+|+-..++.+|-..+...-.. .......+++..|.+ +... ++-+-|...|..+.
T Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~ 867 (932)
T PRK13184 806 LLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCY-LALT------------EDREAAKAHFSGCR 867 (932)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHH-HHhc------------CchhHHHHHHhhcc
Confidence 4445556667777888887777433221 112244556666666 5555 66666666666655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.87 Score=49.70 Aligned_cols=244 Identities=10% Similarity=0.057 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
++.+|..+|......-.++.|...|-+.-.... ..+...+.. ...
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G-------------------------ik~vkrl~~----------i~s 735 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG-------------------------IKLVKRLRT----------IHS 735 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccc-------------------------hhHHHHhhh----------hhh
Confidence 479999999988887788888887766543110 000000000 000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCChHHHHHHHHHHh
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLEL 276 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 276 (760)
--...|.+-.--|.|++|.+.|-.+-..+ .-..++...|++-...++++..-.-. .....++..+|..+.
T Consensus 736 ~~~q~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 736 KEQQRAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred HHHHhHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH
Confidence 11233445555689999998886553221 12334556677766665554321111 112348889999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004339 277 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 356 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (760)
....|..|.++|...-... ++..+ |+.. ..|..- +.+...-|.+...+-.+|.+
T Consensus 808 ~~~~We~A~~yY~~~~~~e---------~~~ec-ly~l------------e~f~~L----E~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDTE---------NQIEC-LYRL------------ELFGEL----EVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHhccchH---------hHHHH-HHHH------------HhhhhH----HHHHHhcCcccchHHHHHHH
Confidence 9999999999998654321 12333 4443 334332 33334457888888899999
Q ss_pred HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 357 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 357 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
+...|.-++|.+.|-+.- .|.+ .......++++.+|.++-++. .-|.-..+....+.-+...+
T Consensus 862 f~svGMC~qAV~a~Lr~s----------~pka---Av~tCv~LnQW~~avelaq~~----~l~qv~tliak~aaqll~~~ 924 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLRRS----------LPKA---AVHTCVELNQWGEAVELAQRF----QLPQVQTLIAKQAAQLLADA 924 (1189)
T ss_pred HHhhchHHHHHHHHHhcc----------CcHH---HHHHHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHhhc
Confidence 999999999998886542 1221 223456667788887765432 12222223333444455667
Q ss_pred cHHHHHHHHHHH
Q 004339 437 QWQDCKKSLLRA 448 (760)
Q Consensus 437 ~~~~A~~~~~~a 448 (760)
+.-+|++.++++
T Consensus 925 ~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 925 NHMEAIEKDRKA 936 (1189)
T ss_pred chHHHHHHhhhc
Confidence 777777777665
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.079 Score=45.25 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhh
Q 004339 385 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 461 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 461 (760)
.....+++|+++.... +..+.+.+++..+..-+....-+.+++|+..+++.|+|+.++.+....++..|+|..+.--
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3667788999998776 4667889999988732223338889999999999999999999999999999999876543
Q ss_pred HHHH
Q 004339 462 AGVA 465 (760)
Q Consensus 462 la~~ 465 (760)
--.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 3333
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.15 Score=49.06 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcCCHHH-------HHHHHHHHHhhhcCCC----cHHHHHH
Q 004339 361 GQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFAL-------AMKMYQNCLRKFYYNT----DAQILLY 427 (760)
Q Consensus 361 g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~~~~~----~~~~~~~ 427 (760)
..++.|+..|.-|+-... +..+...+.+++.+|++|..+|+... |+..|.+++.....|. ...+++.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345566665555554321 00111235677788888888887444 4444444444322221 2677888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
+|.++.+.|++++|+.+|.+++...-
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 88888889999999988888886543
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=2 Score=41.92 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHHcC--CChHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVN---EALKVNG--KYPNA 267 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~p--~~~~~ 267 (760)
..+|+-....+++++|+..|.+++.... ....+...++.+|...|++..--.... .+...+. ....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5677778888999999999999996532 223467889999999998765443332 2222221 11112
Q ss_pred HHHHH-HHHhhcCCHHHHHHHHHHhhhcCCCCC-----hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 268 LSMLG-DLELKNDDWVKAKETFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 268 ~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
...+. .+-.....++.-+..+...++...... ...-..+..+ ++.. |.|..|+....-++.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l-~y~~------------~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYL-LYKT------------GKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc------------ccHHHHHHHHHHHHH
Confidence 21111 112223345555555555554322110 0111233444 5666 899999988776654
Q ss_pred h------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 342 Q------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 342 ~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
- .|+-..++..-..+|....+..++...+..|.........|.. +..-..-|...+.-.+|.-|..+|-.++
T Consensus 154 ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 154 ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 2 2444556667778888888888888888777665421111111 1222333666777789999999999999
Q ss_pred hhhcC
Q 004339 414 RKFYY 418 (760)
Q Consensus 414 ~~~~~ 418 (760)
.-|..
T Consensus 234 Egft~ 238 (421)
T COG5159 234 EGFTL 238 (421)
T ss_pred hcccc
Confidence 87644
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.037 Score=39.38 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=22.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 54 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 54 (760)
+|.+|..+++.|+|..|..+++.+|+..|+|..+....
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 45566666666666666666666666666665554443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.071 Score=44.16 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCC
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCE---TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 96 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 96 (760)
+|..++..|++-+|+.+.+.++..++++.. .+..-|.++..+ +......+....+.+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl~------- 62 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLLG------- 62 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHHH-------
Confidence 467789999999999999999998887653 444445555433 2222222222222222
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 97 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 97 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
++++|.++..+.|.. +..++.+|.-+-...-|.+++...++++.+
T Consensus 63 ---sve~~s~a~~Lsp~~-----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 ---SVECFSRAVELSPDS-----AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---hHHHHHHHhccChhH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 455666666666664 566666666666666666666666666544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.16 Score=47.37 Aligned_cols=105 Identities=10% Similarity=0.170 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----H
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----A 422 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~ 422 (760)
..++..+|..|...|+++.|+..|.++.....+.. ...++++++..+.+..+++.....++.++-.......+ .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 34788999999999999999999999988753211 34678899999999999999999999999887655554 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
.+...-|..+...++|..|...|-.++.-..
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 3455677788889999999999987765543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.3 Score=40.71 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=70.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcC----CCCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC----CCc-
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASG----SVFV---QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD- 421 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~- 421 (760)
|.-...-|-|.+|...+.++++.... ..|. -+..++-.|+..+..+|+|++++..-..++..|.. ..+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 34445678999999999999987631 1111 12456778899999999999999999988887632 112
Q ss_pred ----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 422 ----AQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 422 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
+.+.+..|.++...|+.++|+..|+.+.++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 556678889999999999999999998765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.016 Score=37.73 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
++..||.+|..+|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.84 Score=44.01 Aligned_cols=101 Identities=12% Similarity=0.193 Sum_probs=61.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.||.+|+..|.|..-..++.+.-.......-. ....+|..-..+|..+++-..-..+|++++..-..-++|.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 47777777777777666666665544311100 12344555566777777777777777777775434444333
Q ss_pred H----HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 425 L----LYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 425 ~----~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
. -+=|..+...|+|++|...|-.|++-.
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 3 234556777788888877777777654
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.027 Score=54.75 Aligned_cols=73 Identities=25% Similarity=0.343 Sum_probs=57.4
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
+..|.-....|+.++|..+|+.++.+.|.++.++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4455556777888888888888888888888888888888887788888888888888888888877766554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.7 Score=45.29 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHH------------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCC---------
Q 004339 210 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGK--------- 263 (760)
Q Consensus 210 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~--------- 263 (760)
...|.+|...|.-+... +|.+++.++.++.++..+|+.+-|..++.+++=. .|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34567777777776644 4677899999999999999999888877776632 221
Q ss_pred -------ChH---HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHH
Q 004339 264 -------YPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 333 (760)
Q Consensus 264 -------~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 333 (760)
+-. +++.....+...|.|..|.++++-++.+.|..++.....+..+..++. .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------------HhHHHHH
Confidence 111 223334445678999999999999999999878888777776623333 6666666
Q ss_pred HHHHHH-----HhhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhc
Q 004339 334 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 378 (760)
Q Consensus 334 ~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p 378 (760)
.+++.. +..-|+..+ -..+|..|..... -..|...+.+|+...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666654 334455443 2345666665544 5678889999998876
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.36 Score=53.11 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004339 519 THVEYCKHLLDAAKIHREA 537 (760)
Q Consensus 519 ~~~~~~~~~l~~~~~~~~~ 537 (760)
.+++..+.+|.+.+...++
T Consensus 214 Kgv~~~qe~La~~qe~eE~ 232 (1064)
T KOG1144|consen 214 KGVRAMQEALAKRQEEEER 232 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.099 Score=51.96 Aligned_cols=75 Identities=20% Similarity=0.176 Sum_probs=61.5
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+..+-.+|...+++..|+.+.+.++...|+++.-+...|.+|.++|.+..|+.-++..+...|+++.+-.....+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 345666778888999999999999999999888888899999999999999998888888888888776554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.13 Score=46.02 Aligned_cols=85 Identities=24% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
.-+..++.+..+-...++.+.+..++..+--+.|..+..-..-|.+++..|++.+|+.+|+.+....|..+.+--.++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34556778888889999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred Hc-cCC
Q 004339 92 LI-SSD 96 (760)
Q Consensus 92 ~~-~~~ 96 (760)
+. .++
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 77 554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.39 Score=46.20 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=71.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.++.|+..|.-|+-...-..... .+.++..+|++|...|+.+....++.+|+..-
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y----------------------- 148 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFY----------------------- 148 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH-----------------------
Confidence 56677777776664433221111 36778899999999999777777777776521
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH-HHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-DAYLRLAA 239 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~ 239 (760)
..++.... .....-+...+++.+|.++.+.|++++|..+|.+++....... ..+..+|.
T Consensus 149 ------~~a~~~e~-~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 149 ------EEAYENED-FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred ------HHHHHhCc-CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 11111111 1112224567899999999999999999999999997543222 34444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.27 Score=44.00 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.-...+..+..+-...++.+.+..++..+--+.|..+..-+.-|.++...|++.+|+.+|+.+....|..+.+-..++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34567777888888889999999999999899999999999999999999999999999999988889999999999999
Q ss_pred HhhcCCHH
Q 004339 275 ELKNDDWV 282 (760)
Q Consensus 275 ~~~~g~~~ 282 (760)
+...|+..
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 98888743
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=3.3 Score=41.61 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=157.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--cCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHcCCChH-
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFK--YQDY--------VDAYLRLAAIAKARNNLQLSIELVNEAL---KVNGKYPN- 266 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~- 266 (760)
+..+......+++.+++..|..++.. .|.. -.....++.++...|+..+-..++...- ...+....
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 55666666777788899999888864 2221 2356788999999998877655544332 22222111
Q ss_pred -HHHHHHH-HHhhcCCHHHHHHHHHHhhhcCCCCCh-----HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 267 -ALSMLGD-LELKNDDWVKAKETFRAASDATDGKDS-----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 267 -~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
+...+.. +....+....-+..+...++....... ..-..+..+ |+.. ++|.+|+.+....
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~L-y~d~------------~~YteAlaL~~~L 154 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRL-YNDT------------KRYTEALALINDL 154 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHhh------------HHHHHHHHHHHHH
Confidence 1111211 122223344445555544443221110 111234555 7777 9999999887766
Q ss_pred Hhh----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CC-chHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 340 IVQ----H--TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQ-MPDVWINLAHVYFAQGNFALAMKMYQN 411 (760)
Q Consensus 340 l~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 411 (760)
+.- + +.-+.++..=..+|....+..+|...+..|......-.. |. .+.+-..-|.++..-.+|.-|..+|-.
T Consensus 155 ~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyE 234 (411)
T KOG1463|consen 155 LRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYE 234 (411)
T ss_pred HHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHH
Confidence 542 2 223345556677788888999999888888765421111 11 122233447777777899999999999
Q ss_pred HHhhhcCCCc-HHH---HHHHHHHHHHhccHHHHHHH--HHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHH
Q 004339 412 CLRKFYYNTD-AQI---LLYLARTHYEAEQWQDCKKS--LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVR 485 (760)
Q Consensus 412 al~~~~~~~~-~~~---~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~ 485 (760)
++.-|..-.+ +.+ +-++-.|-..++..++-... -+.+++....+..+.-.+|.++ ..|.+.++.
T Consensus 235 AfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~----------~nRSLkdF~ 304 (411)
T KOG1463|consen 235 AFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAF----------GNRSLKDFE 304 (411)
T ss_pred HHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHh----------cCCcHHHHH
Confidence 9998754444 333 33344444455666654443 3556665555555555555543 357778888
Q ss_pred HHHHHHHHH
Q 004339 486 STVAELENA 494 (760)
Q Consensus 486 ~a~~~l~~A 494 (760)
.|+..|..-
T Consensus 305 ~AL~~yk~e 313 (411)
T KOG1463|consen 305 KALADYKKE 313 (411)
T ss_pred HHHHHhHHH
Confidence 888777643
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=7.8 Score=45.82 Aligned_cols=360 Identities=9% Similarity=-0.026 Sum_probs=186.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCcHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQL----G---QIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
..+....+++....|+.|+..|+++....|.. .++.+.+|..+..+ | .+.+|+.-|++.- -.|.-|--|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 555 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEY 555 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHH
Confidence 34566677888899999999999999999874 67888888877654 2 4778888887653 456677778
Q ss_pred HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 86 IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 86 ~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
+..|.+|. .|+|.+-+++|.-|++..|..+.-.. ..+.+.|-.+.+ .+-..|....--++...|......
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----- 628 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLY--KHRREALVFMLLALWIAPEKISSR----- 628 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCcccccch-----
Confidence 88888888 78999999999999999988732110 111222222221 122344444444444433111000
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCC-----ccCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNH-----VELPWNKVT-VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 236 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 236 (760)
....++..+..-... +...|.... ..+.+-.. +-.|..---..+|+++....|- .+...
T Consensus 629 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 693 (932)
T PRK13184 629 ------------EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FWSGFTPFLPELFQRAWDLRDY--RALAD 693 (932)
T ss_pred ------------HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HHhcCchhhHHHHHHHhhcccH--HHHHH
Confidence 001112211111111 111111111 11111111 1224444445566666655443 56666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----cCCChH--------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKV-----NGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
.-.+...+|.++-+.......-.. .|.+.. .+..-..+......++++...+.. +.+. ...
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~ 767 (932)
T PRK13184 694 IFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPT---LIL 767 (932)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHH---HHH
Confidence 666777888887665554433321 122111 111112223333456666553332 1111 111
Q ss_pred HHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC
Q 004339 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 383 (760)
Q Consensus 304 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 383 (760)
+ +-. ++......... ..-+-.+++.+.+...-.............+|....++.+|-.++...-... ...
T Consensus 768 ~-~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 837 (932)
T PRK13184 768 Y-AFD--LFAIQALLDEE----GESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDL---LLD 837 (932)
T ss_pred H-HHH--HHHHHHHHhcc----chHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhh---hcc
Confidence 1 111 11110000000 0122223333222221111223345556677778888888888774322111 111
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+...++...|..+...++-.-|...|..+..
T Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 838 EYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred ccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 4567788888888888888888888888874
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.22 Score=41.35 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=35.9
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 376 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 376 (760)
..+-.++++|.++..+.|..+..++.+|.-+-....|.++..-.++++.+
T Consensus 58 ~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 58 RYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 44556778888888888888777777777666666677777666666654
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=4.8 Score=43.22 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 65 EKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 143 (760)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 143 (760)
....+.+.......|.++...+..+.++. .|+.+.|+..+...+...-. ....-.++.+|.++..+.+|..|...+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k---Q~~~l~~fE~aw~~v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK---QVKSLMVFERAWLSVGQHQYSRAADSF 326 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444555555667877777777777666 67788888888877762111 112456677888888888888888888
Q ss_pred HHHhccc
Q 004339 144 KDALGDG 150 (760)
Q Consensus 144 ~~al~~~ 150 (760)
..+.+..
T Consensus 327 ~~L~des 333 (546)
T KOG3783|consen 327 DLLRDES 333 (546)
T ss_pred HHHHhhh
Confidence 8887643
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.22 Score=40.34 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Q 004339 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQAFIDLGELL 92 (760)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 92 (760)
.+..+++.+..+|++..+.+.+|..+...|+++.|+..+-.++..++++ ..+...+-.++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999988765 33433333333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.29 E-value=3 Score=40.33 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCChH-HHHHHHHHHhhcCC
Q 004339 211 HDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYPN-ALSMLGDLELKNDD 280 (760)
Q Consensus 211 g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~~~~la~~~~~~g~ 280 (760)
..+++|+..|++++.+.|.- ..++-.+..+++.++++.+-+..|.+++..- .+..+ ....+-..-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 48899999999999988753 3466778888999999999998888877532 22222 11222222223334
Q ss_pred HHHHHHHHHHhhhc---CCCC--ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC----------
Q 004339 281 WVKAKETFRAASDA---TDGK--DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---------- 345 (760)
Q Consensus 281 ~~~A~~~~~~al~~---~~~~--~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------- 345 (760)
..--..+|+..+.. .... .......||.+ |+.. +.|.+-...+.+.-.....
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl-~fd~------------~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKL-YFDR------------GEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhh-heeH------------HHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 44444444443331 1110 11123467888 8877 7777666666655433211
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-
Q 004339 346 --NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD- 421 (760)
Q Consensus 346 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 421 (760)
-..+|..-..+|..+.+-..-..+|.+++.+...-.+|-. ..+.-.=|..+++.|+|.+|-..|-.|.+.+....+
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp 267 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP 267 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc
Confidence 1234444566777888888888899999988652222211 111222356678889999999988888887644333
Q ss_pred --HH--HHHHHHHHHHHhc
Q 004339 422 --AQ--ILLYLARTHYEAE 436 (760)
Q Consensus 422 --~~--~~~~la~~~~~~g 436 (760)
.. -|+-||..+.+.|
T Consensus 268 RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 268 RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred chhHHHHHHHHHHHHHHcC
Confidence 22 3445566666554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.034 Score=34.46 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
.+++.+|.++..+|+++.|+.+|.+++.+.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777766664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.13 E-value=5.1 Score=44.36 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=15.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
..++.|+...++..-+..+.++..+-.
T Consensus 821 ~~~Rg~L~rkr~~~ri~~~~K~~~l~k 847 (1259)
T KOG0163|consen 821 RIARGYLARKRHRPRIAGIRKINALLK 847 (1259)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 455556666666666666666655543
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.8 Score=46.52 Aligned_cols=177 Identities=17% Similarity=0.020 Sum_probs=115.2
Q ss_pred CHhHHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--chhhhhcccchhhhhh
Q 004339 96 DTGAALDAFKTARTLLKKAG-------EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG--IWLTLLDSKTKTYVID 166 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~ 166 (760)
-|.+|...|.-++...+.+. .+.+...+..++.+...+|+.+.|...+.++|=.- .+.+.... .
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~-------~ 325 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIP-------F 325 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccc-------c
Confidence 58889888888887766543 35578899999999999999999998888876310 00000000 0
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHH-
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKV---TVLFNLARLLEQIHDTVAASVLYRLILFKYQD-YVDAYLRLAAIA- 241 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~- 241 (760)
.+ .....-..|.+- .+++.....+.+.|-+..|.+++.-++.++|. ++.+...+..+|
T Consensus 326 sg-----------------~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 326 SG-----------------NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cc-----------------cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 00 000001233333 34455566677889999999999999999997 777777766666
Q ss_pred HHcCCHHHHHHHHHHH-----HHHcCCChHHHHHHHHHHhhcCC---HHHHHHHHHHhhhcCCC
Q 004339 242 KARNNLQLSIELVNEA-----LKVNGKYPNALSMLGDLELKNDD---WVKAKETFRAASDATDG 297 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 297 (760)
++..+|.=-+.+++.. +...|+.+ .-..++.+|..... -..|...+.+|+...|.
T Consensus 389 LrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 389 LRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4555666566655544 23334433 23355666666555 57888889999988774
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.049 Score=33.65 Aligned_cols=30 Identities=50% Similarity=0.864 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP 45 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 45 (760)
+++.+|.+++..|++..|+.+|.+++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555555555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=3.2 Score=37.52 Aligned_cols=128 Identities=17% Similarity=0.099 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC--h--HHHHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD-Y-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--P--NALSMLGDL 274 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~--~~~~~la~~ 274 (760)
|.-+.-+...+..++|+..|..+-+..-. + ..+.++.+.+....|+...|+..|..+-...|-. . .+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 34444555667778888887776654422 2 3456677777778888888888887766544321 1 134455566
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
+...|.|+......+.+-.-..+....+.-.||.. -++. |++..|...|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglA-a~ka------------gd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLA-AYKA------------GDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHH-HHhc------------cchHHHHHHHHHHHc
Confidence 66777776665555443322211123333344444 4444 555555555555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.37 Score=48.00 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.+.++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|..-++..+...|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4455666777777888888888888777787777777777778888888888777777777777777765544443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.36 Score=39.09 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=48.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
+..+++.+..+|++..+.+.+|..+...|+++.|++.+-.++..+++. .+..+.-.+-.++..+|.-+.-..-|+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~---~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY---EDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC---CCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---cccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 455677788888888888888888888888888888888888877632 334555555555555555443333333
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=7.3 Score=41.01 Aligned_cols=103 Identities=8% Similarity=0.161 Sum_probs=55.1
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHH---HHHHHHHHc----CCHHHHHHHHHHHHhhh-cCCCcHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI---NLAHVYFAQ----GNFALAMKMYQNCLRKF-YYNTDAQILLYLAR 430 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~la~~~~~~----g~~~~A~~~~~~al~~~-~~~~~~~~~~~la~ 430 (760)
..|+.++|+..+-..-.+.| +...... .+..++-.. |..-...+.+.-+-++. .+..+..++-+.+.
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEP-----DVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAAL 784 (831)
T ss_pred ccccHHHHHHHHHhhhccCc-----cHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHh
Confidence 35778888888777766666 3332221 122222111 11111111111111111 24555666666666
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
-...+.+|.+|+.+|++.-+.+.....+...+..|.
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (831)
T PRK15180 785 NAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCI 820 (831)
T ss_pred hHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Confidence 677889999999999998887644433444455543
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.55 E-value=6.6 Score=40.53 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=93.0
Q ss_pred hcHHHHHHHHHHHHhhC----CC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQH----TS-----NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~----p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~la~~~ 396 (760)
+.+.+|..+-...+... -. ....|+.+..+|...|+...-...+...+.... .......+...+.|-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 67777777666554321 11 234677788888888987777777776665543 111223455667778899
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
+..+.|+.|-....++.---...++ +..++++|++..-+++|..|.++|-+|+...|++..+
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~al 283 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAAL 283 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhh
Confidence 9999999998887766421111122 7788999999999999999999999999999986444
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.081 Score=51.75 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=62.6
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA-LGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
++....|+++..|...+......|-|.+--..|.+++..+|.|++.|.. -+.-+...+++..+...|.++++.+|.+|.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3445567777777777777777777777788888888888888877776 445566667888888888888888888777
Q ss_pred HHHHHHH
Q 004339 84 AFIDLGE 90 (760)
Q Consensus 84 ~~~~la~ 90 (760)
.|+..-.
T Consensus 178 iw~eyfr 184 (435)
T COG5191 178 IWIEYFR 184 (435)
T ss_pred HHHHHHH
Confidence 7765443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.2 Score=52.00 Aligned_cols=125 Identities=10% Similarity=0.090 Sum_probs=103.3
Q ss_pred hhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 326 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
.|++-.|-.-...++...|..+......+.+...+|.|+.|...+.-+-.+.. ....+...+-.....+|+++.|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~-----s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG-----TTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc-----CCchHHHHHHHhhhchhhHHHH
Confidence 48899999999999999999999999999999999999999998877766554 3345556666778889999999
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 406 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 406 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...-.-.+.. .-.++++....+.....+|-+++|..+|++.+.++|....
T Consensus 377 ~s~a~~~l~~--eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 377 LSTAEMMLSN--EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHhcc--ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 9988777763 4556778777777778899999999999999999886533
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.6 Score=43.46 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-ChhHHhhH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS-NYTLRFDA 462 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 462 (760)
.-.++..+|..|...|+++.|++.|.++...+..+.. ..+++.+.++.+..|++.....++.++-.+-.. ......+.
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3567889999999999999999999999997655444 888999999999999999999999998776432 11222222
Q ss_pred HHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004339 463 GVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 463 a~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
-.||..+ ..-+.+.|..|-.+|-......
T Consensus 115 lk~~~gL--------------~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGL--------------ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHH--------------HHHHhchHHHHHHHHHccCcCC
Confidence 2333222 2234567788888876665433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=4.3 Score=40.48 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=107.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHH
Q 004339 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314 (760)
Q Consensus 235 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~ 314 (760)
+.+.....+..+...-++....++.++|....++..++.-.. --..+|...|+++++.... . |...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~-----~-------yr~s 253 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET-----I-------YRQS 253 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH-----H-------HhhH
Confidence 344445556666777777778888888888888887775322 2366777888877765322 0 1111
Q ss_pred HhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 004339 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL--YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392 (760)
Q Consensus 315 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l 392 (760)
.....--..++...+.+ .++ ++-..|+.|..++|+..+|++.|+...+-.|-. ....++-+|
T Consensus 254 ------------qq~qh~~~~~da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~---t~lniheNL 317 (556)
T KOG3807|consen 254 ------------QQCQHQSPQHEAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL---TMLNIHENL 317 (556)
T ss_pred ------------HHHhhhccchhhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH---HHHHHHHHH
Confidence 00000000111111222 222 334467888888899999998888887766621 234455666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH-------------HHhcc---HHHHHHHHHHHHHhCCCCh
Q 004339 393 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH-------------YEAEQ---WQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~-------------~~~g~---~~~A~~~~~~al~~~p~~~ 456 (760)
...+....-|......+-+.-++ ..|..+.+.+.-+.+- .+.|- -..|++.+.+|++.+|.-|
T Consensus 318 iEalLE~QAYADvqavLakYDdi-slPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 318 LEALLELQAYADVQAVLAKYDDI-SLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCc
Confidence 66666655554443333332222 2233333322221111 11111 1248899999999999887
Q ss_pred hHHhhH
Q 004339 457 TLRFDA 462 (760)
Q Consensus 457 ~~~~~l 462 (760)
.....+
T Consensus 397 kYLLE~ 402 (556)
T KOG3807|consen 397 KYLLEM 402 (556)
T ss_pred HHHHHH
Confidence 655544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.15 Score=49.90 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.-...|.-....|+.++|..+|..++.+.|.++.++..+|.+....+++-+|-.+|-+++.+.|.+..++.+.+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4445566667889999999999999999999999999999999999999999999999999999999888766543
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.52 Score=55.52 Aligned_cols=179 Identities=19% Similarity=0.146 Sum_probs=128.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHH------HHHHH-HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-------- 77 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 77 (760)
...-.+..|+..+..|.+.+|.. ++... -.+.|..+..+..++.++...|+++.|+..-.++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34456778888888899988887 56533 3457888999999999999999999999998887644
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchh
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAG---EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 153 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 153 (760)
.|+....+.+++.... ..+...|+..+.++..+..-.. .+....+..+++.++...+.++.|+.+++.|+......
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 2555667777776655 5688889988888877653321 22235666889999999999999999999998632100
Q ss_pred hhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004339 154 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 226 (760)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 226 (760)
.....-.....+..+++++...+++..|+........+
T Consensus 1091 -----------------------------------~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1091 -----------------------------------LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred -----------------------------------cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 00011224456667788888888888777766655543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.2 Score=39.31 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=86.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
-+..+.......+..+++..+..++..+--+.|+.+..-..-|.++...|++.+|+.+|+.+..-.+..+.+.-.++.|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34456666677778999999999999998999999999999999999999999999999999988888787777788877
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 147 (760)
. .|+ ..|...+......+...+|+...+...
T Consensus 89 ~al~D------------------------p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 89 NAKGD------------------------AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HhcCC------------------------hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 6 543 234444555555566666666655554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.04 E-value=2.1 Score=35.88 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPD------------NCETLKALGHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 76 (760)
-|...+..|-|.+|...+.+++..... +.-++-.|+.++..+|+|++++.....++.
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345567788999999999999876422 245677788888888888888777766653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.69 Score=54.58 Aligned_cols=174 Identities=13% Similarity=0.063 Sum_probs=127.1
Q ss_pred hcHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKE------LYT-RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~ 396 (760)
+.+..|.. ++. ....++|.....+..++.++...|++++|+.+-.++.-+.. +...+.....+.+++...
T Consensus 946 ~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~ 1025 (1236)
T KOG1839|consen 946 DGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYE 1025 (1236)
T ss_pred cchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHH
Confidence 45554444 665 33446888899999999999999999999998888765543 333446678899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhh-----c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh-HHhhHHHHHHHH
Q 004339 397 FAQGNFALAMKMYQNCLRKF-----Y-YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT-LRFDAGVAMQKF 469 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~-----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 469 (760)
+..++...|+..+.+++.+. + .|+-..+..+++.++...+.++.|+.+++.|+...-.-.. -....+.++..+
T Consensus 1026 f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~ 1105 (1236)
T KOG1839|consen 1026 FAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHAL 1105 (1236)
T ss_pred HhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHH
Confidence 99999999999999988763 2 2333666678999999999999999999999985422111 112233333333
Q ss_pred HHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004339 470 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 505 (760)
Q Consensus 470 ~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~~~ 505 (760)
+.....+.++..++.....+..+|.......
T Consensus 1106 -----a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~ 1136 (1236)
T KOG1839|consen 1106 -----ARLFESMKDFRNALEHEKVTYGIYKEQLGPD 1136 (1236)
T ss_pred -----HHHHhhhHHHHHHHHHHhhHHHHHHHhhCCC
Confidence 3556677788999999999888887665433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.87 E-value=7.5 Score=42.50 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=30.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004339 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 75 (760)
Q Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 75 (760)
-..|+..|.+++|...---.+ -..-|..||.-.+..=+++-|...|.++-
T Consensus 563 m~q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 563 MYQYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred chhhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 345677788777754321111 11236677776666667788887777664
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.13 Score=53.98 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=82.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
|.++..++.-|.-.+..+.+..|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...++.++|....+|+.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 344555555666666667788899999999999999888888888888775 56667888888888999988889999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
|+.++. .+.+.+|+.+...+....|.+
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 998877 678888888888777777743
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.79 Score=37.53 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
...|+|..|++.+.+.+........+. ...++.++|.++...|++++|+..++.++.......|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 356777777777777776654221111 2345666777777777777777777777776544444
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=93.63 E-value=8.5 Score=38.42 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHHhhh---------------cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 263 KYPNALSMLGDLELKNDDWVKAKETFRAASD---------------ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
.++..+..+|..|...|++..|..+|-..-. ...+.....+...+.+.|... +
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l------------~ 155 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCL------------G 155 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHT------------T
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh------------c
Confidence 4566777777777777777777766632211 112224455555555545555 8
Q ss_pred cHHHHHHHHHHHHhh
Q 004339 328 HLEKAKELYTRVIVQ 342 (760)
Q Consensus 328 ~~~~A~~~~~~al~~ 342 (760)
+...|...+...++.
T Consensus 156 n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 156 NLRDANELFDTFTSK 170 (260)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888877766655
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=5.5 Score=36.33 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=24.5
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----cC--ChHHHHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-----KG--QFDVSKDLFTQVQEA 376 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g--~~~~A~~~~~~al~~ 376 (760)
+++..|+..|..+-. .+.+.+...+|.++.. .+ +..+|..++.++-.+
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 455556666655544 2344555555555442 12 245566666666554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.57 E-value=1 Score=39.66 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
...+..+...-...+++.++..++..+--+.|.....-..-|.++...|++.+|+.+|..+....+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34555556666668888888888888888889888888888889999999999999998888877777888888888888
Q ss_pred hcCCH
Q 004339 277 KNDDW 281 (760)
Q Consensus 277 ~~g~~ 281 (760)
..|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 77764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.12 Score=48.42 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=56.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 22 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
......++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|.+.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4567789999999999999999999999999999999999999999999999999999764
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=13 Score=39.78 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=29.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.-|....++++|+.++..+++.+..+..+.-.+...+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 456667889999999999998888777776666555443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=93.32 E-value=9.5 Score=38.05 Aligned_cols=140 Identities=14% Similarity=0.032 Sum_probs=66.7
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
.-.++..+..+|..|...|++..|..+|-.. ++...... +...... .-.|.....+..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~---------------~~~~~e~dlfi~ 145 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWST---------------KGYPSEADLFIA 145 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHH---------------HTSS--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHH---------------hcCCcchhHHHH
Confidence 3467899999999999999998888777533 22222111 1111111 223444444444
Q ss_pred HHH-HHhhcCCHHHHHHHHHHhhhc----CCC--------CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHH
Q 004339 271 LGD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 337 (760)
Q Consensus 271 la~-~~~~~g~~~~A~~~~~~al~~----~~~--------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 337 (760)
.+. .|+..++...|...+...+.. .|. .....+++...+ +...+.... ...|..-...|.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~ 218 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYK 218 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhC
Confidence 433 366678888887766555443 221 012223333333 222211111 033444445555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHH
Q 004339 338 RVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 338 ~al~~~p~~~~~~~~la~~~~~ 359 (760)
..|..+|.....+..+|.+|+.
T Consensus 219 ~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 219 PSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp H---HHHHTHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHHHHHCC
Confidence 5555666666666667776664
|
; PDB: 3LKU_E 2WPV_G. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.7 Score=45.42 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=62.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 284 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 284 (760)
.....++++.+..+.... .+-|.- ..-...++..+...|.++.|+.+. .++...+.|+ +..|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence 334567777776666411 111211 333556666777777777776553 2344444443 566777776
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 364 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 364 (760)
....... .++..|..||.. .+.. |+++-|..+|.++- -+..|..+|.-.|+.+
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~-AL~~------------g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDE-ALRQ------------GNIELAEECYQKAK--------DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHH-HHHT------------TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HH
T ss_pred HHHHHhc------CcHHHHHHHHHH-HHHc------------CCHHHHHHHHHhhc--------CccccHHHHHHhCCHH
Confidence 6654321 145566777777 6666 77777777776632 1234555555666654
Q ss_pred HHHHHH
Q 004339 365 VSKDLF 370 (760)
Q Consensus 365 ~A~~~~ 370 (760)
.-..+.
T Consensus 391 ~L~kl~ 396 (443)
T PF04053_consen 391 KLSKLA 396 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.23 Score=48.68 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=73.4
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 190 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR-LAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 190 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
....|+++..|...+......|.|..--..|..++..+|.+++.|.. -+.-+...+++..+...|.+++..+|.+|.+|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34667888999999988889999999999999999999999999987 55567788999999999999999999999988
Q ss_pred HHHHHH
Q 004339 269 SMLGDL 274 (760)
Q Consensus 269 ~~la~~ 274 (760)
+..-.+
T Consensus 180 ~eyfr~ 185 (435)
T COG5191 180 IEYFRM 185 (435)
T ss_pred HHHHHH
Confidence 765443
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.61 E-value=15 Score=38.50 Aligned_cols=190 Identities=14% Similarity=0.018 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC
Q 004339 264 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 343 (760)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 343 (760)
+.+....-|.+-+-.|+-.++...+..+....-+.....++.|.....+.. .+...|+.+|..+--..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 334444555555666777777777765544332223333333333322223 67778888888877777
Q ss_pred CCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 344 TSNLY---AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 344 p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
|.... ++-.-..+....|+.+++..+-.+.+....++.+..+ .+..++..+...++-. -...+...+..+..+.
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~--F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ--FAQRFVDLVVRLDDEI-RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH--HHHHHHHHHHhccccc-cHHHHHHHHHhcCchh
Confidence 76543 3333333446788888888888888887775544332 2333333333333221 2233666666554444
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
...+|+.+++.-.-.|+.+-|.-.-.+|+.+... ...-...+.+|...
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHH
Confidence 5888999999999999999999999999988733 44444455555443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.93 Score=38.98 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 196 KVTVLFNLARLLEQIHD---TVAASVLYRLILF-KYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~-~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
.....+++|.++....+ ..+.+.+++.+++ .+| ..-.+.+.|+..+++.++|+.++.+++.++...|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45678888888887654 5578889999996 455 345678889999999999999999999999999998887655
Q ss_pred HHHH
Q 004339 271 LGDL 274 (760)
Q Consensus 271 la~~ 274 (760)
.-.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=8.3 Score=35.20 Aligned_cols=112 Identities=10% Similarity=0.156 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HcCChHHHHHHHHHH
Q 004339 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA-----EKGQFDVSKDLFTQV 373 (760)
Q Consensus 299 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a 373 (760)
.+.+...||.. +..++ .+|+.|..+|..--.-+ ..+...+.+|..++ ..+++..|+..|..+
T Consensus 33 ~Pe~C~lLgdY--lEgi~----------knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~a 99 (248)
T KOG4014|consen 33 RPESCQLLGDY--LEGIQ----------KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIA 99 (248)
T ss_pred CchHHHHHHHH--HHHHH----------HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHH
Confidence 66777777775 22211 78999999888754433 24455566666554 345889999999998
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 374 QEAASGSVFVQMPDVWINLAHVYFAQG-------NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 374 l~~~p~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
-.. +.+.+..++|.+++.-. +...|..++.++-.+ .+..+.++|...|..
T Consensus 100 C~~-------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----~~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 100 CDA-------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----EDGEACFLLSTMYMG 156 (248)
T ss_pred hcc-------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----CCchHHHHHHHHHhc
Confidence 875 45888888888876533 478899999998875 556666666655543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.2 Score=34.37 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
...-|.-++...+..+|+..+.+++...+++.+ ..++-+|..+|...|+|.+++.+--.-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667888899999999999998666555 667778888999999999988876554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=14 Score=36.99 Aligned_cols=122 Identities=14% Similarity=0.057 Sum_probs=78.6
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH-HH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE-LL 92 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~ 92 (760)
...-+.+-+...+..+...-+.....++.++|..+.++..|+.--. --..+|..+|+++++...... .... +.
T Consensus 184 ~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~y----r~sqq~q 257 (556)
T KOG3807|consen 184 LRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIY----RQSQQCQ 257 (556)
T ss_pred cChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHH----hhHHHHh
Confidence 3344566677777888888888888999999999988888876433 346788888888886532211 1111 11
Q ss_pred ccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 93 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 93 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
..|...+|.. +.+.+ ....+-..|+.|..++|+..+|++.|+.+.+..|
T Consensus 258 h~~~~~da~~------rRDtn----vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 258 HQSPQHEAQL------RRDTN----VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhccchhhhh------hcccc----hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222222211 11111 1244557789999999999999999999887554
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.03 E-value=5.4 Score=41.43 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.++.-|.+.|..|+-++|.++|+.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344556677777777777777766654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.36 Score=32.18 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAA 377 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 377 (760)
+++++|.+|...|++.+|+.++.+++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 44555555555555555555555555443
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.97 E-value=24 Score=39.44 Aligned_cols=21 Identities=29% Similarity=0.736 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+.+-.+++.-|.|.+ |.+.++
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMk 770 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMK 770 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHh
Confidence 444556666666654 555555
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.34 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.++.+||.+|...|++.+|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566677777777777777777666654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.53 E-value=7.8 Score=36.33 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
+++...+.||..|. ..+..+|+.+|.+++++.+.... -+++++..|+.+|..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-FNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666666665 55677777777777777653311 35788888888888888887775
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.3 Score=36.33 Aligned_cols=61 Identities=26% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHHccCCHhHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 89 GELLISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 89 a~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
...+..++|..|++.+.+.+.......... ...++.++|.++...|++++|+..++.++.+
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334446778888777777776655543222 2456788999999999999999999999975
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.28 E-value=8.3 Score=41.75 Aligned_cols=76 Identities=26% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
...++..+...|.++.|+.+. .++...+.|| .+.|+++.|...... .+++..|..||...+..|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence 334445555555555554432 2233333332 355555555444321 224445555555555555
Q ss_pred CHHHHHHHHHHh
Q 004339 280 DWVKAKETFRAA 291 (760)
Q Consensus 280 ~~~~A~~~~~~a 291 (760)
+++-|..+|.++
T Consensus 362 ~~~lAe~c~~k~ 373 (443)
T PF04053_consen 362 NIELAEECYQKA 373 (443)
T ss_dssp BHHHHHHHHHHC
T ss_pred CHHHHHHHHHhh
Confidence 555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=32 Score=39.38 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=78.0
Q ss_pred hcHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNL----YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
.+.+.|...+.+.....+-+. .++..+|.-....+....|..++..+.... .+...+-....+.+..+++
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~------~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS------QSTSLLERRVRMALGTGDR 328 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc------CCcHHHHHHHHHHHHccCH
Confidence 677888888887655443332 234444544444433677888877665332 2334444445566688999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..+...+...-.. ........|++|+++...|+..+|..+|.++..
T Consensus 329 ~~~~~~i~~L~~~--~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 329 RGLNTWLARLPME--AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHhcCHh--hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8887777764332 234588999999999999999999999999854
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=28 Score=38.41 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
.++.+-|.-+++..+|..++++|...+...|.+ ......++.||..+.+.+.|.+++..+-+.+|.++-.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345666777888899999999999999877643 44567788999999999999999999999999999888888
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 272 GDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
..+....+.-.+|+.+........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888888899999999888776654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.09 E-value=12 Score=40.66 Aligned_cols=127 Identities=15% Similarity=-0.014 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCChHHHHH--HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 250 SIELVNEALKVNGKYPNALSM--LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
++..+...+.++|.++.++.. +...+...+....+...+...+...|. ...+..+|+.. .... |
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~a-le~~------------~ 115 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAA-LELD------------G 115 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHH-HHHh------------h
Confidence 344444444455555554322 344455555555555555556655555 44555555554 2222 3
Q ss_pred cHHHHH-HHHHHHHhhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 328 HLEKAK-ELYTRVIVQHTSNLYAANGA------GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 328 ~~~~A~-~~~~~al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
....+. .....+....|.+..+...+ +..+..+|+..++.....++..+.| .++.+...+...
T Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p-----~~~~~~~~~~~~ 185 (620)
T COG3914 116 LQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP-----KYPRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh-----hhhhhHhHHHHH
Confidence 333333 33333555566655544443 6666677777777777777777777 555554444444
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.04 E-value=6.2 Score=42.85 Aligned_cols=131 Identities=16% Similarity=-0.045 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANG--AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
....++..+...+.++|.++..+.. +...+...+....+.-.+..++..+| .++.+..+||......|..-.+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNP-----ENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCc-----ccchHHHHHHHHHHHhhhHHHH
Confidence 3334566666666778888776433 46677788999899999999999998 8899999999998888877777
Q ss_pred HHHHHH-HHhhhcCCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 406 MKMYQN-CLRKFYYNTDAQILLYL------ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 406 ~~~~~~-al~~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+..+.. +.. ..+.+..+...+ ++....+|+..++...+.+++.+.|.++.+...+...
T Consensus 121 ~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 121 LADISEIAEW--LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHh--cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 666665 555 356665555555 8888888999999999999999999997766665554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.55 E-value=2.5 Score=39.56 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004339 63 QIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 140 (760)
Q Consensus 63 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 140 (760)
.-..|...|-++-... -+.+...+.||..|...+..+|+..+-+++.+.+.. ....++++..|+.+|..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3466777776554321 247888999999999889999999999999998765 2456899999999999999999885
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.98 Score=47.79 Aligned_cols=90 Identities=12% Similarity=0.073 Sum_probs=70.5
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
.+....|+..|.+++...| .....+.+.|.++++.+ +.-.|+.....++.+ +|....+++.|++++..++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~-----~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--n~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVP-----DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--NPSIQKAHFRLARALNELT 459 (758)
T ss_pred hHHHHHHHHHHHHHhhhcc-----chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--ChHHHHHHHHHHHHHHHHh
Confidence 3456778888999998888 77888888888888876 344555555566663 5666889999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCh
Q 004339 437 QWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~ 456 (760)
++.+|+.+...+....|.+.
T Consensus 460 r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hHHHhhhhHHHHhhcCchhh
Confidence 99999999888888888653
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.27 E-value=18 Score=37.70 Aligned_cols=135 Identities=10% Similarity=0.041 Sum_probs=98.0
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC----
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---- 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---- 400 (760)
.-++.-+.+...++..+|+...+|+...+++.+.+ ++..=+.+..++++.+| .+..+|...=.+.....
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~-----RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDP-----RNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCc-----ccccchHHHHHHHHHHhcccc
Confidence 45677788888999999999999999999999776 46788899999999998 55555555444443332
Q ss_pred CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH------hcc------HHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 401 NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE------AEQ------WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
...+=+.+..+++.. +..+..+|.+...++-. .|+ ...-+..-..|+-.+|+|..+|+..-.++..
T Consensus 164 ~~~~El~ftt~~I~~--nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 164 LEKEELEFTTKLIND--NFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred cchhHHHHHHHHHhc--cchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 256667888888884 66667777777666552 232 2234556677888899999999886555443
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=90.11 E-value=18 Score=35.89 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhcc
Q 004339 363 FDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQ 437 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~ 437 (760)
....+.++.+++....... ......+...+|..|+..|+|+.|+.+|+.+...+....- ..++..+..|+..+|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3345566666665543110 0123456778999999999999999999999877643333 6677788999999999
Q ss_pred HHHHHHHHHHHH
Q 004339 438 WQDCKKSLLRAI 449 (760)
Q Consensus 438 ~~~A~~~~~~al 449 (760)
.+..+.+.-+.+
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 988877655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.44 Score=44.85 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 266 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 266 (760)
......++.+.|.+.|.+++.+.|.....|+++|....+.|+++.|...|.+.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34456678888888888888888888888888888888888888888888888888886543
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.9 Score=44.37 Aligned_cols=99 Identities=12% Similarity=0.020 Sum_probs=74.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcc-----hHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN-----KVTVLF 201 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-----~~~~~~ 201 (760)
|..++++++|..|.--|..++.+|.....+ .+.....+. ...+..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~------------------------------~k~~~~~~~di~~vaSfIet 232 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAAL------------------------------SKPFKASAEDISSVASFIET 232 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhc------------------------------cCCCCCChhhHHHHHHHHHH
Confidence 667889999999999999998865321111 111111111 223456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 202 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
.|..||..+++.+.|+....+.+-.+|.+...++..|.++..+.+|.+|...+-
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998876543
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.6 Score=42.89 Aligned_cols=62 Identities=29% Similarity=0.336 Sum_probs=34.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 23 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
.+...++++.|..+..+.+..+|.++.-+.-.|.+|.++|.+.-|+..+...+...|+.+.+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34455555555555555555555555555555555555555555555555555555555444
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.3 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHH--HHHHHHhCCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKS--LLRAIHLAPS 454 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 454 (760)
+.++.+|-.++.+|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666666 3355555543
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=89.17 E-value=15 Score=35.96 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
..+|.+....|+|++.+.++.+++..+|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3444455555555555555555554443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=88.94 E-value=9.9 Score=39.48 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
-..|..||..+++.+.|+....+.+.++| ..+.-++..|.|+..+.+|.+|.+.+--+.-++
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP-----~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNP-----SYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588999999999999999999999998 778888999999999999999988877766654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.36 E-value=14 Score=40.48 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=55.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 342 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
++-.....+..++..+.....+.-|.++|.++-... .+..++...+++++|..+-++.-+. -
T Consensus 742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------------siVqlHve~~~W~eAFalAe~hPe~-----~ 803 (1081)
T KOG1538|consen 742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------------SLVQLHVETQRWDEAFALAEKHPEF-----K 803 (1081)
T ss_pred cchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------------HHhhheeecccchHhHhhhhhCccc-----c
Confidence 344455566666666667777777777776654332 3345566777888887765543221 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
+.+|+-.|+.+....++.+|.+.|.+|
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 556677777777777777776666554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.45 E-value=0.88 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=9.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 004339 389 WINLAHVYFAQGNFALAMKMY 409 (760)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~ 409 (760)
.+.+|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444444444433
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.06 E-value=2.2 Score=42.45 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTAR 108 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al 108 (760)
|..=+....++++. ....++..++..+...|+++.++..++..+..+|.+-..|..+-..|. .|+...|+..|.++-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55555556665543 346788889999999999999999999999999999988888888877 789999999999888
Q ss_pred HHHH
Q 004339 109 TLLK 112 (760)
Q Consensus 109 ~~~~ 112 (760)
+...
T Consensus 215 ~~~~ 218 (280)
T COG3629 215 KTLA 218 (280)
T ss_pred HHhh
Confidence 7543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=86.82 E-value=2 Score=27.74 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 004339 51 LKALGHIYVQLGQIEKAQEL 70 (760)
Q Consensus 51 ~~~la~~~~~~g~~~~A~~~ 70 (760)
++.+|..+..+|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.78 E-value=49 Score=35.60 Aligned_cols=228 Identities=12% Similarity=0.016 Sum_probs=129.4
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
|-+...+..+-.++.....+.-...++.+++... .+-.+++.++.+|... ..++-..+.++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3444555566666666666667777888888754 5667889999999888 5566778888888888888888888888
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC-CHH-HHH
Q 004339 274 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLY-AAN 351 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~ 351 (760)
.|.. ++-..+..+|.+++...-+....+ .+-.+ +..... ..-.+.+.-+....++-..... ... ++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~--~i~ev-WeKL~~-------~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNA--AIKEV-WEKLPE-------LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhh--hHHHH-HHHHHH-------hccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 8776 788899999998886432101000 00111 111100 0002333333333332221111 111 111
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
.+-.-|....++.+|+.++..+++.+. .+..+.-++...+ ...+....+.+-|.....+
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~-----k~~~ar~~~i~~l----------------Rd~y~~~~~~e~yl~~s~i 268 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDE-----KDVWARKEIIENL----------------RDKYRGHSQLEEYLKISNI 268 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcc-----hhhhHHHHHHHHH----------------HHHhccchhHHHHHHhcch
Confidence 122233455677777777777776654 3333332222211 1222233334445555555
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCC
Q 004339 432 HYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 432 ~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
-..-.++..|+.-|++.+.++..+
T Consensus 269 ~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 269 SQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhccccHHHHHHHHHHHheeccCc
Confidence 555567888999999999888776
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.76 E-value=65 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
..++...|..++..|++++|...|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 577788899999999999999999998863
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.61 E-value=4.1 Score=31.56 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=37.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHH
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---HIYVQLGQIEKAQELLRKAA 75 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al 75 (760)
....|.-++...+..+|+..+.+++...++.+..+..+| .+|...|+|.+++.+.-.-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777666655444443 45556677766666554433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=86.53 E-value=40 Score=34.23 Aligned_cols=188 Identities=14% Similarity=0.094 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
..+|+.+-.-+..+.|..|+++..++.+++...+... .......+..+...-.- ....
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~-lW~r------------ 269 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRS-LWDR------------ 269 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchh-hhhH------------
Confidence 4677777777788889889888888777654322110 11111011000000000 1111
Q ss_pred hcHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH-----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC
Q 004339 327 THLEKAKELYTRVIVQHTSNL-YAANGAGVVLAE-----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g 400 (760)
+-++++...+.+++....--+ ...-.++-++.. .-+|..-..+|.-...+.| +|.+-+|.+......-
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap------SPvV~LNRAVAla~~~ 343 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP------SPVVTLNRAVALAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC------CCeEeehHHHHHHHhh
Confidence 566777778888776643222 233334444442 3367777778887777776 4777788888887777
Q ss_pred CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH
Q 004339 401 NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 462 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 462 (760)
-...++.+.+.....-.-......+...|..+.++|+..+|...|.+++.+.++...-.+-.
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 78888888887766411122345566788999999999999999999999998876655443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.14 E-value=0.96 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFE 38 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~ 38 (760)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.6 Score=28.61 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
++..||.+-+..++|++|+..|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.65 E-value=5.4 Score=39.25 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 302 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 302 (760)
+=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.+.|.+.-|+..+...+...|. ++.+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~-~~~a 251 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD-DPIA 251 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC-chHH
Confidence 3344556666666776666777766776666666666777777777777666666666665 4443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.50 E-value=4.7 Score=40.15 Aligned_cols=63 Identities=19% Similarity=0.064 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
..++..++..+...|+++.++..+++.+..+|.+-.+|..+...|...|+...|+..|.++-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345555555555666666666666666666666666666666666666666666655555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=85.25 E-value=3.8 Score=28.64 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
...|..+-..|.+.|++++|.++|+..... .-.++...+..+-..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 455666666677777777777777776664 344455555444433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.79 E-value=1.7 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.++..||.+-...++|.+|+.-|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.88 E-value=86 Score=35.85 Aligned_cols=87 Identities=13% Similarity=-0.069 Sum_probs=35.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH------HHHHHHHHHh
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLEL 276 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~ 276 (760)
+..++.-.|+|+.|+.++-. .+.+..--..+|.++...|-+.-.-..-...+...+.++. ....+.. .+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH-TT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HH
Confidence 34567778999999999877 2222222233444444444333332222555555554432 2222222 34
Q ss_pred hcCCHHHHHHHHHHhhhc
Q 004339 277 KNDDWVKAKETFRAASDA 294 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~ 294 (760)
...+...|+.+|--+-..
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 566888999888765544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=83.55 E-value=26 Score=34.69 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEA 257 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 257 (760)
..+...+|..|+..|+++.|+.+|+.+..... -...+...+..|+...|+.+..+.+.-++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556788888888888888888888764432 12344556666777777777666554443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=83.27 E-value=48 Score=35.78 Aligned_cols=114 Identities=16% Similarity=0.036 Sum_probs=66.3
Q ss_pred hcHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hcCCCCCCchHHHHHHHHHHHHcC
Q 004339 327 THLEKAKELYTRVI----VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--ASGSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~la~~~~~~g 400 (760)
..++.|...|.++- ...+....+....+.++...|.+.+|...+-++... .........+.++-.+|.||
T Consensus 276 ~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~---- 351 (414)
T PF12739_consen 276 PYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY---- 351 (414)
T ss_pred HHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh----
Confidence 34566666676631 122233446666777777888888888777666655 21100000344555556666
Q ss_pred CHHHHHHHHHHHHhh-hcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 401 NFALAMKMYQNCLRK-FYYNT------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 401 ~~~~A~~~~~~al~~-~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..+.. .+.+. .+..+..-|.-|.+.|+...|..+|..|+.+...
T Consensus 352 ----------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 352 ----------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred ----------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00111 01011 1334445678899999999999999999988653
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=83.18 E-value=45 Score=36.01 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=23.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY 44 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 44 (760)
.-.+|..++..|+|+-|...|+.+.+-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3459999999999999999999987644
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.70 E-value=1.3 Score=49.84 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 004339 493 NAVRVFSHLS 502 (760)
Q Consensus 493 ~A~~~~~~l~ 502 (760)
+|+..|.++.
T Consensus 1258 ~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1258 EAIHRFDQFT 1267 (1516)
T ss_pred HHHhhhhhhe
Confidence 4445555444
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.65 E-value=31 Score=38.89 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 004339 528 LDAAKIHREAAER 540 (760)
Q Consensus 528 l~~~~~~~~~~~~ 540 (760)
++..+..|.+.++
T Consensus 216 v~~~qe~La~~qe 228 (1064)
T KOG1144|consen 216 VRAMQEALAKRQE 228 (1064)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555544443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.34 E-value=1e+02 Score=35.47 Aligned_cols=210 Identities=9% Similarity=-0.010 Sum_probs=124.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 204 ARLLEQIHDTVAASVLYRLILFKYQDYV----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+..-....+.+.|...+.......+-.. .++..+|.-....+...+|..++..+.... .+...+-....+.+..+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHcc
Confidence 3334456677889988887655544332 233444444444433567777777655332 23333444444556888
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
+|..+...+..+...... .....+-+|.. +... |+.+.|..+|.++.. +.+.+ ..|+.- +
T Consensus 327 dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa-~~~~------------g~~~~A~~~~~~~a~--~~~fY--G~LAa~--~ 386 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKE-KDEWRYWQADL-LLEQ------------GRKAEAEEILRQLMQ--QRGFY--PMVAAQ--R 386 (644)
T ss_pred CHHHHHHHHHhcCHhhcc-CHhhHHHHHHH-HHHc------------CCHHHHHHHHHHHhc--CCCcH--HHHHHH--H
Confidence 998888888775443222 45556666666 5556 999999999999744 33322 222221 2
Q ss_pred cCCh-H--HH-HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh
Q 004339 360 KGQF-D--VS-KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435 (760)
Q Consensus 360 ~g~~-~--~A-~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 435 (760)
+|.. . .. ...-...+. .. .....+..++..|....|...+..++.. .+..-...++.+....
T Consensus 387 Lg~~~~~~~~~~~~~~~~~~--------~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~----~~~~~~~~la~~A~~~ 452 (644)
T PRK11619 387 LGEEYPLKIDKAPKPDSALT--------QG--PEMARVRELMYWNMDNTARSEWANLVAS----RSKTEQAQLARYAFNQ 452 (644)
T ss_pred cCCCCCCCCCCCCchhhhhc--------cC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHC
Confidence 2321 0 00 000000000 11 2356788889999999999999888874 3455667788888899
Q ss_pred ccHHHHHHHHHHH
Q 004339 436 EQWQDCKKSLLRA 448 (760)
Q Consensus 436 g~~~~A~~~~~~a 448 (760)
|.+..|+....++
T Consensus 453 g~~~~ai~~~~~~ 465 (644)
T PRK11619 453 QWWDLSVQATIAG 465 (644)
T ss_pred CCHHHHHHHHhhc
Confidence 9999888776544
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.11 E-value=70 Score=33.55 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAE------------KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
....++.+-.+.+..+|....+|+..-.++.. ..-++.-+.+...++..+| ....+|..+.++
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~np-----ksY~aW~hR~w~ 118 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNP-----KSYGAWHHRKWV 118 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCc-----hhHHHHHHHHHH
Confidence 33567777777888899888887765444432 2245666778888999998 889999999999
Q ss_pred HHHcC--CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 396 YFAQG--NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE----QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 396 ~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
+.+.+ ++..=+.++.++++. ++.+...|.+.=.++.... ...+=+.+..+++.-++.|..+|.+...++..+
T Consensus 119 L~~~p~~~~~~EL~lcek~L~~--D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 119 LQKNPHSDWNTELQLCEKALKQ--DPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHhCCCchHHHHHHHHHHHHhc--CcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 99887 468889999999995 6777666655544444322 245667888999999999999999999887643
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=82.08 E-value=59 Score=32.65 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 004339 332 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 398 (760)
Q Consensus 332 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~ 398 (760)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++-... ..+.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-----Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-----PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999985543 347788899888887
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=81.95 E-value=17 Score=38.52 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
-++..|.+++.-+|+|..|++.+..+- ++. ..-.....+-...++
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~id-l~~----------------------------------~~l~~~V~~~~is~~ 167 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENID-LNK----------------------------------KGLYTKVPACHISTY 167 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccC-ccc----------------------------------chhhccCcchheehH
Confidence 345667788999999999999986541 110 000112455677889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILF 225 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~ 225 (760)
|.+|-+|..+++|.+|+..|..++-
T Consensus 168 YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 168 YYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988773
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=81.33 E-value=38 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=24.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc
Q 004339 22 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61 (760)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 61 (760)
..+...+.+...+.+++.++..++.++..+..+..+|...
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3344456666666666666666665666666666666543
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=80.75 E-value=5.6 Score=40.24 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+..+|..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 6678888888888888888888888888888888888888877654445666666655543
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 760 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 7e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-04 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 7e-08 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 3e-07 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 1e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-05 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 3e-04 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 5e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-30
Identities = 76/454 (16%), Positives = 153/454 (33%), Gaps = 72/454 (15%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
L + + GDF +A + ++ PDN L L I+ Q +++++ A K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+P A+A+ +LG + + A + A P I+ N+ G
Sbjct: 62 QNPLLAEAYSNLGNVY------KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
+ E A Q++ AL + + +
Sbjct: 116 DMEGAVQAYVSAL------------------------------------QYNPDLYC--- 136
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
V +L LL+ + A Y + ++ A+ L + A+ + L+I
Sbjct: 137 ----VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314
+A+ ++ + +A LG++ + + +A + A + + +L
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLAC-----V 246
Query: 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 374
+ ++ A + Y R I A L EKG ++D +
Sbjct: 247 YYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 375 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434
D NLA++ QGN A+++Y+ L + A LA +
Sbjct: 299 RLCPTH-----ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351
Query: 435 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
+ Q+ AI ++P+ + G +++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-23
Identities = 66/387 (17%), Positives = 129/387 (33%), Gaps = 70/387 (18%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y LG V + G + A+ ++ L + PD + L V G +E A + A +
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+P DLG LL AL + A+ KA E P +N+G + +G
Sbjct: 130 YNPDLYCVRSDLGNLL------KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
E A F+ A+ D N ++
Sbjct: 184 EIWLAIHHFEKAV------------------------------------TLDPNFLD--- 204
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
NL +L++ A Y L ++ + LA + + + L+I+
Sbjct: 205 ----AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314
A+++ +P+A L + + +A++ + A + + +L N
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHADSLNNLAN-----I 314
Query: 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 374
R + +E+A LY + + A + VL ++G+ + + +
Sbjct: 315 KREQGN--------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Query: 375 EAASGSVFVQMPDVWINLAHVYFAQGN 401
+ D + N+ + +
Sbjct: 367 RISP-----TFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-20
Identities = 69/352 (19%), Positives = 125/352 (35%), Gaps = 65/352 (18%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
+FI Y L + GD A+ + L+ PD LG++ LG++E+A+
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158
Query: 72 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVI 129
KA + P A A+ +LG + A A +KA P ++ N+G +
Sbjct: 159 LKAIETQPNFAVAWSNLGCVF------NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 130 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 189
E F+ A ++ AL
Sbjct: 213 LKEARIFDRAVAAYLRAL------------------------------------------ 230
Query: 190 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249
L N V NLA + + A YR + + DAY LA K + ++
Sbjct: 231 -SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
Query: 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 309
+ + N AL++ + ++L+ L +++ + + +A +R A + + A +L +
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLAS- 347
Query: 310 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 361
L+ + + L++A Y I + A + G L E
Sbjct: 348 ----VLQQQGK--------LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 2e-24
Identities = 56/456 (12%), Positives = 120/456 (26%), Gaps = 66/456 (14%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y GQV L +F A +++ L + E L ++ E L +
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST 262
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
DA L L ++ + D + A L + + ++L F +
Sbjct: 263 YSKEDAAFLRSLYMLKLNK--TSHEDELRRAEDYLS-SINGLEKSSDLLLCKADTLFVRS 319
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
F L E D +++
Sbjct: 320 RFIDVLAITTKIL------------------------------------EIDPYNLD--- 340
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
V L + + ++ ++ ++ + +L + N + +
Sbjct: 341 ----VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396
Query: 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314
+++ ++ ++ A + +A + A+ L LG
Sbjct: 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGM-----Q 450
Query: 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 374
+ A E + N GVV K + + F
Sbjct: 451 HMQLGN--------ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502
Query: 375 EAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432
+ + W NL H Y + A+ L DA + +A +
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVY 560
Query: 433 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
+ L ++ ++P+ A+++
Sbjct: 561 LHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 2e-22
Identities = 65/455 (14%), Positives = 140/455 (30%), Gaps = 41/455 (9%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 78
L ++ A EKVL+I + + L +Y G +A+ LL K +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 79 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-----------EVLNNIG 127
A ++ L+ D AL+ K + + G
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 128 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEND 186
++ F+ A + +K+AL ++D+K + + S +L + N
Sbjct: 208 QVYTNLSNFDRAKECYKEAL-------MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 187 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246
+ + + L+ L D + + Y + + D L A R+
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 306
+ + + L+++ + + ++ + K D + + L++
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPEKAVTWLAV 379
Query: 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 366
G Y+ + + +A+ +++ A G A +G+ D +
Sbjct: 380 G--IYYLCVNK-----------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 367 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 426
+T G+ ++ L + GN LA + Q+ + D +L
Sbjct: 427 ISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLN 479
Query: 427 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 461
L + Q A+ L +
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 3e-18
Identities = 49/410 (11%), Positives = 98/410 (23%), Gaps = 93/410 (22%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
+ F+ Y L + D ++ + + + L +
Sbjct: 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321
Query: 65 EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 124
+ K +IDP + + L ++G + + L+ + E+
Sbjct: 322 IDVLAITTKILEIDPYNLDVYPLHLASL--HESGEKNKLYLISNDLVDRHPEKA--VTWL 377
Query: 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 184
+G+ + + A + F + + +D + A
Sbjct: 378 AVGIYYLCVNKISEARRYFSKS-------STMDPQ------FGPA--------------- 409
Query: 185 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244
W A + A Y +Q YL L
Sbjct: 410 ---------WI------GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454
Query: 245 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 304
N+ L+ E + + + P L+ LG + D A F
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF---------------- 498
Query: 305 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 364
+ A L + G + +D
Sbjct: 499 -------------------------QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533
Query: 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414
+ D Q ++ +V +A VY + LA+ L
Sbjct: 534 AAIDALNQGLLLST-----NDANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 67/467 (14%), Positives = 145/467 (31%), Gaps = 39/467 (8%)
Query: 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 66
++ + G +F A+ ++ +E+ P+ + Y+ G +EK
Sbjct: 18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK 77
Query: 67 AQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125
E KA +I P ++A + S + A+ +L +L
Sbjct: 78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLER 136
Query: 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185
K E+ + T L S + S + +
Sbjct: 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN-TSSNYDTAYAL 195
Query: 186 DGNHVELPWNKVTVLFNLARLL--EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243
+ ++ ++ + +A L + + + ++ A
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303
+NNL + L+ E++ ++ N+ L ++ + + F+ A + +
Sbjct: 256 KNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAV-DLNPEYPPTY 313
Query: 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363
G + + AKE + + + N+Y +L ++G+F
Sbjct: 314 YHRGQ-----MYFILQD--------YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360
Query: 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFY 417
S+ F + + F +P+V A + +G+F A+K Y R K +
Sbjct: 361 TESEAFFNETKL-----KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415
Query: 418 YN--------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456
T T + E++ K L +A L P +
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 8e-17
Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 36/278 (12%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y L + + F+K +++ P+ T G +Y L + A+E +KA
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
++P + +I L LL F + + + P EV I ++G
Sbjct: 339 LNPENVYPYIQLACLL------YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
+F++A + + A L + + K +V +
Sbjct: 393 DFDTAIKQYDIA------KRLEEVQEKIHVGIGPL--------------IGKATILARQS 432
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
++ + + A L A + LA + + +IEL
Sbjct: 433 SQDPTQLDEEKFNA-------AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 255 NEALKVNGKYPNALSMLGDLEL-KNDDWVKAKETFRAA 291
++ + L E K ++A A
Sbjct: 486 EDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 1e-16
Identities = 37/364 (10%), Positives = 96/364 (26%), Gaps = 72/364 (19%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
+ G + A ++ + ++P + L
Sbjct: 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENS 292
Query: 65 EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEV 122
++ + +KA ++P + G++ L +K A+ +KA P +
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFI------LQDYKNAKEDFQKAQSLNPENVYP 346
Query: 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 182
+ + +++G+F + F +
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETK----------------------------------- 371
Query: 183 FENDGNHVELPWNKVTVLFNLARLLE---------QIHDTVAASVLYRLILFKYQDYVDA 233
E+P +L + ++ + + L +
Sbjct: 372 -LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430
Query: 234 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293
+I+L+ +A +++ + A L L+L+ + +A E F ++
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490
Query: 294 -ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 352
A + + EA ++K + + L
Sbjct: 491 LARTMDEKLQATTF-----------------AEAAKIQKRLRADPIISAKMELTLARYRA 533
Query: 353 AGVV 356
G++
Sbjct: 534 KGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 58/446 (13%), Positives = 121/446 (27%), Gaps = 74/446 (16%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
QV S F+ LE+ N + A LL A +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVN------------TSSNYDTAYALLSDALQ 201
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+ L++ + D + + + L G+ HF K
Sbjct: 202 RLYSATDEGYLVANDLLT----KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH-VELP 193
A ++++ L +Y+ A D + F V+L
Sbjct: 258 NLLDAQVLLQESIN-------LHPTPNSYIFLALT----LADKENSQEFFKFFQKAVDLN 306
Query: 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253
++ ++ + D A ++ + V Y++LA + + S
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366
Query: 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 313
NE P + ++ D+ A + + A
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK--------------------- 405
Query: 314 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 373
+ E H+ ++ + L + ++ +F+ + L T+
Sbjct: 406 -----RLEEVQEKIHVGIG------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454
Query: 374 QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433
E + I LA + A++++++ T + A T
Sbjct: 455 CELDP-----RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDE--KLQATTFA 505
Query: 434 EAEQWQD---CKKSLLRAIHLAPSNY 456
EA + Q + + L + Y
Sbjct: 506 EAAKIQKRLRADPIISAKMELTLARY 531
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 63/468 (13%), Positives = 133/468 (28%), Gaps = 44/468 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
G + + A+ + LE+ D L YV +G ++K E+ KA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 77 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135
+ P ++ + A+ IE + + +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS--IEPMLERNLNKQAMSK 125
Query: 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 195
+ A L+ +K + + S+ F F+ +
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA--SFFGIFKPELT------- 176
Query: 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255
N E ++ L + + KA + ++ N
Sbjct: 177 ----FANYDESNEA-----DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315
E K+ K +L G + +D + A E + A + +SY Y A +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY--------IYMALI 279
Query: 316 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375
++ + + + + ++N G + +D + F + +E
Sbjct: 280 MADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435
+ +I LA + + + F ++ RKF ++ + A +
Sbjct: 333 LDPEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDK 385
Query: 436 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 483
+ K AI L + + K + T T E
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 7e-20
Identities = 71/474 (14%), Positives = 146/474 (30%), Gaps = 49/474 (10%)
Query: 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 65
E+ + F Y L + +GD + + K LE+ PD + L LG+
Sbjct: 34 ELKEDPVF---YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFA 90
Query: 66 KAQELLRKAA-KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVL- 123
A L + D DA L L + F T E
Sbjct: 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150
Query: 124 ----------NNIGVIHFEKGEFESAHQSFKDAL-GDGIWLTLLDSKTKTYVIDASASML 172
F + E ++ ++ D + L + K +
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210
Query: 173 QF-KDMQLFHRFENDGNHV-ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 230
F K +LF + N +L L + +D + A + + +
Sbjct: 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI-ELFPR 269
Query: 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 290
V++Y+ +A I RN+ ++ALK++ + G + ++ +A + F
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329
Query: 291 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350
A + D ++ + + L E + + + L++ +
Sbjct: 330 AKEL-DPENIFPYIQLAC-----LAYRENK--------FDDCETLFSEAKRKFPEAPEVP 375
Query: 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY---------FAQGN 401
N +L +K FD + + E + ++ +++ +A + N
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELEN-----KLDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 402 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
F A + + + Q + LA+ + E + + LA +
Sbjct: 431 FIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 29/273 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
G + D A + +K +E++P + + I + KA K
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALK 298
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+D ++ + G++ L + A KA E P I + + + +
Sbjct: 299 LDSNNSSVYYHRGQMNFI------LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH-VELP 193
+F+ F +A + A D F + + +EL
Sbjct: 353 KFDDCETLFSEAK------RKFPEAPEVPNFFAEI----LTDKNDFDKALKQYDLAIELE 402
Query: 194 WNKVTVLFNLARLLEQIHDTVA---------ASVLYRLILFKYQDYVDAYLRLAAIAKAR 244
+ +A L+ + A+ L A + LA + +
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
Query: 245 NNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277
++ +I L E+ + L + E
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITFAEAA 495
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 42/460 (9%), Positives = 106/460 (23%), Gaps = 97/460 (21%)
Query: 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI---- 57
+ I P + + + + + +
Sbjct: 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157
Query: 58 ---------YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA------ALD 102
+ + + E ++ + D +L + S A A
Sbjct: 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 103 AFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160
F+ + + L + G+ F K + AH+ K A+ L +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI-------ELFPRV 270
Query: 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 220
+Y+ ++ + E + +
Sbjct: 271 NSYI------------------------------YMALIMADRNDSTEYYNY-------F 293
Query: 221 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 280
L + Y + N + + ++A +++ + L L + +
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK 353
Query: 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340
+ + F A + L ++ +KA + Y I
Sbjct: 354 FDDCETLFSEAKRK-FPEAPEVPNFFAE-----ILTDKND--------FDKALKQYDLAI 399
Query: 341 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-----------PDVW 389
G ++ + + + EA +
Sbjct: 400 ELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEA------TNLLEKASKLDPRSEQAK 452
Query: 390 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429
I LA + Q + A+ +++ + + A
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
GL Q++L+ D A+T FE+ ++ E L+A+ Q
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ-------- 498
Query: 72 RKAAKIDPRDAQA 84
+ + DP A+
Sbjct: 499 -QRIRSDPVLAKK 510
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 2e-21
Identities = 40/452 (8%), Positives = 98/452 (21%), Gaps = 48/452 (10%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
E + + L + L + + P + + L +++ +L
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 72 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVI 129
+A + P A AL+ + +L +A P + + + G
Sbjct: 130 CQAHGLTPEQVVAIASHDGGK------QALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183
Query: 130 HFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEN--- 185
+ A G L + + +L
Sbjct: 184 KQALETVQRLLPVLCQAHG-------LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
Query: 186 -DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244
V + L + + A L V A + +A
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-------QQVVAIASNSGGKQAL 289
Query: 245 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 304
+Q + ++ +A + + A++ G + + + A + A
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIA 348
Query: 305 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 364
S K +++ + + + A G
Sbjct: 349 SHDG-------------GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ 395
Query: 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424
+ Q + + A + +
Sbjct: 396 RLLPVLCQAHGLTP-----EQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPQQVVA 448
Query: 425 LLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456
+ E A+ +++
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 39/454 (8%), Positives = 90/454 (19%), Gaps = 38/454 (8%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
++ + A L++ + G + L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+ P A AL+ + +L +A P + + +
Sbjct: 67 LTPEQVVAIASHDGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
+ A G L + L L
Sbjct: 121 TVQRLLPVLCQAHG------LTPEQVVAIASHDGGKQALETVQALLPVLCQA---HGLTP 171
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
+V + + + + + V A +A +Q + ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314
+A + + A++ G + + + A + A S
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASNSG-----G 285
Query: 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 374
+ + +++ + + + A G + Q
Sbjct: 286 KQALET--------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 337
Query: 375 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434
Q + A + + +
Sbjct: 338 GLTP-----QQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASNGGGKQA 390
Query: 435 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
E Q L +A L P Q
Sbjct: 391 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 10/123 (8%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
E + G + L + L + + P+ + + L +++ +L
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435
Query: 72 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 131
+A + P+ A G AL++ + A + N+ V
Sbjct: 436 CQAHGLTPQQVVAIASNGGGR------PALESIVAQLSRPDPALAALT----NDHLVALA 485
Query: 132 EKG 134
G
Sbjct: 486 CLG 488
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 45/271 (16%), Positives = 77/271 (28%), Gaps = 47/271 (17%)
Query: 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61
+K E Y LG L+ G+ A K LEI P + + AL ++
Sbjct: 25 NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE 84
Query: 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPI 120
+ + A E RKA D R+A+ + G L A A +
Sbjct: 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA---SQDTLYPERS 141
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
V N+G++ + + A + F+ +L
Sbjct: 142 RVFENLGLVSLQMKKPAQAKEYFEKSL--------------------------------- 168
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
+ N V +A LL + + V A Y L + L +
Sbjct: 169 ---RLNRNQPS-------VALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSML 271
AK + + + ++
Sbjct: 219 AKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-18
Identities = 47/276 (17%), Positives = 85/276 (30%), Gaps = 50/276 (18%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
++ G V N K + + + LG Y+Q G E+A+ LRKA +
Sbjct: 9 HHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 77 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135
IDP A A L + + + A + ++ A + VLNN G +E+
Sbjct: 66 IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA-----RVLNNYGGFLYEQKR 120
Query: 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 195
+E A+Q +A D + Y +
Sbjct: 121 YEEAYQRLLEASQDTL-----------YPERSRV-------------------------- 143
Query: 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255
NL + Q+ A + L ++ L +A + + + +
Sbjct: 144 ----FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD 199
Query: 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
+ G+ +L + L +D A
Sbjct: 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)
Query: 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287
+ DAY++L R N + + + +AL+++ +A + L + + A E
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347
+R A + A + NY L +KR E+A +
Sbjct: 94 YRKALAS---DSRNARV---LNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPE 139
Query: 348 YAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405
+ G+V + + +K+ F + P V + +A + + + + A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPA 194
Query: 406 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
+ Y + N + LL R E L+ L P +
Sbjct: 195 RQYYDLFAQGGGQNARS--LLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 8e-08
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 260
L Q +T A V R L DA+ LA + + +L+ E +AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 261 NGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEK 319
+ + L+ G + + +A + A+ D + S +LG K
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL-----VSLQMK 155
Query: 320 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 379
+ +AKE + + + + + A +L ++ ++ ++ + +
Sbjct: 156 K--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 426
+ + + + A R + + + Q
Sbjct: 208 N-----ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-19
Identities = 55/455 (12%), Positives = 115/455 (25%), Gaps = 108/455 (23%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136
+ A G + ++G+
Sbjct: 66 LKMDFTAA--------------------------------------RLQRGHLLLKQGKL 87
Query: 137 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 196
+ A FK L + S + + QL + ++ ++
Sbjct: 88 DEAEDDFKKVL----------------KSNPSEQEEKEAESQLVK-----ADEMQRLRSQ 126
Query: 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 256
F+ A I IL + A + +I +
Sbjct: 127 ALDAFDGADYTAAITF-------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 257 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 316
A K+ A + L + D + R L L + ++
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC------------LKL-DQDHKRCFA 226
Query: 317 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 376
+ K+ KL L G++ + + V +
Sbjct: 227 HYKQVKKLNKLIES-----------------------AEELIRDGRYTDATSKYESVMKT 263
Query: 377 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436
SV + H + A+++ L+ + L A + E
Sbjct: 264 -EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEE 320
Query: 437 QWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQK 468
+ + + A ++ A +++
Sbjct: 321 MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 37/277 (13%), Positives = 76/277 (27%), Gaps = 49/277 (17%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
+ + D+ +A+T +K+LE+ + E + +++ G+ KA L
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 72 RKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL-------LKKAGEEVPIEVL 123
+ A+K+ + +AF + L D +L + L + + L
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237
Query: 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 183
G + A ++ +
Sbjct: 238 IESAEELIRDGRYTDATSKYESVM------------------------------------ 261
Query: 184 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243
+ + + E V + + V A + +L D V+A A
Sbjct: 262 KTEPSVAEY---TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 244 RNNLQLSIELVNEALKVNGKYPNALSMLGD--LELKN 278
+I+ A + N L LK
Sbjct: 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 20/258 (7%)
Query: 231 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 290
V+ +L L A L ++ + A+ + A + L A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 291 ASDATDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345
A + A L G+ A + K+ K + +E +
Sbjct: 63 V-IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKAD 118
Query: 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405
+ + + + + ++ E ++ A + +G A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKA 173
Query: 406 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFD 461
+ + + + + + ++ +Y+ + + + L + +
Sbjct: 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 462 AGVAMQKFSASTLQKTRR 479
+ SA L + R
Sbjct: 232 KKLNKLIESAEELIRDGR 249
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 14/126 (11%), Positives = 45/126 (35%), Gaps = 10/126 (7%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET----LKALGHIYVQLGQIEKAQELLR 72
+ ++ G + A + +E V++ P E + + H + + + +A +
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296
Query: 73 KAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 131
+ +++P + A D E + A+ ++ A+ + ++ +
Sbjct: 297 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ-----QIREGLEKAQR 351
Query: 132 EKGEFE 137
+ +
Sbjct: 352 LLKQSQ 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 66
+ L + A+ ++E E ++ + + L L Q +K
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-18
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 7/133 (5%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
L K ++ A ++++L+ P+N + L+A + V GQ + A + K +
Sbjct: 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116
Query: 77 IDPRDAQAFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134
++ + A I LG + L+ + K G+
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----QYARYRDGLSKLFTT 171
Query: 135 EFESAHQSFKDAL 147
+E A S + +
Sbjct: 172 RYEKARNSLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 4e-14
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 8/128 (6%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQEL 70
+ ++Q+ G + AL +EK+L++ DN LG+ Y + +K E
Sbjct: 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145
Query: 71 LRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVI 129
K + A G + ++ AR L+K P E + I
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLF------TTRYEKARNSLQKVILRFPSTEAQKTLDKI 199
Query: 130 HFEKGEFE 137
+ E
Sbjct: 200 LRIEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-12
Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 25/150 (16%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE----------------TLKALGHIYVQ 60
++ G A++ F + + + D E L Y +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP- 119
+KA ++ + P + E+ K A + +K +
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ------VCRGQEKDALRMYEKILQLEAD 120
Query: 120 -IEVLNNIGVIHFEKGEFES-AHQSFKDAL 147
+ +G ++ E E ++ L
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKL 150
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 66/244 (27%)
Query: 49 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 108
+ + ++ GQ +A R+ ++ + + S
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS-------------- 50
Query: 109 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168
E+ ++ + + + + ++ A+ +K+ L
Sbjct: 51 --------EISSKLATELALAYKKNRNYDKAYLFYKELL--------------------- 81
Query: 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228
+ N+V+ L A + A +Y IL
Sbjct: 82 ---------------QKAPNNVD-------CLEACAEMQVCRGQEKDALRMYEKILQLEA 119
Query: 229 DYVDAYLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287
D + A + L + +E + L K A G +L + KA+ +
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179
Query: 288 FRAA 291
+
Sbjct: 180 LQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 40/228 (17%)
Query: 230 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 289
VD L+ + A ++ + + +N +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 290 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 349
D S L A + + +KA Y ++ + +N+
Sbjct: 44 TNVDKNSEISSKLATELAL-----AYKKNRN--------YDKAYLFYKELLQKAPNNVDC 90
Query: 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKM 408
+ +GQ + ++ ++ + + + I L + Y+ ++
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLET 145
Query: 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456
L + +++ + SL + I PS
Sbjct: 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
K+++ P + + Y G +L + A + +KV+ +P E K L I ++
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILRIEKEV 206
Query: 65 EK 66
+
Sbjct: 207 NR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 219 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278
+ + + LA K N + E L+ + L ++++
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338
A + + + A + LGN+ Y+ EK K E +
Sbjct: 102 GQEKDALRMYEKIL-QLEADNLAANIFLGNY-YYLTAEQEK-----------KKLETDYK 148
Query: 339 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 373
+ T YA G+ +++ +++ +V
Sbjct: 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179
++ + E G+ A F+ + L ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-----------------------LNIDRTEM 40
Query: 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
++ D N + LA ++ + A + Y+ +L K + VD A
Sbjct: 41 YYWTNVDKNSEISS----KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGK 298
+ R + ++ + + L++ A LG+ L + K ET + K
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTK 155
Query: 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358
YA G + R EKA+ +VI++ S A +L
Sbjct: 156 MQYARYRDGL-----SKLFTTR--------YEKARNSLQKVILRFPST-EAQKTLDKILR 201
Query: 359 EKGQFD 364
+ + +
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 335 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 394
+T V + A + + +D + + ++ + A D A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAE 96
Query: 395 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAP 453
+ +G A++MY+ L+ N A ++L +Y AEQ + ++ + +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 454 SNYTLRFDAGVAMQK 468
R+ G++
Sbjct: 155 KMQYARYRDGLSKLF 169
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 41/259 (15%), Positives = 81/259 (31%), Gaps = 43/259 (16%)
Query: 17 YYGLGQVQLKLG-DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 75
++ +G L +G A K + A GH + + ++A AA
Sbjct: 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152
Query: 76 KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEK 133
++ + +G + K A +A P V++ +GV+ F+
Sbjct: 153 QLMKGCHLPMLYIGLEY------GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206
Query: 134 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 193
GE+++A + F DAL +
Sbjct: 207 GEWKTAEKWFLDAL----------------------------------EKIKAIGNEVTV 232
Query: 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253
+L NL + ++ A +R L Y + I N + +++
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292
Query: 254 VNEALKVNGKYPNALSMLG 272
+ AL + +++MLG
Sbjct: 293 FHTALGLRRDDTFSVTMLG 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 3e-16
Identities = 41/307 (13%), Positives = 88/307 (28%), Gaps = 34/307 (11%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
L + DF+ V+E P + L V+L + + L K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+ P + ++ +G G + AR L KA G +
Sbjct: 85 LYPSNPVSWFAVGCYY--LMVGHKNEH---ARRYLSKATTLEKTYGPAWIAYGHSFAVES 139
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM---LQFKDMQLFHRFENDGNH-V 190
E + A ++ A L + L++ E + +
Sbjct: 140 EHDQAMAAYFTAA-------QLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
Query: 191 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL---------FKYQDYVDAYLRLAAIA 241
+ V+ + + Q + A + L + L +
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 301
+ +++ +AL + + + S +G + ++ A + F A D++
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTF 305
Query: 302 ATLSLGN 308
+ LG+
Sbjct: 306 SVTMLGH 312
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 64/381 (16%)
Query: 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92
+ T + ++ +N + + +L + + +L + DP A L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 93 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGI 151
+ A + F + L+ +G + G E A + A
Sbjct: 67 --VELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRYLSKA----- 117
Query: 152 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 211
T L+ A W
Sbjct: 118 --TTLEKT------YGPA------------------------WI------AYGHSFAVES 139
Query: 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271
+ A Y + L + NN +L+ ++AL + + P + +
Sbjct: 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Query: 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF---AALRNEKRAPKLEATH 328
G + +N +W A++ F A + + T+ R K+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-------- 251
Query: 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388
+A + + + +V N + G + + G F+ + D F
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-----DDTFS 306
Query: 389 WINLAHVYFAQGNFALAMKMY 409
L H + A
Sbjct: 307 VTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Query: 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 75
P +G + + A F + L I P++ + +G + Q G+ + A++ A
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220
Query: 76 KIDPRDAQAFIDLGELLISSDTGAALDA---FKTARTLLKKAGEEVP--IEVLNNIGVIH 130
+ + ++ G + A ++A +P + IG IH
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280
Query: 131 FEKGEFESAHQSFKDAL 147
G FE+A F AL
Sbjct: 281 SLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 39/371 (10%), Positives = 108/371 (29%), Gaps = 66/371 (17%)
Query: 105 KTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162
K + T++ ++ + + ++V+ ++ H+ +F+ ++ +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM--------------- 49
Query: 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 222
E D H + L L + E L
Sbjct: 50 ---------------------EKDPFHASCLPVHIGTLVELNKANE-------LFYLSHK 81
Query: 223 ILFKYQDYVDAYLRLAAIAKARNNL-QLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 281
++ Y ++ + + + + +++A + Y A G +
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141
Query: 282 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341
+A + A+ L +G + A+ +++ +
Sbjct: 142 DQAMAAYFTAAQL-MKGCHLPMLYIGL-----EYGLTNN--------SKLAERFFSQALS 187
Query: 342 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ----VQEAASGSVFVQMPDVWINLAHVYF 397
+ + + GVV + G++ ++ F ++ + + + NL HV
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 398 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457
+A A+ ++ L +A + H +++ A+ L +
Sbjct: 248 KLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 458 LRFDAGVAMQK 468
G ++
Sbjct: 306 SVTMLGHCIEM 316
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
LG V KL + AL + L + P N T A+G+I+ +G E A + A
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298
Query: 77 IDPRDAQAFIDLGELL 92
+ D + LG +
Sbjct: 299 LRRDDTFSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 67
Y +G + +G+F +A+ F L + D+ ++ LGH +A
Sbjct: 273 YSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 4e-18
Identities = 55/379 (14%), Positives = 112/379 (29%), Gaps = 79/379 (20%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--- 61
+ G +++ A FEK LE P N E L +L
Sbjct: 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188
Query: 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-- 119
+ A + LR+A +++P + + L L + L+++A E+ P
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKL--HKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179
+VL + + K E + A + K AL
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKAL-------------------------------- 274
Query: 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
E N + + YR +F+ + + +
Sbjct: 275 -----------EYIPNNAYLHCQIG-------------CCYRAKVFQVMNLRENGMYGK- 309
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA--SDATDG 297
K + ++ + +A + N S+L L D + +A+ F+ + T
Sbjct: 310 -RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368
Query: 298 KDSYATLSLGNWNYF------AALRNEKRAPKLEATHLEKAK------ELYTRVIVQHTS 345
L GN+ + A+ + K+ EK K ++ + ++ +
Sbjct: 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGA 428
Query: 346 NLYAANGAGVVLAEKGQFD 364
+ A + + +
Sbjct: 429 DSEALHVLAFLQELNEKMQ 447
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 1e-15
Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 32/285 (11%)
Query: 6 EINKPHEFIFPYYG--LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 63
+N ++++ L +++ + + E+ LE P + L++ Y + +
Sbjct: 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262
Query: 64 IEKAQELLRKAAKIDPRDAQAFIDLGELL-------------ISSDTGAALDAFKTARTL 110
+KA ELL+KA + P +A +G L+ A
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322
Query: 111 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168
LKKA E V + + +H ++E A F+ L K +
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLRY 377
Query: 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228
+ ++ + V++ K + L++I ++ L K
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKIN-QKSREKEKMKDKLQKI---------AKMRLSKNG 427
Query: 229 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273
+A LA + + +Q + E L+ P+A S G+
Sbjct: 428 ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 6e-12
Identities = 55/442 (12%), Positives = 119/442 (26%), Gaps = 70/442 (15%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 78
L + + L DF + + L ++ GQ E A E LRKA ++
Sbjct: 23 NLMEGENSLDDFEDKVFY-RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 79 PRDAQAFIDLGELLISSDTGAA---LDAFKTARTLLKKAGEEVP----------IEVLNN 125
++ ++ L+ + + + + K E+
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 126 IG--VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 183
G + + E A F+ AL
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKAL------------------------------------ 165
Query: 184 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY----LRLAA 239
E + E + L+ + A R + D L+L
Sbjct: 166 EKKPKNPEFTSGLAIASYR----LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 299
+ + +LV EAL+ + L + D+ KA E + A + +
Sbjct: 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NN 280
Query: 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT-------RVIVQHTSNLYAANG 352
+Y +G Y A + + K EL + + + +
Sbjct: 281 AYLHCQIGC-CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 353 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412
+ A Q++ ++ F + V Q+ + + A+ +
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ-LYQMKCEDKAIHHFIEG 398
Query: 413 LRKFYYNTDAQILLYLARTHYE 434
++ + + + + + +
Sbjct: 399 VKINQKSREKEKMKDKLQKIAK 420
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 42/284 (14%), Positives = 81/284 (28%), Gaps = 36/284 (12%)
Query: 202 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 261
NL + D V YR + LA + + + ++E + +A ++
Sbjct: 23 NLMEGENSLDD-FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 262 ----------------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 305
G Y +G L K K S +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365
G W K E+AK + + + + N +G + +
Sbjct: 142 EG-WTRL----------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTD 421
S++ +++A + + + LA K+ + L K TD
Sbjct: 191 SQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465
L A+ + ++ + L +A+ P+N L G
Sbjct: 249 V--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 7e-18
Identities = 56/453 (12%), Positives = 116/453 (25%), Gaps = 84/453 (18%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
++ G + ++ + EK LG + GQ+ A A
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAVD 54
Query: 77 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135
DP + A+ + ++ + AAL L G + ++G+
Sbjct: 55 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-----TAARLQRGHLLLKQGK 109
Query: 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 195
+ A FK L K+ + + Q
Sbjct: 110 LDEAEDDFKKVL-----------KSNPSENEEKEAQSQLIKSD----------------- 141
Query: 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255
++ L + A D AA IL + A + +I +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315
A K+ A + L + D + R L L + ++
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC------------LKL-DQDHKRCF 248
Query: 316 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375
+ K+ KL + L G++ + + V +
Sbjct: 249 AHYKQVKKLN-----------------------KLIESAEELIRDGRYTDATSKYESVMK 285
Query: 376 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435
+ + H + A+++ L+ + L A +
Sbjct: 286 TEPSIAEYTVR-SKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIE 342
Query: 436 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
E + + + A ++ +R A +
Sbjct: 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 3e-17
Identities = 57/402 (14%), Positives = 114/402 (28%), Gaps = 61/402 (15%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K +
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 77 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL----------LKKAGEEVPIEVLNN 125
+ A + G LL+ A D FK + + ++ L +
Sbjct: 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
Query: 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185
+ F G++ +A L E
Sbjct: 149 QALNAFGSGDYTAAIAFLDKIL------------------------------------EV 172
Query: 186 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 245
EL + + I D + D +A+ +++ +
Sbjct: 173 CVWDAELRELRAECFIKEGEPRKAISD-------LKAASKLKNDNTEAFYKISTLYYQLG 225
Query: 246 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA--SDATDGKDSYAT 303
+ +LS+ V E LK++ + + ++ N A+E R +DAT +S
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285
Query: 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363
Y + + +A + + V+ N+ A + +
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345
Query: 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405
D + + QE + L
Sbjct: 346 DEAIQDYETAQEHNEND-----QQIREGLEKAQRLLKQSQKR 382
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 42/303 (13%), Positives = 85/303 (28%), Gaps = 53/303 (17%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
GD+ +A+ +K+LE+ + E + +++ G+ KA L+ A+K
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
Query: 77 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL-------LKKAGEEVPIEVLNNIGV 128
+ + +AF + L D +L + L + + L
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265
Query: 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 188
G + A ++ + + + +
Sbjct: 266 ELIRDGRYTDATSKYESVM------------------------------------KTEPS 289
Query: 189 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248
E V + + V A + +L D V+A A
Sbjct: 290 IAEY---TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346
Query: 249 LSIELVNEALKVNGKYPNALSMLGDLEL-----KNDDWVKAKETFRAASDATDGKDSYAT 303
+I+ A + N L + + D+ K R A + +Y
Sbjct: 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ-EIIKAYRK 405
Query: 304 LSL 306
L+L
Sbjct: 406 LAL 408
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 22/149 (14%)
Query: 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI------------YVQLGQ 63
+Y + + +LGD +L+ + L++ D+ + ++ G+
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272
Query: 64 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA---FKTARTLLKKAGEEVP- 119
A K +P A+ + E + A + + + P
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERI-----CHCFSKDEKPVEAIRVCSEVLQMEPD 327
Query: 120 -IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
+ L + + + ++ A Q ++ A
Sbjct: 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 23/254 (9%), Positives = 62/254 (24%), Gaps = 39/254 (15%)
Query: 230 YVDAYLRLAAI-----------------------AKARNNLQLSIELVNEALKVNGKYPN 266
+ + A L ++ + A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 267 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW-----NYFAALRNEKRA 321
A + L A + A L G+ A + K+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 322 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 381
K + +E + + + + + G + + ++ E
Sbjct: 121 LKSNPSE---NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD- 176
Query: 382 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 441
++ A + +G A+ + + NT+A ++ +Y+ +
Sbjct: 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELS 230
Query: 442 KKSLLRAIHLAPSN 455
+ + L +
Sbjct: 231 LSEVRECLKLDQDH 244
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 9/73 (12%), Positives = 24/73 (32%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
+ + + L + A+ ++E E ++ + + L L Q +K
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386
Query: 72 RKAAKIDPRDAQA 84
K + + +
Sbjct: 387 ILGVKRNAKKQEI 399
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 65/291 (22%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ---ELLRK 73
+ K ++ A+ F K+ ++ Y +L + + AQ E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 74 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHF 131
+ F G++L A + A + +++ IG +
Sbjct: 66 KVNATKAKSADFEYYGKIL------MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 132 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 191
KG F A Q + + +
Sbjct: 120 NKGNFPLAIQYMEKQI------------------------------------RPTTTDPK 143
Query: 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL---Q 248
V + L + + V A + +L + YL A A++
Sbjct: 144 -------VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196
Query: 249 LSIELVNEALKV--------NGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
L+ + ++V + A + N D VKA ++
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 29/264 (10%), Positives = 60/264 (22%), Gaps = 49/264 (18%)
Query: 17 YYGLGQVQLKLGDFRSALTNFE---KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 73
Y +L + A + E + + G I ++ GQ A + +
Sbjct: 40 YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99
Query: 74 AAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 132
A D + +G + + A+ + +V +G ++
Sbjct: 100 AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-----PKVFYELGQAYYY 154
Query: 133 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 192
E+ A SF L E N
Sbjct: 155 NKEYVKADSSFVKVL------------------------------------ELKPNIYIG 178
Query: 193 PWNKVTVLFNLARLLEQ---IHD-TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248
+ +Q V + ++A +A +
Sbjct: 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238
Query: 249 LSIELVNEALKVNGKYPNALSMLG 272
+ L ++ A+ L
Sbjct: 239 KADAAWKNILALDPTNKKAIDGLK 262
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
++N + G++ +K G A+ ++ ++ + +G + G
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124
Query: 65 EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEV 122
A + + K + D + F +LG+ + A + K E P
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYY------NKEYVKADSSFVKVLELKPNIYIG 178
Query: 123 LNNIGVIHFEKG---EFESAHQSFKDAL 147
+ + + A ++ +
Sbjct: 179 YLWRARANAAQDPDTKQGLAKPYYEKLI 206
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 23/228 (10%)
Query: 232 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
D R A NN +IE+ N+ P + + + A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 292 SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350
+ + + ++ Y+ L + + A + Y + + T+ L
Sbjct: 64 FSKVNATKAKSA----DFEYYGKILMKKGQ--------DSLAIQQYQAAVDRDTTRLDMY 111
Query: 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410
G KG F ++ + + P V+ L Y+ + A +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 411 NCLRKFYYNTDAQILLYLARTHYEAEQWQDC---KKSLLRAIHLAPSN 455
L L+ AR + + K + I +
Sbjct: 167 KVLELKPNIYIG--YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 31/324 (9%), Positives = 62/324 (19%), Gaps = 63/324 (19%)
Query: 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 105
N + + +A E+ K + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 106 TARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163
T G I +KG+ A Q ++ A+
Sbjct: 62 T----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV---------------- 101
Query: 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 223
+ D ++ + + + A
Sbjct: 102 --------------------DRDTTRLD-------MYGQIGSYFYNKGNFPLAIQYMEKQ 134
Query: 224 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 283
+ + L + + L++ D K
Sbjct: 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Query: 284 ---AKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338
AK + A G L N + KA +
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD--------KVKADAAWKN 246
Query: 339 VIVQHTSNLYAANGAGVVLAEKGQ 362
++ +N A +G + L
Sbjct: 247 ILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 31/282 (10%)
Query: 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI---ELVN 255
V F A L + ++ A ++ + K + Y R A L+ E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315
+ G + +K A + ++AA D D +G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGS-----YF 118
Query: 316 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375
N+ A + + I T++ G ++ + F +V E
Sbjct: 119 YNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 376 AASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLR------KFYYNTDAQILL 426
+ ++ A AQ LA Y+ + Y + +
Sbjct: 171 LKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 427 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
Y+A + + + L P+N + ++
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 11/92 (11%)
Query: 12 EFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKA--------LGHIYVQ 60
Y + A +EK++E+ K + + Y
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92
KA + +DP + +A L L
Sbjct: 234 NRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 30/300 (10%), Positives = 68/300 (22%), Gaps = 60/300 (20%)
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
+V F+ + A + F
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLE--------------------------------- 30
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
N + +N+ L + Y + + + I
Sbjct: 31 ---AKKYNSPYI-YNR---RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 300
+ L+I+ A+ + + +G ++ A + D
Sbjct: 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTTTDP 142
Query: 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 360
LG A K KA + +V+ + A +
Sbjct: 143 KVFYELGQ-----AYYYNKE--------YVKADSSFVKVLELKPNIYIGYLWRARANAAQ 189
Query: 361 GQ---FDVSKDLFTQVQEAASGSVFVQMPD---VWINLAHVYFAQGNFALAMKMYQNCLR 414
++K + ++ E + + +A+ Y + A ++N L
Sbjct: 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 63
E I + D A ++ +L + P N + + L
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
L ++ D+R A + E L+ P N IY L +KAQE R+A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 77 IDPRDAQAFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134
I P A+ + G L ++ F A L P N G+ ++G
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA---LADPTYPTPYIANLNKGICSAKQG 127
Query: 135 EFESAHQSFKDAL 147
+F A K +L
Sbjct: 128 QFGLAEAYLKRSL 140
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 1/97 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
G K G F A ++ L P K L + GQ+ A +K
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
+ LG I+ G A A++ L
Sbjct: 176 RVEVLQADDLLLG-WKIAKALGNAQAAYEYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 20/203 (9%)
Query: 226 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285
K + +LA + + + + +ALK + K A + ++ KA+
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345
E+FR A + + + G L ++ + + + T
Sbjct: 63 ESFRQAL-SIKPDSAEINNNYGW-----FLCGRLN-------RPAESMAYFDKALADPTY 109
Query: 346 NLYAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403
G+ A++GQF +++ + A Q P + LA G
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLG 164
Query: 404 LAMKMYQNCLRKFYYNTDAQILL 426
A ++ + +LL
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLL 187
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-09
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 9/134 (6%)
Query: 17 YYGLGQV-QLKLGDFRSALTNFEKVLE--IYPDNCETLKALGHIYVQLGQIEKAQELLRK 73
G +L ++ F+K L YP G + GQ A+ L++
Sbjct: 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138
Query: 74 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133
+ P+ AF +L + A KK V + +++ +
Sbjct: 139 SLAAQPQFPPAFKELARTKM------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192
Query: 134 GEFESAHQSFKDAL 147
+A +++
Sbjct: 193 KALGNAQAAYEYEA 206
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 33/248 (13%), Positives = 61/248 (24%), Gaps = 49/248 (19%)
Query: 42 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAA 100
E L Y++ +A + A K DP++ A++ E+ A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 101 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSK 159
++F+ A ++ + E+ NN G + + F AL D
Sbjct: 62 QESFRQALSIKPDSA-----EINNNYGWFLCGRLNRPAESMAYFDKALADPT-------- 108
Query: 160 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 219
Y A N + A
Sbjct: 109 ---YPTPYIA------------------------------NLNKGICSAKQGQFGLAEAY 135
Query: 220 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELKN 278
+ L + A+ LA L + + + L + +
Sbjct: 136 LKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195
Query: 279 DDWVKAKE 286
+ A E
Sbjct: 196 GNAQAAYE 203
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 4e-16
Identities = 47/456 (10%), Positives = 104/456 (22%), Gaps = 43/456 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ L + L + + PD + + L +++ +L +A
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHG 288
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+ P A G AL+ + +L +A P + + +
Sbjct: 289 LTPDQVVAIASHGGGK------QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALE 342
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM-LQFKDMQLFHRFENDGNHV-EL 192
+ A G L + A AS + ++ R L
Sbjct: 343 TVQRLLPVLCQAHG-------LTPDQ----VVAIASNGGGKQALETVQRLLPVLCQAHGL 391
Query: 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252
++V + + VL + D V A +A +Q +
Sbjct: 392 TPDQVVAIASNGGKQALETVQRLLPVLCQAHGLT-PDQVVAIASHDGGKQALETVQRLLP 450
Query: 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 312
++ + + A++ + + + A L +
Sbjct: 451 VLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQA------------HGL-TPDQV 497
Query: 313 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 372
A+ + K +++ + + + A G + Q
Sbjct: 498 VAIAS-NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556
Query: 373 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 432
+ A + + +
Sbjct: 557 AHGLTP-----DQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQVQVVAIASNIGGK 609
Query: 433 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
E Q L +A L P+ Q
Sbjct: 610 QALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 645
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 5e-16
Identities = 43/456 (9%), Positives = 100/456 (21%), Gaps = 39/456 (8%)
Query: 2 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 61
+ + + + L + L + + PD + + G L
Sbjct: 316 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375
Query: 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-- 119
+++ +L +A + P A G AL+ + +L +A P
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-------ALETVQRLLPVLCQAHGLTPDQ 428
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179
+ + + + G L ++ QL
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHG------LTPAQVVAIASHDGGKQALETVQQL 482
Query: 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 239
L ++V + + + + + D V A
Sbjct: 483 LPVLCQA---HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG 539
Query: 240 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 299
+A +Q + ++ +A + A++ G + + + A
Sbjct: 540 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTQVQ 598
Query: 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359
A S K +++ + + + + A
Sbjct: 599 VVAIASNIG-------------GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 645
Query: 360 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419
+ Q + A + +
Sbjct: 646 LETVQRLLPVLCQAHGLTP-----DQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQ 698
Query: 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
+ E Q L +A L P
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 2e-14
Identities = 46/454 (10%), Positives = 96/454 (21%), Gaps = 75/454 (16%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
G + R+ALT L + P + + L +++ +L +A
Sbjct: 163 KRGGVTAMEAVHASRNALTG--APLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHG 220
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+ P A AL+ + +L +A P + + +
Sbjct: 221 LTPAQVVAIASHDGGK------QALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALE 274
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
+ A + V
Sbjct: 275 TVQRLLPVLCQAH------------------------------------GLTPDQVVAIA 298
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
+ L + + A L D V A +A +Q + ++
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGL-------TPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314
+A + A++ G + + + A T + A
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-------------DQVVA 398
Query: 315 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 374
+ + LE +++ + + + A + Q
Sbjct: 399 IASNGGKQALET--VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH 456
Query: 375 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434
V + A + + +
Sbjct: 457 GLTPAQV-----VAIASHDGGKQALETVQQLLPVLCQAHGLTP--DQVVAIASNIGGKQA 509
Query: 435 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
Q L +A L P G Q
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 543
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 15/140 (10%), Positives = 38/140 (27%), Gaps = 8/140 (5%)
Query: 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 70
+ + G + L + L + + + + + L +++ +
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723
Query: 71 LRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGV 128
L +A + P A G AL+ + +L +A P + + +
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGK------QALETVQRLLPVLCQAHGLTPAQVVAIASNIG 777
Query: 129 IHFEKGEFESAHQSFKDALG 148
+ G
Sbjct: 778 GKQALETVQRLLPVLCQDHG 797
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 2e-15
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+
Sbjct: 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+P + LG L L F A K A P +V I + + G
Sbjct: 105 ANPINFNVRFRLGVAL------DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158
Query: 135 EFESAHQSFKDAL 147
E A FK A
Sbjct: 159 RHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 73.6 bits (182), Expect = 3e-15
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y G K G + A+ E+V + + + LG YV+ G +++ ELL ++
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
P + + LG + + A LL K E P V +GV G
Sbjct: 71 DAPDNVKVATVLGLTY------VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Query: 135 EFESAHQSFKDAL 147
F+ A SFK AL
Sbjct: 125 RFDEAIDSFKIAL 137
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 5e-09
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA +
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172
Query: 77 IDPRDAQA 84
+D +
Sbjct: 173 LDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 6e-04
Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 19/182 (10%)
Query: 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 292
Y ++ L+ + + + LG +K + E +
Sbjct: 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 293 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 352
A + LG ++ + A L +V + N
Sbjct: 70 -ADAPDNVKVATVLGL-----TYVQVQK--------YDLAVPLLIKVAEANPINFNVRFR 115
Query: 353 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412
GV L G+FD + D F V +A Y G A+ ++
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNE-----GKVHRAIAFSYEQMGRHEEALPHFKKA 170
Query: 413 LR 414
Sbjct: 171 NE 172
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 7e-04
Identities = 19/238 (7%), Positives = 50/238 (21%), Gaps = 81/238 (34%)
Query: 54 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
G + + G+ +A LL + D D
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVA---------------------------- 45
Query: 114 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173
++G+ + + G + + + +L
Sbjct: 46 ----------LHLGIAYVKTGAVDRGTELLERSL-------------------------- 69
Query: 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 233
+ ++V++ + + + + +
Sbjct: 70 ----------ADAPDNVKVATVLGLTYVQVQKYDLAVPL-------LIKVAEANPINFNV 112
Query: 234 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
RL +I+ AL + + + +A F+ A
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 3e-15
Identities = 50/305 (16%), Positives = 95/305 (31%), Gaps = 58/305 (19%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG Q + + ++A+ ++ LE+ P+N + L AL Y + A E L+ K
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161
Query: 77 IDPRDAQAFIDLGELLIS----SDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGV 128
+P+ + S + + + L +A G+ + ++ +GV
Sbjct: 162 QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221
Query: 129 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 188
+ GEF A +F AL
Sbjct: 222 LFHLSGEFNRAIDAFNAAL------------------------------------TVRPE 245
Query: 189 HVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247
L WN++ L N R E + Y L ++ + L
Sbjct: 246 DYSL-WNRLGATLANGDRSEEAVEA-------YTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 307
+ ++ AL + K N + + + W R A D + + +LG
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHP-AISGNIW----AALRIALSLMDQPELFQAANLG 352
Query: 308 NWNYF 312
+ +
Sbjct: 353 DLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 8e-14
Identities = 44/343 (12%), Positives = 93/343 (27%), Gaps = 44/343 (12%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
P + + G +LK GD + E + P + E + LG +
Sbjct: 56 FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE 115
Query: 65 EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEV 122
+ A L++ ++ P + +A + L + A LK ++ P +
Sbjct: 116 QAAIVALQRCLELQPNNLKALMALAVSYT------NTSHQQDACEALKNWIKQNPKYKYL 169
Query: 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 182
+ N + G V +
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVLEG---------------VKELYLEAAHQN------- 207
Query: 183 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 242
G+ ++ + L L + A + L + + RL A
Sbjct: 208 ----GDMID-----PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258
Query: 243 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-----SDATDG 297
+ + ++E AL++ + + LG + + +A F A
Sbjct: 259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ 318
Query: 298 KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340
+ + +S W + P+L ++ R
Sbjct: 319 QVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 32/355 (9%)
Query: 134 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVEL 192
EFE A + + W + + + + + ++ E H E
Sbjct: 3 MEFERAKAAVESDTE--FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252
P+ F + D + + + +A+ L N Q +I
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 312
+ L++ AL L A E + + K Y +
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKG---- 175
Query: 313 AALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEKGQFDVSKD 368
+ +R K LE KELY Q+ + G GV+ G+F+ + D
Sbjct: 176 -SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 369 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTDA 422
F +W L A++ Y L + YN
Sbjct: 235 AFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--- 286
Query: 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 477
L + +++ + L A+ L + + A+ + L+
Sbjct: 287 -----LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 51/420 (12%), Positives = 95/420 (22%), Gaps = 94/420 (22%)
Query: 27 LGDFRSALTNFEKVLEIYPD--------NCETLKALGHIYVQLGQIEKAQELLRKAAKID 78
+F A E E + + + +++ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 79 PRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 135
+D + G + D + + A + P E +G+ E
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFM-------EAAILQDPGDAEAWQFLGITQAENEN 114
Query: 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 195
++A + + L E N+++
Sbjct: 115 EQAAIVALQRCL------------------------------------ELQPNNLK---- 134
Query: 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255
L LA A + + + Y + S +
Sbjct: 135 ---ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 256 EALKVNGKYPNALSM------------LGDLELKNDDWVKAKETFRAASDATDGKDSYAT 303
V Y A LG L + ++ +A + F AA +D
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPEDYSLW 250
Query: 304 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 363
LG L N R E+A E YTR + + + G+ G +
Sbjct: 251 NRLGA-----TLANGDR--------SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 364 DVSKDLFTQV-------QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416
+ F + ++W L L L
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 12 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD 71
Query: 65 EKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTL----------LKK 113
A L A +DP+D L + + AAL + + +
Sbjct: 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 114 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
A ++ + + E+ AL
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 50/322 (15%), Positives = 98/322 (30%), Gaps = 19/322 (5%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
G T++ E G ++L + +A + P +A+
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 145
LG A + A L A P I V + V H + +A S +
Sbjct: 61 LGLTQ------AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114
Query: 146 ALG-----DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH-VELPWNKVTV 199
L + + L + ++ + F + + +E+ N +
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259
+L L ++ +A+ R + D + +L A N Q +++ N AL
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234
Query: 260 VNGKYPNALSMLGDLELKNDDWVKAKETFRAA-----SDATDGKDSYATLSLGNWNYFAA 314
+N Y + + + A + A T ++ + W++F
Sbjct: 235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294
Query: 315 LRNEKRAPKLEATHLEKAKELY 336
L N P L + E +
Sbjct: 295 LLNVMNRPDLVELTYAQNVEPF 316
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 74
++R T LE+ P++ + +LG +Y + A LR+A
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198
Query: 75 AKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHF 131
++ P DAQ + LG L + ALDA+ A + P + V+ N+ V +
Sbjct: 199 VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-------PGYVRVMYNMAVSYS 251
Query: 132 EKGEFESAHQSFKDAL 147
+++ A + A+
Sbjct: 252 NMSQYDLAAKQLVRAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 32/255 (12%), Positives = 64/255 (25%), Gaps = 36/255 (14%)
Query: 229 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288
Y + + NL + + + A LG + +N+ A
Sbjct: 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78
Query: 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA-THLEKAKEL--------YTRV 339
A D KD +L + NE A A L +
Sbjct: 79 NHARML-DPKDIAVHAALAV-----SHTNEHNAN--AALASLRAWLLSQPQYEQLGSVNL 130
Query: 340 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 399
+ A ++ + L E + +L +Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND-----AQLHASLGVLYNLS 185
Query: 400 GNFALAMKMYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453
N+ A + + + + L T + Q+ + RA+ + P
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNK--------LGATLANGNRPQEALDAYNRALDINP 237
Query: 454 SNYTLRFDAGVAMQK 468
+ ++ V+
Sbjct: 238 GYVRVMYNMAVSYSN 252
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG + AL + + L+I P + + Y + Q + A + L +A
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
+ + T + D F+ ++ +
Sbjct: 269 MQVGGTTPTGEASREA----TRSMWDFFRMLLNVMNR 301
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 13/144 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG Q + A++ + LE+ PDN L AL + +A E+LR +
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDA---------FKTARTLLKKA----GEEVPIEVL 123
P A E + G + F + L A + +V
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220
Query: 124 NNIGVIHFEKGEFESAHQSFKDAL 147
+GV+ GE++ A F AL
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAAL 244
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 52/346 (15%), Positives = 97/346 (28%), Gaps = 75/346 (21%)
Query: 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 65
E P + G +L+ GD +A+ FE ++ P + E + LG + Q
Sbjct: 56 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115
Query: 66 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125
A LR+ ++ P + A L
Sbjct: 116 LAISALRRCLELKPDNQTA--------------------------------------LMA 137
Query: 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185
+ V + A + +D L Y + + L
Sbjct: 138 LAVSFTNESLQRQACEILRDWL-------RYTPA---YAHLVTPAEEGAGGAGLGPSKRI 187
Query: 186 DGNHVELP-WNKVTVLFNLARLLEQIHDTVAASVLYRL-ILFKYQ--------------- 228
G+ + + +V LF A + ++ V L +LF
Sbjct: 188 LGSLLSDSLFLEVKELFLAA--VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 229 ---DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285
+ + +L A N + ++ AL++ Y + LG + +A
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305
Query: 286 ETFRAA----SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEA 326
E F A + + +S W+ AL ++ A
Sbjct: 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 42/294 (14%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 184 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243
EN P+ + L A +L+ + + +++A+ L
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 302
L+I + L++ AL L +A E R
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 303 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEK 360
G L + + KEL+ + +++ G GV+
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 361 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------ 414
G++D + D FT +W L A+ Y+ L
Sbjct: 231 GEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 415 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
+ YN L + ++ + L A+++ + R + G +
Sbjct: 286 RSRYN--------LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 12/148 (8%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC--ETLKALGHIYVQLG 62
E + P + L F F + + P + + LG ++ G
Sbjct: 172 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231
Query: 63 QIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVP-- 119
+ +KA + A + P D + LG L + + A+ A++ A L+ P
Sbjct: 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA-LELQ------PGY 284
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
I N+G+ G A + F +AL
Sbjct: 285 IRSRYNLGISCINLGAHREAVEHFLEAL 312
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
GLG + G++ A+ F L + P++ LG Q E+A R+A +
Sbjct: 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279
Query: 77 IDPRDAQAFIDLGELLISSDTGA---ALDAFKTARTLLKKAGE------EVPIEVLNNIG 127
+ P ++ +LG I + GA A++ F A + +K+ + + + +
Sbjct: 280 LQPGYIRSRYNLGISCI--NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337
Query: 128 VIHFEKGEFESAHQSFKDAL 147
+ G+ ++ + L
Sbjct: 338 LALSMLGQSDAYGAADARDL 357
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 6e-15
Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
L ++ + G+ A+ + K LE++P+ L + Q G++++A ++A +
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
I P A A+ ++G L + + A +A + P + +N+ IH + G
Sbjct: 72 ISPTFADAYSNMGNTL------KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 135 EFESAHQSFKDAL 147
A S++ AL
Sbjct: 126 NIPEAIASYRTAL 138
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 4e-12
Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 8/138 (5%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
EF + L V + G + AL ++++ + I P + +G+ ++ ++ A +
Sbjct: 41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 100
Query: 72 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVI 129
+A +I+P A A +L + A + A + P + N+
Sbjct: 101 TRAIQINPAFADAHSNLASIH------KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 130 HFEKGEFESAHQSFKDAL 147
++ + K +
Sbjct: 155 LQIVCDWTDYDERMKKLV 172
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 1e-11
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 51/232 (21%)
Query: 45 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 104
P + ++L L +I + G IE+A L RKA ++ P A A +L +L
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL------QQQGKL 59
Query: 105 KTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162
+ A K+A P + +N+G E + + A Q + A+
Sbjct: 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI--------------- 104
Query: 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 222
+ + + NLA + + + A YR
Sbjct: 105 ---------------------QINPAFADA-------HSNLASIHKDSGNIPEAIASYRT 136
Query: 223 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274
L D+ DAY LA + + E + + + + +
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-11
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 7/136 (5%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
F Y +G ++ D + AL + + ++I P + L I+ G I +A
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 72 RKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 130
R A K+ P A+ +L L D + K +++ E+ N + +H
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK------NRLPSVH 188
Query: 131 FEKGEFESAHQSFKDA 146
F+ A
Sbjct: 189 PHHSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 3e-08
Identities = 60/454 (13%), Positives = 126/454 (27%), Gaps = 82/454 (18%)
Query: 229 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288
+ D+ LA I + + N++ ++ L +AL+V ++ A S L
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--------------- 51
Query: 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348
L+ + + L++A Y I +
Sbjct: 52 -------------------------VLQQQGK--------LQEALMHYKEAIRISPTFAD 78
Query: 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408
A + G L E + +T+ + D NLA ++ GN A+
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINP-----AFADAHSNLASIHKDSGNIPEAIAS 133
Query: 409 YQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467
Y+ L+ D LA W D + + + + + V
Sbjct: 134 YRTALK---LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH 190
Query: 468 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 527
L R A R + ++ + K++ ++
Sbjct: 191 HSMLYPLSHGFRKAIAER-------HGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 528 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 587
H + + + E Y L + + ++
Sbjct: 244 SSDFGNHPTSHLMQS--------------IPGMHNPDKFEVFCYALSPDDGTNFRVKVMA 289
Query: 588 QEEHFQRVKEQWRSSTPASKRRERSENDD-DEVGHSEKRRRKGGKRRKKDKSSRSHYETE 646
+ HF + + + A + + + + G+++ R + R +
Sbjct: 290 EANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPG 349
Query: 647 YAEADMMDYR---EEPEDEDASMNYREPIGQMND 677
+ A MDY +E + + Y E + M
Sbjct: 350 TSGALFMDYIITDQETSPAEVAEQYSEKLAYMPH 383
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 259 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 318
+++ + +A S +G+ + D A + + A + + A +L + ++
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLAS-----IHKDS 124
Query: 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 373
+ +A Y + A L + + ++
Sbjct: 125 GN--------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 51/216 (23%)
Query: 78 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 135
P A + +L + + A L +KA E P +N+ + ++G+
Sbjct: 5 CPTHADSLNNLANIK------REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 58
Query: 136 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 195
+ A +K+A+ +
Sbjct: 59 LQEALMHYKEAI------------------------------------RISPTFAD---- 78
Query: 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255
N+ L+++ D A Y + + DA+ LA+I K N+ +I
Sbjct: 79 ---AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135
Query: 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
ALK+ +P+A L DW E +
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 14/92 (15%), Positives = 28/92 (30%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ L + G+ A+ ++ L++ PD + L H + E ++K
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTAR 108
I + S F+ A
Sbjct: 174 IVADQLEKNRLPSVHPHHSMLYPLSHGFRKAI 205
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 54/239 (22%)
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
+ LNN+ I E+G E A + ++ AL
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--------------------------------- 36
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
E+ NLA +L+Q A + Y+ + + DAY +
Sbjct: 37 ----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 241 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKD 299
K ++Q +++ A+++N + +A S L + + + +A ++R A D D
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 300 SYATLS-----LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 353
+Y L+ + +W + KL + ++ ++ + H S LY +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMK-----KLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
YYG G V + ++ A FEK L +N + LG + V+L Q + A L++A +
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
++ D +A G L A A + E+ P + N GV + K
Sbjct: 154 LNENDTEARFQFGMCL------ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207
Query: 135 EFESAHQSFKDAL 147
E A + A+
Sbjct: 208 NREKALEMLDKAI 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 35/258 (13%), Positives = 83/258 (32%), Gaps = 51/258 (19%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ GD+ A F K +E ++ ++ + ++E+A KA +
Sbjct: 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE 85
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+D A A+ G + + +K A+ + +KA ++ +G + +
Sbjct: 86 LDSSAATAYYGAGNVY------VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE 139
Query: 135 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 194
+ + A + A+ E + N E +
Sbjct: 140 QPKLALPYLQRAV------------------------------------ELNENDTEARF 163
Query: 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254
L N L E + + + + + DA+ + N + ++E++
Sbjct: 164 QFGMCLANEGMLDEALSQ-------FAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216
Query: 255 NEALKVNGKYPNALSMLG 272
++A+ + + AL
Sbjct: 217 DKAIDIQPDHMLALHAKK 234
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 4e-10
Identities = 21/76 (27%), Positives = 26/76 (34%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ G G AL+ F V E P + + G Y EKA E+L KA
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221
Query: 77 IDPRDAQAFIDLGELL 92
I P A L
Sbjct: 222 IQPDHMLALHAKKLLG 237
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 55/266 (20%)
Query: 32 SALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
S+ + + P T + G EKA E KA + + DA +I+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 145
LL ++++ + A KA E G ++ K ++ A F+
Sbjct: 63 FANLL------SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 146 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205
AL + +L + TVL L +
Sbjct: 117 AL------------------------------------RAGMENGDLFYMLGTVLVKLEQ 140
Query: 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 265
+ + + ++ +A + L ++ + + +
Sbjct: 141 PKLALPY-------LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193
Query: 266 NALSMLGDLELKNDDWVKAKETFRAA 291
+A G ++ KA E A
Sbjct: 194 DAFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 39/335 (11%), Positives = 74/335 (22%), Gaps = 98/335 (29%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
+ + + + G EKA E KA + + DA +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY-- 60
Query: 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
N + E E A + AL
Sbjct: 61 ------------------------------------INFANLLSSVNELERALAFYDKAL 84
Query: 148 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 207
E D + + V
Sbjct: 85 ------------------------------------ELDSSAATAYYGAGNVYVVKEMYK 108
Query: 208 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 267
E + L + D + L + +L++ + A+++N A
Sbjct: 109 EAKDM-------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Query: 268 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327
G +A F A + D + A + G ++
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVT-EQDPGHADAFYNAGV-----TYAYKEN------- 208
Query: 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 362
EKA E+ + I ++ A + ++
Sbjct: 209 -REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 22/227 (9%)
Query: 188 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247
+ A + + + ++ Y+ A + + N L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 307
+ ++ ++AL+++ A G++ + + + +AK+ F A ++ LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMENGDLFYMLG 132
Query: 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367
L ++ + A R + + ++ A G+ LA +G D +
Sbjct: 133 T-----VLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 368 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414
F V E G D + N Y + N A++M +
Sbjct: 180 SQFAAVTEQDPGH-----ADAFYNAGVTYAYKENREKALEMLDKAID 221
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367
EKA E +T+ I ++ + +L+ + + +
Sbjct: 22 ASMTGGQQMGRGSEFG----DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77
Query: 368 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTD 421
+ + E S + +VY + + A M++ LR +Y
Sbjct: 78 AFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-- 130
Query: 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
L + EQ + L RA+ L ++ RF G+ +
Sbjct: 131 ------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
LG LG + +ALT FE+ L+ P + E L L ++LG + A E +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 77 IDPRDAQAFIDLGELL-----ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVI 129
PR ++ L E + D + A ++LK A P + G++
Sbjct: 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127
Query: 130 HFEKGEFESAHQSFKDAL 147
+ GE + A S K AL
Sbjct: 128 YALLGERDKAEASLKQAL 145
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 9/133 (6%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y + G AL+ + + P G +Y LG+ +KA+ L++A
Sbjct: 87 YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
++ + L EL ++ A KA E+ P +++ KG
Sbjct: 147 LED-TPEIRSALAELY------LSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199
Query: 135 EFESAHQSFKDAL 147
+ E A ++
Sbjct: 200 KAEEAARAAALEH 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 23/232 (9%)
Query: 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287
Q LRL A ++ L ALK N + P AL L +LK A E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347
+ A + + L + AL + + +LE+A + +
Sbjct: 62 GKTLV-ARTPRYLGGYMVLS--EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 407
G+V A G+ D ++ Q P++ LA +Y + G A+
Sbjct: 119 PLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLSMGRLDEALA 172
Query: 408 MYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453
Y L A + ++ ++ H
Sbjct: 173 QYAKALEQAPKDLDLRVR--------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
L ++ L +G AL + K LE P + + + G+ E+A
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213
Query: 77 IDP 79
Sbjct: 214 HHH 216
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 69.3 bits (171), Expect = 3e-14
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
+DPR A+A+ +LG + A +KA E P E N+G ++++G
Sbjct: 64 LDPRSAEAWYNLGNAY------YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 135 EFESAHQSFKDAL 147
+++ A + ++ AL
Sbjct: 118 DYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 2e-07
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Query: 77 IDP 79
+DP
Sbjct: 132 LDP 134
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 8/122 (6%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
D L + P + L + +G + +++ + P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 145
LG + A LL++A + P + +G + G+ E+A ++
Sbjct: 63 LGRV------RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116
Query: 146 AL 147
A
Sbjct: 117 AH 118
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ L +L +GD + ++ L ++P + E + LG + + +A LL++A+
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 77 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL 110
P + LG L + AA A+ A L
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 15/76 (19%), Positives = 26/76 (34%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
LG+V+ A ++ + P++ LGH GQ E A +A +
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 77 IDPRDAQAFIDLGELL 92
+ P + L
Sbjct: 120 LLPEEPYITAQLLNWR 135
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 16/93 (17%), Positives = 30/93 (32%)
Query: 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258
LA + DT A + + L + + +A RL + + + L+ +A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 259 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
++P LG A + A
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 16/201 (7%)
Query: 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445
W+ LA G+ Q L + + + L R + ++ + L
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 446 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 505
+A AP + + G A L+ + A A ++ +
Sbjct: 81 QQASDAAPEHPGIALWLGHA--------LEDAGQAEA----AAAAYTRAHQLLPEEPYIT 128
Query: 506 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 565
L+ ++ + AA A + AA Q A A +
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAI 188
Query: 566 EEQKKYLLEKRKLEDEQKRLR 586
+ L R + LR
Sbjct: 189 AASVRPLAPTRV--RSKGPLR 207
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 19/171 (11%)
Query: 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339
D + RAA +D A L L + A + R
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWLMLAD-----AELGMGD--------TTAGEMAVQRG 49
Query: 340 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 399
+ H + A G V + + + L Q +AA P + + L H
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----PGIALWLGHALEDA 104
Query: 400 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450
G A Y + L R + D + +RA
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271
D + R + A+L LA + V L ++ +P A++ L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331
G + +A + ASDA + L LG+ AL + + E
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGH-----ALEDAGQ--------AEA 109
Query: 332 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378
A YTR Y + L QV+ A +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 23/233 (9%), Positives = 46/233 (19%), Gaps = 81/233 (34%)
Query: 62 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE 121
+ LR A + P+D A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVA------------------------------------- 25
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 181
+ G+ + + + L
Sbjct: 26 -WLMLADAELGMGDTTAGEMAVQRGL---------------------------------- 50
Query: 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241
H E + L R+ A+VL + ++ L L
Sbjct: 51 --ALHPGHPE-------AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101
Query: 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294
+ + + A ++ + P + L + + DW A
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 10/73 (13%), Positives = 20/73 (27%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
E LG G +A + + ++ P+ L + +L L
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148
Query: 72 RKAAKIDPRDAQA 84
+ + A
Sbjct: 149 AQVRAAVAQGVGA 161
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 14/145 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
LG LGDF++A+ + ++ L I LG+ ++ LGQ E A E
Sbjct: 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285
Query: 71 LRKAAKI------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EV 122
++ + +AQ+ LG + A++ + ++ G+ +
Sbjct: 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345
Query: 123 LNNIGVIHFEKGEFESAHQSFKDAL 147
++G H G E A + + L
Sbjct: 346 CWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 7e-13
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 12/155 (7%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQ 60
+ G+ GD R+ + F+ ++ ++ LG+ Y
Sbjct: 39 SGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY 98
Query: 61 LGQIEKAQELLRKAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKK 113
LG KA + + + D A++ +LG L A + TL ++
Sbjct: 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158
Query: 114 AGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
G+ + L N+G ++ KG+ K
Sbjct: 159 LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 31/162 (19%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
Y LG LGD+ A+ + L + ++ LG+ +G+ ++A
Sbjct: 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC 148
Query: 71 LRKAAKI-----DPRD--------AQAFIDLGELLISSDTGA-----------ALDAFKT 106
+ + D + G+ L + G A++ ++
Sbjct: 149 CERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Query: 107 ARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
L++ G+ N+G ++ G+F++A + ++ L
Sbjct: 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 56/422 (13%), Positives = 108/422 (25%), Gaps = 91/422 (21%)
Query: 19 GLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLR 72
L LG + + + C L G G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 73 KAAKIDPRD----AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNI 126
A + D + + LG D A+ K TL K + + + N+
Sbjct: 73 AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132
Query: 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 186
G G F+ A + L + L
Sbjct: 133 GNTLKVMGRFDEAAICCERHL--TLARQL------------------------------- 159
Query: 187 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246
G+ + + L+NL + + + + +A
Sbjct: 160 GDRLS----EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL----------TRAVEF 205
Query: 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYAT 303
Q +++L L G A LG+ D+ A E + + + +
Sbjct: 206 YQENLKL-MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264
Query: 304 LSLGNW-NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 362
+ N N L + A A H ++ L + + + G +
Sbjct: 265 -ANSNLGNSHIFLGQFEDA----AEHYKRTLALA-VELGEREVEAQSCYSLGNTYTLLHE 318
Query: 363 FDVSKDLFTQ-----------VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 411
F+ + + + + EA + +L + + A G A+K +
Sbjct: 319 FNTAIEYHNRHLAIAQELGDRIGEARA----------CWSLGNAHSAIGGHERALKYAEQ 368
Query: 412 CL 413
L
Sbjct: 369 HL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 31/162 (19%)
Query: 17 YYGLGQVQLKLGD-----------------FRSALTNFEKVLEIY------PDNCETLKA 53
Y LG V G A+ +++ L++
Sbjct: 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228
Query: 54 LGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLISS-DTGAALDAFKT 106
LG+ Y LG + A E ++ +I + +A +LG I A + +K
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288
Query: 107 ARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
L + GE + ++G + EF +A + L
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
Y LG L +F +A+ + L I +LG+ + +G E+A +
Sbjct: 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365
Query: 71 LRKAAKI 77
+ ++
Sbjct: 366 AEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 60/439 (13%), Positives = 124/439 (28%), Gaps = 111/439 (25%)
Query: 50 TLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLISS-DTGAALD 102
+ A + LG ++ GE L ++ D A +
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 103 AFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160
F+ A ++ E++ + + +G +F G++ A Q K L
Sbjct: 70 FFQAA---IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL------------- 113
Query: 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 220
+ ++ + + NL L+ + A++
Sbjct: 114 ---------------TL-----AKSMNDRLGE----AKSSGNLGNTLKVMGRFDEAAICC 149
Query: 221 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 280
L + D + +A NL GK+ + + +
Sbjct: 150 ERHLTLARQLGDRL----SEGRALYNLGN-------VYHAKGKHLGQRNPGKFGDDVKEA 198
Query: 281 WVKAKETFRAA---SDATDGKDSYATLSLGN----W----NYFAALRNEKRAPKLEATHL 329
+A E ++ + + + GN + ++ AA+ + + L
Sbjct: 199 LTRAVEFYQENLKLMRDLGDRGAQGR-ACGNLGNTYYLLGDFQAAIEHHQER-------L 250
Query: 330 EKAKELYTRVIVQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQ-----------VQEAA 377
A+E R + SNL G GQF+ + + + + EA
Sbjct: 251 RIAREFGDRAAERRANSNL------GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304
Query: 378 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTD-AQILLYLARTHY 433
S +L + Y F A++ + L ++ A+ L H
Sbjct: 305 S----------CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS 354
Query: 434 EAEQWQDCKKSLLRAIHLA 452
+ K + + LA
Sbjct: 355 AIGGHERALKYAEQHLQLA 373
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 55/269 (20%)
Query: 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 65
E++K + + + G++ +A++ +E + K + + ++G
Sbjct: 33 ELHKDITY---LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89
Query: 66 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVL 123
L+K + + ++L L + + P E
Sbjct: 90 HKLGDLKKTIEYYQKSLTEH-RTADIL------TKLRNAEKELKKAEAEAYVNPEKAEEA 142
Query: 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 183
G +F K ++ +A +++ + +
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMI------------------------------------ 166
Query: 184 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243
+ N+ L L E I D + K ++V AY+R A A
Sbjct: 167 KRAPEDARGYSNRAAALAKLMSFPEAIAD-------CNKAIEKDPNFVRAYIRKATAQIA 219
Query: 244 RNNLQLSIELVNEALKVNGKYPNALSMLG 272
++E ++ A + + N S
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 23/247 (9%), Positives = 59/247 (23%), Gaps = 34/247 (13%)
Query: 232 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
AA + + +I +N+A++ + ++ + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 292 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351
+ + L + EK + + A
Sbjct: 99 IEYYQKSLTE-------HRTADILTKLRN--------AEKELKKAEAEAYVNPEKAEEAR 143
Query: 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 411
G K + + +T++ + A + N A +F A+
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 412 CLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465
+ + Y A +++ ++L A +
Sbjct: 199 AIEKDPNFVRAYIR--------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 466 MQKFSAS 472
+ AS
Sbjct: 251 QLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 34/323 (10%), Positives = 81/323 (25%), Gaps = 76/323 (23%)
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 180
+ G ++ +F+ A + + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW--------------------------------- 32
Query: 181 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 240
E + L N+ + I + + ++ Y ++
Sbjct: 33 ---ELHKDITYL-NNRAAAEYEKGEYETAIST-------LNDAVEQGREMRADYKVISKS 81
Query: 241 AKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDA 294
N + + + ++ K + L+ L + E K + A +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE-------KELKKAEAEA-Y 133
Query: 295 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354
+ + + G + A + YT +I + + +
Sbjct: 134 VNPEKAEEARLEGK-----EYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 355 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414
LA+ F + + E +I A A +A A++
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 415 KFYYNTDAQILLYLARTHYEAEQ 437
K + + + +Y+A Q
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 27/249 (10%), Positives = 59/249 (23%), Gaps = 53/249 (21%)
Query: 45 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 104
+ KA G+ + + Q ++A E KA ++ D + +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAE------YEKGEY 54
Query: 105 KTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162
+TA + L A E+ I G K + K+ T
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTI-------EYYQKSLT 107
Query: 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 222
+L L +++
Sbjct: 108 E------------------------------HRTADILTKLRNAEKELKK-------AEA 130
Query: 223 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 282
+ + + +++ +++ E +K + S K +
Sbjct: 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP 190
Query: 283 KAKETFRAA 291
+A A
Sbjct: 191 EAIADCNKA 199
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-13
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 6/121 (4%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87
G S + EI D E L +L Q G E A + + +D D++ F+
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 88 LGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146
LG + A+ ++ + + + + GE A A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVM-----DIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 147 L 147
Sbjct: 116 Q 116
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 2e-11
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y L Q + G + A F+ + + + LG +GQ + A A
Sbjct: 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83
Query: 77 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTL 110
+D + + E L+ + A A+ L
Sbjct: 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 9e-07
Identities = 10/68 (14%), Positives = 26/68 (38%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ GLG + +G + A+ ++ + +Q G++ +A+ L A +
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
Query: 77 IDPRDAQA 84
+ +
Sbjct: 118 LIANXPEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 388
L + + L + G ++ + +F +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRF 57
Query: 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448
++ L A G + LA+ Y + + + A + + + + L A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 449 IHLAPS 454
L +
Sbjct: 116 QELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443
+ +LA + G + A ++Q +Y++ L L Q+
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--FLGLGACRQAMGQYDLAIH 76
Query: 444 SLLRAIHLAPSNYTLRFDAGVA 465
S + F A
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAEC 98
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG + G+F +A F+ VLE+ P G G+ + AQ+ L +
Sbjct: 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 134
DP D + L D A + K +K+ +E V +G I E+
Sbjct: 140 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH---FEKSDKEQWGWNIVEFYLGNIS-EQT 195
Query: 135 EFESAHQSFKDAL 147
E D
Sbjct: 196 LMERLKADATDNT 208
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 43/277 (15%), Positives = 66/277 (23%), Gaps = 74/277 (26%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y G + LG A +F + L I PD E LG Q G + A E +
Sbjct: 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136
+DP A N G+ + G
Sbjct: 106 LDPTYNYAH--------------------------------------LNRGIALYYGGRD 127
Query: 137 ESAHQSFKDAL-----------GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185
+ A + LD K + + D
Sbjct: 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQA---KEVLKQHFEKSD--------- 175
Query: 186 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 245
+ W V F L + EQ + + + L +
Sbjct: 176 -----KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLG 229
Query: 246 NLQLSIELVNEALKVNGKYP-------NALSMLGDLE 275
+L + L A+ N LS+LG +
Sbjct: 230 DLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 48/326 (14%), Positives = 87/326 (26%), Gaps = 69/326 (21%)
Query: 44 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 103
+ + L Q + + +++L A D AQ + G L +L
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLY------DSLGL 58
Query: 104 FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161
AR +A P EV N +G+ + G F++A+++F L
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-------------- 104
Query: 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221
E D + N+ L+ R D
Sbjct: 105 ----------------------ELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LL 135
Query: 222 LILFKYQDYVDAYLRLAAIAKARNNLQLSIEL---VNEALKVNGKYPNALSMLGDLELKN 278
+ L L + + Q L ++ K + LG++ +
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQ 194
Query: 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338
+ K + S LG + L+ A L+
Sbjct: 195 TLMERLKADATDN-TSLAEHLSETNFYLGK-----YYLSLGD--------LDSATALFKL 240
Query: 339 VIVQHTSNLYAANGAGVVLAEKGQFD 364
+ + N A + L+ GQ
Sbjct: 241 AVANNVHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 28/270 (10%), Positives = 71/270 (26%), Gaps = 22/270 (8%)
Query: 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258
L + + + + + + L+ ++AL
Sbjct: 14 PLQPTLQQEVILAR---MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 259 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 318
+ P + LG + ++ A E F + D +YA L+ G AL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGI-----ALYYG 124
Query: 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378
R + A++ ++ + + + + + + L +++
Sbjct: 125 GR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 175
Query: 379 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 438
V L ++ Q + + ++ YL + +
Sbjct: 176 -KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDL 231
Query: 439 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
A+ N+ A + +
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSL 261
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 14/145 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
+ LG LG+FR A+ E+ L I LG+ Y+ LG+ E A E
Sbjct: 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245
Query: 71 LRKAAKID------PRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EV 122
+K + +AQ+ LG D A+D + ++ + +
Sbjct: 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305
Query: 123 LNNIGVIHFEKGEFESAHQSFKDAL 147
++G + G + A + L
Sbjct: 306 CWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 72
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 73 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 124
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127
Query: 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 157
N+G ++ KG+ L
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 34/165 (20%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
Y LG L D+ AL L + + LG+ LG ++A
Sbjct: 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 105
Query: 71 LRKAAKI-----DPRD--------AQAFIDLGELLISSDTGA--------------ALDA 103
++ I D + G+ A+D
Sbjct: 106 CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165
Query: 104 FKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
++ +L+ G+ N+G H+ G F A + + L
Sbjct: 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 14/153 (9%)
Query: 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLG 62
K P + ++A+ +E+ L + LG+ + LG
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197
Query: 63 QIEKAQELLRKAAKI-----DPRD-AQAFIDLGELLISS-DTGAALDAFKTARTLLKKAG 115
A + I D +A+ +LG I + A + +K L ++
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257
Query: 116 EEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
+ + ++G + ++E A L
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 56/393 (14%), Positives = 101/393 (25%), Gaps = 94/393 (23%)
Query: 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELLIS-SDTGAALD 102
C L G + G A ++ D + + LG D AL+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 103 AFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161
TL + G+++ + N+G G F+ A + L
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-------------- 110
Query: 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221
D+ + V L+NL +
Sbjct: 111 --------------DI-----SRELNDKVGE----ARALYNLGNVYHA------------ 135
Query: 222 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLE 275
K RN LQ +++L E L + + A LG+
Sbjct: 136 --KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTH 193
Query: 276 LKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNW-NYFAALRNEKRAPKLEATHLEK 331
++ A + K + + N N + L + A + + +K
Sbjct: 194 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERR-AYSNLGNAYIFLGEFETA----SEYYKK 248
Query: 332 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ-----------VQEAASGS 380
L R + + G ++ + D + + E +
Sbjct: 249 TLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA-- 305
Query: 381 VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
+L + Y A GN AM + L
Sbjct: 306 --------CWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
Y LG L D+ A+ K L I +LG+ Y LG ++A
Sbjct: 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325
Query: 71 LRKAAKI 77
K +I
Sbjct: 326 AEKHLEI 332
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 15/143 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ G + D++ AL F + + +G +Y L + +A++ ++
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65
Query: 77 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLK-----------KAGEEVPIEVLN 124
D A A+ G L A+ K A L+ + EVL
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 125
Query: 125 NIGVIHFEKGEFESAHQSFKDAL 147
NI ++ +K E++ A + A
Sbjct: 126 NIAFMYAKKEEWKKAEEQLALAT 148
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----------------CETLKALGHIYVQ 60
Y+ G + + + A+ + ++ L N CE L + +Y +
Sbjct: 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFID 87
+ +KA+E L A + + ID
Sbjct: 134 KEEWKKAEEQLALATSMKSEPRHSKID 160
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 74
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A + +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 75 AKIDPR--DAQAFIDLGELL 92
++ + +L +
Sbjct: 68 IEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 45 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDA 103
P++ T AL +++ +A L + + DP + LG+L T A+D
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 104 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 141
+ + ++ G + L+ + + E H
Sbjct: 64 YAQGIEVAREEGT---QKDLSELQDAKLKAEGLEHHHH 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y LG Q + G + A F+ + + + LG LG E+A + A
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 77 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL 110
+D + + E + D A F +AR L
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-11
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 36 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 94
+ + D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
AL ++ + + H + G+ + A F A
Sbjct: 66 GLYEQALQSYSYGALMDINE-----PRFPFHAAECHLQLGDLDGAESGFYSAR 113
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 12/67 (17%), Positives = 25/67 (37%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ GLG + LG + AL ++ + + ++QLG ++ A+ A
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
Query: 77 IDPRDAQ 83
+
Sbjct: 115 LAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405
L G + G++D ++ +F + ++ L + G + A
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQA 71
Query: 406 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
++ Y + + + A H + + A LA +
Sbjct: 72 LQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 387
+ A++++ + + + G G G ++ + ++ P
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-----PR 87
Query: 388 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435
+ A + G+ A + + + L A EA
Sbjct: 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443
+ L + G + A K++Q +Y+ L L ++ +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQ 73
Query: 444 SLLRAIHLAPSNYTLRFDAGVAMQK 468
S + + F A +
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQ 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/120 (13%), Positives = 40/120 (33%)
Query: 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 259
L+ L Q A +++ + +L L A ++ + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 260 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 319
++ P + L+ D A+ F +A + ++ L+ A+ K
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 7/58 (12%), Positives = 15/58 (25%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 69
+ + L+LGD A + F + L + ++
Sbjct: 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKD 141
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 14/145 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
+ LG LG+FR A+ E+ L I LG+ Y+ LG+ E A E
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249
Query: 71 LRKAAKID------PRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPI-EV 122
+K + +AQ+ LG D A+D + ++ + +
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309
Query: 123 LNNIGVIHFEKGEFESAHQSFKDAL 147
++G + G + A + L
Sbjct: 310 CWSLGNAYTALGNHDQAMHFAEKHL 334
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 72
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 73 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 124
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 157
N+G ++ KG+ L
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 34/165 (20%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
Y LG L D+ AL L + + LG+ LG ++A
Sbjct: 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 109
Query: 71 LRKAAKI-----DPRD--------AQAFIDLGELLISSDTGA--------------ALDA 103
++ I D + G+ A+D
Sbjct: 110 CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169
Query: 104 FKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
++ +L+ G+ N+G H+ G F A + + L
Sbjct: 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
Y LG + LG+F +A ++K L + ++ +LG+ Y L EKA +
Sbjct: 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289
Query: 71 LRKAAKID------PRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI--- 120
K I + +A LG + + A+ + + ++ G++
Sbjct: 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349
Query: 121 -----EVLNNIGVIHFEKGEFESAHQSFKDALGD 149
++ +G+ + S + +L
Sbjct: 350 RLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 14/153 (9%)
Query: 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLG 62
K P + ++A+ +E+ L + LG+ + LG
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201
Query: 63 QIEKAQELLRKAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAG 115
A + I D +A+ +LG I + A + +K L ++
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261
Query: 116 EEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
+ + ++G + ++E A L
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 45 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELLIS-SDTGA 99
+C L G + G A ++ D + + LG D
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 100 ALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
AL+ TL + G+++ + N+G G F+ A + L
Sbjct: 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 7e-12
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 14/145 (9%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
+ LG LG+FR A+ E+ L I LG+ Y+ LG+ E A E
Sbjct: 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY 71
Query: 71 LRKAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EV 122
+K + D AQ+ LG D A+D + ++ + +
Sbjct: 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131
Query: 123 LNNIGVIHFEKGEFESAHQSFKDAL 147
++G + G + A + L
Sbjct: 132 CWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-07
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
Y LG L D+ A+ K L I +LG+ Y LG ++A
Sbjct: 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151
Query: 71 LRKAAKI 77
K +I
Sbjct: 152 AEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 8/106 (7%)
Query: 50 TLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALD 102
LG+ + LG A + I D A+ +LG I + A +
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASE 70
Query: 103 AFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
+K L ++ + + ++G + ++E A L
Sbjct: 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 7e-12
Identities = 48/315 (15%), Positives = 91/315 (28%), Gaps = 42/315 (13%)
Query: 28 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKIDPRDAQAFI 86
+ L E+VL + L G +A+ LL KA K++P +A+
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 87 DLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 145
LGE+ D +A F A T K L N+ ++ + S
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNK------VSLQNLSMVLRQLQTDSGDEHSRH- 194
Query: 146 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-----VTVL 200
S+ Q K + D W +++
Sbjct: 195 ---------------------VMDSVRQAK-----LAVQMDVLDGR-SWYILGNAYLSLY 227
Query: 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 260
FN + + ++A + K D +L A + K + ++E ++A +
Sbjct: 228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287
Query: 261 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 320
+ +P L E+ + +L + R +
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAHLGPCGDGRYQSA 346
Query: 321 APKLEATHLEKAKEL 335
+ + L+ L
Sbjct: 347 SGQKMTLELKPLSTL 361
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 17/147 (11%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKA 67
+ LG+V K GD SA T F L + +L+ L + QL + +
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 68 QELLRKAAKIDPRDAQAFIDLGELLIS--SDTGAALDAFKTARTLLKKAGEEVPI----- 120
+ A ++D D +++ LG +S +TG + A + +A +
Sbjct: 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258
Query: 121 EVLNNIGVIHFEKGEFESAHQSFKDAL 147
++ N +H + + A + F A
Sbjct: 259 DLHLNRATLHKYEESYGEALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 17 YYGLGQVQLKLGDF-RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 75
G+ D+ A K +++ P+ E LG +Y + G + A A
Sbjct: 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164
Query: 76 KIDPRDAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIH 130
+ + +L +L + + K A + +G +
Sbjct: 165 THCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY 223
Query: 131 FEK--------GEFESAHQSFKDAL 147
+ A ++ A
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAE 248
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)
Query: 220 YRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNALSMLGDLELKN 278
+L Q A + + + L+++A+K+ + A + LG++ K
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYT 337
D A F A K+ + +L LR + E + + +
Sbjct: 151 GDVTSAHTCFSGALT--HCKNKVSLQNLSM-----VLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 338 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--------ASGSVFVQMPDVW 389
+ + + G + + Q+A PD+
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 390 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 426
+N A ++ + ++ A++ + + Q
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ + + AL F + + P E + + L + LL K
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS---RLTSLLESKGK 317
Query: 77 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 124
P+ Q+ + L + G D + + K E P+ L
Sbjct: 318 TKPKKLQSML---GSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQ 362
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 17/86 (19%), Positives = 29/86 (33%)
Query: 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 66
+ ++ Y+ GQ SA EKV N + ++ +
Sbjct: 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE 276
Query: 67 AQELLRKAAKIDPRDAQAFIDLGELL 92
A E +AA +DP + +LL
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLL 302
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 310 NYFAALRNEKRAPKLEAT--HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS- 366
+YF E K + +EK + V+ A G L +
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 367 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-----KFYYNTD 421
+ L ++ + + W L VY+ +G+ A + L N
Sbjct: 123 EVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL- 176
Query: 422 AQILLYLARTHYE--AEQWQDCKKSLLRAIHLAPSNY 456
+ +L L + + D + A+ + +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y G A F + N + + L IY Q ++A +L A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 77 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTA 107
+ D G+ + A + F+
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
+ + D ++ + + I D + + + + + G+IE+A+ R D
Sbjct: 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67
Query: 80 RDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 138
+ + L + A D + A L K + + G
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-----YTPVFHTGQCQLRLKAPLK 122
Query: 139 AHQSFKDAL 147
A + F+ +
Sbjct: 123 AKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
GL + F+ A + + ++ + G ++L KA+E +
Sbjct: 73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132
Query: 77 IDPRDA 82
+
Sbjct: 133 HSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405
+ KG+ + ++ F + + D + LA +Y + F A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQA 89
Query: 406 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455
+Y D + + + + K+ I +
Sbjct: 90 ADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443
M D + A+ ++ +G A ++ +YN D ++ LA + EQ+Q
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--IMGLAAIYQIKEQFQQAAD 91
Query: 444 SLLRAIHLAPSNYTLRFDAGVA 465
A L ++YT F G
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC 113
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 387
+E+A+ + + + N+ G + K QF + DL+
Sbjct: 51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-----YT 105
Query: 388 VWINLAHVYFAQGNFALAMKMYQNCLRK 415
+ A + ++ ++
Sbjct: 106 PVFHTGQCQLRLKAPLKAKECFELVIQH 133
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 65
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 66 KAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 107
A L A +DP+D L + AAL + +
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 12/67 (17%), Positives = 19/67 (28%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG Q + A+ + P + AL + A LR
Sbjct: 54 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113
Query: 77 IDPRDAQ 83
P+ Q
Sbjct: 114 SQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-05
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 389 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448
+ N A A ++ +K +A L T E E+ +L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHA 77
Query: 449 IHLAPSNYTLRFDAGVA 465
L P + + V+
Sbjct: 78 RMLDPKDIAVHAALAVS 94
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413
G+ + + + F EA + + W +L LA+ +
Sbjct: 24 GLSMLKLANLAEAALAF----EAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453
+ LA +H SL + P
Sbjct: 79 MLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252
P+ + ++ + A++ + + K + +A+ L L+I
Sbjct: 13 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII 72
Query: 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291
+N A ++ K + L + A + RA
Sbjct: 73 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 69
+ +G V+ G++ +A F + E+ + + + G + A++
Sbjct: 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128
Query: 70 LLRKAAKI-----DPRD-AQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPI-E 121
K+ D A AF LG+L + A + AR + + + + E
Sbjct: 129 EYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNE 188
Query: 122 VLNNIGVIHFEKGEF 136
++ + +
Sbjct: 189 LMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 33 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRD 81
A + LG++Y + + ++A+ + + D
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 82 -AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFE 137
+A +G + + AA F R LL E+ + + G+
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 138 SAHQSFKDAL 147
A Q ++ +L
Sbjct: 125 GARQEYEKSL 134
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 5/126 (3%)
Query: 24 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83
+ + L + + P N E LG Y+ + R+A ++ +A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 84 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 141
+ L +L + R ++ KA I L + F + + A +
Sbjct: 80 LYAALATVLYYQASQHMTAQ---TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 142 SFKDAL 147
++ +
Sbjct: 137 LWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-10
Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 6/129 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---IEKAQELLRK 73
+ LG+ L D+ ++L + + L++ +N E AL + + + ++ K
Sbjct: 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106
Query: 74 AAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 132
A +D + A + L + A++ ++ L +++ +I +
Sbjct: 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR--TQLVESINMAKLL 164
Query: 133 KGEFESAHQ 141
+ + H
Sbjct: 165 QRRSDLEHH 173
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 15/146 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
+ G + ++ A+ + + + + E + Y + Q +
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 71 LRKAAKI-------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-E 121
+ +A I R Q+ + AL + A L + I
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDAL 147
L NI + G+ + A + F+ A
Sbjct: 224 SLLNIANSYDRSGDDQMAVEHFQKAA 249
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 22/157 (14%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHI 57
++ E ++ + + + ++ + + L+IY ++L +
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191
Query: 58 YVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTL 110
Y +KA L A ++ D A + +++ D A++ F+ A +
Sbjct: 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251
Query: 111 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
++ ++ +VL + + G+ + A Q ++ L
Sbjct: 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 24/262 (9%)
Query: 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 264
+ ++Q+ + + Y L+ F++Q +D YL R + +E + K
Sbjct: 40 QDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 265 PNALS--MLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNEK 319
S G E ++V+A +R A A A
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHM 154
Query: 320 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 379
+ + H+ +A ++Y + + + + +D + E
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE---- 210
Query: 380 SVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQILLYLAR 430
+ + + + +N+A+ Y G+ +A++ +Q R+ + ++L L+
Sbjct: 211 -LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 431 THYEAEQWQDCKKSLLRAIHLA 452
T +A Q Q + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHI 291
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 28/222 (12%), Positives = 59/222 (26%), Gaps = 10/222 (4%)
Query: 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKE 286
+ + +I EA K + + + +
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162
Query: 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 346
A D Y+ ++ + A ++ + HLE A EL I
Sbjct: 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDIQNDRFI 221
Query: 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406
+ G ++ + F + + + V +P V L+ G A
Sbjct: 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF 281
Query: 407 KMYQNCL---RKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445
+ + L + ++ L+L + E + L
Sbjct: 282 QFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 7e-11
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 38/139 (27%)
Query: 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 68
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 69 ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128
E +KA ++DP +A+A+ N+G
Sbjct: 64 EYYQKALELDPNNAEAW--------------------------------------YNLGN 85
Query: 129 IHFEKGEFESAHQSFKDAL 147
++++G+++ A + ++ AL
Sbjct: 86 AYYKQGDYDEAIEYYQKAL 104
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 15/146 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
+ G +L ++ SA+ F+K + E + Y + Q + +
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165
Query: 71 LRKAAKI-------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-E 121
R+A +I + R Q + A+ F+ A ++ + + +
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDAL 147
L NIG+ + ++E A FK A+
Sbjct: 226 TLYNIGLCKNSQSQYEDAIPYFKRAI 251
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 15/155 (9%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIY 58
+ +P Y +G + + A+ F++ + ++ P + + I+
Sbjct: 215 EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274
Query: 59 VQLGQIEKAQELLRKAAKI-----DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 113
+LG+I+KA E K D F L L +S +A + L+
Sbjct: 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP---DEEAIQGFFDFLES 331
Query: 114 AGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 147
+ + ++ + E+ F+ A F
Sbjct: 332 KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 69
++ + + + ++ + EIY + ++ L Q E A
Sbjct: 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205
Query: 70 LLRKAAKI------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-E 121
+KA + + ++G S S A+ FK A + +++ + +
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDAL 147
I IH++ G+ + AH+ +
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGM 291
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 13/153 (8%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIY 58
+ + + L L + A+++F+K + TL +G
Sbjct: 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234
Query: 59 VQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLISS-DTGAALDAFKTARTLL 111
Q E A ++A + P QA+ + ++ A +
Sbjct: 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294
Query: 112 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 144
+KAG+ + + + ++ + E+ F
Sbjct: 295 QKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 27/264 (10%)
Query: 206 LLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVN 261
L+Q+ + + Y L+ F++ ++ ++L L I+ L
Sbjct: 41 ELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100
Query: 262 GKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNE 318
+Y G EL +++ A + F+ A + A + +
Sbjct: 101 LEYYFNFFR-GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEF----FFKMSESYYY 155
Query: 319 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378
+ + +A E+Y + L + + Q++ + F +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS--- 212
Query: 379 GSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYL 428
+ N+ +Q + A+ ++ + F + Q +
Sbjct: 213 --MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 429 ARTHYEAEQWQDCKKSLLRAIHLA 452
+ HY+ + + + + +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYS 294
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ LG+ + F +AL + L+ P K LG G A++
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 77 IDPR--DAQAFIDLGELLISSDTGAALDAFK 105
D Q +L L AL+
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92
E +L DN LG Y + Q + A LR A DP + A+ LG+ L
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 93 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128
D A A+++ L A +V+ + V
Sbjct: 64 QGQGDRAGARQAWESG---LAAAQSRGDQQVVKELQV 97
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 5e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 68
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 69 ELLRKAAKIDPRDAQAFIDLGELL 92
E +KA ++DP +A+A +LG
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAK 87
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y GLG LG++R A ++ +P++ + LG+ E+ ELL K
Sbjct: 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89
Query: 77 IDPRD 81
D
Sbjct: 90 ETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 27 LGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83
LG A+ +EK + D E LG + LG+ KA+ +L K P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 84 AFIDLGELL 92
+ +L
Sbjct: 63 LRVFYAMVL 71
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 4e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
YY G +Q G++ ++ FEK +++ P+ + G L + E+A +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 77 I--DPRDAQAFIDLGELL 92
+ D + + + L
Sbjct: 69 VIEDEYNKDVWAAKADAL 86
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 6e-07
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKA 74
+ G+ L + A+ + V+ + D N + A + E E+
Sbjct: 43 WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102
Query: 75 AKIDPRDA 82
AK++
Sbjct: 103 AKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-05
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 43 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG---A 99
+ N E G + G ++ +L KA ++DP +++ ++ G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEE 58
Query: 100 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
A+D + + +E +V E + +
Sbjct: 59 AVDCYNYV---INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 5e-08
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAK 76
L LKL ++ A+ +K L + N K L G + + + E A+ K +
Sbjct: 323 LAMCYLKLREYTKAVECCDKALGLDSANE---KGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 77 IDPRDAQA 84
++P++ A
Sbjct: 380 VNPQNKAA 387
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAK 76
+ +KL + A+ + VL N KAL G +LGQ++ A++ RKA K
Sbjct: 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 77 IDPRDAQA 84
P D
Sbjct: 293 YAPDDKAI 300
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 15/74 (20%), Positives = 31/74 (41%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ KLG++ A+ + E+ + I P + +G L + +A +KA +
Sbjct: 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
Query: 77 IDPRDAQAFIDLGE 90
+DP + +L
Sbjct: 109 LDPDNETYKSNLKI 122
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Query: 1 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 60
+ +++ ++ + + A F+++ + L ++
Sbjct: 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212
Query: 61 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 114
G+ E A+ +L++A D + I+L L G + + LK A
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ--HLGKPPEVTNRYLSQLKDA 264
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-07
Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 7/142 (4%)
Query: 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 65
+ + + +AL + + I ++L +++
Sbjct: 93 SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA-----MTVQILLKLDRLD 147
Query: 66 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125
A++ L+K D + + +++ DA+ + + K + +LN
Sbjct: 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL--LLLNG 205
Query: 126 IGVIHFEKGEFESAHQSFKDAL 147
H +G +E+A ++AL
Sbjct: 206 QAACHMAQGRWEAAEGVLQEAL 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 34/269 (12%), Positives = 80/269 (29%), Gaps = 18/269 (6%)
Query: 24 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82
+G ++ + ++V P+ E L Y+ + + ++ + +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL 65
Query: 83 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 142
QA E L + + ++ + L I+F ++A ++
Sbjct: 66 QAVRMFAEYL--ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 143 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202
+ I L +L + D + +
Sbjct: 124 LHQGDSLECMAMTVQ-------ILLKLDRLDLARKELKKMQDQDEDATLTQLAT--AWVS 174
Query: 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262
LA E++ D A +++ + K + AA A+ + + ++ EAL +
Sbjct: 175 LAAGGEKLQD---AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 263 KYPNALSMLGDLELKNDDWVKAKETFRAA 291
+P L L L + + +
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIE 65
+K + G + G + +A ++ L+ + ETL L + LG E
Sbjct: 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252
Query: 66 KAQELLRKAAKIDPRDA 82
L +
Sbjct: 253 VTNRYLSQLKDAHRSHP 269
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE------TLKALGHIYVQLGQIEKAQEL 70
Y A + + E + +N + G + L ++ +A +
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 71 LRKAAKI-----DPRD-AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVL 123
+ KA+ + P A A G+L+ D A+ ++ A + + E++
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164
+ + +F+ A S + + + K +
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIY 58
+ + + ++ ++ F A + +K +Y P + A +
Sbjct: 146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205
Query: 59 VQLGQIEKAQELLRKAAKI----DPRDAQAFIDLGELLISSDTGAALDAFK 105
+ AQ+ +R++ I D A DL + D L +
Sbjct: 206 LHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 226 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 279
Y Y + A K L+ + + + + + A G +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339
+A + AS + T AA+ ++ +E L KA LY +
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDT---------AAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 340 IV------QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINL 392
+ A +L + +FD + + + + I
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 393 AHVYFAQGNFALAMKMYQNCL 413
V + ++ A K +
Sbjct: 202 VLVQLHRADYVAAQKCVRESY 222
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 12/189 (6%)
Query: 44 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELLIS-SD 96
Y + Q+E+A++ + A+ + A+AF G +L
Sbjct: 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR 91
Query: 97 TGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 155
A+ + A + + G L+ G + E + A ++ A
Sbjct: 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEER 150
Query: 156 LDSKTKTY--VIDASASMLQFKD-MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 212
L + +F + + ++ +E + D
Sbjct: 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210
Query: 213 TVAASVLYR 221
VAA R
Sbjct: 211 YVAAQKCVR 219
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAK 76
L LKL F +A+ + K LE+ +N K L G ++ + E A+ +K +
Sbjct: 202 LAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQ 258
Query: 77 IDPRDAQA 84
+ P + A
Sbjct: 259 LYPNNKAA 266
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 51/324 (15%), Positives = 110/324 (33%), Gaps = 37/324 (11%)
Query: 422 AQILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNYTL--RFDAGVAMQKFSASTLQKT 477
I +L R Y + + ++ R + H A T R A + +QKF +
Sbjct: 776 KTIRGWLMRKKYM--RMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ--RMYVV 831
Query: 478 RRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREA 537
R+ +R L+ +R + N + E K ++ + L HR
Sbjct: 832 RKRYQCMRDATIALQALLRGY----LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 538 AEREEQQNRQRQEAARQA--ALAEEARR-KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 594
Q R+ A++ L EAR + ++ LE K+ Q+++ +Q + ++
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN-KIMQLQRKIDEQNKEYKS 946
Query: 595 VKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMD 654
+ E+ + +++ +R R + K + + E A+
Sbjct: 947 LLEKMN------NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR--- 997
Query: 655 YREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRR 714
+E + + E + + + + ++ E + RR
Sbjct: 998 -KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE-----------LNRR 1045
Query: 715 RALSESDDDEPFERQLRDNTDELQ 738
+ E E++L + T +L+
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLE 1069
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 6e-07
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 530 AAKIHREAAE-----REEQQNR----QRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 580
A + E REEQ+ R + E+A++ EE + ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEK 133
Query: 581 EQKRLRQQEEHFQR 594
+ R ++ F +
Sbjct: 134 NKINNRIADKAFYQ 147
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 531 AKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEE 590
A+ R E E + + ++ R L ++ +E ++ + +K +E ++Q E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWN--QRQSE 129
Query: 591 HFQRVKEQWRSSTPASKRRERSENDDD 617
++ K R + + + D D
Sbjct: 130 QVEKNKINNR----IADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 9e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 543 QQNRQRQEAARQAALAEEARRK-AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 601
Q +R QE E+ RK EEQ+K RL++ + + ++++WR
Sbjct: 76 QADRLTQEP--------ESIRKWREEQRK-------------RLQELDAASKVMEQEWRE 114
Query: 602 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 646
+ + + ++ SE+ + R DK+ + +
Sbjct: 115 -------KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAK 76
+ Q L +GD A +VL+ N KAL + ++++A+E L+ +
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 77 IDPRDAQA 84
P A
Sbjct: 126 NHPAAASV 133
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRK 73
Y LG+ +F+ A F ++ YP + L LG G+ +AQ+ L++
Sbjct: 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101
Query: 74 AAKIDPRDAQA 84
A P A
Sbjct: 102 VATQYPGSDAA 112
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAK 76
L K D+ A+ + KVL+I +N +KAL G + G +E+A+E L KAA
Sbjct: 94 LATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAAS 150
Query: 77 IDPRDAQA 84
++P +
Sbjct: 151 LNPNNLDI 158
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 21/148 (14%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIY-----PDNCETLKA---LGHIYVQLGQIEKAQELL 71
L + G + + LEIY PD+ K L Y++ G+ + A+ L
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192
Query: 72 RKAAKI---------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVP-- 119
++ + + ++ E S + + + K + P
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG-SWYKACKVDSPTV 251
Query: 120 IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
L ++G ++ +G+ E+AH A
Sbjct: 252 NTTLRSLGALYRRQGKLEAAHTLEDCAS 279
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 33/158 (20%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY-----PDNCETLKA---LGHIYVQLGQIEKAQ 68
L + K G ++ A ++ LEI + + K L + G+ E+ +
Sbjct: 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147
Query: 69 ELLRKAAKI--------DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA------ 114
R+A +I DP A+ +L ++ A TL K+
Sbjct: 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCY------LKQGKYQDAETLYKEILTRAHE 201
Query: 115 ---GEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
G + + K + + +
Sbjct: 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 32/158 (20%)
Query: 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKA 67
+ L SA+ ++ LE PD L L +Y + ++A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 68 QELLRKAAKI--------DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----- 114
LL A I P A +L L +K A L K+A
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLY------GKRGKYKEAEPLCKRALEIRE 116
Query: 115 ---GEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
G+ P + LNN+ ++ +G+ E ++ AL
Sbjct: 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 6e-06
Identities = 86/601 (14%), Positives = 156/601 (25%), Gaps = 203/601 (33%)
Query: 220 YRLILFKYQD---------YVDAYLR-------LAAIAKARNNLQLSIELVNEALKVNGK 263
Y+ IL ++D V + + I +++ + ++ L L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE 76
Query: 264 YPNALSM-LGDLELKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 320
+ + ++ N ++ + K R S T L N N A N R
Sbjct: 77 --EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 321 APKLEA--THLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEKGQFDVSKDLFTQVQEAA 377
L + + + ++ + G+G +A DV +VQ
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL-----IDGVLGSGKTWVA----LDVCLSY--KVQCKM 180
Query: 378 SGSVFVQMPDVWINLAHV--------------YFAQGNFA-------------------- 403
+F W+NL + Y N+
Sbjct: 181 DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 404 ---LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ----DCKKSLLRAIHLAPSNY 456
L K Y+NCL ++L A+ W C K LL
Sbjct: 235 RRLLKSKPYENCL----------LVL---LNVQNAKAWNAFNLSC-KILL---------- 270
Query: 457 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK 516
T R V S T + D T+ E + L D +
Sbjct: 271 TTR-FKQVT---DFLSAATTTHISLDHHSMTLTPDE-VKSLL-----LKYLDCRPQDLPR 320
Query: 517 INTHVEYCKHL-----LDAAKIHREAA--EREEQQNRQRQEAARQAALAEEARRKAEEQK 569
E + A I A + + N + +++L AE +K
Sbjct: 321 -----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRK 373
Query: 570 KY---------------LLEKRKLEDEQKRLRQQEEHFQR---VKEQWRSST---PASKR 608
+ LL + + + + V++Q + ST P+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 609 RERSENDDDEVGHS---EKRRRKGGKRRKKDKSSRS--------------H-YETEYAEA 650
+ + +++ H + + D H E+ E
Sbjct: 434 ELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 651 DMM------DYR---------EEPEDEDASM--------NYREPIGQMNDQDDDVEENAN 687
+ D+R + S+ Y+ I D D E N
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVN 546
Query: 688 D 688
Sbjct: 547 A 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 7e-06
Identities = 60/404 (14%), Positives = 113/404 (27%), Gaps = 152/404 (37%)
Query: 29 DFRSALTNFEKVLE-----IYPDNCETL--KALGHIYVQLGQIEKAQELLRKAAKIDPRD 81
DF SA T L+ + PD ++L K L + Q+L R+ +P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---------RPQDLPREVLTTNP-- 327
Query: 82 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 141
+S ++ E + G+ ++
Sbjct: 328 ---------RRLS---------------II---AESIR------DGLATWDN-------- 346
Query: 142 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ-LFHR---FENDGNHVELP---- 193
W + K T +I++S ++L+ + + +F R F +P
Sbjct: 347 ----------WKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILL 392
Query: 194 ---WNKVTVLFNLARLLEQIHDTVAASVLYRLIL-----FKYQDYVDAYLRLAAIAKARN 245
W V + V Y L+ YL L K N
Sbjct: 393 SLIWFDVIK--------SDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELK--VKLEN 441
Query: 246 NLQLSIELVN-----EALKVNGKYPNALSM---------LGDLELK-----------NDD 280
L +V+ + + P L L ++E +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 281 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340
+++ K R S A + S N L+ K ++ Y R++
Sbjct: 502 FLEQK--IRHDSTAWNASGSIL-------NTLQQLKFYKP-------YICDNDPKYERLV 545
Query: 341 -------VQHTSNLYAANGAGVV---LAEKGQFDVSKDLFTQVQ 374
+ NL + ++ L + + + ++ QVQ
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQVQ 588
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 21/151 (13%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY-----PDNCETLKA---LGHIYVQLGQIEKAQ 68
L + G + +++ LEIY PD+ K L Y++ G+ ++A+
Sbjct: 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215
Query: 69 ELLRKAAKI---------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEV 118
L ++ D + ++ E + K +
Sbjct: 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW-YKACKVDS 274
Query: 119 P--IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
P L N+G ++ +G+FE+A + A+
Sbjct: 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 32/157 (20%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQ 68
+ L G + A+ ++ LE PD L L +Y + + A
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 69 ELLRKAAKI--------DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA------ 114
LL A I P A +L L +K A L K+A
Sbjct: 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLY------GKRGKYKEAEPLCKRALEIREK 143
Query: 115 --GEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
G++ P + LNN+ ++ +G++E ++ AL
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 20/151 (13%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQ 68
L V ++ A L I P TL L +Y + G+ ++A+
Sbjct: 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 131
Query: 69 ELLRKAAKID--------PRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKA-GEEV 118
L ++A +I P A+ +L L + ++ A + + G +
Sbjct: 132 PLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191
Query: 119 P--IEVLNNIGVIHFEKGEFESAHQSFKDAL 147
P + NN+ + ++G+F+ A +K+ L
Sbjct: 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 31/242 (12%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 515 KKINTHVEYCKHLLDAAKIHREAAERE------EQQNRQRQEAARQAALAEEARRKAEEQ 568
+ + ++ K A+ + E++ E+ Q + A AE +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 569 KKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 628
K + L + + R+ ++EE Q+++ + K +++ + ++++ E R+K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAE------KKKMQQQMLDLEEQLEEEEAARQK 973
Query: 629 GGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND 688
+ +K + + + E D++ ++ E + EE
Sbjct: 974 ----LQLEKVTADG-KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 689 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 748
L + + E+ + + R E + E + D +++ + ++ E
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK-LEGESSDLHEQIAELQAQIAELK 1087
Query: 749 HK 750
+
Sbjct: 1088 AQ 1089
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 16/230 (6%)
Query: 237 LAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA 291
A +A N + L AL+ A S+LG++ + ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 292 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351
D + L + T + + + + + Q + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 411
+L + D ++ E S Q L A+G+ A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 412 C---LRKFYYNTDAQILLYLARTHY--------EAEQWQDCKKSLLRAIH 450
L Y++D R Y A W A +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 33/263 (12%), Positives = 73/263 (27%), Gaps = 23/263 (8%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLGQIEKAQELLRK 73
LG+V G+ +L ++ ++ + +L I G ++ A E K
Sbjct: 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118
Query: 74 AAKI--------DPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLN 124
A ++ P +LL + A + ++ +L + ++ L
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178
Query: 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 184
+ +G+ ++A D +
Sbjct: 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238
Query: 185 NDGNHVELPWNKVTV--LFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLR 236
E N N+AR + + A ++ + + D L
Sbjct: 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298
Query: 237 LAAIAKARNNLQLSIELVNEALK 259
L + + ++ +ALK
Sbjct: 299 LNQLYWQAGRKSDAQRVLLDALK 321
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
Y L G + +++ + LG +Y G +A + A
Sbjct: 280 YQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338
Query: 77 IDPRDAQAF 85
+ P +
Sbjct: 339 LRPGANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%)
Query: 38 EKVLEIYPDNCETLKAL--GHIYVQLG---QIEKAQELLRKAAKIDPRDAQAFIDLGE-- 90
E + +I P L H Y+ G + +A ELL + + P A +
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243
Query: 91 LLISSDTGAALDAFKTARTLLKKAGEEVPI----EVLNNIGVIHFEKGEFESAHQSFKDA 146
++ S T + + + V KG+ + ++Q+
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
Query: 147 L 147
+
Sbjct: 304 I 304
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAK 76
+G +LK+ D++ A+ + + LEI P N KAL + L + ++A L+KA +
Sbjct: 279 IGACKLKMSDWQGAVDSCLEALEIDPSNT---KALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 77 IDPRDA 82
I P D
Sbjct: 336 IAPEDK 341
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 1/145 (0%)
Query: 514 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 573
++ + +E + +AA H +E + R ++ + AE+AR++ E + +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 574 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 633
+ + + E + E + E + E+ +K R
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIET-EAELERVKKVREMELIYA 773
Query: 634 KKDKSSRSHYETEYAEADMMDYREE 658
+ + A + ++E
Sbjct: 774 RAQLELEVSKAQQLANVEAKKFKEM 798
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 10/239 (4%)
Query: 462 AGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA----ASNLHLHGFDEKKI 517
A V F ++ + R + + + + L + D + +
Sbjct: 584 ASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSV 643
Query: 518 NTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRK 577
+ DA + + A +++ L +EAR + E QK +L++ +
Sbjct: 644 E---PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQK--ILDQSE 698
Query: 578 LEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDK 637
E +K L + E V+ + A R E + + + K + + + +
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Query: 638 SSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLE 696
R E E + E E A + + + + LA AG E
Sbjct: 759 LERVKKVRE-MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 15/176 (8%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQEL 70
+ + A +F K + + T + G A +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 71 LRKAAKIDPRD------AQAFIDLGELLIS--SDTGAALDAFKTARTLLKKAGEEVPI-E 121
L A +I A +LGE+L + D A+D ++ A + +
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159
Query: 122 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 177
+ G++ A + + + L K Y + L D
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-05
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRD 81
K GD++ A + K +++ PD K L + E+A+ + K + +
Sbjct: 49 AKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
Query: 82 AQAFIDLGEL 91
Q L +
Sbjct: 106 PQLKEGLQNM 115
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRD 81
KL +F+ AL + + + + +K V + + KAQ A ++DP +
Sbjct: 58 TKLMEFQRALDDCDTCIRLDSKF---IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
Query: 82 AQA 84
+A
Sbjct: 115 EEA 117
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 22 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKID 78
LKL D+ A T K +E + +KAL +LG++++A L++ ++
Sbjct: 73 ACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
Query: 79 PRDAQA 84
P++
Sbjct: 130 PKNKVF 135
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRD 81
KL +F+ AL + E+ +++ P +K + KA ++ +KA +D
Sbjct: 61 TKLLEFQLALKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117
Query: 82 AQAFIDLGELL 92
+A +
Sbjct: 118 KEAADGYQRCM 128
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 22 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 81
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 82 AQAFIDLGELL 92
L L+
Sbjct: 65 LPGASQLRHLV 75
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83
+ GD +AL E+ L+ P E +G+ Y +LG +KA + A +++P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 84 AF 85
Sbjct: 71 LQ 72
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQE 69
Y V + F + EK +E+ + K G+ + + + A +
Sbjct: 45 YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104
Query: 70 LLRKAAKIDP 79
++
Sbjct: 105 WFHRSLSEFR 114
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84
G A + E + P + LG + + A+E K + +
Sbjct: 56 SASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84
L+ + AL + + +E+ + + LG+ A K+ P D A
Sbjct: 58 LRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117
Query: 85 FIDLGEL 91
+ E
Sbjct: 118 KMKYQEC 124
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 83
L+ G+ AL + + + + A ++ Q E AQELL +
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76
Query: 84 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 139
+ I EL + L + A E+ + V + + G E A
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQEL-----AANPDNFELACELAVQYNQVGRDEEA 127
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84
KL F A+ + K +E P+ + + + A E L A D
Sbjct: 49 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 9e-04
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQE 69
V + GD+ EK +E+ +N E + +G+ Y + + + A
Sbjct: 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100
Query: 70 LLRKAAKIDP 79
K+
Sbjct: 101 FYNKSLAEHR 110
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 760 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.93 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.93 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.92 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.91 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.91 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.91 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.9 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.89 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.88 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.87 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.87 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.86 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.86 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.86 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.86 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.85 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.84 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.83 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.83 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.81 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.81 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.8 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.79 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.77 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.76 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.74 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.72 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.71 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.69 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.6 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.6 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.55 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.54 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.53 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.52 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.48 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.45 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.42 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.42 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.41 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.4 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.4 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.38 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.36 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.35 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.25 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.2 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.97 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.94 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.89 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.88 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.75 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.64 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.62 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.59 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.46 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.4 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.28 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.26 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.18 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.12 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.89 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.71 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.6 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.52 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.52 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.92 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.88 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.74 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.34 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.22 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.83 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.57 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.5 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.46 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.31 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.14 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.96 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.88 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.3 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.81 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.5 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.16 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.97 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 92.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.58 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.45 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.25 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.72 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.45 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 90.39 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 90.21 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.5 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.24 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 83.03 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 82.92 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.78 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=374.22 Aligned_cols=384 Identities=20% Similarity=0.253 Sum_probs=370.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
.+.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++..++..+|.++.+|..+|.++. .|
T Consensus 2 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 175 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 175 (760)
++++|+..|++++.+.|.. +.++..+|.++...|++++|+..|.+++.
T Consensus 82 ~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------- 129 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDF-----IDGYINLAAALVAAGDMEGAVQAYVSALQ--------------------------- 129 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHSCSSHHHHHHHHHHH---------------------------
T ss_pred CHHHHHHHHHHHHHcCcch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------
Confidence 9999999999999999986 89999999999999999999999999987
Q ss_pred hHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 176 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
..|+...++..+|.++...|++++|+.+|.+++..+|.+..+|..+|.++...|++++|+.+|+
T Consensus 130 ----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 130 ----------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp ----------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHH
Q 004339 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 335 (760)
Q Consensus 256 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 335 (760)
+++..+|+++.++..+|.++...|++++|+..|.+++...|. ++.++..+|.+ |... |+++.|+.+
T Consensus 194 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~ 259 (388)
T 1w3b_A 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDT 259 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHH-HHHc------------CCHHHHHHH
Confidence 999999999999999999999999999999999999999987 88999999999 9998 999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 336 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
|++++..+|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++..
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998 88999999999999999999999999999996
Q ss_pred hcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 416 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 416 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
.|.++.+++.+|.+|...|++++|+.+|++++.++|+++.+++++|.++..+
T Consensus 335 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 335 --FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 6778999999999999999999999999999999999999999999987654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=350.41 Aligned_cols=364 Identities=18% Similarity=0.195 Sum_probs=350.7
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+.+..+|+++.+++.+|.+++..|++++|+.+++.++..+|.++.+|..+|.++...|++++|+.+|++++.++|+++.+
T Consensus 24 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 103 (388)
T 1w3b_A 24 QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..+|.++. .|+++.|+..|.+++.+.|.. ..++..+|.++...|++++|+.+|.+++.
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 163 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDL-----YCVRSDLGNLLKALGRLEEAKACYLKAIE--------------- 163 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-----THHHHHHHHHHHTTSCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------
Confidence 999999998 899999999999999999986 78999999999999999999999999987
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..|..+.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 164 ----------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 164 ----------------------------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp ----------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred ----------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCch
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 323 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~ 323 (760)
.|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|.+++...|. .+.++..+|.+ |...
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~--------- 284 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANA-LKEK--------- 284 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHH-HHHH---------
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHc---------
Confidence 999999999999999999999999999999999999999999999999999887 88899999999 9999
Q ss_pred HHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 324 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 324 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++...| .++.++.++|.+|...|+++
T Consensus 285 ---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 285 ---GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp ---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHTTTCCH
T ss_pred ---CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999988 88999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+|+..|++++.. .|..+.+++.+|.++..+|+
T Consensus 357 ~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 357 EALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 999999999996 77889999999999988774
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=350.32 Aligned_cols=434 Identities=14% Similarity=0.049 Sum_probs=373.7
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
.++..|..++..+...|++++|+.+|.+++...|+. ..++.+|.+|...|++.+|+.+|.+++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 456678899999999999999999999999999854 77889999999999999999999998765 6688999999999
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhc--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhh
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKA--------------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
|. .|++++|+..|.+. .|.. +.+..+.+|+.+|.+|...|++++|+.+|.+++..+|.....
T Consensus 160 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 98 88999999999863 2221 001137899999999999999999999999999987743222
Q ss_pred cccchhhhh---------------h----hhh----------HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHH
Q 004339 157 DSKTKTYVI---------------D----ASA----------SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 207 (760)
Q Consensus 157 ~~~~~~~~~---------------~----~~~----------~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~ 207 (760)
........+ . ... .......+.+..++..+...+.. |.++.+++.+|.+|
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHH
Confidence 111100000 0 000 00001223333444444444444 67889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 287 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 287 (760)
...|++++|+.+|.+++...|.+..++..++.++...|++++|+.++.+++...|.++.++..+|.+|...|++++|+.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004339 288 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 367 (760)
Q Consensus 288 ~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 367 (760)
|.+++...|. +..++..++.+ |... |++++|+.+|++++...|.+..+++.+|.+|...|++++|+
T Consensus 396 ~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 396 FSKSSTMDPQ-FGPAWIGFAHS-FAIE------------GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999998887 88899999999 9999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc----CCCc-HHHHHHHHHHHHHhccHHHHH
Q 004339 368 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY----YNTD-AQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 368 ~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~-~~~~~~la~~~~~~g~~~~A~ 442 (760)
.+|.+++...| .++.+|..+|.+|...|++++|+.+|++++...+ .|.+ ..++..+|.+|...|++++|+
T Consensus 462 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 462 EYLQSSYALFQ-----YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998 7899999999999999999999999999999753 3333 889999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 443 KSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+|++++.+.|+++.+++.++.+|...|
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999988776
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=341.15 Aligned_cols=399 Identities=14% Similarity=0.126 Sum_probs=361.1
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+.+++.+|..++..|+|++|+.+|++++..+| ++.+++.+|.++...|++++|+..|.+++.++|.++.+++.+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCC-------------------------------------------------------
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGE------------------------------------------------------- 116 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~------------------------------------------------------- 116 (760)
. .|++.+|+..|.+++...|....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 8 88999999999999887762100
Q ss_pred -------------------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhc-----c--cchhhhhcccchhhhhhh
Q 004339 117 -------------------EVPIEVLNNIGVIHFE---KGEFESAHQSFKDALG-----D--GIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 117 -------------------~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~~~~~~~~~~~~~ 167 (760)
+....+++.+|.+++. .|+++.|+.+|.+++. . .|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------------- 229 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED-------------- 229 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC--------------
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc--------------
Confidence 1126777888888886 8999999999999987 2 1100
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 247 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 247 (760)
....|..+.+++.+|.++...|++++|+.+|.+++...|. ..++..+|.++...|++
T Consensus 230 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 230 ----------------------EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDS 286 (514)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCC
T ss_pred ----------------------cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCH
Confidence 0013667889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 248 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 248 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|. +..++..+|.+ |... |
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~ 352 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------N 352 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------T
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH-HHHc------------C
Confidence 99999999999999999999999999999999999999999999999888 78899999999 8888 9
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHH---cCCHH
Q 004339 328 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA---QGNFA 403 (760)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~---~g~~~ 403 (760)
+++.|+.+|.+++...|.++.++..+|.++...|++++|+.+|.+++...|.... .....+++.+|.++.. .|+++
T Consensus 353 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 9999999999999999999999999999999999999999999999999983210 0114499999999999 99999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+|+..|++++.. .|.++.++..+|.+|...|++++|+.+|++++.++|+++.++..+..+
T Consensus 433 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 433 EATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999999996 677899999999999999999999999999999999999988877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=348.92 Aligned_cols=421 Identities=14% Similarity=0.073 Sum_probs=315.4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------------
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID---------------- 78 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 78 (760)
..++.+|.+|...|++++|+.+|.+++.. |.++.++..+|.+|...|++++|+.+|.+.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence 44555666666666666666666655433 4455556666666666666666665555422111
Q ss_pred CCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH-------------------------------
Q 004339 79 PRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI------------------------------- 126 (760)
Q Consensus 79 p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l------------------------------- 126 (760)
|.++.+|..+|.+|. .|++++|+..|++++...|.. ..++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC-----YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh-----hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 112555555565555 556666666666665555443 2222211
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 127 -------GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 127 -------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.+|...|++++|+.+|.+++...+. ..... .........+.+..++..+...+...|.+..+
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~---------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 341 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS-SDLLL---------CKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGC-HHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTT
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcCCch-HHHHH---------HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHH
Confidence 33444445555555555444432110 00000 00000011111112222222222255678889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+..++.++...|++++|+.+|.+++...|.++.++..+|.+|...|++++|+.+|.+++...|.+..+|..++.+|...|
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
++++|+.+|.+++...|. +..++..+|.+ |... |++++|+.+|++++...|.++.++..+|.+|..
T Consensus 422 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487 (597)
T ss_dssp CHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999887 88999999999 9999 999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHhcC-CCCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 360 KGQFDVSKDLFTQVQEAASG-SVFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~~p~-~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
.|++++|+.+|.+++...|. ...|.. +.+|..+|.+|...|++++|+..|++++.. .|.++.++..+|.+|...|+
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCC
Confidence 99999999999999999642 111243 789999999999999999999999999997 67789999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
+++|+.+|+++++++|+++.++..++.+|.
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999998763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.15 Aligned_cols=423 Identities=14% Similarity=0.142 Sum_probs=334.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+..++.+|..++..|+|++|+.+|++++..+|+++.+++.+|.+|..+|++++|+..|++++.++|+++.+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh-----------------
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT----------------- 154 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------- 154 (760)
. .|++.+|+..|+ ++.+.|... ..+ ...+...+....|+..+..++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~-----~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFD-----GAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCC-----hHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 8 899999999995 777766642 111 1122222333444444444443211000
Q ss_pred -----------hhcccch-------hhhh-hhhhHHHHHHhHHhhhhhhccCCCccCCcch-------HHHHHHHHHHHH
Q 004339 155 -----------LLDSKTK-------TYVI-DASASMLQFKDMQLFHRFENDGNHVELPWNK-------VTVLFNLARLLE 208 (760)
Q Consensus 155 -----------~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-------~~~~~~la~~~~ 208 (760)
....... ...+ .............+..++..+...+...|.+ ..+++.+|.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 0000000 0000 0000000001112222222222233345554 346888999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (760)
..|++++|+.+|.+++..+|. ..++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004339 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 289 ~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 368 (760)
.+++...|. ...++..+|.+ |... |+++.|+.+|.+++..+|.++.++..+|.++...|++++|+.
T Consensus 334 ~~a~~~~~~-~~~~~~~la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 334 QKAQSLNPE-NVYPYIQLACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHCTT-CSHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999888 78899999999 9988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-CchHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 369 LFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 369 ~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+|.+++...|..... .....++.+|.++... |++++|+.+|++++.. .|.++.+++.+|.+|...|+
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcc
Confidence 999999999833211 2345578889999999 9999999999999997 67889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhh
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFD 461 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~ 461 (760)
+++|+.+|++++.+.|.++.....
T Consensus 478 ~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999998776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=320.59 Aligned_cols=398 Identities=16% Similarity=0.152 Sum_probs=327.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
.+..++.+|.+++..|++++|+.+|++++..+|+++.++..+|.++. .|++..|+..|.+++.+.|.+ +.+++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 98 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-----SKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-----HHHHHH
Confidence 46889999999999999999999999999999999999999999998 899999999999999999987 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh--hhhhhhHHH-----------------------HHHhHHhh
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY--VIDASASML-----------------------QFKDMQLF 180 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~ 180 (760)
+|.+|...|++++|+..|. ++...|............ ........+ .+......
T Consensus 99 la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999996 777665432221110000 000000000 00000111
Q ss_pred hhhhccCCCccCCcchHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHcCCcHH-------HHHHHHHHHHHcC
Q 004339 181 HRFENDGNHVELPWNKVTVLFNLARLL--------EQIHDTVAASVLYRLILFKYQDYVD-------AYLRLAAIAKARN 245 (760)
Q Consensus 181 ~~l~~~~~~~~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g 245 (760)
..+..+.......+........++.++ ...|++.+|+.+|.+++..+|.+.. ++..+|.++...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 122233333444444444444444443 3346899999999999999999865 5778888999999
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHH
Q 004339 246 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 325 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~ 325 (760)
++++|+.+|.+++..+|. +.++..+|.++...|++..|+.+|.+++...|. .+.++..+|.+ |...
T Consensus 258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~----------- 323 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQM-YFIL----------- 323 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT-----------
T ss_pred cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHH-HHhc-----------
Confidence 999999999999999999 999999999999999999999999999999987 88999999999 9988
Q ss_pred hhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 326 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
|+++.|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|
T Consensus 324 -~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 324 -QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-----TLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp -TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHH
T ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHHHhhhcCCCc----HHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 406 MKMYQNCLRKFYYNTD----AQILLYLARTHYEA----------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 406 ~~~~~~al~~~~~~~~----~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+..|++++...+.... ...++.+|.+|... |++++|+.+|++++.++|+++.+++++|.++...|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999999998644333 44577889999999 99999999999999999999999999999988776
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=319.18 Aligned_cols=398 Identities=13% Similarity=0.059 Sum_probs=339.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
.+.+++.+|.+++..|++.+|+.+|++++..+| ++.++..+|.++. .|++..|+..|.+++.+.|.+ +.+++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 78 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-----SKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-----HHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-----HHHHHH
Confidence 367899999999999999999999999999999 6999999999999 899999999999999999886 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHh-----------------------------
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD----------------------------- 176 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 176 (760)
+|.+|...|++++|+..|.+++..+|.........................
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999999999998763221111000000000000000000
Q ss_pred ---HHhhhhhhccCCC----ccCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----H--c-------CCcHH
Q 004339 177 ---MQLFHRFENDGNH----VELPWNKVTVLFNLARLLEQ---IHDTVAASVLYRLILF-----K--Y-------QDYVD 232 (760)
Q Consensus 177 ---~~~~~~l~~~~~~----~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~-------p~~~~ 232 (760)
......+..+... .-..|.++.+++.+|.++.. .|++++|+.+|.+++. . . |..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 0000000000000 01236678899999999887 8999999999999998 5 3 55678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHH
Q 004339 233 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 312 (760)
Q Consensus 233 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~ 312 (760)
+++.+|.++...|++++|+.+|.+++...|. +.++..+|.++...|++.+|+.+|.+++...|. ...++..+|.+ |.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM-NF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHH-HH
Confidence 8999999999999999999999999999999 999999999999999999999999999999887 78899999999 99
Q ss_pred HHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 004339 313 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392 (760)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l 392 (760)
.. |+++.|+.+|.+++...|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+
T Consensus 316 ~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l 378 (514)
T 2gw1_A 316 IL------------QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNFF 378 (514)
T ss_dssp HT------------TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-----TCSHHHHHH
T ss_pred Hh------------CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-----cCHHHHHHH
Confidence 88 9999999999999999999999999999999999999999999999999998 789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 393 AHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYE---AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
|.++...|++++|+.+|++++...+.... ..+++.+|.++.. .|++++|+.+|++++.+.|+++.+++.+|.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999999998655443 5599999999999 9999999999999999999999999999999
Q ss_pred HHHHH
Q 004339 466 MQKFS 470 (760)
Q Consensus 466 ~~~~~ 470 (760)
+...+
T Consensus 459 ~~~~g 463 (514)
T 2gw1_A 459 KLQQE 463 (514)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=313.72 Aligned_cols=326 Identities=14% Similarity=0.154 Sum_probs=236.1
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (760)
.+.+..+|.++..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|.+++..+|.++.
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 95 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHh
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPI---EVLNNI------------GVIHFEKGEFESAHQSFKDAL 147 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al 147 (760)
++..+|.+|. .|++++|+.+|.+++.+.|.. . .++..+ |.++...|++++|+.+|.+++
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-----NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988 789999999999999887764 4 454444 555777777777777777776
Q ss_pred cccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 148 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 227 (760)
Q Consensus 148 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 227 (760)
. ..|.++.+++.+|.+|...|++++|+.+|.+++..+
T Consensus 171 ~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 171 E-------------------------------------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp H-------------------------------------------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred H-------------------------------------------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5 345566777777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH------------HHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML------------GDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
|.++.++..+|.++...|++++|+.+|.+++...|+++.++..+ |.++...|++.+|+.+|.+++...
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777766555 556666666666666666666655
Q ss_pred CCCC---hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004339 296 DGKD---SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 372 (760)
Q Consensus 296 ~~~~---~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 372 (760)
|... ...+..+|.+ +... |++++|+.+|++++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 288 p~~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHC-FSKD------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp CSSHHHHHHHHHHHHHH-HHTT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5411 2244555555 5555 6666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCCCCchHHHHHHHHH
Q 004339 373 VQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 373 al~~~p~~~~~~~~~~~~~la~~ 395 (760)
++++.| .++.++..++.+
T Consensus 355 al~~~p-----~~~~~~~~l~~~ 372 (450)
T 2y4t_A 355 AQEHNE-----NDQQIREGLEKA 372 (450)
T ss_dssp HHTTSS-----SCHHHHHHHHHH
T ss_pred HHHhCc-----chHHHHHHHHHH
Confidence 666655 555555555543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=310.01 Aligned_cols=370 Identities=15% Similarity=0.092 Sum_probs=309.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHH
Q 004339 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 107 (760)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~a 107 (760)
....+...|..++..+|.++.+++.+|.++...|++.+|+.+|.+++..+|.++.+++.+|.++. .|++..|+..|.++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999998 88999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhh---hhcccchhhhhhhhhHHHHHHhHHhhhhhh
Q 004339 108 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT---LLDSKTKTYVIDASASMLQFKDMQLFHRFE 184 (760)
Q Consensus 108 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 184 (760)
+.+.|.. +.+++.+|.+|...|++++|+.+|.+++...|... .......
T Consensus 87 l~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~----------------------- 138 (450)
T 2y4t_A 87 IQLKMDF-----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI----------------------- 138 (450)
T ss_dssp HHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH-----------------------
T ss_pred HhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH-----------------------
Confidence 9999886 89999999999999999999999999998554221 0000000
Q ss_pred ccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 004339 185 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 264 (760)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 264 (760)
.......++.+|.++...|++++|+.+|.+++...|.++.++..+|.++...|++++|+.+|.+++..+|.+
T Consensus 139 --------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 139 --------KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 001122355668889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH------------HHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL------------GNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l------------g~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
+.++..+|.+|...|++++|+.+|.+++...|. ....+..+ |.+ +... |++++|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------g~~~~A 276 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE-LIRD------------GRYTDA 276 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH-HHHH------------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH-HHHc------------CCHHHH
Confidence 999999999999999999999999999999887 66665554 777 7777 999999
Q ss_pred HHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+.+|.+++...|.++. ++..+|.++...|++++|+.+|.+++...| .++.+|..+|.++...|++++|+..
T Consensus 277 ~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-----DNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999854 788899999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHH------------hc-----cHHHHHHHHHH-HHHhCCCC
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYE------------AE-----QWQDCKKSLLR-AIHLAPSN 455 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~------------~g-----~~~~A~~~~~~-al~~~p~~ 455 (760)
|++++.. .|.++.++..++.+... +| ...++...|++ ++...|++
T Consensus 352 ~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 352 YETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 9999996 67788899999866444 33 44556777775 67777765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=283.27 Aligned_cols=345 Identities=15% Similarity=0.092 Sum_probs=277.6
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
++..++.+|.+++..|+|++|+.+|++++..+|.++.+++.+|.++...|++++|+..|.+++.++|.++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888888888888888888888888777777777776
Q ss_pred c-cCCHhHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhh
Q 004339 93 I-SSDTGAALDAFKTARTLLK---KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 168 (760)
. .|+++.|+..|.+++.+.| .. ..++..++.++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~------------------------------------- 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEE-----KEAESQLVKADE------------------------------------- 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHH-----HHHHHHHHHHHH-------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccCh-----HHHHHHHHHHHH-------------------------------------
Confidence 6 6677777777777776666 44 455544444321
Q ss_pred hHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Q 004339 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 248 (760)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 248 (760)
...++.+|.++...|++++|+.+|.+++...|.++.++..+|.++...|+++
T Consensus 120 ----------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 120 ----------------------------MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171 (359)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH
Confidence 1234556778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 249 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 249 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|+.++.+++...|.++.++..+|.++...|++++|+..|.+++...|. ...++..+..+ .
T Consensus 172 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~-----------------~- 232 (359)
T 3ieg_A 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV-----------------K- 232 (359)
T ss_dssp HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-----------------H-
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-----------------H-
Confidence 8888888888888888888888888888888888888888888887776 44443333222 1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCch----HHHHHHHHHHHHcCCHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP----DVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----~~~~~la~~~~~~g~~~~ 404 (760)
.......+|.++...|++++|+.+|.+++...| .++ .++..+|.++...|++++
T Consensus 233 -----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 233 -----------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp -----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHHccCHHH
Confidence 123445678999999999999999999999998 544 457789999999999999
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 405 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 405 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
|+.+|++++.. .|.++.+++.+|.+|...|++++|+.+|++++.++|+++.++..++.++..+.
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999996 67789999999999999999999999999999999999999999998866554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=286.84 Aligned_cols=321 Identities=15% Similarity=0.172 Sum_probs=278.7
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---Cc
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP---RD 81 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~ 81 (760)
+++..+|.++.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++..+| .+
T Consensus 28 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 28 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 82 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 82 ~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
+.++..++.++. ...+..+|.++...|++++|+.+|.+++.
T Consensus 108 ~~~~~~l~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------- 148 (359)
T 3ieg_A 108 KEAESQLVKADE--------------------------MQRLRSQALDAFDGADYTAAITFLDKILE------------- 148 (359)
T ss_dssp HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Confidence 888888876642 35567789999999999999999999987
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
..|.++.++..+|.++...|++++|+..|.+++...|.++.++..+|.++
T Consensus 149 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 149 ------------------------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp ------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred ------------------------------hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcC
Q 004339 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
...|++++|+.+|.+++...|.++.++..+..+. .......+|.+ +...
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~a~~-~~~~------- 247 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-----------------------KLNKLIESAEE-LIRD------- 247 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------------------HHHHHHHHHHH-HHHT-------
T ss_pred HHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH-----------------------HHHHHHHHHHH-HHHc-------
Confidence 9999999999999999999999998766554432 12233445666 6666
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~ 397 (760)
|++++|+.+|.+++...|.++. ++..+|.++...|++++|+.+|.+++...| .++.+++.+|.++.
T Consensus 248 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 248 -----GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-----DNVNALKDRAEAYL 317 (359)
T ss_dssp -----TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHH
Confidence 8888888888888888888764 455688888888888888888888888887 77888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 398 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
..|++++|+..|++++.. .|.++.++..++.++..+++
T Consensus 318 ~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHH
Confidence 888888888888888886 67778888888877766554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=297.77 Aligned_cols=372 Identities=15% Similarity=0.060 Sum_probs=244.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI---------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID----- 78 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 78 (760)
.+..|..+|.++...|++++|+.+|++++.+ +|....+|.++|.+|..+|++++|+.+|++++.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3555677888888888888888888888775 56667788888888888888888888888887652
Q ss_pred ---CCcHHHHHHHHHHHc---cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcc
Q 004339 79 ---PRDAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALGD 149 (760)
Q Consensus 79 ---p~~~~~~~~la~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 149 (760)
+..+.++..+|.++. .++|++|+.+|++++.+.|++ +.++..+|.+++. .+++.+|+..|++++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-----~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~- 203 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-----PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR- 203 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-
Confidence 345667777776554 346888888888888888876 7777777777544 4666778888888876
Q ss_pred cchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004339 150 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILF 225 (760)
Q Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~ 225 (760)
.+|.++.++..+|..+.. .+++++|+.+|++++.
T Consensus 204 ------------------------------------------l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~ 241 (472)
T 4g1t_A 204 ------------------------------------------LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241 (472)
T ss_dssp ------------------------------------------HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred ------------------------------------------cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456667777777765554 3567788888888888
Q ss_pred HcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc-------------------CCHHHHHH
Q 004339 226 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN-------------------DDWVKAKE 286 (760)
Q Consensus 226 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~ 286 (760)
.+|....++..+|.+|...|++++|+..|.+++..+|+++.++..+|.+|... +.+..|+.
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888888888888888888888888888888888888888777543 23456666
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH-HHcCC
Q 004339 287 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY---AANGAGVVL-AEKGQ 362 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~-~~~g~ 362 (760)
+|.+++...|. ...++..+|.+ |... |++++|+.+|++++...|.+.. ++..+|.++ ...|+
T Consensus 322 ~~~~a~~~~~~-~~~~~~~lg~~-~~~~------------~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 322 HLKKADEANDN-LFRVCSILASL-HALA------------DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHCTT-TCCCHHHHHHH-HHHT------------TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhcCCc-hhhhhhhHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 66666666655 55556666666 6666 6666666666666666665433 234444433 35566
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHH
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 442 (760)
+++|+..|.+++.+.| ....... ....+..++.+++.. +|.++.++..||.+|...|++++|+
T Consensus 388 ~~~Ai~~y~kal~i~~-----~~~~~~~----------~~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 388 EDKAIHHFIEGVKINQ-----KSREKEK----------MKDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHHHHHHHHHHSCC-----CCHHHHH----------HHHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhcCc-----ccHHHHH----------HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665 3322111 122334455555554 6777889999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHhhHH
Q 004339 443 KSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~la 463 (760)
.+|++|+++.|.+|.+...+|
T Consensus 451 ~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ---------------------
T ss_pred HHHHHHHhcCCCCCcHhhcCC
Confidence 999999999998888877665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-30 Score=283.79 Aligned_cols=401 Identities=13% Similarity=0.042 Sum_probs=314.0
Q ss_pred CCHHHHHHHHHHHHHH----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHH
Q 004339 28 GDFRSALTNFEKVLEI----YP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKI---------DPRDAQAFIDLGELL 92 (760)
Q Consensus 28 g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~ 92 (760)
+.++.++..++..+.. .+ ..+.++..||.++..+|++++|+.+|++++.+ +|....+|.++|.+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 4455556666555532 22 23567889999999999999999999999876 577788999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEE---VPIEVLNNIGVIHFEK--GEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
. .|++.+|+.+|++++.+.+..... ..+.++..+|.++... ++|++|+.+|++++.
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~------------------ 166 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE------------------ 166 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH------------------
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH------------------
Confidence 8 899999999999999998876432 3578888888877665 579999999999998
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
.+|+++.++..++.++.. .+++.+|+..|.+++.++|.+..++..+|..+..
T Consensus 167 -------------------------~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 167 -------------------------KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp -------------------------HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred -------------------------hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 567888888888888654 5778899999999999999999999988877654
Q ss_pred ----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 004339 244 ----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 319 (760)
Q Consensus 244 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~ 319 (760)
.+++++|+.+|++++..+|.++.++..+|.+|...|++.+|+..|.+++...|. .+.++..+|.+ |........
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~-y~~~~~~~~ 299 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCC-YRAKVFQVM 299 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHH-HHHHHHHhh
Confidence 467889999999999999999999999999999999999999999999999998 89999999998 765433221
Q ss_pred cC-------chHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 004339 320 RA-------PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 392 (760)
Q Consensus 320 ~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l 392 (760)
.. .....+.++.|+..|.+++..+|.+..++..+|.++...|++++|+.+|++++.+.|... ....+++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~--~~~~~~~~~ 377 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV--AKQLLHLRY 377 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh--HHHHHHHHH
Confidence 11 112336688999999999999999999999999999999999999999999999887210 112356677
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 393 AHV-YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 393 a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
|.+ +...|++++|+..|.+++.. .|.... ..+....+..++.+++..+|.++.+++++|.+|...|
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~----------~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g- 444 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKI--NQKSRE----------KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE- 444 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHS--CCCCHH----------HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CcccHH----------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence 765 45789999999999999997 444432 2233445677889999999999999999999998887
Q ss_pred hHHhhhhcCHHHHHHHHHHHHHHHHHHH
Q 004339 472 STLQKTRRTADEVRSTVAELENAVRVFS 499 (760)
Q Consensus 472 ~~l~~~~~~l~~~~~a~~~l~~A~~~~~ 499 (760)
++..|+..|+.|+++-.
T Consensus 445 -----------~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 445 -----------KMQQADEDSERGLESGS 461 (472)
T ss_dssp -----------HCC--------------
T ss_pred -----------CHHHHHHHHHHHHhcCC
Confidence 66777777777776433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=265.26 Aligned_cols=289 Identities=14% Similarity=0.098 Sum_probs=194.6
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
+...|.++..++.+|..++..|+|++|+.+|++++..+|.+..++..++.++...|++++|+.+|.+++..+|.++.+++
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 44556677778888888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHHHHHc-cC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 87 DLGELLI-SS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 87 ~la~~~~-~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
.+|.++. .| +++.|+.+|.+++.+.|.. +.++..+|.++...|++++|+.+|.+++.
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------------- 153 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTY-----GPAWIAYGHSFAVESEHDQAMAAYFTAAQ---------------- 153 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-----THHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------
Confidence 7777766 66 6777777777777766664 56677777777777777777777777665
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 244 (760)
..|....+++.+|.++...|++++|+.+|.+++...|.++.++..+|.++...
T Consensus 154 ---------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 154 ---------------------------LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206 (330)
T ss_dssp ---------------------------HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred ---------------------------hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 33445556666777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHHc---------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHH
Q 004339 245 NNLQLSIELVNEALKVN---------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 315 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~ 315 (760)
|++++|+.++.+++... |..+.++..+|.++...|++++|+.+|.+++...|. ...++..+|.+ |...
T Consensus 207 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~-~~~~- 283 (330)
T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYI-HSLM- 283 (330)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH-HHHH-
T ss_pred ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-HHHh-
Confidence 77777777777766665 444455555555555555555555555555555554 45555555555 5555
Q ss_pred hhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 316 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 316 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
|++++|+.+|++++.++|+++.++..+|.++
T Consensus 284 -----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 284 -----------GNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp -----------TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5555555555555555555555555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=261.83 Aligned_cols=289 Identities=12% Similarity=0.123 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.++..+|..++..|++++|+.+|.+++. ..|.++.+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-------------------------------------------~~p~~~~~ 58 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVME-------------------------------------------KDPFHASC 58 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------------cCCCChhh
Confidence 57788999999999999999999999987 45677788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+..++.++...|++++|+.+|.+++..+|.++.+++.+|.++...| ++++|+.+|.+++..+|.++.++..+|.++...
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
|++++|+.+|.+++...|. ...++..+|.+ |... |+++.|+.+|++++..+|.++.++..+|.++.
T Consensus 139 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMKG-CHLPMLYIGLE-YGLT------------NNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204 (330)
T ss_dssp TCHHHHHHHHHHHHHHTTT-CSHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccc-cHHHHHHHHHH-HHHH------------hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999887 77888889999 8888 99999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCC----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSV----FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
..|++++|+.+|.+++...|... .+..+.++..+|.++...|++++|+.+|++++.. .|.++.++..+|.+|..
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHH
Confidence 99999999999999999975221 1356789999999999999999999999999997 67789999999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 435 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
+|++++|+.+|++++.++|+++.++..++.++.
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999874
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-27 Score=259.28 Aligned_cols=374 Identities=16% Similarity=0.110 Sum_probs=330.9
Q ss_pred CCCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCc
Q 004339 10 PHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRD 81 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 81 (760)
.+.++.+++.+|.+|+. .+++.+|+.+|++++.. .++.+++.||.+|.. .+++.+|+.+|++++.. .+
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 45678899999999999 99999999999999875 689999999999999 99999999999999875 58
Q ss_pred HHHHHHHHHHHcc-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccch
Q 004339 82 AQAFIDLGELLIS-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIW 152 (760)
Q Consensus 82 ~~~~~~la~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 152 (760)
+.+++.||.+|.. +++..|+.+|+++.... .+.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 8999999999874 48999999999997752 37899999999998 89999999999999762
Q ss_pred hhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcC
Q 004339 153 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p 228 (760)
.++.+++.+|.+|.. .+++++|+.+|.+++..
T Consensus 181 ------------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 216 (490)
T 2xm6_A 181 ------------------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-- 216 (490)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred ------------------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--
Confidence 367899999999998 89999999999999874
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh----cCCHHHHHHHHHHhhhcCCCCCh
Q 004339 229 DYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDGKDS 300 (760)
Q Consensus 229 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 300 (760)
.++.+++.+|.+|.. .+++++|+.+|.+++.. .++.+++.+|.+|.. .+++.+|+.+|++++... ++
T Consensus 217 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~ 291 (490)
T 2xm6_A 217 GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NS 291 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CH
Confidence 578899999999997 89999999999999875 678899999999998 899999999999998763 67
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHh
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG---QFDVSKDLFTQVQEAA 377 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 377 (760)
.+++.+|.+ |...... ..+++++|+.+|.+++.. .++.+++.+|.+|...| ++++|+.+|+++++.
T Consensus 292 ~a~~~Lg~~-y~~~~~g-------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 292 DGQYYLAHL-YDKGAEG-------VAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp HHHHHHHHH-HHHCBTT-------BCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHH-HHcCCCC-------CcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 888999988 6642110 016899999999999986 56889999999999877 899999999999986
Q ss_pred cCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHH
Q 004339 378 SGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAI 449 (760)
Q Consensus 378 p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 449 (760)
.++.+++++|.+|.. .+++++|+.+|++++.. .++.+++.||.+|.. .+++.+|+.+|++|+
T Consensus 361 ------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 361 ------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 358999999999999 89999999999999984 468999999999999 899999999999999
Q ss_pred HhCCC---ChhHHhhHHHHHH
Q 004339 450 HLAPS---NYTLRFDAGVAMQ 467 (760)
Q Consensus 450 ~~~p~---~~~~~~~la~~~~ 467 (760)
...|+ ++.+.++++.++.
T Consensus 431 ~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 431 TNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHCCHHHHHHHHHHHTTSCH
T ss_pred HCCCCCcCCHHHHHHHHhcCH
Confidence 99954 8888888877643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-27 Score=264.41 Aligned_cols=428 Identities=8% Similarity=0.038 Sum_probs=333.4
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
++|..+|.++.+|+.++.. ...|+++.|..+|++++..+|.++.+|..+|.++...|+++.|+.+|++++...| ++..
T Consensus 4 ~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~l 81 (530)
T 2ooe_A 4 KKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDL 81 (530)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHH
T ss_pred hHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHH
Confidence 5678899999999999984 7899999999999999999999999999999999999999999999999999999 6788
Q ss_pred HHHHHHHHc--cCCHhHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcc
Q 004339 85 FIDLGELLI--SSDTGAALD----AFKTARTLLKKAGEEVPIEVLNNIGVIHFE---------KGEFESAHQSFKDALGD 149 (760)
Q Consensus 85 ~~~la~~~~--~~~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~ 149 (760)
|..++.... .|++..|.. .|++++...+.+ +....+|..++.+... .|+++.|+.+|.+++..
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME--IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTS--TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCC--cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 998886443 567777665 777777654322 1237888888887765 78999999999999984
Q ss_pred cchhhhhcccchhhhhhh------hhHHHHHHhHHhhhhh----------hccCCCcc-CCcch-------HHHHHHHHH
Q 004339 150 GIWLTLLDSKTKTYVIDA------SASMLQFKDMQLFHRF----------ENDGNHVE-LPWNK-------VTVLFNLAR 205 (760)
Q Consensus 150 ~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l----------~~~~~~~~-~~p~~-------~~~~~~la~ 205 (760)
|.............+.. ....+......+..+. ..+...+. ..|.. ..+|.....
T Consensus 160 -P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 160 -PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp -CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 43211100000000000 0000000001111111 12222221 23321 234444433
Q ss_pred HHHHc----CCH----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HcC
Q 004339 206 LLEQI----HDT----VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNLQ-------LSIELVNEALK-VNG 262 (760)
Q Consensus 206 ~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p 262 (760)
..... ++. ..++..|++++..+|.++.+|+.+|.++.. .|+++ +|+.+|++++. ..|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 32221 232 478899999999999999999999999986 79977 99999999997 799
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 263 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
++..+|..++.++...|+++.|..+|.+++...|.....+|..++.+ +... |+++.|+.+|.+++..
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKARED 385 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998876224689999998 8888 9999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-
Q 004339 343 HTSNLYAANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT- 420 (760)
Q Consensus 343 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~- 420 (760)
.|.+...+...+.+ +...|+++.|+.+|+++++..| +++.+|..++.++...|+++.|..+|++++...+.++
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 99888877777766 3468999999999999999999 8899999999999999999999999999999744332
Q ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 421 -DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 421 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
...+|...+......|+.+.+..++.++++..|++
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 25588888888889999999999999999999954
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=267.11 Aligned_cols=237 Identities=17% Similarity=0.141 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHH------
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS------ 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------ 269 (760)
++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|.+..++.
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444444444444444444443333222
Q ss_pred ----------HHHHHHhhcCCHHHHHHHHHHhhhcCCCC-ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHH
Q 004339 270 ----------MLGDLELKNDDWVKAKETFRAASDATDGK-DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 338 (760)
Q Consensus 270 ----------~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 338 (760)
.++.++ ..|++.+|+.+|.+++...|.. .+.++..+|.+ |... |+++.|+.+|++
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~ 242 (368)
T 1fch_A 177 GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL-FNLS------------GEYDKAVDCFTA 242 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH-HHHT------------TCHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH-HHHc------------CCHHHHHHHHHH
Confidence 233333 5555555555555555555442 34555555555 5555 555555555555
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 339 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 339 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
++..+|.++.+++.+|.++...|++++|+.+|.+++.+.| .++.+++.+|.+|..+|++++|+.+|++++...+.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-----GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555555555555555555 45555555555555555555555555555555443
Q ss_pred CC---------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 419 NT---------DAQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 419 ~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
.. .+.++..+|.+|..+|++++|..++.+++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 31 1455556666666666666665555555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=260.41 Aligned_cols=297 Identities=14% Similarity=0.108 Sum_probs=253.7
Q ss_pred HHHHcCCHHHHHH-HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCc-chHHHHHHHHHH
Q 004339 129 IHFEKGEFESAHQ-SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW-NKVTVLFNLARL 206 (760)
Q Consensus 129 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~~la~~ 206 (760)
++...|+|++|+. .|.+++...| .+| .....++.+|.+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~----------------------------------------~~~~~~~~~~~~~~~~ 73 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEE----------------------------------------ENPLRDHPQPFEEGLR 73 (368)
T ss_dssp ------------CHHHHCCCCCCS----------------------------------------SCTTTTCSSHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCC----------------------------------------CCcccchHHHHHHHHH
Confidence 5666789999999 9988876432 122 235678999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++.+|+.
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChHHHH----------------HHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC--CHH
Q 004339 287 TFRAASDATDGKDSYATL----------------SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLY 348 (760)
Q Consensus 287 ~~~~al~~~~~~~~~~~~----------------~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~ 348 (760)
+|.+++...|. ....+. .++.+ + .. |+++.|+.+|.+++..+|. ++.
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~------------~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 154 ILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL-L-SD------------SLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHHHTSTT-TGGGCC---------------CTTHHH-H-HH------------HHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH-h-hc------------ccHHHHHHHHHHHHHhCcCcccHH
Confidence 99999998876 333332 35555 4 66 9999999999999999999 899
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 428 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 428 (760)
++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++.. .|.++.+++.+
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l 291 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNL 291 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 999999999999999999999999999998 78999999999999999999999999999997 67889999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCC-----------hhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHH
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSN-----------YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 497 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~ 497 (760)
|.+|...|++++|+.+|++++.+.|++ ..+|.+++.++..+| +...+...+..++..
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG------------QSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT------------CGGGHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC------------ChHhHHHhHHHHHHH
Confidence 999999999999999999999999988 899999999998887 334444444555555
Q ss_pred HH
Q 004339 498 FS 499 (760)
Q Consensus 498 ~~ 499 (760)
|.
T Consensus 360 ~~ 361 (368)
T 1fch_A 360 LL 361 (368)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-25 Score=245.55 Aligned_cols=350 Identities=17% Similarity=0.148 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcc-----CCHhHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALD 102 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~A~~ 102 (760)
.++..+.++.. +.++.+++.+|.+|.. .+++.+|+.+|++++.. .++.+++.||.+|.. +++..|+.
T Consensus 25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34666666654 6789999999999999 89999999999999986 678999999999874 58999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 103 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
+|.++.... .+.+++.||.+|.. .+++++|+.+|+++...
T Consensus 101 ~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------------------------- 144 (490)
T 2xm6_A 101 WYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------------------------- 144 (490)
T ss_dssp HHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------
Confidence 999998752 37899999999999 89999999999999752
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCCHHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLS 250 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A 250 (760)
.++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+|.. .+++++|
T Consensus 145 ----------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 145 ----------------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp ----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ----------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 467899999999998 89999999999999875 589999999999998 8999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhh----cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 251 IELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
+.+|.+++.. .++.+++.+|.+|.. .+++.+|+.+|.+++... ++.+++.+|.+ |..... ..
T Consensus 207 ~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-y~~g~~--------~~ 272 (490)
T 2xm6_A 207 AQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI-LEQGLA--------GA 272 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH-HHHTTT--------SS
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH-HHCCCC--------CC
Confidence 9999999875 578899999999997 889999999999998763 67889999999 876100 01
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG- 400 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g- 400 (760)
+++.+|+.+|++++.. .++.+++.+|.+|... +++++|+.+|.++++.. ++.+++++|.+|...|
T Consensus 273 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------DATAQANLGAIYFRLGS 343 (490)
T ss_dssp CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Confidence 8999999999999876 6789999999999988 99999999999999864 4889999999999977
Q ss_pred --CHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 401 --NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 401 --~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
++++|+.+|++++.. .++.+++.||.+|.. .+++++|+.+|++++... ++.++++||.+|..
T Consensus 344 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence 899999999999985 679999999999999 899999999999999864 68899999999865
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-26 Score=252.68 Aligned_cols=419 Identities=12% Similarity=0.086 Sum_probs=307.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 36 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 36 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
+|++++..+|.+..+|..++.. ...|++..|..+|++++..+|.++.+|..++.++. .|+++.|...|++++...|+
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~- 78 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH- 78 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Confidence 3788999999999999999985 78899999999999999999999999999999988 88999999999999999884
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCHHHHHH----HHHHHhcccchhhhhcccchhhhhhhhhHHHH-------HHhHHhhhh
Q 004339 115 GEEVPIEVLNNIGVI-HFEKGEFESAHQ----SFKDALGDGIWLTLLDSKTKTYVIDASASMLQ-------FKDMQLFHR 182 (760)
Q Consensus 115 ~~~~~~~~~~~la~~-~~~~g~~~~A~~----~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 182 (760)
..+|..++.. ....|+++.|.. .|++++...+.... .............. .....+..+
T Consensus 79 -----~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 79 -----IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM----SYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp -----HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT----CHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc----cHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 6788888854 456788887766 77777653211000 00000000000000 002233333
Q ss_pred hhccCCCccCCcchH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHH-----cCCc------
Q 004339 183 FENDGNHVELPWNKV--TVLFNLARLL-------------EQIHDTVAASVLYRL------ILFK-----YQDY------ 230 (760)
Q Consensus 183 l~~~~~~~~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------~l~~-----~p~~------ 230 (760)
...+...+. .|... ..+...+... ...+++..|...|.. .+.. .|..
T Consensus 150 ~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 150 RRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 344444444 34332 2332222211 134567777777665 3321 2221
Q ss_pred -HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHcCCChHHHHHHHHHHhh-------cCCHH-------HHHHH
Q 004339 231 -VDAYLRLAAIAKAR----NNL----QLSIELVNEALKVNGKYPNALSMLGDLELK-------NDDWV-------KAKET 287 (760)
Q Consensus 231 -~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~ 287 (760)
...|.......... ++. ..++..|++++..+|.++.+|+.+|.++.. .|+++ .|+.+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 23444444333221 222 478899999999999999999999999986 79987 99999
Q ss_pred HHHhhh-cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCChHH
Q 004339 288 FRAASD-ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-YAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 288 ~~~al~-~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~ 365 (760)
|.+++. ..|. ....|+.++.+ +... |+++.|..+|++++...|.++ .+|..+|.++...|+++.
T Consensus 309 ~~~Al~~~~p~-~~~l~~~~~~~-~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 309 YERAISTLLKK-NMLLYFAYADY-EESR------------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp HHHHTTTTCSS-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHH-HHhc------------CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 999997 6776 89999999999 8888 999999999999999999986 699999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHV-YFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 444 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 444 (760)
|+.+|.+++...| ....++...+.+ +...|+++.|..+|++++..+ |.++.++..++.++...|+++.|+.+
T Consensus 375 A~~~~~~Al~~~~-----~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 375 GRMIFKKAREDAR-----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHTCTT-----CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHhccC-----CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999877 556777776665 446999999999999999974 67799999999999999999999999
Q ss_pred HHHHHHhCCCChh----HHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHH
Q 004339 445 LLRAIHLAPSNYT----LRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 499 (760)
Q Consensus 445 ~~~al~~~p~~~~----~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~ 499 (760)
|++++...|.++. +|..........| +...+..-+..+.+.|+
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G------------~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIG------------DLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSS------------CHHHHHHHHHHHHHHTH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCc
Confidence 9999999887665 5555444443333 34444455555555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=254.57 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
...++.+|.+++..|++++|+.+|++++. ..|.++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~ 101 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL-------------------------------------------QDPGDAEA 101 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCcCCHHH
Confidence 34577888888888888888888888876 45667778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH---------
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM--------- 270 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------- 270 (760)
++.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.+|.+++...|.++.++..
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888887765554444
Q ss_pred -HHHHHhhcCCHHHHHHHHHHhhhcCCCC-ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 271 -LGDLELKNDDWVKAKETFRAASDATDGK-DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 271 -la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
+|.++...|++++|+.+|.+++...|.. ++.++..+|.+ |... |++++|+.+|++++..+|.++.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL-FHLS------------GEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHH
Confidence 3778888888888888888888877653 56777888888 7777 8888888888888888888888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-------
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD------- 421 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 421 (760)
+++.+|.+|...|++++|+.+|.+++...| .++.+++++|.+|..+|++++|+.+|++++...+....
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 323 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQP-----GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchh
Confidence 888888888888888888888888888887 67888888888888888888888888888887544222
Q ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004339 422 ---AQILLYLARTHYEAEQWQDCKKSLLRAI 449 (760)
Q Consensus 422 ---~~~~~~la~~~~~~g~~~~A~~~~~~al 449 (760)
..++..++.++..+|+.+.|..++.+.+
T Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 324 AISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ---CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 5677788888888888877777665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=247.93 Aligned_cols=259 Identities=9% Similarity=-0.020 Sum_probs=243.4
Q ss_pred CccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHcCCChHH
Q 004339 189 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNA 267 (760)
Q Consensus 189 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 267 (760)
.+..+|.+..+++.+|.++...|++++|+..|.+++.++|.+..+|+.+|.++...|+ +++|+.+|.+++.++|+++.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4568899999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 347 (760)
|+.+|.++...|++.+|+.+|.+++.+.|. +..+|+.+|.+ +... |++++|+.+|++++.++|.+.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999998 99999999999 9999 999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhcCC
Q 004339 348 YAANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 348 ~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~ 419 (760)
.+|+++|.++.. .|.+++| +.+|.+++.++| .++.+|+++|.++...| ++.+|+..+..+ . ..|
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p 306 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSH 306 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTC
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCC
Confidence 999999999999 6665888 599999999999 88999999999999988 699999999887 4 378
Q ss_pred CcHHHHHHHHHHHHHhc--------c-HHHHHHHHHHH-HHhCCCChhHHhhHHHHHHHH
Q 004339 420 TDAQILLYLARTHYEAE--------Q-WQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 420 ~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 469 (760)
.++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++.++...
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 88999999999999985 3 59999999999 999999999999998886543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-27 Score=249.56 Aligned_cols=273 Identities=15% Similarity=0.084 Sum_probs=239.3
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
..+..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|.++.++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
|. .|++.+|+.+|.+++.+.|...... ...++..+|.++...|++++|+.+|.+++.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------- 205 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH----------------- 205 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH-----------------
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----------------
Confidence 98 8899999999999999999863221 123445569999999999999999999998
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..|. ++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++..
T Consensus 206 --------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 206 --------------------------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp --------------------------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------------------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455 778999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-----------ChHHHHHHHHHHHH
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK-----------DSYATLSLGNWNYF 312 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~lg~~~y~ 312 (760)
.|++++|+.+|++++..+|+++.++..+|.+|...|++.+|+.+|.+++.+.|.. ...+|..++.+ +.
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 338 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA-LS 338 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH-HH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999999999999987642 25678889988 88
Q ss_pred HHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 313 AALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
.. |+.+.+..+..+.+
T Consensus 339 ~~------------g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 339 LM------------DQPELFQAANLGDL 354 (365)
T ss_dssp HH------------TCHHHHHHHHTTCC
T ss_pred Hc------------CcHHHHHHHHHhhH
Confidence 88 88888887766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=247.51 Aligned_cols=260 Identities=12% Similarity=0.021 Sum_probs=241.4
Q ss_pred hhhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcH
Q 004339 4 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 4 ~k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 82 (760)
+.+|..+|.++.+|+.+|.++...|++++|+.+|++++.++|.++.+|+.+|.++..+|+ +++|+.+|++++.++|+++
T Consensus 87 ~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp SSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred chhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 457788999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.+|+.+|.++. .|++.+|+..|++++.++|.+ ..+|+++|.++..+|++++|+.+|++++.
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-----~~a~~~lg~~~~~~g~~~eAl~~~~~al~------------- 228 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEFKLWDNELQYVDQLLK------------- 228 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-------------
Confidence 99999999998 899999999999999999997 89999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHcCCcHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ-IHDTVAA-----SVLYRLILFKYQDYVDAYL 235 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~~l~~~p~~~~~~~ 235 (760)
.+|.+..+|+++|.++.. .|.+++| +.+|.+++.++|++..+|+
T Consensus 229 ------------------------------l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~ 278 (382)
T 2h6f_A 229 ------------------------------EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 278 (382)
T ss_dssp ------------------------------HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ------------------------------hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 678899999999999999 5655777 5999999999999999999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC--------C-HHHHHHHHHHh-hhcCCCCChHHH
Q 004339 236 RLAAIAKARN--NLQLSIELVNEALKVNGKYPNALSMLGDLELKND--------D-WVKAKETFRAA-SDATDGKDSYAT 303 (760)
Q Consensus 236 ~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~ 303 (760)
.++.++...| ++.+|+..+.++ ..+|+++.++..+|.+|...| + +++|+.+|.++ +.+.|. ....|
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w 356 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYW 356 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHH
Confidence 9999999988 689999999998 889999999999999999874 3 59999999999 888887 77778
Q ss_pred HHHHHHHHHHH
Q 004339 304 LSLGNWNYFAA 314 (760)
Q Consensus 304 ~~lg~~~y~~~ 314 (760)
..++.. +...
T Consensus 357 ~~~~~~-l~~~ 366 (382)
T 2h6f_A 357 RYIGRS-LQSK 366 (382)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHHH
Confidence 777777 5444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=239.45 Aligned_cols=274 Identities=13% Similarity=0.081 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
...++.+|.++...|++++|+.+|.+++. ..|.++.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~ 57 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEA 57 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHH
Confidence 45678888999999999999999998887 45667888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH--------
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------- 271 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 271 (760)
++.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.+|.+++...|.+..++..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999888888777766
Q ss_pred ------HH-HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 272 ------GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 272 ------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
+. ++...|++.+|+.+|.+++...|. ...++..+|.+ |... |+++.|+.+|.+++..+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRP 203 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCC
Confidence 66 678888889999999988888877 78888888888 8887 889999999999998888
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC----
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 420 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 420 (760)
.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++...+...
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 8888888999999999999999999999988887 7788888999999999999999999998888743310
Q ss_pred ------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 421 ------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 421 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
++.++..+|.++..+|++++|..++++++...|.+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 57788888999999999999988888877766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-26 Score=237.05 Aligned_cols=273 Identities=12% Similarity=0.094 Sum_probs=245.8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+..++.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.+|.+++..+|.++.++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH--------------HH-HHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSL--------------GN-WNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l--------------g~-~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
+...|++.+|+.+|.+++...|. ....+..+ +. + +... |+++.|+.+|.++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFF-FAAP------------NEYRECRTLLHAA 164 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CC-TTSH------------HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHH-HHHc------------ccHHHHHHHHHHH
Confidence 99999999999999999998876 44444444 33 3 4444 9999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004339 340 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 340 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 419 (760)
+...|.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+..|++++.. .|
T Consensus 165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~ 237 (327)
T 3cv0_A 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDI--NP 237 (327)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 999999999999999999999999999999999999998 78999999999999999999999999999996 67
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------ChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHH
Q 004339 420 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS------------NYTLRFDAGVAMQKFSASTLQKTRRTADEVRST 487 (760)
Q Consensus 420 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a 487 (760)
.++.++..+|.+|...|++++|+.+|++++.+.|. ++.+++.++.++...+ +...|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A 305 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN------------RPDLV 305 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT------------CHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC------------CHHHH
Confidence 78999999999999999999999999999999999 7899999999988877 55666
Q ss_pred HHHHHHHHHHHHH
Q 004339 488 VAELENAVRVFSH 500 (760)
Q Consensus 488 ~~~l~~A~~~~~~ 500 (760)
...+..++..+..
T Consensus 306 ~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 306 ELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCCSHHHHH
T ss_pred HHHHHHHHHhcch
Confidence 6666666665554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=217.44 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=226.9
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------hHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNA 267 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 267 (760)
..+.+++.+|.++...|++++|+.+|.+++... .++.++..+|.++...|++++|+.++.+++...|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 457889999999999999999999999999999 899999999999999999999999999999999877 789
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 347 (760)
+..+|.++...|++++|+.+|.+++...|. +.+ +... |+++.|+..|.+++..+|.++
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~ 139 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKA 139 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchH
Confidence 999999999999999999999999998775 345 6666 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHH
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY 427 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 427 (760)
.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+.+|++++.. .|.++.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 212 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIR 212 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 9999999999999999999999999999998 78999999999999999999999999999996 6778999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhC------CCChhHHhhHHHH
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 465 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 465 (760)
+|.+|...|++++|+.+|++++.+. |.+..++..++.|
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999 8888888777665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=224.31 Aligned_cols=253 Identities=14% Similarity=0.092 Sum_probs=227.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh----HHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP----NALSML 271 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 271 (760)
++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++. .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999 44443 358999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
|.++...|++++|+.+|.+++...|. .+.++..+|.+ |... |+++.|+.+|++++..+|.++.++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSY-FYNK------------GNFPLAIQYMEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH-HHHT------------TCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHH-HHHc------------cCHHHHHHHHHHHhhcCCCcHHHHH
Confidence 99999999999999999999999988 88999999999 9998 9999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhcCCCc------H
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTD------A 422 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~------~ 422 (760)
.+|......+++++|+.+|.+++...| .++.+++.+|.++...|+ +++|+..|++++......++ .
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 999555556699999999999999999 789999999999999999 99999999999998632222 4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
.++..+|.+|...|++++|+.+|++++.++|+++.++-.++.+...
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 7899999999999999999999999999999999999888776543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=242.11 Aligned_cols=361 Identities=13% Similarity=0.037 Sum_probs=274.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI---EKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
...+|..++..|++++|+.+|+++... .++.+++.||.+|...|++ .+|+.+|++++.. ++.+++.+|.++.
T Consensus 6 ~~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 6 DQRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 367899999999999999999999875 5788899999999999998 9999999999966 7788999999544
Q ss_pred -cC-----CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 94 -SS-----DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 94 -~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
.+ ++.+|+.+|++++... + +.+++.||.+|...+....+...+......
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g--~-----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a------------------ 135 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG--E-----GNTLIPLAMLYLQYPHSFPNVNAQQQISQW------------------ 135 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT--C-----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHH------------------
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC--C-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH------------------
Confidence 44 6889999999998842 2 468999999999887665554443333221
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV----LYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~----~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..+.++.+++.+|.+|...+.++.+.. ++..+...+| .+++.||.+|..
T Consensus 136 ------------------------~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~ 188 (452)
T 3e4b_A 136 ------------------------QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQK 188 (452)
T ss_dssp ------------------------HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHH
T ss_pred ------------------------HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHH
Confidence 123457899999999999986555444 4554444444 499999999999
Q ss_pred cC---CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc----CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHh
Q 004339 244 RN---NLQLSIELVNEALKVNGKYPNALSMLGDLELKN----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 316 (760)
Q Consensus 244 ~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~ 316 (760)
.| ++.+|+.+|.++....|.....++.+|.+|... +++.+|+.+|.++. |. ++.+++.+|.+ |+...
T Consensus 189 ~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-~~~a~~~Lg~~-~~~~~- 262 (452)
T 3e4b_A 189 KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG-YPASWVSLAQL-LYDFP- 262 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-STHHHHHHHHH-HHHSG-
T ss_pred cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-CHHHHHHHHHH-HHhCC-
Confidence 99 999999999999999999999999999999766 79999999999998 44 88999999998 65321
Q ss_pred hhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHhcCCCCCCchHHHHH
Q 004339 317 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWIN 391 (760)
Q Consensus 317 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 391 (760)
..+++.+|+.+|+++... .++.+++.||.+|. .| ++.+|+.+|.++. | .++.++++
T Consensus 263 --------~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~-----g~~~A~~~ 323 (452)
T 3e4b_A 263 --------ELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G-----REVAADYY 323 (452)
T ss_dssp --------GGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T-----TCHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C-----CCHHHHHH
Confidence 128999999999999865 58999999999998 56 9999999999999 5 77999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 392 LAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 392 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
||.+|.. ..++.+|+.+|+++... .++.+.+.||.+|.. ..++.+|..+|.+|....+ +.+...++
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~ 397 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARN----GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLAT 397 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTT----TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhh----ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 9999987 44999999999999884 567889999999985 4689999999999998764 44555565
Q ss_pred HH
Q 004339 464 VA 465 (760)
Q Consensus 464 ~~ 465 (760)
.+
T Consensus 398 ~l 399 (452)
T 3e4b_A 398 QL 399 (452)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=234.96 Aligned_cols=282 Identities=18% Similarity=0.172 Sum_probs=229.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 80 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 80 (760)
+..+.+++.+|.+++..|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|.+++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44567889999999999999999999999999999984 68999999999999999999999999877 345
Q ss_pred cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 004339 81 DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 138 (760)
Q Consensus 81 ~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~--------------------~~~ 138 (760)
.+.++..+|.++. .|+++.|+.+|.+++.+.|...... ...++..+|.+|...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 5778999999988 8999999999999999988753221 25689999999999999 999
Q ss_pred HHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 004339 139 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 218 (760)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 218 (760)
|+.+|.+++...+. ....|....++..+|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~-------------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTA-------------------------------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHH-------------------------------------TTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHh-------------------------------------ccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999988763210 01234566789999999999999999999
Q ss_pred HHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHH
Q 004339 219 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 286 (760)
Q Consensus 219 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 286 (760)
+|.+++...|.. ..++..+|.++...|++++|+.+|.+++.+.|.. ..++..+|.++...|++++|+.
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876543 3388999999999999999999999999887765 6688899999999999999999
Q ss_pred HHHHhhhcCCCCC-----hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 287 TFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 287 ~~~~al~~~~~~~-----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
+|.+++...+... ..++..+|.+ |... |++++|+.+|++++.+
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNA-YTAL------------GNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHH
Confidence 9999887644311 3344444554 4444 5555555555555444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=212.12 Aligned_cols=209 Identities=20% Similarity=0.131 Sum_probs=131.3
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
++. .+. .. +..+...|++++|+..|.+++.
T Consensus 82 ~~~~~~~----------------~~------------~~~~~~~g~~~~A~~~~~~al~--------------------- 112 (217)
T 2pl2_A 82 AYVALYR----------------QA------------EDRERGKGYLEQALSVLKDAER--------------------- 112 (217)
T ss_dssp HHHHHHH----------------TC------------SSHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHhhh----------------hh------------hhhcccccCHHHHHHHHHHHHH---------------------
Confidence 776 400 00 0011122555555555555554
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.+|.++.+++.+|.++...|++++|+..|++++.++ .++.+++.+|.++...|++++
T Consensus 113 ----------------------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 113 ----------------------VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp ----------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred ----------------------hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence 344455555555555555555555555555555555 555555555555555555555
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (760)
|+..|++++..+|+++.++..+|.++...|++++|+..|.++
T Consensus 170 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 170 ALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-23 Score=210.82 Aligned_cols=260 Identities=11% Similarity=0.031 Sum_probs=230.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHHHHHHH
Q 004339 128 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARL 206 (760)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~ 206 (760)
...+..|+|..|+..++++.. .+|.+ ....+.++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~-------------------------------------------~~p~~~~e~~~~l~r~ 43 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP-------------------------------------------SSPERDVERDVFLYRA 43 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC-------------------------------------------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------------------------------------CCchhhHHHHHHHHHH
Confidence 456779999999999988755 44555 4577889999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cCCChHHHHHHHHHHhhcCCHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NGKYPNALSMLGDLELKNDDWVKA 284 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A 284 (760)
|...|+++.|+..++. ..|....++..++.++...+++++|+..+++++.. +|+++.+++.+|.++...|++++|
T Consensus 44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999998866 26667788899999999999999999999999876 699999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCC
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG--VVLAEKGQ 362 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~ 362 (760)
+.+|.+ |. +..++..+|.+ |... |+++.|+..|++++..+|++.......+ .++...|+
T Consensus 121 l~~l~~-----~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 121 LRTLHQ-----GD-SLECMAMTVQI-LLKL------------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHTT-----CC-SHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHhC-----CC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 999987 44 78899999999 9998 9999999999999999999876555444 33445689
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHH-H
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD-C 441 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~-A 441 (760)
+++|+.+|++++...| .++.+++++|.++..+|++++|+..|++++.. .|.++.+++++|.++...|++.+ +
T Consensus 182 ~~eA~~~~~~~l~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCS-----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999998 88999999999999999999999999999997 78899999999999999999976 5
Q ss_pred HHHHHHHHHhCCCChhHH
Q 004339 442 KKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 442 ~~~~~~al~~~p~~~~~~ 459 (760)
..++++++.++|+++.+.
T Consensus 255 ~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 255 NRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCChHHH
Confidence 789999999999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=230.59 Aligned_cols=308 Identities=18% Similarity=0.156 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCC-C
Q 004339 45 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA----QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEE-V 118 (760)
Q Consensus 45 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~-~ 118 (760)
+....+++.+|.++...|++++|+.+|++++.+.|.++ .++..+|.++. .|++..|+.+|.+++.+.+..... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34577899999999999999999999999999999884 57889999988 889999999999999986543211 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
...++..+|.+|...|++++|+.+|.+++...+... ..+..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~ 128 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-------------------------------------DKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------------------------------cccchHH
Confidence 367899999999999999999999999987533110 1223466
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 199 VLFNLARLLEQIHD--------------------TVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 199 ~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
++..+|.+|...|+ ++.|+.+|.+++.. .|....++..+|.++...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 89999999999999 99999999999876 34456678899999999999999999
Q ss_pred HHHHHHHHcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC-----hHHHHHHHHHHHHHHHhhhhcC
Q 004339 253 LVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRA 321 (760)
Q Consensus 253 ~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~lg~~~y~~~~~~~~~~ 321 (760)
++.+++.+.|.... ++..+|.++...|++++|+.+|.+++...+... ..++..+|.+ |...
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~------- 280 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT-YTLL------- 280 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHT-------
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH-HHHh-------
Confidence 99999987665433 777888888888888888888888877654311 3455556666 5555
Q ss_pred chHHhhcHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC-CCCCchHHHHHHHH
Q 004339 322 PKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAH 394 (760)
Q Consensus 322 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~la~ 394 (760)
|++++|+.+|.+++...+.. ..++..+|.+|...|++++|+.+|.+++.+.+.. ..+....++..+|.
T Consensus 281 -----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 355 (406)
T 3sf4_A 281 -----QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355 (406)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 66666666666666553332 4455666666666666666666666666654311 00122445555566
Q ss_pred HHHHcCCH
Q 004339 395 VYFAQGNF 402 (760)
Q Consensus 395 ~~~~~g~~ 402 (760)
++...|+.
T Consensus 356 ~~~~~g~~ 363 (406)
T 3sf4_A 356 LQMVLGLS 363 (406)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhHh
Confidence 65555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=211.76 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=214.3
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-------AQA 84 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 84 (760)
..+..++.+|.+++..|+|++|+.+|++++..+ .++.+++.+|.++...|++++|+.+|.+++.+.|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 456789999999999999999999999999999 899999999999999999999999999999998876 789
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+..+|.++. .|+++.|+.+|.+++.+.|. +.++...|++++|+..+.+++.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~--------------- 133 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------ADILTKLRNAEKELKKAEAEAY--------------- 133 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------hHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 999999998 88999999999999998765 3457777889999999999987
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..|..+.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++..
T Consensus 134 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 134 ----------------------------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185 (258)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------------------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 295 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (760)
.|++++|+.+|.+++..+|.++.++..+|.++...|++.+|+.+|.+++...
T Consensus 186 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999987
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=212.47 Aligned_cols=257 Identities=12% Similarity=0.065 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+.+++.+|.+++..|++++|+.+|.+++. ..|.++.+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------------------------------------------~~p~~~~~ 39 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA-------------------------------------------KKYNSPYI 39 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------------------------------TTCCCSTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------------------hCCCcHHH
Confidence 56789999999999999999999999997 56677889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
++.+|.++...|++++|+.+|.+++. .|.+ ..++..+|.++...|++++|+.+|.+++..+|.++.++..+|.+|
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999998 4433 456999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
...|++++|+.+|.+++...|. .+.+++.+|.. .+.. ++++.|+.+|.+++..+|.++.++..+|.
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQA-YYYN------------KEYVKADSSFVKVLELKPNIYIGYLWRAR 184 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 9999999999999999999887 89999999944 4444 79999999999999999999999999999
Q ss_pred HHHHcCC---hHHHHHHHHHHHHHh---cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 356 VLAEKGQ---FDVSKDLFTQVQEAA---SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 356 ~~~~~g~---~~~A~~~~~~al~~~---p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
++...|+ +++|+..|.+++... |.........++..+|.+|...|++++|+.+|++++.. .|.++.++-.++
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~ 262 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhh
Confidence 9999999 999999999999987 31000012478999999999999999999999999997 788888888887
Q ss_pred HHHHHhc
Q 004339 430 RTHYEAE 436 (760)
Q Consensus 430 ~~~~~~g 436 (760)
.+....+
T Consensus 263 ~~~~~~~ 269 (272)
T 3u4t_A 263 MKLEHHH 269 (272)
T ss_dssp -------
T ss_pred hhhcccc
Confidence 7765543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-23 Score=210.49 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=215.5
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhh
Q 004339 86 IDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 165 (760)
Q Consensus 86 ~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 165 (760)
+.+-..+..|+|..|+..++++....|.. .......++.+|..+|+++.|+..++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~p~~----~~e~~~~l~r~yi~~g~~~~al~~~~~-------------------- 59 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSSPER----DVERDVFLYRAYLAQRKYGVVLDEIKP-------------------- 59 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCSHHH----HHHHHHHHHHHHHHTTCHHHHHHHSCT--------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCchh----hHHHHHHHHHHHHHCCCHHHHHHHhcc--------------------
Confidence 34444556777777777777766666654 145667778888888888888875532
Q ss_pred hhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHH
Q 004339 166 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~ 243 (760)
..|....++..++..+...++++.|+..|++++.. +|+++.+++.+|.++..
T Consensus 60 --------------------------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 60 --------------------------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp --------------------------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred --------------------------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 12345677778888888888888888888888865 58888888888888888
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH-HHHHHhhhhcCc
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN-YFAALRNEKRAP 322 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~-y~~~~~~~~~~~ 322 (760)
.|++++|+.+|.+ |.++.++..+|.++...|++++|+..|++++...|. .....+..+.+. +...
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~-------- 179 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED-ATLTQLATAWVSLAAGG-------- 179 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCT--------
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCc--------
Confidence 8888888888877 788888888888888888888888888888888765 433332222220 2222
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
|++++|+.+|++++..+|.++.+++++|.++...|++++|+.+|.+++...| +++.++.++|.++...|++
T Consensus 180 ----~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 180 ----EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-----GHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp ----THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCC
T ss_pred ----hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999999999999999999999999999998 8899999999999999998
Q ss_pred HH-HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 403 AL-AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 403 ~~-A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
.+ +..++++++.. .|.++.+.- +..+.+.|++|..-|
T Consensus 251 ~eaa~~~~~~~~~~--~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 251 PEVTNRYLSQLKDA--HRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHH----HHHHHHHHHHHHHHc
Confidence 76 56788888886 666666543 446666676666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=206.73 Aligned_cols=199 Identities=14% Similarity=0.069 Sum_probs=146.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
|.++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc-----------CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 274 LELKN-----------DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 274 ~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
++... |++++|+..|.+++...|. ++.+++.+|.+ |... |++++|+..|++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLV-YALL------------GERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhc
Confidence 99988 6666666666666666665 56666666666 6665 6666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
+ .++.+++.+|.+|...|++++|+..|++++...| .++.+++++|.++...|++++|+..|+++
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-----KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTC--------------
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6 6666666666666666666666666666666666 55666666666666666666666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=227.02 Aligned_cols=357 Identities=12% Similarity=0.084 Sum_probs=267.6
Q ss_pred CCCchhhhhHHHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCcH
Q 004339 11 HEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHIYVQLG-----QIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~ 82 (760)
+.++.+++.+|.+|+..|++ .+|+.+|++++.. ++.+++.+|.++...+ ++.+|+.+|++++.. .++
T Consensus 32 ~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~ 106 (452)
T 3e4b_A 32 LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEG 106 (452)
T ss_dssp HTCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCS
T ss_pred CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCH
Confidence 46788999999999999999 9999999999966 7889999999777766 889999999999985 455
Q ss_pred HHHHHHHHHHccC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 83 QAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 83 ~~~~~la~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
.+++.||.+|..+ .+..+...+.......+.. .+.+++.+|.+|...+.++.++.........
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~------------ 170 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDVERICKA------------ 170 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH------------
Confidence 5899999999843 4444444444444444333 2689999999999999776666654333221
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH---DTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
....++.+++.+|.+|...| ++.+|+.+|.++....|.....++.+|
T Consensus 171 ------------------------------a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg 220 (452)
T 3e4b_A 171 ------------------------------ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA 220 (452)
T ss_dssp ------------------------------HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ------------------------------HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11124459999999999999 999999999999999999999889999
Q ss_pred HHHHHc----CCHHHHHHHHHHHHHHcCCChHHHHHHHHH-H--hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHH
Q 004339 239 AIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNY 311 (760)
Q Consensus 239 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y 311 (760)
.+|... +++.+|+.+|+++. |.++.+++.+|.+ + ...+++.+|+.+|.++.... ++.+++.||.+ |
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y 293 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL-Y 293 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-H
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH-H
Confidence 999766 79999999999998 8999999999998 5 57899999999999999754 78899999999 7
Q ss_pred HHHHhhhhcCchHHhh-----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcCCCC
Q 004339 312 FAALRNEKRAPKLEAT-----HLEKAKELYTRVIVQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVF 382 (760)
Q Consensus 312 ~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 382 (760)
. . | ++.+|+.+|+++. |.++.++++||.+|.. ..++.+|+.+|.++.+.
T Consensus 294 ~-~------------G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------ 351 (452)
T 3e4b_A 294 Y-E------------GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN------ 351 (452)
T ss_dssp H-H------------CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT------
T ss_pred H-c------------CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh------
Confidence 7 4 5 9999999999998 8999999999999986 44999999999999874
Q ss_pred CCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhC
Q 004339 383 VQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE--AEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 383 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 452 (760)
.++.+.++||.+|.. ..++.+|+.+|.++... .++.+...++.+... .++..+|...+++.....
T Consensus 352 -g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 352 -GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp -TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 458899999999985 45999999999999985 445666666666433 446666777776665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=223.67 Aligned_cols=285 Identities=18% Similarity=0.110 Sum_probs=244.1
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 80 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 80 (760)
|..+..++.+|..++..|++++|+.+|++++...|.++ .+++.+|.+|...|++++|+.+|++++.+ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34556788999999999999999999999999999986 58999999999999999999999999988 577
Q ss_pred cHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 004339 81 DAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGE-----------------FESAHQ 141 (760)
Q Consensus 81 ~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~-----------------~~~A~~ 141 (760)
...++..+|.+|. .|++..|+.+|.+++.+.+.... +....++..+|.+|...|+ ++.|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7889999999998 89999999999999999544321 1126789999999999999 899999
Q ss_pred HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 142 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 142 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
+|.+++.+.+.. ...+....++..+|.++...|++++|+.+|.
T Consensus 205 ~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 205 FYQENLKLMRDL-------------------------------------GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHH-------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHc-------------------------------------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 888887632100 1234566799999999999999999999999
Q ss_pred HHHHHcCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 222 LILFKYQDYV------DAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 222 ~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
+++...|... .++..+|.++...|++++|+.+|.+++...+.. ..++..+|.++...|++++|+.+|.
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998876433 388999999999999999999999999987754 5688999999999999999999999
Q ss_pred HhhhcCCCC-----ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 290 AASDATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 290 ~al~~~~~~-----~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+++...+.. ...++..+|.+ |... |++++|+.+|++++.+.+.
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNA-HSAI------------GGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHHHhh
Confidence 999875431 24577888998 8888 9999999999999998764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=223.42 Aligned_cols=282 Identities=16% Similarity=0.073 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCc-chHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW-NKVT 198 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~ 198 (760)
...++.+|..++..|++++|+.+|++++...| .++ ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------~~~~~~~~ 87 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT----------------------------------------EDLRTLSA 87 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----------------------------------------SCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc----------------------------------------cChhHHHH
Confidence 56778899999999999999999999998432 111 1236
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCChH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGKYPN 266 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 266 (760)
+++.+|.+|...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.+|.+++.. .|....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 8999999999999999999999999987 5777889999999999999999999999999988 455667
Q ss_pred HHHHHHHHHhhcCC-----------------HHHHHHHHHHhhhcCC-----CCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 267 ALSMLGDLELKNDD-----------------WVKAKETFRAASDATD-----GKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 267 ~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~~-----~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
++..+|.+|...|+ ++.|+.+|.+++.+.+ .....++..+|.+ |...
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~---------- 236 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL---------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT----------
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc----------
Confidence 99999999999999 9999999999887542 1134578889999 8888
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNL------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYF 397 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~ 397 (760)
|+++.|+.+|.+++.+.|... .++..+|.+|...|++++|+.+|.+++...|... ......++..+|.+|.
T Consensus 237 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 237 --GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999876432 3889999999999999999999999999987211 1122678999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 398 AQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..|++++|+.+|++++...+...+ ..++..+|.+|..+|++++|+.+|++++.+.+.
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999997644333 678999999999999999999999999999864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-23 Score=213.39 Aligned_cols=284 Identities=13% Similarity=0.051 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
...++..|..++..|++++|+.+|++++...|. ..+....+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 45 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------------------------DLKTLSAI 45 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc---------------------------------------cHHHHHHH
Confidence 456788999999999999999999999984321 01112568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNA 267 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 267 (760)
+..+|.++...|+++.|+.+|.+++.. .|....++..+|.++...|++++|+.++.+++...|.. ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 899999999999999999999999877 45567789999999999999999999999999886644 338
Q ss_pred HHHHHHHHhhcCC--------------------HHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 268 LSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 268 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
+..+|.++...|+ +..|+.++.+++...+. ....++..+|.+ |...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~-------- 196 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL-------- 196 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH--------
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh--------
Confidence 8899999999999 99999999998875321 134577888998 8888
Q ss_pred hHHhhcHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHH
Q 004339 323 KLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHV 395 (760)
Q Consensus 323 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~ 395 (760)
|+++.|+.+|.+++...|.. ..++..+|.++...|++++|+.+|.+++.+.|... .+..+.++..+|.+
T Consensus 197 ----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 197 ----GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999999999875532 33899999999999999999999999999877211 11226789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 396 YFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
+...|++++|+.+|++++...+...+ ..++..+|.+|...|++++|+.+|++++.+.+..
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987644333 6688899999999999999999999999988753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-23 Score=213.28 Aligned_cols=282 Identities=18% Similarity=0.178 Sum_probs=239.3
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQ 83 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 83 (760)
...++..|..++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|+.+|.+++.+ .|..+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4568899999999999999999999999999998 478889999999999999999999999887 455677
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FESAHQ 141 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~--------------------~~~A~~ 141 (760)
++..+|.++. .|++..|+..|.+++.+.+..+... ...++..+|.+|...|+ ++.|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 8999999988 8899999999999999988753211 24588999999999999 899999
Q ss_pred HHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 142 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 221 (760)
Q Consensus 142 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (760)
+|.+++...+. ....+....++..+|.++...|++++|+.+|.
T Consensus 165 ~~~~a~~~~~~-------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (338)
T 3ro2_A 165 LYEENLSLVTA-------------------------------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207 (338)
T ss_dssp HHHHHHHHHHH-------------------------------------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-------------------------------------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99888763210 01234456789999999999999999999999
Q ss_pred HHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 222 LILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 222 ~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
+++...+.. ..++..+|.++...|++++|+.++.+++...+.. ..++..+|.++...|++++|+.+|.
T Consensus 208 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 208 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999876432 3489999999999999999999999999887655 6688999999999999999999999
Q ss_pred HhhhcCCCC-----ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 290 AASDATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 290 ~al~~~~~~-----~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
+++...+.. ...++..+|.+ |... |++++|+.+|++++.+.+.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNA-YTAL------------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHHHHh
Confidence 999865431 24577889999 9888 9999999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=199.68 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=181.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+..++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHH
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 171 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 171 (760)
. .|+++.|+..|.+++...|.. ..++..+|.++...|++++|+.+|.+++.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------------- 153 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVKLEQPKLALPYLQRAVE----------------------- 153 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCS-----HHHHHHHHHHHHHTSCHHHHHHHHHHHHH-----------------------
T ss_pred HHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHH-----------------------
Confidence 8 889999999999999998876 78999999999999999999999999987
Q ss_pred HHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Q 004339 172 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 251 (760)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 251 (760)
..|.++.+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+
T Consensus 154 --------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 154 --------------------LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred --------------------hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 456677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 252 ELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 252 ~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
.+|.+++..+|+++.++..++.+....+
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999998887765544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-21 Score=194.06 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=214.8
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
.|.++.+++.+|.++...|++++|+.+|.+++. |.++.+++.+|.++.. .+++++|+.+|.+++... ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467889999999999999999999999999998 7889999999999999 999999999999999875 89999
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHH----HHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 269 SMLGDLELK----NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA----ALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 269 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~----~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
+.+|.+|.. .+++.+|+.+|.+++... ++.+++.+|.+ |.. . +++++|+.+|++++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-~~~~~~~~------------~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI-YHDGKVVT------------RDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCSSSC------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH-HHcCCCcc------------cCHHHHHHHHHHHH
Confidence 999999999 999999999999999873 78899999999 887 7 99999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004339 341 VQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNC 412 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 412 (760)
... ++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 976 68899999999998 999999999999999874 48899999999999 99999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
+.. .++.+++.+|.+|.. .+++++|+.+|++++.+.|.+...+
T Consensus 213 ~~~----~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 213 CEL----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHT----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HhC----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 996 338899999999999 9999999999999999998764443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-21 Score=187.44 Aligned_cols=217 Identities=22% Similarity=0.151 Sum_probs=169.6
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.+|.++.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778888899999999999999999999999999999899999999999999999999999999998888888888888
Q ss_pred HHHHc-c-CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 89 GELLI-S-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 89 a~~~~-~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
|.++. . |++..|+.+|.+++. .|.. +....+++.+|.++...|++++|+.+|.+++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------ 141 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTY--PTPYIANLNKGICSAKQGQFGLAEAYLKRSLA------------------ 141 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTC--SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 88777 7 778888888887777 2211 11256777777777777777777777777766
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN 245 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g 245 (760)
..|.++.+++.+|.++...|++++|+.+|.+++...| .+..++..++.++...|
T Consensus 142 -------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 142 -------------------------AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp -------------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred -------------------------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 3455667777777777777777777777777777777 77777777777777777
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 246 NLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
+++.|..++..++..+|+++.+...+
T Consensus 197 ~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 77777777777777777777665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=194.97 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=212.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
++..+...|++++|+..|.+++...+ ..+|..+.+++.+|.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~l~~ 51 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRA---------------------------------------LTDDERAQLLYERGV 51 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSC---------------------------------------CCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhccc---------------------------------------ccCchhHHHHHHHHH
Confidence 34445556889999999999987321 124567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.+|.+++...|. .......++ + +... |+++.|+.+|.+++...|.+...+. ++.++...+++.+
T Consensus 132 ~~~~~a~~~~~~-~~~~~~~~~-~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 132 DDLLAFYQDDPN-DPFRSLWLY-L-AEQK------------LDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHH-H-HHHH------------HCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHH-H-HHHh------------cCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 999999999887 554443333 3 4455 8999999999999999998876654 7777788888899
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 366 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 366 A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
|+..+.+++...|.. .+.++.+++.+|.+|...|++++|+.+|++++.. .|.+ +...+.++..+|++.+|+..|
T Consensus 196 a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccc-cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh---HHHHHHHHHHHHHHHhhHHHH
Confidence 999999988776510 0123688999999999999999999999999986 3444 233477888999999998887
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=192.16 Aligned_cols=220 Identities=16% Similarity=0.137 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHH
Q 004339 119 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 198 (760)
Q Consensus 119 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 198 (760)
.+..++.+|.++...|+++.|+.+|.+++. ..|.++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------------------------------------------~~~~~~~ 58 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-------------------------------------------ENKEDAI 58 (243)
T ss_dssp --------------------CCTTHHHHHT-------------------------------------------TCTTCHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-------------------------------------------hCcccHH
Confidence 367788888899999999999999988887 5566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+.+|.+++...|.++.++..+|.++...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 88889999999999999999999999888888888899999999999999999999999998888888888899998889
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (760)
|++++|+.+|.+++...|. ...++..+|.+ |... |+++.|+.+|.+++...|.++.++..+|.++.
T Consensus 139 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELNEN-DTEARFQFGMC-LANE------------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204 (243)
T ss_dssp SCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCc-cHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 9999999999888888776 77888888888 8888 88888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 400 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g 400 (760)
..|++++|+.+|.+++...| +++.++..++.+....+
T Consensus 205 ~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 205 YKENREKALEMLDKAIDIQP-----DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HTTCTTHHHHHHHHHHHHCT-----TCHHHHHHHTC------
T ss_pred HccCHHHHHHHHHHHHccCc-----chHHHHHHHHHHHhhcc
Confidence 88888888888888888888 77888887776665443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-21 Score=192.35 Aligned_cols=213 Identities=22% Similarity=0.225 Sum_probs=134.3
Q ss_pred CCCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 9 KPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 9 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
.+|.. +.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34444 56667777777777777777777777777777777777777777777777777777777777776666666666
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHH--HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTART--LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
+|.++. .|++++|+.+|.+++. ..|.. ..++..+|.++...|++++|+.+|.+++.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------------- 169 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPER-----SRVFENLGLVSLQMKKPAQAKEYFEKSLR---------------- 169 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------
Confidence 666655 5566666666666655 33332 45566666666666666666666666654
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 244 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 244 (760)
..|.++.+++.+|.++...|++++|+.+|.+++...|.+..++..++.++...
T Consensus 170 ---------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (252)
T 2ho1_A 170 ---------------------------LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF 222 (252)
T ss_dssp ---------------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred ---------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 23444555666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHHcCCChHHHH
Q 004339 245 NNLQLSIELVNEALKVNGKYPNALS 269 (760)
Q Consensus 245 g~~~~A~~~~~~al~~~p~~~~~~~ 269 (760)
|++++|..++.+++..+|+++.+..
T Consensus 223 g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 223 EDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 6666666666666666666555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=201.65 Aligned_cols=255 Identities=18% Similarity=0.076 Sum_probs=214.6
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
...+.++..+...|++++|+..|++++... |.++.+++.+|.++...|++++|+.+|++++.++|.++.++..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 85 (275)
T 1xnf_A 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85 (275)
T ss_dssp -CGGGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred ccCcceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 345556666677799999999999999874 4568899999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
++. .|+++.|+.+|.+++.+.|.. +.+++.+|.+|...|++++|+.+|.+++..
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------------------- 140 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------------------- 140 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHccCHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------
Confidence 998 889999999999999999886 799999999999999999999999999883
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
.|.+......++. +...|++++|+..|.+++...|.....+. ++.++...++..+
T Consensus 141 -----------------------~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 141 -----------------------DPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp -----------------------CTTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred -----------------------CCCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 4455544544443 36669999999999999999988766554 7778888999999
Q ss_pred HHHHHHHHHHHcCC----ChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHH
Q 004339 250 SIELVNEALKVNGK----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 325 (760)
Q Consensus 250 A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~ 325 (760)
|+..+.+++...|. ++.++..+|.++...|++++|+.+|.+++...|.. .. ..+.+ +...
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~---~~~~~-~~~l----------- 259 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FV---EHRYA-LLEL----------- 259 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CH---HHHHH-HHHH-----------
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HH---HHHHH-HHHH-----------
Confidence 99999999877664 36799999999999999999999999999998863 22 23445 6666
Q ss_pred hhcHHHHHHHH
Q 004339 326 ATHLEKAKELY 336 (760)
Q Consensus 326 ~~~~~~A~~~~ 336 (760)
|++.+|+..|
T Consensus 260 -~~~~~a~~~~ 269 (275)
T 1xnf_A 260 -SLLGQDQDDL 269 (275)
T ss_dssp -HHHHHC----
T ss_pred -HHHHhhHHHH
Confidence 8999998887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-20 Score=186.85 Aligned_cols=228 Identities=21% Similarity=0.198 Sum_probs=208.7
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
+|.++.+++.+|.+++..|++++|+.+|++++. |.++.+++.+|.+|.. .+++++|+.+|++++..+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 8889999999999999 999999999999999885 89999
Q ss_pred HHHHHHHc-----cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccchhhhh
Q 004339 86 IDLGELLI-----SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 86 ~~la~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
+.+|.+|. .+++.+|+.+|++++... .+.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------- 143 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------- 143 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------
Confidence 99999987 469999999999999873 27999999999999 99999999999999863
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVD 232 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~ 232 (760)
.++.+++.+|.+|.. .+++++|+.+|++++.. .++.
T Consensus 144 --------------------------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 183 (273)
T 1ouv_A 144 --------------------------------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSP 183 (273)
T ss_dssp --------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred --------------------------------------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 256789999999999 99999999999999986 4688
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh----cCCHHHHHHHHHHhhhcCCC
Q 004339 233 AYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 233 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 297 (760)
+++.+|.+|.. .+++++|+.+|++++...| +.+++.+|.+|.. .+++++|+.+|.+++...|.
T Consensus 184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999 9999999999999999865 8899999999999 99999999999999998765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=188.18 Aligned_cols=216 Identities=17% Similarity=0.135 Sum_probs=144.3
Q ss_pred CCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 192 LPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 192 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
.+|.. +.+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+.+|.+++...|.++.++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34444 56677777777777777777777777777777777777777777777777777777777777766666666666
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHH
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 350 (760)
+|.++...|++++|+.+|.+++. .+ ..|.+..++
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~-~~---------------------------------------------~~~~~~~~~ 144 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ-DT---------------------------------------------LYPERSRVF 144 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT-CT---------------------------------------------TCTTHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh-Cc---------------------------------------------cCcccHHHH
Confidence 66666666666666666655555 00 334455556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+.+|++++.. .|.+..++..++.
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 217 (252)
T 2ho1_A 145 ENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIR 217 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 6666666666777777777777766666 55666777777777777777777777777664 4455666777777
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
++...|++++|..++++++.+.|+++.++.
T Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 218 LAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 777777777777777777777777665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-21 Score=181.27 Aligned_cols=170 Identities=19% Similarity=0.179 Sum_probs=156.3
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
..+.+|+++|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
+...+++..|...+.+++...|. +..++..+|.+ |... |++++|+.+|++++..+|.++.+++.+|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLV-YDSM------------GEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHh------------CCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 99999999999999999998887 88888999999 8888 9999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
.+|...|++++|+.+|+++++++|
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCc
Confidence 999999999999999999999887
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=180.68 Aligned_cols=171 Identities=25% Similarity=0.333 Sum_probs=130.7
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
+++.+|+.+|.+|...|+|++|+.+|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 35667888888888888888888888888888888888888888888888888888888888888888888777777777
Q ss_pred Hc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhH
Q 004339 92 LI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 170 (760)
Q Consensus 92 ~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 170 (760)
+. .+++..|+..+.+++.+.|.+ ..++..+|.+|...|++++|+.+|++++.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~---------------------- 135 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVY-----ADAYYKLGLVYDSMGEHDKAIEAYEKTIS---------------------- 135 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHhCCchhHHHHHHHHHH----------------------
Confidence 66 567777777777777777665 66777777777777777777777777765
Q ss_pred HHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc
Q 004339 171 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 230 (760)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 230 (760)
.+|.++.+++++|.+|..+|++++|+.+|+++++.+|.+
T Consensus 136 ---------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 136 ---------------------IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ---------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred ---------------------hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 445666677777777777777777777777777766654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-20 Score=179.76 Aligned_cols=214 Identities=14% Similarity=0.028 Sum_probs=199.7
Q ss_pred HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHH
Q 004339 43 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIE 121 (760)
Q Consensus 43 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~ 121 (760)
..|.++.+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.++. .|++..|+.+|.+++.+.|.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~ 77 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-----AE 77 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hH
Confidence 467789999999999999999999999999999999999999999999998 889999999999999999886 89
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 122 VLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 122 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
++..+|.++... |++++|+.+|.+++. .| ..|....++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~----------------------------------------~~~~~~~~~ 116 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-DP----------------------------------------TYPTPYIAN 116 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST----------------------------------------TCSCHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc----------------------------------------CCcchHHHH
Confidence 999999999999 999999999999986 21 456778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CChHHHHHHHHHHhhcC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG-KYPNALSMLGDLELKND 279 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 279 (760)
+.+|.++...|++++|+.+|.+++...|.++.++..+|.++...|++++|+.++.+++...| .++.++..++.++...|
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYAT 303 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~ 303 (760)
+++.|..++..++...|. ++.+.
T Consensus 197 ~~~~a~~~~~~~~~~~p~-~~~~~ 219 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPY-SEELQ 219 (225)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHH
Confidence 999999999999988887 54443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=187.56 Aligned_cols=226 Identities=9% Similarity=0.040 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HcCCChHHHHHHHHHHhhc
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNL-------QLSIELVNEALK-VNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 278 (760)
.+|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+.+|++++. +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5885 899999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChH-HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~-~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
|+++.|+.+|++++...|. ++. +|..+|.+ +... |+++.|+.+|.+++...|.+..++...+.+.
T Consensus 113 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccc-CccHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999887 554 89999999 8888 9999999999999999999988888777765
Q ss_pred HH-cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-CC-CcHHHHHHHHHHHHH
Q 004339 358 AE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-YN-TDAQILLYLARTHYE 434 (760)
Q Consensus 358 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~-~~~~~~~~la~~~~~ 434 (760)
.. .|+++.|+.+|++++...| .++.+|..+|.++..+|++++|+.+|++++..+. .| ....+|..++.++..
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 43 7999999999999999999 8899999999999999999999999999999632 33 358899999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCChhH
Q 004339 435 AEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.|+++.|..++.++++..|++...
T Consensus 254 ~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCHHHHHHHHHHHHHHccccccc
Confidence 999999999999999999987644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-20 Score=179.33 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=187.9
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.|.++..++.+|.+++..|+|++|+.+|++++..+| .+..+++.+|.++...|++++|+.+|.+++..+|.++.++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 355678999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPI-------EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
|.++. .|++.+|+..|++++.+.|.+ + .++..+|.++...|++++|+.+|.+++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------ 145 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGN-----ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------------ 145 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------------
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------------
Confidence 99999 889999999999999999986 5 6699999999999999999999999987
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.+|. ++.+++++|.+|...| ...+.++..+.+.....+ .+
T Consensus 146 -------------------------------~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~ 187 (228)
T 4i17_A 146 -------------------------------VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--AS 187 (228)
T ss_dssp -------------------------------SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HH
T ss_pred -------------------------------cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HH
Confidence 6778 8899999999997655 345666777766665444 34
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 239 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
......+.+++|+.+|+++++++|+++.+...++.+...
T Consensus 188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 445567789999999999999999999999888877543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=193.74 Aligned_cols=251 Identities=12% Similarity=0.046 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHc-c
Q 004339 31 RSALTNFEKVLEIYPDNCETLKALGHIYVQ-------LGQI-------EKAQELLRKAAK-IDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~-~ 94 (760)
..|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+.+|++++. ++|++..+|..+|.++. .
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 79999999999999988 8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIE-VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
|+++.|+..|++++.+.|.+ +. +|..+|.++...|++++|+.+|.+++.
T Consensus 113 ~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------------- 162 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKARE------------------------- 162 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHT-------------------------
T ss_pred CCHHHHHHHHHHHHhccccC-----ccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------------------------
Confidence 89999999999999988875 44 899999999999999999999999997
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ-IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
..|....++...+.+... .|+++.|+.+|++++..+|.++.+|..++.++...|++++|+.
T Consensus 163 ------------------~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 163 ------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp ------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ------------------cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 344556667666666443 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---cC-CChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 253 LVNEALKV---NG-KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 253 ~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+|++++.. .| ....+|..++.++...|+++.|..++.+++...|....... ++.+ . ..
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~--~~~~--~--------------~r 286 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE--TALL--V--------------DR 286 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH--HHHH--H--------------TT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch--HHHH--H--------------HH
Confidence 99999996 44 47789999999999999999999999999999886321111 1111 1 11
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGV 355 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (760)
.+++.++|.++.+++.||.
T Consensus 287 --------~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 287 --------YKFMDLYPCSASELKALGY 305 (308)
T ss_dssp --------TCBTTBCSSCHHHHHTTTC
T ss_pred --------HHhcccCCCCHHHHHhcCC
Confidence 1456789999999988875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-21 Score=208.87 Aligned_cols=214 Identities=18% Similarity=0.137 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHH
Q 004339 29 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKT 106 (760)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~ 106 (760)
.++.|+..+..+....|.++.+++.+|.++...|++ ++|+.+|++++.++|.++.+|+.+|.+|. .|++.+|+.+|.+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477888888888888999999999999999999999 99999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhH
Q 004339 107 ARTLLKKAGEEVPIEVLNNIGVIHFEK---------GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 177 (760)
Q Consensus 107 al~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (760)
++.+.|. ..++..+|.+|... |++++|+.+|++++.
T Consensus 163 al~~~p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----------------------------- 207 (474)
T 4abn_A 163 ALTHCKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----------------------------- 207 (474)
T ss_dssp HHTTCCC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHhhCCC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-----------------------------
Confidence 9999876 58999999999999 999999999999998
Q ss_pred HhhhhhhccCCCccCCcchHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHcCC
Q 004339 178 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQI--------HDTVAASVLYRLILFKYQ---DYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 178 ~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~ 246 (760)
..|.++.+++.+|.+|... |++++|+.+|++++.++| .++.+|+.+|.+|...|+
T Consensus 208 --------------~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 208 --------------MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred --------------hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 5678899999999999999 999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 004339 247 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 247 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 291 (760)
+++|+.+|.+++.++|+++.++..++.++...|++++|+..+.++
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999877554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-17 Score=186.83 Aligned_cols=433 Identities=9% Similarity=0.036 Sum_probs=318.4
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC--
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---IEKAQELLRKAAKIDP-- 79 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p-- 79 (760)
+.|..+|.+...|..++......+.+..|..+|++++...|.....|...+......|+ +..+..+|++++...|
T Consensus 57 ~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~ 136 (679)
T 4e6h_A 57 DMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN 136 (679)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred HHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence 56778999999999999999999999999999999999999999999999999999999 9999999999999984
Q ss_pred CcHHHHHHHHHHHc-cCCH--------hHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH---------HcCCHHHHH
Q 004339 80 RDAQAFIDLGELLI-SSDT--------GAALDAFKTARTLLKK-AGEEVPIEVLNNIGVIHF---------EKGEFESAH 140 (760)
Q Consensus 80 ~~~~~~~~la~~~~-~~~~--------~~A~~~~~~al~~~~~-~~~~~~~~~~~~la~~~~---------~~g~~~~A~ 140 (760)
.++..|..+..... .++. ......|++|+...+. + .....+|.....+.. ..++++.+.
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d--~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R 214 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFE--PKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR 214 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTC--SSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccc--ccchHHHHHHHHHHHhccccCcHHHHhHHHHHH
Confidence 57788888776544 3332 3344788888876443 2 123567776666543 345678899
Q ss_pred HHHHHHhcccchhhhhccc--chhhh--hhh--hhHHH-----HHH-hHHhhhhhh----ccCCCccC---------Cc-
Q 004339 141 QSFKDALGDGIWLTLLDSK--TKTYV--IDA--SASML-----QFK-DMQLFHRFE----NDGNHVEL---------PW- 194 (760)
Q Consensus 141 ~~~~~al~~~p~~~~~~~~--~~~~~--~~~--~~~~~-----~~~-~~~~~~~l~----~~~~~~~~---------~p- 194 (760)
.+|.+++.. |........ ...+. ++. ....+ .+. ....+..+. .+...+.. .|
T Consensus 215 ~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 215 KLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 999999975 311100000 00000 000 00000 000 000111111 11110000 01
Q ss_pred ------chHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHH
Q 004339 195 ------NKVTVLFNLARLLEQIH-------DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEALKV 260 (760)
Q Consensus 195 ------~~~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 260 (760)
.....|..+.......+ .......+|++++...|.++.+|+..+..+...|+...|. .+|.+++..
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 11234444443332222 1345678999999999999999999999999999999997 999999999
Q ss_pred cCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC-----------CCC----------ChHHHHHHHHHHHHHHHhhhh
Q 004339 261 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----------DGK----------DSYATLSLGNWNYFAALRNEK 319 (760)
Q Consensus 261 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------~~~----------~~~~~~~lg~~~y~~~~~~~~ 319 (760)
.|.+..+|..++.+....|+++.|..+|.+++... |.. ...+|+.++.+ ..+.
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-erR~----- 447 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MKRI----- 447 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HHHH-----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HHHc-----
Confidence 99999999999999999999999999999999752 321 23356666665 5555
Q ss_pred cCchHHhhcHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 004339 320 RAPKLEATHLEKAKELYTRVIVQ-HTSNLYAANGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 397 (760)
Q Consensus 320 ~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~ 397 (760)
|..+.|..+|.+++.. .+....+|...|.+....+ +++.|..+|..+++..| .++..|..++....
T Consensus 448 -------~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 448 -------QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYINKYLDFLI 515 (679)
T ss_dssp -------HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHH
Confidence 8899999999999988 4455667777777777665 49999999999999998 78999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 398 AQGNFALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
..|+.+.|..+|++++...+.+ ....+|..+...-...|+.+.+..++.++++..|+++.+
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999999999999975432 236788888888889999999999999999999998644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-20 Score=197.18 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
..++.+|.+++..|++++|+.+|.+++.... .....+..+.++
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------~~~~~~~~a~~~ 146 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLI-------------------------------------FVKDRIEKAEFF 146 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG-------------------------------------GCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh-------------------------------------hCCCHHHHHHHH
Confidence 3556689999999999999999999987421 011233466889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh------HH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NA 267 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~ 267 (760)
+.+|.+|...|+++.|+.+|.+++...+. ...++..+|.++...|++++|+.+|.+++.+.+... .+
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 226 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999999999987443 345778888888888888888888888887654322 25
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC-CCC
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSN 346 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~ 346 (760)
+..+|.+|...|++++|+.+|.+++.+.+.. .+ |..
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-------------------------------------------~~~~~~ 263 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEES-------------------------------------------NILPSL 263 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------------------------------------TCGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------------------------------ccchhH
Confidence 5556666666666666666666555521000 23 445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhcCCCcHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTDAQ 423 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~ 423 (760)
+.++..+|.++...|++++|+.+|.+++.+.+....+.....+..+|.+|...|+ +.+|+.++++.-. .+....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---YADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---HHHHHH
Confidence 5566666666666666666666666666664321111223335566777777776 5566666555411 122355
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 453 (760)
++..+|.+|...|++++|+.+|++++.+..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=200.54 Aligned_cols=231 Identities=10% Similarity=0.070 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------- 264 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 264 (760)
..++.+|.++...|++++|+.+|.+++.. .+....++..+|.++...|+++.|+.++.+++.+.+..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35667999999999999999999999986 22356789999999999999999999999999986544
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++..+|.+|...|++++|+.+|.+++.+.+.... . +
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~----------------------------------~ 221 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------P----------------------------------Q 221 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------H----------------------------------H
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------h----------------------------------H
Confidence 348889999999999999999999999876443110 0 1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc--
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-- 421 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 421 (760)
....++.++|.+|...|++++|+.+|.+++.+.+.... |..+.++.++|.+|..+|++++|+.+|++++...+...+
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 12345677899999999999999999999996442222 478999999999999999999999999999998654343
Q ss_pred -HHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 422 -AQILLYLARTHYEAEQ---WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 422 -~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
...+..+|.+|...|+ +.+|+.+++++ ...|....++..+|.+|...+.
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCC
Confidence 3446789999999999 88888888876 4445556788899999887764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-18 Score=200.00 Aligned_cols=227 Identities=17% Similarity=0.149 Sum_probs=195.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
+.+.+|+.+|.++...|++.+|+..|.++ +++..|..+|.++...|++++|+.+|..+.+..+. +.+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence 45789999999999999999999999775 78899999999999999999999999999988743 3334459999
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
|.+.+++.. +..|- ... +...+..+|.. ++.. |+++.|+.+|.++ ..|..+|
T Consensus 1177 YAKl~rlee-le~fI-----~~~-n~ad~~~iGd~-le~e------------g~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFI-----NGP-NNAHIQQVGDR-CYDE------------KMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred HHhhcCHHH-HHHHH-----hCC-CHHHHHHHHHH-HHhc------------CCHHHHHHHHHhh--------hHHHHHH
Confidence 999999885 44442 122 45667789999 8888 9999999999996 4788999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 434 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 434 (760)
.+|...|+++.|++++.++ .++.+|...+.++...|+|..|..+... +. .+++.+..++..|..
T Consensus 1229 ~tLvkLge~q~AIEaarKA----------~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-----v~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-----VHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh----------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh-----cCHHHHHHHHHHHHH
Confidence 9999999999999999988 3478999999999999999999998774 33 447778899999999
Q ss_pred hccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 435 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
.|.|++|+.+|++++.++|.+...+..++.+|.+...
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999876554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-18 Score=196.49 Aligned_cols=108 Identities=15% Similarity=0.228 Sum_probs=87.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHh
Q 004339 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTG 98 (760)
Q Consensus 20 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~ 98 (760)
+|.++...|.|++|..+|+++- .+.. .+..++...|++++|++++.++ +.+.+|+.+|.++. .|++.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4999999999999999999972 1111 2233344788999999998865 56899999999988 78999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 99 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 99 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
+|+.+|.++ + .+..|..+|.++...|+|++|+.+|..+...
T Consensus 1123 EAIdsYiKA-----d-----D~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1123 EAIDSYIKA-----D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHHHHHHhc-----C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999876 2 2788999999999999999999999998864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-20 Score=200.63 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=185.2
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCH-HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchH
Q 004339 246 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 324 (760)
Q Consensus 246 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~ 324 (760)
.++.++..+..+....|.++.+++.+|.++...|++ ++|+.+|.+++...|. ...+++.+|.+ |...
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~-~~~~---------- 150 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEV-YWKK---------- 150 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH----------
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHc----------
Confidence 356777777777778888888888999999889998 9999999999888887 78888999998 8888
Q ss_pred HhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 004339 325 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK---------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 395 (760)
Q Consensus 325 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.++|+ ..++..+|.+|... |++++|+.+|.+++.+.| .++.+|+++|.+
T Consensus 151 --g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~ 222 (474)
T 4abn_A 151 --GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-----LDGRSWYILGNA 222 (474)
T ss_dssp --TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHH
Confidence 9999999999999999998 78999999999999 999999999999999999 889999999999
Q ss_pred HHHc--------CCHHHHHHHHHHHHhhhcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 396 YFAQ--------GNFALAMKMYQNCLRKFYYN---TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 396 ~~~~--------g~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
|..+ |++++|+..|++++.. .| .++.+++.+|.+|..+|++++|+.+|++++.++|+++.++++++.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999 9999999999999997 56 779999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004339 465 AMQKFS 470 (760)
Q Consensus 465 ~~~~~~ 470 (760)
++..++
T Consensus 301 ~~~~lg 306 (474)
T 4abn_A 301 LLEFLS 306 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987766
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-19 Score=173.68 Aligned_cols=216 Identities=12% Similarity=0.092 Sum_probs=153.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
.++..++.+|.++...|++++|+..|.+++...| .+..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3456666667766666777777777776666666 666666666666666666666666666666666666666666666
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 353 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 353 (760)
+|...|++++|+.+|.+++...|. ++..+..++ .++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~----------------------------------------~~~~~~ 123 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYA----------------------------------------IYYLKE 123 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH----------------------------------------HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHH----------------------------------------HHHHHH
Confidence 666666666666666666665554 322222222 357778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
|.++...|++++|+.+|.+++.+.| . ++.+++++|.+|...|+ ..+.++.... +.++. ...+..
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~--~~~~~--~~~~~~ 189 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATDVTS-----KKWKTDALYSLGVLFYNNGA-----DVLRKATPLA--SSNKE--KYASEK 189 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSC-----HHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT--TTCHH--HHHHHH
T ss_pred hHHHHHhccHHHHHHHHHHHHhcCC-----CcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc--cCCHH--HHHHHH
Confidence 9999999999999999999999998 8 88999999999977653 4456666652 23332 334555
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 432 HYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 432 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
....+.+++|+.+|+++++++|+++.+...++.+
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 6778999999999999999999999888877765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=192.45 Aligned_cols=254 Identities=19% Similarity=0.117 Sum_probs=198.5
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--- 77 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 77 (760)
.+|..+.+++.+|.+++..|++++|+.+|++++.. .|..+.++..+|.+|...|++++|+.+|.+++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999999985 5667889999999999999999999999999987
Q ss_pred -----CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 78 -----DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA--G-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 78 -----~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
.|....++..+|.++. .|++..|+.+|.+++.+.... . .+....++..+|.++...|++++|+.+|.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667788999999998 789999999999999986221 0 011268899999999999999999999999987
Q ss_pred ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 149 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
.... ......|....+++.+|.++...|++++|+.+|.+++...|
T Consensus 182 ~~~~-----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 182 IYQT-----------------------------------KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHH-----------------------------------TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------------------------------HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3100 00013566778999999999999999999999999997643
Q ss_pred C---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 229 D---------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 229 ~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
. ....+..++..+...+.+.+|+..+..++...|..+.++..+|.+|...|++++|+.+|.+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 1233344445555667777788889999988899999999999999999999999999999998
Q ss_pred cCCC
Q 004339 294 ATDG 297 (760)
Q Consensus 294 ~~~~ 297 (760)
+.|.
T Consensus 307 l~~~ 310 (311)
T 3nf1_A 307 SRKQ 310 (311)
T ss_dssp HHC-
T ss_pred Hhhc
Confidence 7653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=190.36 Aligned_cols=249 Identities=15% Similarity=0.090 Sum_probs=198.2
Q ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Q 004339 191 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN- 261 (760)
Q Consensus 191 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 261 (760)
..+|..+.+++.+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.+|.+++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999999999985 56778899999999999999999999999999874
Q ss_pred -------CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC-----C--CCChHHHHHHHHHHHHHHHhhhhcCchHHhh
Q 004339 262 -------GKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEAT 327 (760)
Q Consensus 262 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~--~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 327 (760)
|....++..+|.++...|++.+|+.+|.+++... + .....++..+|.+ |... |
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------~ 167 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL-CQNQ------------G 167 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------T
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHc------------C
Confidence 4456689999999999999999999999999864 1 1245678889998 8888 9
Q ss_pred cHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC----CCCCCc------hHHH
Q 004339 328 HLEKAKELYTRVIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQM------PDVW 389 (760)
Q Consensus 328 ~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~------~~~~ 389 (760)
+++.|+.+|.+++.. .|....++..+|.+|...|++++|+.+|.+++...|. ...+.. ...+
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999999999998 6777789999999999999999999999999987541 111122 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 390 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..++..+...+.+.+|+..+..++.. .+..+.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 44455556666777788888888873 5566899999999999999999999999999999875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=185.48 Aligned_cols=239 Identities=12% Similarity=0.027 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------- 264 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 264 (760)
..++.+|..+...|++++|+.+|.+++... |....++..+|.++...|++..|+.++.+++.+.+..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 367889999999999999999999999764 2356789999999999999999999999999886532
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
..++..+|.+|...|++++|+.+|.+++.+.+. ....++..+|.+ |... |+++.|+.+|.++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~~a 248 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS-YDRS------------GDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHH
Confidence 347889999999999999999999999986432 124578899999 9999 9999999999999
Q ss_pred Hh-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 004339 340 IV-----QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQN 411 (760)
Q Consensus 340 l~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 411 (760)
+. .+|..+.++..+|.++...|++++|+.+|++++.+.+....+.....+..++.++...++ +.+|+.++++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99 788888999999999999999999999999999997644334556677888999999998 8888888776
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 412 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 412 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.-. .+....++..+|.+|...|++++|+.+|++++.+.
T Consensus 329 ~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 329 KNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 321 22336788899999999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=206.87 Aligned_cols=174 Identities=21% Similarity=0.300 Sum_probs=157.5
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
...|+++.+|+.+|.+|...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
+|.+|. .|++++|+.+|++++++.|.+ +.+++++|.+|..+|++++|+.+|++++.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~-----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~------------------ 139 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAF-----ADAHSNLASIHKDSGNIPEAIASYRTALK------------------ 139 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 999988 789999999999999999886 88999999999999999999999999987
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 229 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 229 (760)
.+|+++.+++++|.++..+|++++|+..|.+++.+.|+
T Consensus 140 -------------------------l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 140 -------------------------LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp -------------------------HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred -------------------------hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 56788889999999999999999999999998877553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=192.06 Aligned_cols=333 Identities=12% Similarity=0.083 Sum_probs=174.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHH
Q 004339 23 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAAL 101 (760)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~ 101 (760)
.....|++++|..+++++ +++.+|..+|.++...|++.+|+..|.++ .++..+..++..+. .|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 345778899999999998 34569999999999999999999999764 46668888888877 78999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhh
Q 004339 102 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 181 (760)
Q Consensus 102 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (760)
.++..+.+..+. +.+...++.+|.++|++.++..++.
T Consensus 82 ~yl~~ark~~~~------~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------------- 118 (449)
T 1b89_A 82 KYLQMARKKARE------SYVETELIFALAKTNRLAELEEFIN------------------------------------- 118 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------------------------------------
T ss_pred HHHHHHHHhCcc------chhHHHHHHHHHHhCCHHHHHHHHc-------------------------------------
Confidence 999999886443 5778889999999999998876662
Q ss_pred hhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 182 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 182 ~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
.| +..++..+|..+...|.|++|..+|..+ ..|..+|.++..+|++++|+..+.++
T Consensus 119 -----------~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA---- 174 (449)
T 1b89_A 119 -----------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA---- 174 (449)
T ss_dssp -----------CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred -----------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence 12 3359999999999999999999999977 46899999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 262 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 262 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
+++.+|...+.++...|+|..|..+...++ . .+.-...+..+ |... |.+++|+.++++++.
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~----~ad~l~~lv~~-Yek~------------G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V----HADELEELINY-YQDR------------GYFEELITMLEAALG 235 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T----CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHTT
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h----CHhhHHHHHHH-HHHC------------CCHHHHHHHHHHHhC
Confidence 478999999999999999999988776533 3 33445567777 8887 999999999999999
Q ss_pred hCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 004339 342 QHTSNLYAANGAGVVLA--EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---- 415 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 415 (760)
+++.+..++..+|.+|. +.++..++++.|...+.+.|--.....+..|..+..+|...++|+.|+..+-.....
T Consensus 236 le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~ 315 (449)
T 1b89_A 236 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 315 (449)
T ss_dssp STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhh
Confidence 99999999999999998 456788888888665554430000034778999999999999999998865443211
Q ss_pred ------hcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCC
Q 004339 416 ------FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI--HLAP 453 (760)
Q Consensus 416 ------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p 453 (760)
...+.+.++++.....|. +....++..+..++ .++|
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~ 359 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH 359 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc
Confidence 113566888888887777 66777888888888 5555
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-19 Score=200.94 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=157.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
..|+++.++++||.+|..+|++++|+.+|+++++++|++..+++++|.+|...|++++|+..|+++++++|+++.+++.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
|.+|...|++++|+.+|++++.+.|. ...+++++|.+ |... |++++|+.+|+++++++|+++.++.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~-~~~~------------g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASI-HKDS------------GNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHh
Confidence 99999999999999999999998887 88888899988 8888 8999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
++|.+|...|++++|+..|.+++++.|
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 999999999999999999988888775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=178.26 Aligned_cols=215 Identities=17% Similarity=0.131 Sum_probs=147.6
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
..+|.++..++.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.+|+..|++.+|+..|++++..+|+++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~- 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR- 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-
Confidence 3455556666666666666666666666666666666665 566666666666666666666666666666554321
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhcccchhhhh
Q 004339 85 FIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE--------KGEFESAHQSFKDALGDGIWLTLL 156 (760)
Q Consensus 85 ~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~ 156 (760)
.+.+++.+|.+++. .|++++|+..|.+++...|.....
T Consensus 88 ----------------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 133 (261)
T 3qky_A 88 ----------------------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV 133 (261)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred ----------------------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH
Confidence 15677888888888 899999999999999866633211
Q ss_pred cccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHH
Q 004339 157 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDA 233 (760)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~ 233 (760)
...... +. ...+.....++.+|.+|...|++++|+..|++++..+|+ ...+
T Consensus 134 ~~a~~~---------~~-----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 134 DDATQK---------IR-----------------ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp HHHHHH---------HH-----------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHH---------HH-----------------HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHH
Confidence 100000 00 011123344689999999999999999999999999887 5678
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHHcCCChH---HHHHHHHHHhhcCCHHH
Q 004339 234 YLRLAAIAKAR----------NNLQLSIELVNEALKVNGKYPN---ALSMLGDLELKNDDWVK 283 (760)
Q Consensus 234 ~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~ 283 (760)
++.+|.+|... |++++|+.+|.+++..+|+++. +...++.++...++++.
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 188 LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999877 8899999999999999999864 55566666666555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=172.46 Aligned_cols=106 Identities=17% Similarity=0.042 Sum_probs=82.8
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC---h
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY---P 265 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 265 (760)
..|..+..++.+|..+...|++++|+..|.+++..+|.+ ..+++.+|.++...|++++|+..|.+++..+|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 567778888888888888888888888888888888887 7888888888888888888888888888887754 4
Q ss_pred HHHHHHHHHHhh--------cCCHHHHHHHHHHhhhcCCC
Q 004339 266 NALSMLGDLELK--------NDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 266 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~ 297 (760)
.+++.+|.++.. .|++.+|+..|.+++...|.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 577777887777 55666666666666555554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-18 Score=182.42 Aligned_cols=238 Identities=16% Similarity=0.085 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
..++.+|..++..|++++|+.+|.+++...+ .+...+..+.++
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------~~~~~~~~a~~~ 144 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELP-------------------------------------FVSDDIEKAEFH 144 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG-------------------------------------GCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh-------------------------------------hCCChHHHHHHH
Confidence 4567889999999999999999999987421 111234567789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------ChHH
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YPNA 267 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~ 267 (760)
+.+|.+|...|++..|+.++.+++...+. ...++..+|.++...|++++|+.+|.+++.+.+. ...+
T Consensus 145 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 224 (378)
T 3q15_A 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999977542 3557889999999999999999999999987532 2347
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhh-----cCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 268 LSMLGDLELKNDDWVKAKETFRAASD-----ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 268 ~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
+..+|.+|...|++++|+.+|.+++. ..|. ...++..+|.+ |... |+++.|+.+|++++.+
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWT-LCKA------------GQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHH
Confidence 88999999999999999999999998 5555 47888999999 9888 9999999999999987
Q ss_pred C-----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 343 H-----TSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 343 ~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
. |.....+..++.++...|+ +.+|+.++.+... .| ....++..+|.+|...|++++|+.+|++++.
T Consensus 291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~-----~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HA-----YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 4445567778888888888 7888888776321 22 4567888999999999999999999999988
Q ss_pred h
Q 004339 415 K 415 (760)
Q Consensus 415 ~ 415 (760)
.
T Consensus 365 ~ 365 (378)
T 3q15_A 365 A 365 (378)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-18 Score=170.17 Aligned_cols=248 Identities=13% Similarity=-0.032 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDT-VAASVLYRLILFKYQDYVDAYLRLAAIAKARN--NLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 199 ~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
..+...+.....|.+ ++|+.++..+|.++|.+..+|+..+.++..+| .+++++.++..++..+|.+..+|...+.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 334444444555555 69999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ----hhc---CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHH--HHHHHHHHHHhhCCCC
Q 004339 276 ----LKN---DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--KAKELYTRVIVQHTSN 346 (760)
Q Consensus 276 ----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~ 346 (760)
... +++.+++.++.+++...|. +..+|...+.+ +... +.++ .++.++.+++..+|.|
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~v-l~~l------------~~~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWL-VDTF------------DLHNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCTTCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------cccChHHHHHHHHHHHHhCCCC
Confidence 666 7899999999999999998 89999999988 7777 8887 9999999999999999
Q ss_pred HHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhh-cC
Q 004339 347 LYAANGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKMYQNCLRKF-YY 418 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~-~~ 418 (760)
..+|...+.++...|. +++++.++.+++..+| .+..+|+.++.++...|+... ...++.+++..- ..
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-----~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-----QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 9999999999999887 9999999999999999 899999999999999998655 445666666541 13
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCChhHHhhHHHH
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIH-LAPSNYTLRFDAGVA 465 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~ 465 (760)
+.++.++..++.+|.+.|+.++|+.+|..+.. ++|-....|...+..
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 66799999999999999999999999999997 899988888766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=177.50 Aligned_cols=316 Identities=12% Similarity=0.025 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004339 48 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 127 (760)
Q Consensus 48 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 127 (760)
..++..+|.++...|+++.|+.++++++...|...... ...++..+|
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------~~~~~~~l~ 60 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---------------------------------RIVATSVLG 60 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH---------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH---------------------------------HHHHHHHHH
Confidence 35566777777778888888888888777766432110 022344445
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHH
Q 004339 128 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 207 (760)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~ 207 (760)
.++...|+++.|+..+.+++...+... .......++.++|.++
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHD-------------------------------------VWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHH
Confidence 555555555555555555544221000 0001123344555555
Q ss_pred HHcCCHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-----ChHHHHHHHHH
Q 004339 208 EQIHDTVAASVLYRLILFKY--------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGDL 274 (760)
Q Consensus 208 ~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~ 274 (760)
...|++++|+.+|.+++... |....++..+|.++...|++++|..++.+++...+. ...++..+|.+
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 55555555555555555443 223344455555556666666666666666555443 22456667777
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCC-ChHHHH-----HHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC--
Q 004339 275 ELKNDDWVKAKETFRAASDATDGK-DSYATL-----SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-- 346 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~-----~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 346 (760)
+...|++++|..++.+++...+.. ....+. .++.+ +... |+++.|..++.+++...|..
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY-WQMT------------GDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHhCCCCCCCcch
Confidence 777777777777777766553221 111111 23333 4455 99999999999998876643
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHH
Q 004339 347 --LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 423 (760)
Q Consensus 347 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 423 (760)
..++..+|.++...|++++|+..+.+++...+....+ ....++..+|.++...|++++|...|.+++.......
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g--- 327 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG--- 327 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc---
Confidence 3356788999999999999999999998876521111 1235788889999999999999999999988642211
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
....+...| ......+...+...|.+
T Consensus 328 ----~~~~~~~~g--~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 328 ----FISHFVIEG--EAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp ----CCHHHHTTH--HHHHHHHHHHHHTTCSC
T ss_pred ----HHHHHHHcc--HHHHHHHHHHHhCCCCc
Confidence 112233344 56677788888887763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-16 Score=168.08 Aligned_cols=311 Identities=13% Similarity=0.028 Sum_probs=236.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
...+++.+|.+++..|+++.|+.++++++...|... .++..+|.++...|+++.|+..|.+++.+.|.....+.
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 91 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY- 91 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-
Confidence 356778899999999999999999999999887652 25677788888888888888888887776543221110
Q ss_pred HHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 88 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 88 la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
...++..+|.++...|++++|+.+|.+++...+...
T Consensus 92 -------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~------------- 127 (373)
T 1hz4_A 92 -------------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH------------- 127 (373)
T ss_dssp -------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------
T ss_pred -------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-------------
Confidence 145678899999999999999999999987432000
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-----YVDAYLRLAAIAK 242 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~ 242 (760)
....|....++.++|.++...|++++|..++.+++...+. ...++..+|.++.
T Consensus 128 ----------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 128 ----------------------LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp ----------------------CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred ----------------------cccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 0012456678889999999999999999999999988764 3567889999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCC--ChHHHH-----HHHHHHhhcCCHHHHHHHHHHhhhcCCCCC---hHHHHHHHHHHHH
Q 004339 243 ARNNLQLSIELVNEALKVNGK--YPNALS-----MLGDLELKNDDWVKAKETFRAASDATDGKD---SYATLSLGNWNYF 312 (760)
Q Consensus 243 ~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~lg~~~y~ 312 (760)
..|++++|+.++.+++.+.+. .+..+. .++.++...|++..|..++..++...+... ...+..++.+ +.
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~-~~ 264 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA-QI 264 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH-HH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH-HH
Confidence 999999999999999987433 222221 345568899999999999999998765421 2356778888 88
Q ss_pred HHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCch
Q 004339 313 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 386 (760)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 386 (760)
.. |++++|...+.+++...+. ...++..+|.++...|++++|...|.+++.+.+ .
T Consensus 265 ~~------------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~-----~-- 325 (373)
T 1hz4_A 265 LL------------GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN-----R-- 325 (373)
T ss_dssp HT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----H--
T ss_pred Hc------------CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-----c--
Confidence 87 9999999999999876442 224788899999999999999999999998875 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 387 DVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
......+...| .....++..++..
T Consensus 326 ---~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 326 ---TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp ---HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred ---ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 11112233333 5666777777764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-16 Score=175.11 Aligned_cols=435 Identities=11% Similarity=0.010 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCC---HhHHHHHHH
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSD---TGAALDAFK 105 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~---~~~A~~~~~ 105 (760)
...-+..|++.+..+|.+...|..++..+...+.+..+..+|++++...|.....|..++.... .++ +..+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 4456778999999999999999999999999999999999999999999999999999988866 567 999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH----HH----HHHHHHHHhcccch-hhhhcccchhhhhhhhhH---HHH
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEF----ES----AHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS---MLQ 173 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~---~~~ 173 (760)
+++...|.. ..+.+|..........++. .. ....|+.++..... ...... .....+..... ...
T Consensus 128 Ral~~~~~~---~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~-iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 128 RCLSKELGN---NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQ-FWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHTCSSSCC---CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHH-HHHHHHHHHHTCCCCSH
T ss_pred HHHHhcCCC---CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchH-HHHHHHHHHHhccccCc
Confidence 999988311 1277888887776666554 33 44778887753221 110000 00000000000 000
Q ss_pred H-HhHHhhhhhhccCCCccCCcchH-HHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH-------cCCc-
Q 004339 174 F-KDMQLFHRFENDGNHVELPWNKV-TVLFNLARL-------------LEQIHDTVAASVLYRLILFK-------YQDY- 230 (760)
Q Consensus 174 ~-~~~~~~~~l~~~~~~~~~~p~~~-~~~~~la~~-------------~~~~g~~~~A~~~~~~~l~~-------~p~~- 230 (760)
+ ....+...-..+...+..+.... .+|...... -.....|..|...|...-.. .|..
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 0 00011111111222332222211 222111111 11122344555555442211 1111
Q ss_pred ------------------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 231 ------------------VDAYLRLAAIAKARN-------NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 231 ------------------~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
...|..........+ .......+|++++...|.++.+|+..+.++...|+...|+
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 234444444333222 1234568899999999999999999999999999999997
Q ss_pred -HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh-----------CCC--------
Q 004339 286 -ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-----------HTS-------- 345 (760)
Q Consensus 286 -~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~-------- 345 (760)
.+|.+++...|. ....|+.++.+ .... |+++.|..+|++++.. .|.
T Consensus 364 r~il~rAi~~~P~-s~~Lwl~~a~~-ee~~------------~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 364 TKYLKLGQQCIPN-SAVLAFSLSEQ-YELN------------TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 999999998887 77778888887 7776 9999999999999875 253
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhcCCCc
Q 004339 346 ---NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 346 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 421 (760)
...+|..++.+..+.|..+.|..+|.+|+...|. ....+|...|.+....++ ++.|..+|+.+++.+ |.+
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~----~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~ 503 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL----VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG----SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTC
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCc
Confidence 3457888888888999999999999999987331 346788888888777764 999999999999986 456
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---ChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS---NYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 498 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~ 498 (760)
+.++..++......|+.+.|..+|++|+...|+ ...+|..+. .++...+.++.+.+++
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~-------------------~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI-------------------FFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH-------------------HHHHHTCCSHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------HHHHHcCCHHHHHHHH
Confidence 788888899999999999999999999999884 222222221 3444445566666777
Q ss_pred HHHhhcCCC
Q 004339 499 SHLSAASNL 507 (760)
Q Consensus 499 ~~l~~~~~~ 507 (760)
.++....|.
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 666665544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=165.21 Aligned_cols=241 Identities=10% Similarity=-0.035 Sum_probs=213.9
Q ss_pred hhHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--
Q 004339 18 YGLGQVQLKLGDF-RSALTNFEKVLEIYPDNCETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL-- 92 (760)
Q Consensus 18 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~-- 92 (760)
+......+..|.+ ++|+.++.++|.++|++..+|+..+.++..+| .+.+++.++..++..+|.+..+|...+.++
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3344444566666 68999999999999999999999999999999 999999999999999999999999999988
Q ss_pred --c-c---CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHhcccchhhhhcccchhhh
Q 004339 93 --I-S---SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE--SAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 93 --~-~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
. . +++.+++.++.+++..+|++ ..+|+..+.++...|.++ +++.++.+++.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---------------- 174 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKN-----HHVWSYRKWLVDTFDLHNDAKELSFVDKVID---------------- 174 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH----------------
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcccChHHHHHHHHHHHH----------------
Confidence 5 4 68999999999999999997 899999999999999998 99999999997
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD------TVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
.+|.+..+|...+.++...+. +++++.++.+++..+|.+..+|..++
T Consensus 175 ---------------------------~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 175 ---------------------------TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp ---------------------------HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred ---------------------------hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 677899999999999999987 99999999999999999999999999
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHHc---CCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh-cCCCCChHHHHHHH
Q 004339 239 AIAKARNNLQL-SIELVNEALKVN---GKYPNALSMLGDLELKNDDWVKAKETFRAASD-ATDGKDSYATLSLG 307 (760)
Q Consensus 239 ~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~lg 307 (760)
.++...|+... ...++.+++.+. |.++.++..++.+|...|+.++|+.+|..+.. ..|- ....|...+
T Consensus 228 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~ 300 (306)
T 3dra_A 228 GIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence 99999998655 455777777766 88999999999999999999999999999987 4554 545544433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=171.21 Aligned_cols=259 Identities=15% Similarity=0.069 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 107 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~a 107 (760)
+|..++.++-+.-+.....+ .++.. +++++|+.+|.++ |.+|. .|++++|+.+|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46677777777766543222 11232 2588999998887 44555 78999999999999
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhcc
Q 004339 108 RTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 186 (760)
Q Consensus 108 l~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (760)
+.+.+..+.+. .+.++.++|.+|..+|++++|+.+|.+++.+.+..
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--------------------------------- 110 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--------------------------------- 110 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------------------------------
Confidence 99977653221 25789999999999999999999999999753210
Q ss_pred CCCccCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 187 GNHVELPWNKVTVLFNLARLLEQI-HDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 187 ~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
...+....++.++|.+|... |++++|+.+|++++.+.|.. ..++..+|.++...|++++|+.+|++++.
T Consensus 111 ----g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 111 ----GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 01112356889999999996 99999999999999988743 56789999999999999999999999999
Q ss_pred HcCCChH-------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH----HHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 260 VNGKYPN-------ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY----ATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 260 ~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
+.|.+.. ++..+|.++...|++..|+.+|.+++.+.|..... .+..++.. |... ..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~-~~~~----------~~~~ 255 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA-VNEG----------DSEQ 255 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH-HHTT----------CTTT
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-HHcC----------CHHH
Confidence 9987653 67889999999999999999999999988763211 12223333 2110 1177
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 329 LEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 329 ~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
+..|+..|.+++.++|.+..++..+-..+
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999999998887766665554443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=161.92 Aligned_cols=169 Identities=11% Similarity=0.096 Sum_probs=144.7
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LGHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 76 (760)
++..++..|..++..|+|++|+.+|++++..+|+++.+++. +|.+|...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcccchh
Q 004339 77 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF--ESAHQSFKDALGDGIWL 153 (760)
Q Consensus 77 ~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~ 153 (760)
++|+++.+++.+|.++. .|+++.|+.+|++++.+.|.+ +.+++.+|.+|+..|.. ..+...|..++.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----- 152 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLETDYKKLSS----- 152 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----
Confidence 99999999999999988 889999999999999999987 89999999998877643 445555555543
Q ss_pred hhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc
Q 004339 154 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 230 (760)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 230 (760)
.. ....+++.+|.++...|++++|+.+|++++.++|+.
T Consensus 153 --------------------------------------~~-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 153 --------------------------------------PT-KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp --------------------------------------CC-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred --------------------------------------CC-chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 11 233467888999999999999999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=195.34 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=62.5
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL--------EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 81 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (760)
+|.++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|++++.++|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 344444444433 44455555555555555 4445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 82 AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 82 ~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
+.+|+.+|.++. .|++++|+..|++++.+.|.+ +.+++++|.+|...|++++ +..|++++.
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-----LAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 444444444444 444444444444444444443 3444444444444444444 444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=169.77 Aligned_cols=253 Identities=13% Similarity=0.053 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHcc--C-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 66 KAQELLRKAAKIDPRDAQAFIDLGELLIS--S-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 142 (760)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 142 (760)
+|..++.++-+.-+.....+ .++.. . +++.|+.+|.++ |.+|...|++++|+.+
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~a-------------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM----KLFSGSDSYKFEEAADLCVQA-------------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH----HHHSCCSHHHHHHHHHHHHHH-------------------HHHHHHTTCTHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc----hhcCCCCCccHHHHHHHHHHH-------------------HHHHHHcCCHHHHHHH
Confidence 46677777776666432222 11222 2 478888777765 5567889999999999
Q ss_pred HHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 143 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 222 (760)
Q Consensus 143 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (760)
|.+++.+.+.. ...+..+.++.++|.+|..+|++++|+.+|.+
T Consensus 60 ~~~al~~~~~~-------------------------------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (292)
T 1qqe_A 60 FLKAADYQKKA-------------------------------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (292)
T ss_dssp HHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------------------------------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99998743210 01223467899999999999999999999999
Q ss_pred HHHHcCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCC------hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 223 ILFKYQDY------VDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 223 ~l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
++.+.|.. ..++..+|.+|... |++++|+.+|++++.+.|.. ..++..+|.++...|++++|+.+|.
T Consensus 103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 182 (292)
T 1qqe_A 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99987643 56899999999996 99999999999999998754 4578899999999999999999999
Q ss_pred HhhhcCCCCCh------HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH
Q 004339 290 AASDATDGKDS------YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA-----ANGAGVVLA 358 (760)
Q Consensus 290 ~al~~~~~~~~------~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~ 358 (760)
+++...|.... .+++.+|.+ |... |++..|+.+|++++.++|....+ +..++..+.
T Consensus 183 ~al~~~~~~~~~~~~~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 183 KLIKSSMGNRLSQWSLKDYFLKKGLC-QLAA------------TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHH-HHHT------------TCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 99998876432 267888998 8888 99999999999999999986653 445556554
Q ss_pred --HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 004339 359 --EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 359 --~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~ 396 (760)
..+++.+|+..|.+++.++| ....++..+-..+
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~~-----~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLDK-----WKITILNKIKESI 284 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCH-----HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhccCCccHH-----HHHHHHHHHHHHh
Confidence 45789999999999888777 5555555544433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=191.32 Aligned_cols=201 Identities=13% Similarity=0.076 Sum_probs=178.9
Q ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 191 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL--------FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262 (760)
Q Consensus 191 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 262 (760)
..+|.++.+++..+ ...|++++|+..|.+++ ..+|.+..+++.+|.++...|++++|+..|.+++..+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46778888887777 78899999999999999 88999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 263 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
+++.+++.+|.++...|++++|+..|++++.+.|. +..+++.+|.+ |... |++++ +.+|++++.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~-~~~~------------g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAAT-AELA------------GNTDE-HKFYQTVWST 529 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH-HHHH------------TCCCT-TCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHHc------------CChHH-HHHHHHHHHh
Confidence 99999999999999999999999999999999998 88999999999 9999 99999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLR 414 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 414 (760)
+|++..+++++|.++...|++++|+..|++++.++| .++.+++++|.+++..+...++ ...+..++.
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR-----HFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST-----THHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc-----ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998 8899999999999887764443 344444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=151.26 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC
Q 004339 265 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 344 (760)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 344 (760)
..++..+|.++...|++.+|+..|.+++...|. ...++..+|.+ +... |+++.|+.+|.+++...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIA-YVKT------------GAVDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCC
Confidence 346677788888888888888888888877766 67777888888 7777 888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHH
Q 004339 345 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 424 (760)
Q Consensus 345 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 424 (760)
.++.++..+|.++...|++++|+.+|.+++...| .++.++..+|.++...|++++|+.+|++++.. .|.++.+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 146 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-----INFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKV 146 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHH
Confidence 8888888888888888888888888888888887 67888888888888888888888888888886 5666888
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhH
Q 004339 425 LLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 425 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
+..+|.++...|++++|+.+|.+++.+.|++...
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 8888888888888888888888888888876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-16 Score=153.36 Aligned_cols=177 Identities=19% Similarity=0.213 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+..++..|..++..|++++|+.+|.+++...| .++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------------------------------~~~~~ 40 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-------------------------------------------DRTEM 40 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------------------CChHH
Confidence 67788999999999999999999999998544 44444
Q ss_pred HHH----------------HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 004339 200 LFN----------------LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 263 (760)
Q Consensus 200 ~~~----------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 263 (760)
++. +|.+|...|++++|+..|.+++..+|.++.+++.+|.++...|++++|+.+|++++.++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 41 YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 444 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCC--HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh
Q 004339 264 YPNALSMLGDLELKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 341 (760)
Q Consensus 264 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 341 (760)
++.+++.+|.+|...|. ...+...|..++.. .....+++.+|.+ +... |++++|+.+|++++.
T Consensus 121 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~-~~~~------------~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQYARYRDGLS-KLFT------------TRYEKARNSLQKVIL 185 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHHHHHHHHHH-HHHH------------HTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhHHHHHHHHH-HHHc------------cCHHHHHHHHHHHHH
Confidence 99999999999987764 45667777776543 2244567788888 7778 999999999999999
Q ss_pred hCCCCHHHHHHHHH
Q 004339 342 QHTSNLYAANGAGV 355 (760)
Q Consensus 342 ~~p~~~~~~~~la~ 355 (760)
++|+. .+...+..
T Consensus 186 l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 186 RFPST-EAQKTLDK 198 (208)
T ss_dssp TSCCH-HHHHHHHH
T ss_pred hCCCH-HHHHHHHH
Confidence 99974 33334444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=155.00 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=128.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|++++|+..|++++..+|.++.+++.+|.+|...|++++|+.+|.+++.++| .++.+|+++|.+|..+|++++|+
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-----RDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHH-HHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS-LLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
..|++++.. +|.++.+++.+|.+|...|++.+|... +++|++++|+++.++..++.++...
T Consensus 86 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 86 ECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999997 788899999999999999999887765 5999999999999998888876544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=150.17 Aligned_cols=170 Identities=11% Similarity=0.041 Sum_probs=128.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
....+++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|+.++.+++...|.++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567777888888888888888888888888888888888888888888888888888888888888777777777777
Q ss_pred HhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004339 275 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 354 (760)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 354 (760)
+...|++++|+.+|.+++...|. ...++..+|.+ +... |+++.|+.+|.+++...|.++.++..+|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVA-LDNL------------GRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHH-HHHc------------CcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 77777777777777777777665 56666667766 6666 7777777777777777777777777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Q 004339 355 VVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
.++...|++++|+.+|.+++...|
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777777777777777777666
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=167.74 Aligned_cols=235 Identities=20% Similarity=0.118 Sum_probs=181.9
Q ss_pred HHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHH
Q 004339 25 LKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDL 88 (760)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 88 (760)
...|++++|+.+|++++.. .|..+.++..+|.+|...|++++|+.+|.+++.+ .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777888888887763 2556889999999999999999999999999987 46677889999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhh
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGE---EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 164 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 164 (760)
|.++. .|+++.|+.+|.+++.+...... +....++..+|.+|...|++++|+.+|.+++.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------ 159 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT------------ 159 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------
Confidence 99998 88999999999999998522110 112788999999999999999999999999873100
Q ss_pred hhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------cCCcHHHHH
Q 004339 165 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK---------YQDYVDAYL 235 (760)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~ 235 (760)
......|....++..+|.++...|++++|+.+|.+++.. .+....++.
T Consensus 160 -----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 216 (283)
T 3edt_B 160 -----------------------RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM 216 (283)
T ss_dssp -----------------------HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHH
T ss_pred -----------------------hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 000135667889999999999999999999999999987 345556677
Q ss_pred HHHHHHHHcCCHHH------HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 236 RLAAIAKARNNLQL------SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 236 ~la~~~~~~g~~~~------A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
.++.++...+.... +..++..+....|..+.++..+|.+|...|++++|+.+|.+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 217 HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777765554333 333333333334555678999999999999999999999999875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=176.22 Aligned_cols=336 Identities=12% Similarity=0.053 Sum_probs=187.3
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+.+|..+|.++...|++.+|+..|.++ .++.++..++.++...|++++|+.+++.+++..+ ++.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHH
Confidence 3468999999999999999999999764 5677999999999999999999999999988644 467778888888
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHH
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 171 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 171 (760)
. .|++..+...+.. |+ ..+|..+|..++..|.|++|+.+|.++
T Consensus 105 ~Klg~l~e~e~f~~~-----pn------~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------------------- 148 (449)
T 1b89_A 105 AKTNRLAELEEFING-----PN------NAHIQQVGDRCYDEKMYDAAKLLYNNV------------------------- 148 (449)
T ss_dssp ----CHHHHTTTTTC-----C----------------------CTTTHHHHHHHT-------------------------
T ss_pred HHhCCHHHHHHHHcC-----Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHh-------------------------
Confidence 8 7899998877752 32 469999999999999999999999764
Q ss_pred HHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Q 004339 172 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 251 (760)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 251 (760)
..+..+|.++..+|+++.|+..|.++ .++.+|..++.++...|++..|.
T Consensus 149 --------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 --------------------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp --------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHH
Confidence 35788999999999999999999998 47899999999999999999997
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 252 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 252 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
.+...++ . ++.-...++.+|...|.+++|+.+|+.++.+.+. ....+..+|.+ |..- ..+++.+
T Consensus 198 ~~~l~L~-~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a-h~~~ftel~il-~~ky----------~p~k~~e 261 (449)
T 1b89_A 198 MCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAIL-YSKF----------KPQKMRE 261 (449)
T ss_dssp HTTTTTT-T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHH-HHTT----------CHHHHHH
T ss_pred HHHHHHH-h---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHH-HHhc----------CHHHHHH
Confidence 7766522 3 4444557889999999999999999999999866 78888888877 6543 1178888
Q ss_pred HHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------------hcCCCCCCchHHHHHHHH
Q 004339 332 AKELYTRVIVQHT-----SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA------------ASGSVFVQMPDVWINLAH 394 (760)
Q Consensus 332 A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~~~~~~la~ 394 (760)
.++.|...+.+.| .+...|..+..+|...++|+.|+......... .+ .+.++++....
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv-----~n~elyYkai~ 336 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV-----ANVELYYRAIQ 336 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC-----SSTHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhch-----hHHHHHHHHHH
Confidence 8888888888777 78889999999999999999998765443211 22 67888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 395 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
.|+ +....++..+..++.. .-+.. .....+.+.|...-...++..+..
T Consensus 337 fyl--~~~p~~l~~ll~~l~~--~ld~~----r~v~~~~~~~~l~l~~~yl~~v~~ 384 (449)
T 1b89_A 337 FYL--EFKPLLLNDLLMVLSP--RLDHT----RAVNYFSKVKQLPLVKPYLRSVQN 384 (449)
T ss_dssp HHH--HHCGGGHHHHHHHHGG--GCCHH----HHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred HHH--hcCHHHHHHHHHHHHh--ccCcH----HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 887 5556677777777752 11222 222334666777777777755543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=154.53 Aligned_cols=210 Identities=11% Similarity=0.098 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH---HHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 269 (760)
.+..++.+|..+...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45788999999999999999999999999998875 478999999999999999999999999999998875 788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHH
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 349 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 349 (760)
.+|.++...+.. .+ ..+..++.. +... |++++|+..|++++..+|++..+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~-~~~~------------~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRS-DRDP------------QQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CC------------HHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchh-hcCc------------HHHHHHHHHHHHHHHHCcCChhH
Confidence 899888765532 11 112234444 4444 89999999999999999998876
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-HHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 428 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 428 (760)
+..+..+.. +.+ ......+.+|.+|+..|++.+|+..|++++..+|..+. +.+++.+
T Consensus 133 ~~a~~~l~~-----------------~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 TDATKRLVF-----------------LKD-----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp HHHHHHHHH-----------------HHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------HHH-----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 543222111 111 22345578899999999999999999999998654332 5789999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
|.+|..+|++++|+..++.+....|++..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999998887754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=150.17 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=112.4
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhh
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 166 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 166 (760)
||.++. .|+++.|+..+.+++...|.. +..++.+|.+|+..|+|++|+.+|.+++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~-----~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------ 59 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQK-----SIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------ 59 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHH-----HTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 566666 567777777777777777775 67777888888888888888888888877
Q ss_pred hhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 004339 167 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246 (760)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 246 (760)
.+|.++.+++.+|.+|...|++++|+..|++++.++|+++.+++.+|.++...|+
T Consensus 60 -------------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 60 -------------------------VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp -------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS
T ss_pred -------------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 5667788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHH-HHHHHHHcCCChHHHHHHHHHHhhcCC
Q 004339 247 LQLSIEL-VNEALKVNGKYPNALSMLGDLELKNDD 280 (760)
Q Consensus 247 ~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 280 (760)
+.+|... ++++++++|+++.++..++.++...|+
T Consensus 115 ~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 115 TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8776654 578888888888888888888777764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=155.61 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=91.8
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ---AFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 86 (760)
.+..++.+|..++..|+|++|+..|++++...|.+ ..+++.+|.+|...|++++|+..|++++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35679999999999999999999999999999986 479999999999999999999999999999998764 788
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
.+|.++. .+.. . ...+..++..+...|++++|+..|.+++...|
T Consensus 83 ~~g~~~~~~~~~----------------~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------A-----LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhhhh----------------h-----hhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 8888875 2211 1 23455667777888999999999999998655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-17 Score=163.76 Aligned_cols=230 Identities=14% Similarity=0.079 Sum_probs=182.1
Q ss_pred HcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------CCChHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--------GKYPNALSMLG 272 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la 272 (760)
..|+++.|+.+|.+++.. +|..+.++..+|.++...|++++|+.+|.+++... |....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777777763 25678889999999999999999999999999884 45566899999
Q ss_pred HHHhhcCCHHHHHHHHHHhhhcC-----C--CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh---
Q 004339 273 DLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ--- 342 (760)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~-----~--~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 342 (760)
.++...|++++|+.+|.+++... + .....++..+|.+ |... |++++|+.+|.+++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALL-CQNQ------------GKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999873 1 1256788899999 8888 9999999999999998
Q ss_pred -----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 343 -----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 343 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
.|....++..+|.++...|++++|+.+|.+++...|. ...+....++..++.++...+.+..+..+ ..+.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYG 238 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHH
Confidence 6777889999999999999999999999999998541 22335567788888877766654433332 2222
Q ss_pred hhh-----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 414 RKF-----YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 414 ~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..+ ..+..+.++..+|.+|...|++++|+.+|++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 211 123347889999999999999999999999999763
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=140.38 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=114.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004339 338 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 338 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 417 (760)
++..++|..+.++..+|.+|+..|+|++|+.+|.+++.++| .++.+|+++|.+|..+|++++|+..|++++..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 34567899999999999999999999999999999999999 88999999999999999999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 418 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 418 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+|.++.+++.+|.+|..+|++++|+..|+++++++|++..++.+|+.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 7888999999999999999999999999999999999999999998874
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-15 Score=150.35 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=204.9
Q ss_pred HHHHcCCHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 206 LLEQIHDTV-AASVLYRLILFKYQDYVDAYLRLAAIAKARNN----------LQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 206 ~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.....|.+. +|+.++..++..+|.+..+|...+.++...+. +.+++.++..++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334566665 89999999999999999999999999988776 6899999999999999999999999999
Q ss_pred HhhcCC--HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhc-HHHHHHHHHHHHhhCCCCHHHHH
Q 004339 275 ELKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 275 ~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
+...+. +..++.++.+++...|. +..+|...+.+ +... |. ++.++.++.+++..+|.|..+|+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~v-l~~l------------~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFV-AAQA------------AVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------CcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999994 89999999999999998 89999999988 7666 77 69999999999999999999999
Q ss_pred HHHHHHHHc--------------CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-----------CCHHHHH
Q 004339 352 GAGVVLAEK--------------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-----------GNFALAM 406 (760)
Q Consensus 352 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~ 406 (760)
.++.++... +.+++++.++.+++..+| .+..+|+.+..++... +.+++++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-----~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-----NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 999999877 568999999999999999 8899998777776665 4689999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCChhHHhhHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHY---EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 464 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 464 (760)
..+..++.. .|.+..++..++.+.. ..|...++..++.+.++++|-...-|..+..
T Consensus 259 ~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 259 ESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 999999997 5666555544443332 2578889999999999999988776666544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-15 Score=149.74 Aligned_cols=253 Identities=11% Similarity=-0.071 Sum_probs=211.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..|....++..+..+....+..++|+.++.+++.++|.+..+|...+.++...| .+++++.++..++..+|++..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 445555666667777777777789999999999999999999999999999999 5999999999999999999999999
Q ss_pred HHHHHhhc-C-CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHH--------HHHHHHHHHH
Q 004339 271 LGDLELKN-D-DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--------KAKELYTRVI 340 (760)
Q Consensus 271 la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al 340 (760)
.+.++... + ++.+++.++.+++...|. +..+|...+.+ +... +.++ +++.++.+++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv-l~~l------------~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL-YSHF------------STLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH-HHHH------------HHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------ccccccchhhHHHHHHHHHHHH
Confidence 99999988 7 899999999999999988 88999998888 6666 5555 9999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH---------
Q 004339 341 VQHTSNLYAANGAGVVLAEKGQ-------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL--------- 404 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~--------- 404 (760)
..+|.|..+|+..+.++...+. +++++.++.+++..+| .+..+|+.+..++...|....
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-----HNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999887 7999999999999999 889999999999998886400
Q ss_pred -------H-HHHHHHHHhhhcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCChhHHhhHH
Q 004339 405 -------A-MKMYQNCLRKFYY-------NTDAQILLYLARTHYEAEQWQDCKKSLLRAI-HLAPSNYTLRFDAG 463 (760)
Q Consensus 405 -------A-~~~~~~al~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la 463 (760)
. -....-++..... ...+.++..|+.+|...|+..+|..+|.... +.+|-....|...+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 1 1122223332222 3568999999999999999999999999987 67886655554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=138.67 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=113.7
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+....+|+.+.++..+|..|+..|+|++|+.+|++++..+|.++.+|+.+|.+|..+|++++|+..|++++.++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 130 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 130 (760)
|+.+|.++. .|++++|+..|+++++++|.+ ..++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSN-----EEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-----HHHHHHHHHhc
Confidence 999999999 899999999999999999997 88988888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=148.71 Aligned_cols=167 Identities=16% Similarity=0.085 Sum_probs=135.1
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (760)
+|.....++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4666778999999999999999999999999999999999999999999999999999999999999999 887766666
Q ss_pred HHHc--cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 90 ELLI--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 90 ~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
.+.. .+....|+..|++++.+.|.+ +.+++.+|.++...|++++|+..|.+++..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------ 137 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDN-----FELACELAVQYNQVGRDEEALELLWNILKV------------------ 137 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------------------
Confidence 5533 224445788888888888876 788888888888888888888888888763
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILF 225 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 225 (760)
+|. .+.++..+|.++...|++++|+..|++++.
T Consensus 138 -------------------------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 -------------------------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp -------------------------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -------------------------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 333 345777888888888888888888877764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=147.11 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=127.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 004339 228 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 307 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg 307 (760)
|.....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...| ++..+..++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHH
Confidence 333445677777777777888888888777777787777888888888888888888888887777766 344443344
Q ss_pred HHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH
Q 004339 308 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 387 (760)
Q Consensus 308 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 387 (760)
.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|.. .++.
T Consensus 81 ~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 145 (176)
T 2r5s_A 81 KLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGE 145 (176)
T ss_dssp HHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTH
T ss_pred HHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHH
Confidence 3311111 233347888999999999999999999999999999999999999999888721 2366
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 388 VWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
++.++|.++..+|++++|+..|++++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 8889999999999999999999888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-15 Score=148.72 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=201.6
Q ss_pred HHHHcCCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 004339 23 VQLKLGDFR-SALTNFEKVLEIYPDNCETLKALGHIYVQLGQ----------IEKAQELLRKAAKIDPRDAQAFIDLGEL 91 (760)
Q Consensus 23 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 91 (760)
.....|.+. +|+.++..++..+|.+..+|+..+.++...+. +.+++.++..++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 335677776 79999999999999999999999999988776 6899999999999999999999999999
Q ss_pred Hc-cC--CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 92 LI-SS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 92 ~~-~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
+. .+ .+..++.++.+++.++|.+ ..+|...+.+....|. +++++.++.+++.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l~~~~~eel~~~~~~I~------------------- 173 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQAAVAPAEELAFTDSLIT------------------- 173 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------------------
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-------------------
Confidence 87 56 4899999999999999998 8999999999999998 5999999999997
Q ss_pred hhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHcCCcHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI--------------HDTVAASVLYRLILFKYQDYVDA 233 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~~l~~~p~~~~~ 233 (760)
.+|.+..+|..++.++... +.+++++.++..++..+|++..+
T Consensus 174 ------------------------~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 174 ------------------------RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp ------------------------HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred ------------------------HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 6778999999999998887 56899999999999999999999
Q ss_pred HHHHHHHHHHc-----------CCHHHHHHHHHHHHHHcCCChHHHHHHHHHH---hhcCCHHHHHHHHHHhhhcCCCCC
Q 004339 234 YLRLAAIAKAR-----------NNLQLSIELVNEALKVNGKYPNALSMLGDLE---LKNDDWVKAKETFRAASDATDGKD 299 (760)
Q Consensus 234 ~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~ 299 (760)
|+.+..++... +.+++++..+.+++...|++.-++..++.+. ...+...+...++.+++.+.|- .
T Consensus 230 W~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r 308 (331)
T 3dss_A 230 WFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-R 308 (331)
T ss_dssp HHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-G
T ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-h
Confidence 98776666555 4588999999999999999965444443332 2357788999999999999886 4
Q ss_pred hHHHHHHH
Q 004339 300 SYATLSLG 307 (760)
Q Consensus 300 ~~~~~~lg 307 (760)
...|..++
T Consensus 309 ~~~y~d~~ 316 (331)
T 3dss_A 309 AAYLDDLR 316 (331)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 44444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-15 Score=151.17 Aligned_cols=243 Identities=13% Similarity=-0.004 Sum_probs=204.7
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
|...|++..++-.+..+....+..++|+.++.++|.++|++..+|...+.++...| .+.+++.++..++..+|.+..+|
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 34455555555556666666667789999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHc-c-C-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhcccchhh
Q 004339 86 IDLGELLI-S-S-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE--------SAHQSFKDALGDGIWLT 154 (760)
Q Consensus 86 ~~la~~~~-~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~ 154 (760)
...+.++. . + ++..++.++.+++..+|++ ..+|...+.++...|.++ +++.++.+++.
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-----y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~------ 195 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-----YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR------ 195 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-----HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH------
Confidence 99999887 4 6 8999999999999999997 899999999999998888 99999999987
Q ss_pred hhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHc
Q 004339 155 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-------TVAASVLYRLILFKY 227 (760)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~ 227 (760)
.+|.+..+|...+.++...+. +++++.++.+++..+
T Consensus 196 -------------------------------------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 196 -------------------------------------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp -------------------------------------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------------------hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 677899999999999999987 799999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHc------CCChHHHHHHHHHHhhcCCH
Q 004339 228 QDYVDAYLRLAAIAKARNNL--------------------QLSIELVNEALKVN------GKYPNALSMLGDLELKNDDW 281 (760)
Q Consensus 228 p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~ 281 (760)
|.+..+|..+..++...|.. ......+..++... +.++.++..++.+|...|+.
T Consensus 239 P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 318 (349)
T 3q7a_A 239 PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV 318 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH
Confidence 99999999999998887764 22222222222222 46788999999999999999
Q ss_pred HHHHHHHHHhhhcCCC
Q 004339 282 VKAKETFRAASDATDG 297 (760)
Q Consensus 282 ~~A~~~~~~al~~~~~ 297 (760)
.+|+.+|..+.....+
T Consensus 319 ~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 319 DDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp HHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhhhCh
Confidence 9999999998755433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-15 Score=149.51 Aligned_cols=170 Identities=9% Similarity=0.043 Sum_probs=156.3
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHH
Q 004339 227 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 306 (760)
Q Consensus 227 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~l 306 (760)
.|.....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|. ........
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999884 55555555
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc-
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM- 385 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 385 (760)
+.. +... +....|+..|++++..+|+++.+++.+|.+|...|++++|+..|.+++..+| .+
T Consensus 192 ~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p-----~~~ 253 (287)
T 3qou_A 192 QIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL-----TAA 253 (287)
T ss_dssp HHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TGG
T ss_pred HHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----ccc
Confidence 555 6666 8888999999999999999999999999999999999999999999999998 55
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 386 -PDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 386 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
+.++.+++.++...|+.++|+..|++++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 889999999999999999999999998874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=155.98 Aligned_cols=209 Identities=12% Similarity=0.102 Sum_probs=171.5
Q ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHH
Q 004339 26 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ-LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDA 103 (760)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~ 103 (760)
..|++.+|..+++++.+..+.. ++. .++++.|+.+|.++ |.+|. .|++..|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4678999999999999877752 122 58999999999886 45566 7899999999
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhh
Q 004339 104 FKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 182 (760)
Q Consensus 104 ~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (760)
|.+++.+.+..+... ...++.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------------------------------ 108 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE------------------------------ 108 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 999999988754321 2568899999999999999999999999874210
Q ss_pred hhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 183 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNE 256 (760)
Q Consensus 183 l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 256 (760)
.........++.++|.+|.. |++++|+.+|++++.+.|.. ..++..+|.++...|++++|+.+|++
T Consensus 109 -------~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 109 -------NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp -------TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00112245788999999999 99999999999999887643 57889999999999999999999999
Q ss_pred HHHHcCCCh------HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 257 ALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 257 al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
++.+.|.+. .++..+|.++...|++.+|+.+|++++ ..|.
T Consensus 181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 999876542 377888999999999999999999999 8775
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=154.76 Aligned_cols=211 Identities=10% Similarity=0.028 Sum_probs=170.3
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 210 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 210 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
.|++.+|..++.++.+..+.. ++...++++.|+.+|.++ |.+|...|++.+|+.+|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence 577889999999998876642 011157888888888775 567788899999999999
Q ss_pred HhhhcCCCC-----ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHH
Q 004339 290 AASDATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGAGVVLA 358 (760)
Q Consensus 290 ~al~~~~~~-----~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~ 358 (760)
+++.+.+.. ...++..+|.+ |... |++++|+.+|++++.+.+. ...++.++|.+|.
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~-~~~~------------g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMM-LKDL------------QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-HHHT------------TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 998875421 24567788888 8887 9999999999999987542 2457889999999
Q ss_pred HcCChHHHHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHY 433 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~ 433 (760)
. |++++|+.+|++++.+.|.... .....++.++|.+|..+|+|++|+.+|++++..++.... ..+++.+|.++.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 9 9999999999999999873211 112578999999999999999999999999998654433 457889999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCChhH
Q 004339 434 EAEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 434 ~~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.+|++.+|+.+|++++ ++|.....
T Consensus 207 ~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 9999999999999999 99987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=152.43 Aligned_cols=168 Identities=14% Similarity=-0.005 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHH
Q 004339 44 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEV 122 (760)
Q Consensus 44 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 122 (760)
.|.+...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++. .|++++|+..|++++...|.. ...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~ 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-----RYQ 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-----HHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-----HHH
Confidence 36666777777777777777777777777777777777777777777766 667777777777777666643 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHH
Q 004339 123 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202 (760)
Q Consensus 123 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 202 (760)
+...+..+...+....|+..|++++. ..|+++.+++.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~-------------------------------------------~~P~~~~~~~~ 224 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVA-------------------------------------------ENPEDAALATQ 224 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH-------------------------------------------HCTTCHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHh-------------------------------------------cCCccHHHHHH
Confidence 55556666677777777777777766 55667777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 203 LARLLEQIHDTVAASVLYRLILFKYQDY--VDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
+|.++...|++++|+..|.+++..+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7777777777777777777777777776 67777777777777777777777777664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-16 Score=139.75 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=115.2
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
+++-.+-..|++++.++|+++.+++.+|.++...|++++|+.+|++++.++| .++.+|+++|.+|..+|+|++|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHH
Confidence 4455555678888999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
..|++++.. .|.++.+++++|.+|..+|++++|+.+|++++.+.|+.+
T Consensus 91 ~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999997 778899999999999999999999999999999999875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=150.00 Aligned_cols=210 Identities=10% Similarity=-0.031 Sum_probs=157.0
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH--
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL-------GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-- 85 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-- 85 (760)
..+|..|.-+ ..+++..|..+|.+++..+|..+++|..+ +.++...+++..++..+.+.+.+.|....++
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3466777776 68999999999999999999999999999 8999999999999999999999887654433
Q ss_pred -------------------HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 86 -------------------IDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 145 (760)
Q Consensus 86 -------------------~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 145 (760)
+.++.++. .|+|++|...|..++...|.. . +++.+|.+++..++|++|+.+|..
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-----~-~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH-----L-VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----H-HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----H-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33566666 677888888777777666654 4 777777788888888888887765
Q ss_pred HhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 146 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLIL 224 (760)
Q Consensus 146 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l 224 (760)
++.. .+|.. ..+++++|.++..+|++++|+.+|.+++
T Consensus 161 a~~~------------------------------------------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 161 AGKW------------------------------------------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp GGGC------------------------------------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcc------------------------------------------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5431 11111 3477777888888888888888888777
Q ss_pred HHc--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 225 FKY--QD-YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 225 ~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
... |. .+.+++.+|.++..+|+.++|...|++++..+|. ..++..|...
T Consensus 199 ~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 199 DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 433 44 5567777888888888888888888888888777 6666665443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=135.99 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=88.9
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|+++.+++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.+|..+|++++|+.+|++++.++|+++.+
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 45667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
|+.+|.+|. .|++++|+.+|++++.+.|+.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888877 778888888888888877653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=163.74 Aligned_cols=164 Identities=13% Similarity=0.125 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHH
Q 004339 27 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFK 105 (760)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~ 105 (760)
.|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..+|.++. .|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhc
Q 004339 106 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185 (760)
Q Consensus 106 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (760)
+++.+.|.+ ..+++.+|.+|...|++++|+.+|++++.
T Consensus 82 ~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------------------------- 119 (568)
T 2vsy_A 82 QASDAAPEH-----PGIALWLGHALEDAGQAEAAAAAYTRAHQ------------------------------------- 119 (568)
T ss_dssp HHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------
Confidence 999998886 78999999999999999999999999887
Q ss_pred cCCCccCCcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 004339 186 DGNHVELPWNKVTVLFNLARLLEQI---HDTVAASVLYRLILFKYQDYVDAYLRLA 238 (760)
Q Consensus 186 ~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la 238 (760)
..|.++.+++.+|.++... |++++|+..|.+++..+|.....+..++
T Consensus 120 ------~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 120 ------LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ------HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ------hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 5567788899999999999 9999999999999999998877776665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=133.72 Aligned_cols=186 Identities=17% Similarity=0.097 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccC----CHhHHHHHHHH
Q 004339 31 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS----DTGAALDAFKT 106 (760)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~A~~~~~~ 106 (760)
.+|+.+|+++... .++.+++.+|.+|...+++.+|+.+|++++.. .++.+++.||.+|..+ ++.+|+.+|++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3578889998874 78999999999999999999999999999875 5889999999998866 89999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhh
Q 004339 107 ARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 182 (760)
Q Consensus 107 al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (760)
+... .+ +.++++||.+|.. .+++.+|+.+|.+++..
T Consensus 79 A~~~--g~-----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------------------------------- 118 (212)
T 3rjv_A 79 AVEA--GS-----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------------------------------- 118 (212)
T ss_dssp HHHT--TC-----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---------------------------------
T ss_pred HHHC--CC-----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---------------------------------
Confidence 9653 33 7899999999988 88999999999999873
Q ss_pred hhccCCCccCCc--chHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-C-----CHHHH
Q 004339 183 FENDGNHVELPW--NKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-N-----NLQLS 250 (760)
Q Consensus 183 l~~~~~~~~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-----~~~~A 250 (760)
.| ..+.++++||.+|.. .+++.+|+.+|++++.. |.++.+++.||.+|... | ++.+|
T Consensus 119 ----------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A 187 (212)
T 3rjv_A 119 ----------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKA 187 (212)
T ss_dssp ----------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHH
T ss_pred ----------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 33 347899999999998 88999999999999987 66777899999998764 3 89999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHH
Q 004339 251 IELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~ 273 (760)
+.+|+++.... ++.+...++.
T Consensus 188 ~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 188 LHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHH
Confidence 99999988764 4444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-14 Score=136.14 Aligned_cols=188 Identities=14% Similarity=0.059 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC----CHHHHHHHHHH
Q 004339 215 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKAKETFRA 290 (760)
Q Consensus 215 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 290 (760)
+|+.+|.++... .++.+++.+|.+|...+++++|+.+|++++.. .++.+++.+|.+|.. + ++.+|+.+|.+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 567778887764 67888888888888888888888888888764 678888888888887 6 78888888888
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCChH
Q 004339 291 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAE----KGQFD 364 (760)
Q Consensus 291 al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~ 364 (760)
+... . ++.+++.||.+ |..... ..+++.+|+.+|++++...| .++.+++.||.+|.. .+++.
T Consensus 79 A~~~--g-~~~a~~~Lg~~-y~~g~g--------~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 79 AVEA--G-SKSGEIVLARV-LVNRQA--------GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHT--T-CHHHHHHHHHH-HTCGGG--------SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHC--C-CHHHHHHHHHH-HHcCCC--------CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 8654 2 67778888877 654100 00678888888888888776 347788888888887 77788
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 365 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-G-----NFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 365 ~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+|+.+|++++.. | .++.++++||.+|... | ++++|+.+|++++.. .+..+...++
T Consensus 147 ~A~~~~~~A~~~-~-----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~----g~~~A~~~l~ 207 (212)
T 3rjv_A 147 KASEYFKGSSSL-S-----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE----GFDTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHHHT-S-----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH----TCHHHHHHHH
T ss_pred HHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHH
Confidence 888888888776 3 4566778888887764 2 788888888888775 3344444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=161.77 Aligned_cols=165 Identities=16% Similarity=0.062 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 278 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
.|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|++++..+|++..++..+|.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~-~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADA-ELGM------------GDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67 (568)
T ss_dssp -------------------C-CHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36777788888888877776 67778888888 7777 8888888888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh--
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-- 435 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-- 435 (760)
...|++++|+.+|++++...| .++.+++++|.+|..+|++++|+..|++++.. .|.++.++..+|.++..+
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAP-----EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhc
Confidence 888888888888888888887 77888888888888888888888888888886 567788888888888888
Q ss_pred -ccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 436 -EQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 436 -g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
|++++|+..|++++..+|.+...++.++
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 8888888888888888888877766655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=133.77 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=116.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
-..|++++.++|.++.+++.+|.++...|++++|+.+|.+++...| .++.+|+++|.++..+|++++|+..|+++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+.. .|.++.+++.+|.+|..+|++++|+.+|++++.+.|+++........+
T Consensus 82 l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 82 AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 997 678899999999999999999999999999999999988765444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=144.07 Aligned_cols=230 Identities=13% Similarity=-0.003 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL-------AAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
..++..|..+ ..+++..|...|.+++..+|...++|+.+ +.++...+++.+++..+.+.+.+.|....+++.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3445555554 45666666666666666666666666666 455555555555555555555555544433333
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHH
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 350 (760)
++-+|- + +...-.......+.++.+ +... |++++|...|..++...|.+. ++
T Consensus 87 ~~g~y~---~-----------~~~~v~~r~dl~LayA~~-L~~~------------g~y~eA~~~l~~~~~~~p~~~-~~ 138 (282)
T 4f3v_A 87 IGGLYG---D-----------ITYPVTSPLAITMGFAAC-EAAQ------------GNYADAMEALEAAPVAGSEHL-VA 138 (282)
T ss_dssp CCTTTC---C-----------CEEECSSHHHHHHHHHHH-HHHH------------TCHHHHHHHHTSSCCTTCHHH-HH
T ss_pred cCCccc---c-----------cccccCCHhHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCCchH-HH
Confidence 111110 0 000001123445566677 7777 999999999999999999888 99
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CC-cHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ-MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NT-DAQILLY 427 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~-~~~~~~~ 427 (760)
+.+|.++...++|++|+.+|..+....+ +. ...+++++|.++..+|++++|+..|++++.. +. |. .+.+++.
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d----~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~ 213 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKWPD----KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWY 213 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGCSC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhccCC----cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHH
Confidence 9999999999999999999987655321 01 1458999999999999999999999999863 22 44 5789999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhH
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 462 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 462 (760)
+|.++..+|+.++|...|++++..+|. ..++..|
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 999999999999999999999999998 6665554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-14 Score=143.46 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=148.8
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|.++..++.+|..++..|+|++|+.+|.+++..+|.++.+++.+|.+|..+|++++|+..|.+++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
++. .|++++|+..|.+++.+.|.+.......++..+.. ..+.........
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------------------- 131 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--------AKKKRWNSIEER--------------------- 131 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------HHHHHHHHHHHT---------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------HHHHHHHHHHHH---------------------
Confidence 988 88999999999999999998643322222222211 111111111111
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc-CCHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQ 248 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~ 248 (760)
..|....+...++.++ .|++++|+..|..++...|.+......++.++... +.++
T Consensus 132 ----------------------~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 187 (281)
T 2c2l_A 132 ----------------------RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMA 187 (281)
T ss_dssp ----------------------CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHH
T ss_pred ----------------------HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 2233444555555544 57888888888888888887777777776666555 5567
Q ss_pred HHHHHHHHHHH
Q 004339 249 LSIELVNEALK 259 (760)
Q Consensus 249 ~A~~~~~~al~ 259 (760)
+|..+|.++..
T Consensus 188 ~a~~~f~~a~~ 198 (281)
T 2c2l_A 188 DMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHSSC
T ss_pred HHHHHHHhhhc
Confidence 77777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-16 Score=160.84 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=140.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
+++..|+..|..++...|.. +.+++.+|.+|+..|++++|+.+|.+++...|........
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~-----a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~--------------- 186 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQ-----STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE--------------- 186 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHH-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH---------------
T ss_pred eecccccchhcCCHHHHHHH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChH---------------
Confidence 46778888888888888886 8899999999999999999999999999865532110000
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
......|....+++++|.+|..+|++++|+.+|.+++.++|.++.+++.+|.++...|++++|+.+|
T Consensus 187 -------------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 253 (336)
T 1p5q_A 187 -------------EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253 (336)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0000223346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHH-HHHHHHhhh
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKA-KETFRAASD 293 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 293 (760)
.+++.++|++..++..++.++...|++.+| ...|.+++.
T Consensus 254 ~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 456666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=158.52 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=126.6
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC----------
Q 004339 277 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN---------- 346 (760)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 346 (760)
.++++.+|+..|..++...|. ...++..+|.+ |+.. |+++.|+.+|.+++.+.|.+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~-~a~~~~~~g~~-~~~~------------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 190 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE-QSTIVKERGTV-YFKE------------GKYKQALLQYKKIVSWLEYESSFSNEEAQK 190 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH-HHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred EEeecccccchhcCCHHHHHH-HHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 445666676666666665554 56777778888 7777 88888888888888888877
Q ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 347 -----LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 347 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
..+++++|.+|...|++++|+.+|.+++.+.| .++.+++++|.+|..+|++++|+..|++++.. .|.+
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~ 263 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-----NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 68899999999999999999999999999998 78899999999999999999999999999996 6777
Q ss_pred HHHHHHHHHHHHHhccHHHH-HHHHHHHHHh
Q 004339 422 AQILLYLARTHYEAEQWQDC-KKSLLRAIHL 451 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 451 (760)
..++..+|.++..+|++.+| ...|.+++..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888 4566666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=128.60 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=114.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 334 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 334 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
..|.+++..+|.+..+++.+|.++...|++++|+.+|.+++...| .++.+|+.+|.+|...|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999999999 889999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
.. .|.++.+++.+|.+|..+|++++|+.+|++++.+.|.++........+.
T Consensus 80 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 80 LM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred hc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 97 7888999999999999999999999999999999999987765555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=119.24 Aligned_cols=135 Identities=21% Similarity=0.414 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 380 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 380 (760)
.+++.+|.+ +... |+++.|+.+|.+++...|.+..++..+|.++...|++++|+.+|.+++...|
T Consensus 2 ~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-- 66 (136)
T 2fo7_A 2 EAWYNLGNA-YYKQ------------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-- 66 (136)
T ss_dssp HHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--
T ss_pred cHHHHHHHH-HHHc------------CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--
Confidence 357788888 8888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 381 VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 381 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+.+++.+|.++...|++++|+.+|.+++.. .|.++.++..+|.++...|++++|+.+|.+++..+|.+
T Consensus 67 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 67 ---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp ---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred ---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 77999999999999999999999999999996 56778999999999999999999999999999999863
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=126.72 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=105.9
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|.++.+++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|+++.+
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
++.+|.++. .|++++|+.+|++++.+.|.+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999998 899999999999999999975
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=135.67 Aligned_cols=227 Identities=13% Similarity=0.078 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
...+.+.++|..+|++.... ..+....+...++..+ . +. |+..|++.+...+....++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46677778888888876421 1222233434444433 2 22 7888888887766667777899999999
Q ss_pred cCCHHHHHHHHHHhhhcCC-CCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC------CHHHH
Q 004339 278 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 350 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 350 (760)
.|++++|+.++.+++...| .....++..++.+ +... |+++.|...++++...+|+ .+.+.
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999888765 2266777777888 8888 9999999999999888882 33344
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc--------C
Q 004339 351 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY--------Y 418 (760)
Q Consensus 351 ~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~ 418 (760)
..-|++....| ++..|..+|+.+....| + .+..+++ +++.+|++++|...++.++...| +
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 99999999999887766 4 2344444 89999999999999998877643 3
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
|.++.++.+++.+.+.+|+ .|..++.++...+|+++.+.-
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 7889999999999999998 899999999999999987653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-14 Score=126.28 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=104.3
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+++..+|.++.+++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|+++.+
T Consensus 12 ~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred HHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
++.+|.+|. .|++++|+.+|.+++.+.|.+
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 999999998 889999999999999999875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=118.93 Aligned_cols=132 Identities=29% Similarity=0.526 Sum_probs=125.2
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
.+++.+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|.+++...|.++.++..+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
.|++..|+..+.+++...|.. ..++..+|.++...|++++|+.+|.+++...|
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 789999999999999998875 78999999999999999999999999987554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=119.37 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=108.5
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
|..+..++.+|..++..|+|++|+.+|.+++..+|.++.+|+.+|.++...|++++|+..|.+++.++|.++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFE 132 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~ 132 (760)
++. .|++.+|+..|.+++.+.|.... +....++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 998 88999999999999999943211 1126777777776543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-11 Score=129.67 Aligned_cols=375 Identities=8% Similarity=-0.014 Sum_probs=242.5
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc---CCCcHHHHHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKI---DPRDAQAFID 87 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 87 (760)
+.+...|..+...+-.|+++.+..+|++++...| +...|..+.......+. .+.....|+.++.. +|.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4455666677777777888888888888888777 77788877777766653 34566677777753 6777888888
Q ss_pred HHHHHcc-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 88 LGELLIS-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 88 la~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
+...+.. ++.+.+..+|++++.+ |... ...+|.....+-.. .+...+...+......
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~---~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~~~------------- 152 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGS---LSELWKDFENFELE-LNKITGKKIVGDTLPI------------- 152 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTT---HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhh---HHHHHHHHHHHHHH-hccccHHHHHHHHhHH-------------
Confidence 8877652 3577788888888874 4321 12333333222222 1222222222221100
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHc--C-----CHHHHHHHHHHHHHHcCCcHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI--H-----DTVAASVLYRLILFKYQDYVDAYL 235 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~--g-----~~~~A~~~~~~~l~~~p~~~~~~~ 235 (760)
+..... .+..+... ........|..+...-... + .......+|++++...|..+..|+
T Consensus 153 --y~~ar~--------~y~~~~~~-----~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~ 217 (493)
T 2uy1_A 153 --FQSSFQ--------RYQQIQPL-----IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYF 217 (493)
T ss_dssp --HHHHHH--------HHHHHHHH-----HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --HHHHHH--------HHHHHHHH-----HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 000000 00000000 0001223444433332221 1 145677899999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC---------CCChHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD---------GKDSYATLSL 306 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~l 306 (760)
..+..+...|+++.|..+|.+++.. |.+..++...+... ..++ ....+........ ......|...
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 9999999999999999999999999 99988887666552 1221 1111111111110 1012344555
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhcCCCCCCc
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQM 385 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 385 (760)
+.. .... +.++.|..+|.++ ...+....+|...|.+....+ +++.|..+|..++...| +.
T Consensus 293 ~~~-~~r~------------~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-----~~ 353 (493)
T 2uy1_A 293 LNY-VLKK------------RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-----DS 353 (493)
T ss_dssp HHH-HHHH------------HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-----TC
T ss_pred HHH-HHHc------------CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-----CC
Confidence 554 4444 7899999999999 433345667777777666655 69999999999999988 77
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 386 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
+..|...+......|+.+.|..+|+++. ....++......-...|+.+.+...+++++.
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888999999999999999999872 3577788887777888999999999999885
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=119.68 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHH
Q 004339 344 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 423 (760)
Q Consensus 344 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 423 (760)
|..+..+..+|.++...|++++|+.+|.+++...| .++.+|+++|.++..+|++++|+..|++++.. .|.++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 73 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVR 73 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHH
Confidence 34567889999999999999999999999999999 88999999999999999999999999999997 778899
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCChhHHhhHHHHHHH
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVAMQK 468 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 468 (760)
+++.+|.+|..+|++++|+.+|++++.++ |.+..++..++.+...
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999988888887543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=142.46 Aligned_cols=197 Identities=10% Similarity=-0.020 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 273 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 273 (760)
|..+..++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004339 274 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 353 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 353 (760)
+|...|++++|+..|.+++.+.|.. ...+...... . -....+...........|.+..+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~i~~~l 143 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPS-A---------------LRIAKKKRWNSIEERRIHQESELHSYL 143 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHH-H---------------HHHHHHHHHHHHHHTCCCCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHH-H---------------HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999887642 1111111111 1 111122222333334566666766666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 004339 354 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-GNFALAMKMYQNCLR 414 (760)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 414 (760)
+.++ .|++++|+..|.+++...| .+......++.++... +.+++|...|.++..
T Consensus 144 ~~l~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 144 TRLI--AAERERELEECQRNHEGHE-----DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHHHHHHHTTTSGGGTTTS-----CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH--HHHHHHHHHHHHhhhcccc-----chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6654 6788888888888888877 6666666666666665 567777777777665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=126.44 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=118.1
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHcCCH--H
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV-YFAQGNF--A 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~-~~~~g~~--~ 403 (760)
|+++.|+..|.+++..+|.++.++..+|.+|...|++++|+.+|.+++...| .++.+++.+|.+ +...|++ +
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-----ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhcCCcchH
Confidence 8999999999999999999999999999999999999999999999999999 789999999999 8899999 9
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
+|+.+|.+++.. .|.++.+++.+|.+|...|++++|+.+|.+++.++|.++....
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999997 6788999999999999999999999999999999999866543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-11 Score=131.20 Aligned_cols=353 Identities=13% Similarity=0.066 Sum_probs=229.1
Q ss_pred HcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC-CHhHHHH
Q 004339 26 KLG-DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS-DTGAALD 102 (760)
Q Consensus 26 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~-~~~~A~~ 102 (760)
..| ++..|..+|++++...|. |+++.+..+|++++...| +...|..+..... .+ ..+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488899999999998887 889999999999999888 7888888877665 44 3456677
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHH
Q 004339 103 AFKTARTLLKKAGEEVPIEVLNNIGVIHF----EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178 (760)
Q Consensus 103 ~~~~al~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (760)
.|+.++.....+ .....+|...+.++. ..|+.+.+..+|++++.. |..... .....+ ..+.
T Consensus 70 ~fe~al~~vg~d--~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~-~lw~~Y--------~~fE--- 134 (493)
T 2uy1_A 70 VYEFTLGQFENY--WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLS-ELWKDF--------ENFE--- 134 (493)
T ss_dssp HHHHHHHHSTTC--TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHH-HHHHHH--------HHHH---
T ss_pred HHHHHHHHcCCC--cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHH-HHHHHH--------HHHH---
Confidence 888888763211 113688888887765 356788999999999984 311100 000000 0000
Q ss_pred hhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcC--C-----HHHH
Q 004339 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-YVDAYLRLAAIAKARN--N-----LQLS 250 (760)
Q Consensus 179 ~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g--~-----~~~A 250 (760)
.. .+ ...+ ...+-...+.+..|...|..+....+. ....|..+...-...+ - ....
T Consensus 135 --~~---------~~--~~~~---~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv 198 (493)
T 2uy1_A 135 --LE---------LN--KITG---KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRM 198 (493)
T ss_dssp --HH---------HC--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred --HH---------hc--cccH---HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHH
Confidence 00 00 0000 011111223455666666666654433 4456655554433221 1 3456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHH
Q 004339 251 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 330 (760)
Q Consensus 251 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 330 (760)
..+|++++...|..+.+|+..+..+...|+.+.|..+|.+++.. |. ....++..+.. . .. . .-+.
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~y~~~-~-e~---~--------~~~~ 263 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLYYGLV-M-DE---E--------AVYG 263 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHHHHHH-T-TC---T--------HHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHHHHhh-c-ch---h--------HHHH
Confidence 78999999999999999999999999999999999999999999 76 44444433322 0 00 0 0011
Q ss_pred HHHHHHHHH------HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-CHH
Q 004339 331 KAKELYTRV------IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG-NFA 403 (760)
Q Consensus 331 ~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g-~~~ 403 (760)
.....+... ....+....+|...+..+.+.+..+.|..+|.++ ..|. ....+|...|.+.+..+ +++
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~----~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEG----VGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSC----CCHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCC----CChHHHHHHHHHHHHHCCChH
Confidence 111110000 0001112356788888887888899999999999 3442 34678887787777767 599
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
.|..+|+.++..+ |..+..+..++......|+.+.|..+|+++
T Consensus 338 ~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 338 TPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999975 455777777888888999999999999997
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-13 Score=127.60 Aligned_cols=138 Identities=13% Similarity=0.198 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 379 (760)
...++.+|.+ ++.. |+++.|+.+|.+++ .| ++.+++.+|.++...|++++|+.+|.+++...|
T Consensus 6 ~~~~~~~g~~-~~~~------------~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~- 68 (213)
T 1hh8_A 6 AISLWNEGVL-AADK------------KDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK- 68 (213)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHH-HHHh------------CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 3456778888 8888 99999999999985 33 789999999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC--------------cHHHHHHHHHHHHHhccHHHHHHHH
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--------------DAQILLYLARTHYEAEQWQDCKKSL 445 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~ 445 (760)
.++.+++++|.+|...|++++|+..|++++...+... .+.+++.+|.+|...|++++|+.+|
T Consensus 69 ----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 69 ----HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 8899999999999999999999999999999754332 3599999999999999999999999
Q ss_pred HHHHHhCCCChhH
Q 004339 446 LRAIHLAPSNYTL 458 (760)
Q Consensus 446 ~~al~~~p~~~~~ 458 (760)
++++.+.|++...
T Consensus 145 ~~al~~~p~~~~~ 157 (213)
T 1hh8_A 145 ALATSMKSEPRHS 157 (213)
T ss_dssp HHHHTTCCSGGGG
T ss_pred HHHHHcCcccccc
Confidence 9999999987543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-12 Score=128.57 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=146.8
Q ss_pred cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC--
Q 004339 227 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-- 298 (760)
Q Consensus 227 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 298 (760)
.|.....+...+..+...|++++|+..+.+++...+.... .++.+|.++...|++++|+.+|.+++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3455566777888889999999999999999988776543 45678889999999999999999999765432
Q ss_pred ---ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCChHHHHH
Q 004339 299 ---DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 368 (760)
Q Consensus 299 ---~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~ 368 (760)
...++..+|.+ |... |+++.|+.+|.+++ ...|.+. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 14578899999 9988 99999999999999 5566643 589999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCCchHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhhcCCC
Q 004339 369 LFTQVQEAASG-SVFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNT 420 (760)
Q Consensus 369 ~~~~al~~~p~-~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 420 (760)
+|.+++.+.+. ......+.+++++|.+|..+|++++| ..+|++++..+...+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 99999988752 11223478899999999999999999 788999988753333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-12 Score=132.55 Aligned_cols=180 Identities=9% Similarity=0.005 Sum_probs=146.6
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC------ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--- 81 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 81 (760)
|.....+...+..++..|+|++|+..+.+++...|... ..++.+|.++...|++++|+.+|.+++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34445667889999999999999999999999887754 446778999999999999999999999875443
Q ss_pred ---HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhh
Q 004339 82 ---AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 155 (760)
Q Consensus 82 ---~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 155 (760)
..++..+|.+|. .|+++.|+.+|.+++.+....+... ...+++++|.+|..+|+|++|+.+|++++...+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--- 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--- 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh---
Confidence 568899999998 8899999999999997765543211 1368999999999999999999999999874210
Q ss_pred hcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHc
Q 004339 156 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA-SVLYRLILFKY 227 (760)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~ 227 (760)
.........+++++|.+|...|++++| ..+|.+++.+.
T Consensus 229 ----------------------------------~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 229 ----------------------------------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ----------------------------------TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 012233567899999999999999999 78899988643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-12 Score=126.85 Aligned_cols=189 Identities=10% Similarity=-0.027 Sum_probs=151.0
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------ChH
Q 004339 195 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YPN 266 (760)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 266 (760)
....+++.+|.++...|++++|+.++.+.+..+| .+..++..++.++..+|+++.|...++++...+|+ ...
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 3456678999999999999999999999998886 89999999999999999999999999999999883 333
Q ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh--
Q 004339 267 ALSMLGDLELKND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-- 342 (760)
Q Consensus 267 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 342 (760)
+...-+++.+..| ++..|..+|+.+....|. .......++ + +... |++++|...++.++..
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln-~-~~~~------------g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLN-L-HLQQ------------RNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH-H-HHHH------------TCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHH-H-HHHc------------CCHHHHHHHHHHHHHhcc
Confidence 4444465666666 999999999999877663 112222222 6 8888 9999999999988876
Q ss_pred --------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004339 343 --------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 414 (760)
Q Consensus 343 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (760)
+|+++.++.+++.+....|+ +|..++.++....| ++|.+.- +.+.-..|.++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P-----~hp~i~d-----------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH-----EHAFIKH-----------HQEIDAKFDELVR 304 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC-----CCHHHHH-----------HHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC-----CChHHHH-----------HHHHHHHHHHHHH
Confidence 48899999999999888997 88999999999999 6666543 3444555555555
Q ss_pred hh
Q 004339 415 KF 416 (760)
Q Consensus 415 ~~ 416 (760)
.+
T Consensus 305 ky 306 (310)
T 3mv2_B 305 KY 306 (310)
T ss_dssp TC
T ss_pred Hh
Confidence 43
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=121.29 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
.+.++.+++.+|.++...|++++|+.+|.+++.+.| .++.+|+++|.+|..+|++++|+..|++++.. .|.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 345677899999999999999999999999999999 88999999999999999999999999999997 77889
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+++.+|.+|..+|++++|+.+|++++.++|++..++++.+++
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999988777765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-13 Score=117.10 Aligned_cols=123 Identities=13% Similarity=0.202 Sum_probs=116.6
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
...|..+.+++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|.++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 135 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 135 (760)
+|.++. .|++..|+.+|.+++.+.|.. ..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSC-----KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGG-----THHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcC
Confidence 999998 889999999999999999987 7899999999988764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=116.51 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=112.1
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..+|.++..++.+|.+++..|+|++|+.+|.+++..+|.++.+++.+|.++...|+++.|+..|.+++.++|.++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
+|.++. .|++..|+..|.+++.+.|.........++..+..+....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999998 8899999999999999999954444466766666665443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-12 Score=115.69 Aligned_cols=138 Identities=9% Similarity=0.078 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 426 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 426 (760)
+..+..+|.++...|+++.|+.+|.+++...| .++.+++++|.++...|++++|+.+|.+++.. .|.++.+++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 85 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 46788899999999999999999999999998 78999999999999999999999999999997 677899999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH--HHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhh
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA--MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 503 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~ 503 (760)
.+|.++..+|++++|+.+|.+++.++|.+..++..++.+ +...+ .+..|+..+..+..++..+..
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK------------AFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH------------HHHHHHHcccchHHHhcccch
Confidence 999999999999999999999999999999888666665 33333 677777777777777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-13 Score=116.88 Aligned_cols=125 Identities=21% Similarity=0.220 Sum_probs=117.5
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
...+|..+..++.+|..++..|+++.|+.+|++++...|.++.++..+|.++...|++++|+.+|.+++..+|.++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 004339 87 DLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 136 (760)
Q Consensus 87 ~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 136 (760)
.+|.++. .|++..|+.+|.+++.+.|.. ..++..+|.++...|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDN-----ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccc-----hHHHHHHHHHHHHHhcC
Confidence 9999998 889999999999999999886 89999999999998875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-13 Score=122.83 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=107.7
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
..++..+..++.+|.+++..|+|++|+.+|++++..+|.++.+|+.+|.+|...|++++|+.+|++++.++|.++.+|+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 129 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 129 (760)
+|.++. .|++..|+.+|.+++.+.|.+ ..+++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~l~ 122 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNG-----GSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSS-----CCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHH
Confidence 999998 889999999999999999987 4555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=118.13 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 379 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 379 (760)
+..+..+|.+ ++.. |+++.|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|
T Consensus 13 ~~~~~~~a~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~- 78 (166)
T 1a17_A 13 AEELKTQAND-YFKA------------KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK- 78 (166)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHH-HHHc------------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 4567788888 8888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH--HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 380 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL--LYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 380 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
.++.+++.+|.++..+|++++|+.+|.+++.. .|.+..++ +.++..+...|++++|+..+.++..+.
T Consensus 79 ----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 79 ----KYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 78999999999999999999999999999997 55666666 455555889999999999999887653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-12 Score=113.62 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 421 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 421 (760)
...++..+|.+++..|+|++|+.+|.++++++| .++.+|.++|.+|..+|+|++|+..|++++...+....
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 355788899999999999999999999999999 88999999999999999999999999999997544322
Q ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 422 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 422 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
..+++.+|.++..+|++++|+.+|++++...|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 568999999999999999999999999999885
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-12 Score=130.13 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=117.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-C----hHHHHH
Q 004339 237 LAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D----SYATLS 305 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~----~~~~~~ 305 (760)
.+..+...|++++|+.++.+++...+..+. .+..+|.++...+++++|+.+|.+++...+.. + ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355566666777777777666665555444 23347777777778888888888888754321 2 235778
Q ss_pred HHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 306 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
+|.+ |... |+++.|+.+|++++.. .+....+++++|.+|...|++++|+.+|.+++.+.+
T Consensus 161 lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 161 IANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888 8887 8888888888888842 122344778888888888888888888888888775
Q ss_pred CC-CCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhh
Q 004339 379 GS-VFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKF 416 (760)
Q Consensus 379 ~~-~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 416 (760)
.. .....+.+++++|.+|..+|+ +++|+.+|++++..+
T Consensus 228 ~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 21 122336788888888888884 688888888888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=129.58 Aligned_cols=152 Identities=8% Similarity=-0.019 Sum_probs=100.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH--
Q 004339 270 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-- 347 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 347 (760)
..+......|.++.+...+.......+. ....+..+|.. ++.. |++..|+.+|.+++...|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNE-FFKK------------NEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp -------------CCCSGGGCCHHHHHH-HHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHTTTTCTTC
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHhccccc
Confidence 3444444555555555555443332222 34556666776 6666 777777777777777776665
Q ss_pred --------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 348 --------------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 413 (760)
Q Consensus 348 --------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (760)
.++.++|.++...|++++|+.+|.+++.+.| .++.+++.+|.+|..+|++++|+..|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----NNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6778888888888888888888888888877 678888888888888888888888888888
Q ss_pred hhhcCCCcHHHHHHHHHHHHHhccHHHHH
Q 004339 414 RKFYYNTDAQILLYLARTHYEAEQWQDCK 442 (760)
Q Consensus 414 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 442 (760)
.. .|.++.++..++.++..+|+..++.
T Consensus 150 ~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 76 5667778888888888777777665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=127.67 Aligned_cols=166 Identities=17% Similarity=0.053 Sum_probs=123.3
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.+.++.|...|.......+.. +..+..+|.+++..|+|++|+.+|.+++...|........ .+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~----- 82 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQS-----AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----ILLDK----- 82 (198)
T ss_dssp -----CCCSGGGCCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----HHHHH-----
T ss_pred hhhccccCchhhCCHHHHHHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----hHHHH-----
Confidence 456666666666665555554 7788899999999999999999999998855421100000 00000
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 253 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 253 (760)
.......+++++|.++...|++++|+.+|.+++..+|.+..+++.+|.++...|++++|+.+
T Consensus 83 ------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 83 ------------------KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 00012478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH-HHHHHh
Q 004339 254 VNEALKVNGKYPNALSMLGDLELKNDDWVKAK-ETFRAA 291 (760)
Q Consensus 254 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 291 (760)
|.+++.++|.++.++..++.++...++..++. ..|..+
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877766 334433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-13 Score=116.29 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=78.9
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-------HH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-------QA 84 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~ 84 (760)
+.+.++..+|..++..|+|++|+.+|++++.++|+++.+|..+|.+|..+|++++|+..|.+++.++|.+. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888877653 35
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKK 113 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~ 113 (760)
+..+|.++. .|++..|+.+|.+++...|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 566666666 56666666666666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=114.66 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=113.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
.|.++.+++.+|.++...|++++|+.+|.+++...| .++.+++.+|.++...|++++|+.+|++++.. .|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 84 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFI 84 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCch
Confidence 466788999999999999999999999999999998 78999999999999999999999999999996 67789
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
.+++.+|.++...|++++|+.+|.+++.++|.+..+++.++.++...
T Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 85 KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-12 Score=129.68 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=141.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HH
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQ 83 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 83 (760)
.+...+..++..|+|++|+.+|++++...|..+. .+..+|.++...|++++|+.+|.+++.+.+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3445688899999999999999999998777654 33458999999999999999999999865432 34
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE--EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
++..+|.+|. .|+++.|+.+|.+++......+. .....+++++|.+|..+|+|++|+.++.+++.+.+..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~------- 229 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------- 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-------
Confidence 7899999998 88999999999999987655421 1135689999999999999999999999999753211
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHc
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKY 227 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~ 227 (760)
...+..+.+++++|.+|..+| .+++|+.+|++++.+.
T Consensus 230 ------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 230 ------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ------------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 123345789999999999999 4799999999998653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-11 Score=132.11 Aligned_cols=211 Identities=9% Similarity=0.088 Sum_probs=173.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----------------ETLKALGHIYVQLGQIEKAQELLRKAAK 76 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 76 (760)
|.+.+..|..+...|+|.+|+..|.+++...|... .++..+|.+|...|++++|+.+|.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999887642 4689999999999999999999999988
Q ss_pred cCCCcH------HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 77 IDPRDA------QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 77 ~~p~~~------~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
..+... .+...++.++. .|+++.|+.++..++...+...... ...++..+|.+|...|+|.+|+.++..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 755432 23455677776 6799999999999999988765433 467899999999999999999999999876
Q ss_pred ccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 004339 149 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228 (760)
Q Consensus 149 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 228 (760)
... .....+....++..+|.+|...|++.+|..+|.+++...+
T Consensus 164 ~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 164 EFK-------------------------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHT-------------------------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH-------------------------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 321 1124556778999999999999999999999999987643
Q ss_pred ---Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 229 ---DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN 261 (760)
Q Consensus 229 ---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 261 (760)
.. ...+..+|.++...+++.+|..+|..++...
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 207 SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 22 3456778888889999999999999988753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=112.73 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=113.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
+|.++.++..+|.++...|+++.|+.+|.+++...| .++.++..+|.++...|++++|+.+|.+++.. .|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 80 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCH
Confidence 455678899999999999999999999999999998 78999999999999999999999999999996 67779
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+++.+|.++...|++++|+.+|.+++.+.|.++.+++.++.++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=8e-13 Score=123.81 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=115.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-Hc-cC
Q 004339 18 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LI-SS 95 (760)
Q Consensus 18 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~-~~ 95 (760)
+..+..+...|++++|+..|++++..+|.++.+++.+|.+|...|++++|+.+|.+++.++|.++.++..+|.+ +. .|
T Consensus 14 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 14 RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp STTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 33344467889999999999999999999999999999999999999999999999999999999999999999 75 78
Q ss_pred CH--hHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 96 DT--GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 96 ~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
++ ..|+.+|.+++.+.|.+ +.+++.+|.+|...|++++|+.+|.+++...|
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNE-----ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred CcchHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88 99999999999999986 89999999999999999999999999998654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=137.08 Aligned_cols=137 Identities=8% Similarity=0.011 Sum_probs=128.8
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC-CHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG-NFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g-~~~ 403 (760)
..+++++.++.+++..+|.+..+|+..++++...| ++++|+.++.++++.+| .+..+|...+.++...| .++
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-----~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-----ccccHHHHHHHHHHHcCCChH
Confidence 34899999999999999999999999999999999 66999999999999999 89999999999999999 999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEA--------------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
+++.++.+++.. +|.+..+|.+++.++..+ +.+++|++++.+|+.++|++..+|+.++.++...
T Consensus 162 ~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 162 EELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 999999999995 888999999999999986 7789999999999999999999999999998654
Q ss_pred H
Q 004339 470 S 470 (760)
Q Consensus 470 ~ 470 (760)
+
T Consensus 240 ~ 240 (567)
T 1dce_A 240 E 240 (567)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-12 Score=108.94 Aligned_cols=120 Identities=23% Similarity=0.403 Sum_probs=109.8
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc
Q 004339 343 HTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 421 (760)
Q Consensus 343 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 421 (760)
+|.. ..+++.+|.++...|+++.|+.+|.+++...| .++.+++.+|.++...|++++|+.+|++++.. .|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~ 76 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNN 76 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCcc
Confidence 4555 77899999999999999999999999999998 78999999999999999999999999999996 6777
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHH
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 469 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 469 (760)
+.+++.+|.+|...|++++|+.+|.+++.+.|.++.++.+++.++...
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999987543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-12 Score=121.71 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
....++.+|.++...|++++|+..|.+++ .| ++.+++.+|.++...|++++|+.+|.+++..+|.++.+++.+|.+|
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45578899999999999999999999996 33 7889999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCC---------------hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKD---------------SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 340 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 340 (760)
...|++++|+.+|.+++...|... ..+++.+|.+ |... |+++.|+.+|.+++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al 148 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM-YAKK------------EEWKKAEEQLALAT 148 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH-HHHc------------cCHHHHHHHHHHHH
Confidence 999999999999999999877622 2677777777 7777 88888888888888
Q ss_pred hhCCCC
Q 004339 341 VQHTSN 346 (760)
Q Consensus 341 ~~~p~~ 346 (760)
...|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 887765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-12 Score=139.79 Aligned_cols=180 Identities=11% Similarity=0.026 Sum_probs=164.8
Q ss_pred HHHHcCCH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004339 206 LLEQIHDT-VAASVLYRLILFKYQDYVDAYLRLAAIAKARNN----------LQLSIELVNEALKVNGKYPNALSMLGDL 274 (760)
Q Consensus 206 ~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~ 274 (760)
.....|.+ ++|+..+.+++..+|.+..+|...+.++...|+ +++++.++.+++..+|++..+|+..+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33445544 678999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhhcC--CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhh-cHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 275 ELKND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT-HLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 275 ~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
+...+ +|.+++.++.+++...|. +..+|...+.+ +... | .+++++.++.+++..+|.+..+|+
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~-l~~l------------~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFV-AAQA------------AVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------CCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHH-HHHc------------CCChHHHHHHHHHHHHHCCCCccHHH
Confidence 99999 779999999999999988 89999999988 7776 7 899999999999999999999999
Q ss_pred HHHHHHHHc--------------CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 004339 352 GAGVVLAEK--------------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 404 (760)
Q Consensus 352 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 404 (760)
.++.++... +.+++|+.++.+++.++| .+..+|+.++.++...+.+.+
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-----~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-----NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-----SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-----CCccHHHHHHHHHhcCCCccc
Confidence 999999875 567999999999999999 889999999999999888655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-12 Score=116.68 Aligned_cols=117 Identities=13% Similarity=0.206 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH------------------hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEA------------------ASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
+..+..+|..++..|+|.+|+..|.+++.+ .| ..+.+|+++|.+|..+|+|++|+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR-----KNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH-----THHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-----HHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 457888999999999999999999999999 55 6788999999999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-hHHhhHHHHHHHHH
Q 004339 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY-TLRFDAGVAMQKFS 470 (760)
Q Consensus 409 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~ 470 (760)
|.+++.. +|.++.+++.+|.+|..+|++++|+..|.+++.++|+++ .+...++.+.....
T Consensus 86 ~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 86 SSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999997 788899999999999999999999999999999999998 77777877765544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=112.22 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=108.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004339 341 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 420 (760)
Q Consensus 341 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 420 (760)
..+|.++..+..+|.++...|++++|+.+|.+++...| .++.+++++|.++..+|+++.|+..|++++.. .|.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~ 75 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQ 75 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Cch
Confidence 34678899999999999999999999999999999999 88999999999999999999999999999997 677
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----ChhHHhhHHHHHH
Q 004339 421 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS-----NYTLRFDAGVAMQ 467 (760)
Q Consensus 421 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~ 467 (760)
++.+++.+|.+|...|++++|+.+|.+++.+.|+ +..++..+..+..
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998 5666666666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=114.88 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcC-------CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc--
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-------SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY-- 417 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-- 417 (760)
...+..+|..+...|+|++|+..|.+++.+.|. ...|.++.+|.++|.++..+|+|++|+..|.+++.+|.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999994 11111344999999999999999999999999999621
Q ss_pred ---CCCcHHHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 418 ---YNTDAQIL----LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 418 ---~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
+|.++.+| +++|.++..+|++++|+..|++++++.|++..+.-.+..+...
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778999 9999999999999999999999999999999888888776544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-13 Score=145.06 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=125.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc---------------hHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM---------------PDVWIN 391 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------------~~~~~~ 391 (760)
+++++|+..|..++...|....++..+|.++...|+|..|+..|.+++.+.| .+ ..+|++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-----~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-----MEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-----TCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-----ccccCChHHHHHHHHHHHHHHHH
Confidence 6778888888888888999999999999999999999999999999999998 55 689999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+|.||..+|+|++|+..|.+++.. .|.++.+++.+|.+|..+|++++|+.+|++++.++|++..++.+++.++..++
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 77889999999999999999999999999999999999999999999987776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-12 Score=113.98 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=95.0
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------NCE-----TLKALGHIYVQLGQIEKAQELLRKAAKI---- 77 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 77 (760)
+..++.+|..++..|+|++|+..|+++|.++|+ +.. +|.++|.++..+|+|++|+..|.++|.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHc-cCCHhHHHHHHHHHHHHHHhcC
Q 004339 78 ---DPRDAQAF----IDLGELLI-SSDTGAALDAFKTARTLLKKAG 115 (760)
Q Consensus 78 ---~p~~~~~~----~~la~~~~-~~~~~~A~~~~~~al~~~~~~~ 115 (760)
+|+++.+| +++|.++. .|++++|+..|++++.+.|.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 99999999 99999988 8899999999999999999874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-12 Score=108.33 Aligned_cols=120 Identities=29% Similarity=0.500 Sum_probs=110.9
Q ss_pred CCCC-chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 10 PHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 10 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
+|.. +.+++.+|.++...|+++.|+.+|.+++...|.++.+++.+|.++...|++++|+.+|.+++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 004339 89 GELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 89 a~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 134 (760)
|.++. .|++..|+.+|.+++.+.|.. +.++..+|.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNN-----AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHhcc
Confidence 99988 789999999999999999886 889999999987764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=112.51 Aligned_cols=101 Identities=22% Similarity=0.179 Sum_probs=92.2
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
...++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCCHhHHHHHHHHHHHHHHhc
Q 004339 94 -SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~ 114 (760)
.|++.+|+..|++++.+.|..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 789999999999999998875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=106.00 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 425 (760)
.+.+++.+|.++...|++++|+.+|.+++...| .++.+++.+|.++...|++++|+..|++++.. .|.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 75 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHH
Confidence 356788999999999999999999999999998 78999999999999999999999999999997 67789999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+.+|.++...|++++|+.+|.+++.+.|+++.++..++.+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-12 Score=109.29 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 428 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 428 (760)
.++.+|.++...|++++|+..|.+++..+| .++.+|+.+|.++...|++++|+..|++++.. .|.++.+++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~l 91 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-----EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 467899999999999999999999999999 88999999999999999999999999999997 78889999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 429 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 429 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
|.+|...|++++|+.+|++++.++|.+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999999999998653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.5e-12 Score=119.42 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=117.5
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHh------hCCCCHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 349 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~ 349 (760)
+..|++.+|...+..+.. .|.....++..+|.+ |... |+++.|+.+|.+++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345566666663333322 232345566666666 6666 666666666666666 33345667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 423 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 423 (760)
+..+|.++...|++++|+.+|.+++.+..... .+ ....++.++|.++...|++++|+.+|++++.......+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88899999999999999999999998843110 01 23567899999999999999999999999987544444 45
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 004339 424 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 454 (760)
Q Consensus 424 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 454 (760)
++..+|.++...|++++|+.+|.+++.+...
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999987643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=118.69 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=130.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHc-cC
Q 004339 24 QLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAK------IDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~-~~ 95 (760)
++..|+|.+|...++.+.. +| ..+.++..+|.++...|++++|+.+|.+++. ..|....++..+|.++. .|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4678999999996665544 45 5688999999999999999999999999998 44556778999999988 88
Q ss_pred CHhHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
+++.|+.+|.+++.+....+.. ....++.++|.++...|++++|+.+|.+++...+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------------- 140 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-------------------- 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------------------
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--------------------
Confidence 9999999999999996654321 236778999999999999999999999998632100
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 227 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 227 (760)
........++..+|.++...|++++|+.+|.+++.+.
T Consensus 141 -----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 141 -----------------DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 0111234567889999999999999999999988764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=116.83 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=106.7
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------------------YPDNCETLKALGHIYVQLGQIEKAQELLRKA 74 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 74 (760)
.+..+..+|..++..|+|.+|+.+|.+++.. +|.++.+|+.+|.+|..+|++.+|+..|.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567899999999999999999999999998 7777899999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcC
Q 004339 75 AKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKG 134 (760)
Q Consensus 75 l~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~la~~~~~~g 134 (760)
+.++|.++.+|+.+|.++. .|+++.|+..|.+++.+.|.+ . .+...++.+....+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA-----ASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899999999999999999997 5 66777777665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=140.50 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=133.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHH
Q 004339 95 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 174 (760)
+++..|+..|..++...|.. +..++.+|.+|+..|+|..|+..|.+++.+.|........ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~-----a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~----------~~--- 309 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQ-----AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK----------ES--- 309 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------HH---
T ss_pred hhcccCcchhhcCHHHHHHH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH----------HH---
Confidence 46778888888888888886 8899999999999999999999999999865532110000 00
Q ss_pred HhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 004339 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 254 (760)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 254 (760)
....+....+++++|.+|..+|++++|+.+|.+++.++|.++.+++++|.+|..+|++++|+..|
T Consensus 310 ---------------~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~ 374 (457)
T 1kt0_A 310 ---------------KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374 (457)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00223346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHH-HHHhhh
Q 004339 255 NEALKVNGKYPNALSMLGDLELKNDDWVKAKET-FRAASD 293 (760)
Q Consensus 255 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~ 293 (760)
.+++.++|++..++..++.++...+++.+|... |.+++.
T Consensus 375 ~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 375 EKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887754 444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-11 Score=127.26 Aligned_cols=208 Identities=11% Similarity=0.073 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----------------DAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
|.+.+..|..+...|+|.+|+..|..++...|... .++..+|.+|...|++++|+.++..++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677789999999999999999999998877532 4688999999999999999999999998
Q ss_pred HcCCChH------HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC-----CChHHHHHHHHHHHHHHHhhhhcCchHHhhc
Q 004339 260 VNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATH 328 (760)
Q Consensus 260 ~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 328 (760)
..+.... +...++.++...|+++.|+.++..++...+. ....++..+|.+ |... |+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~ 150 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATL-HYQK------------KQ 150 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH-HHHH------------TC
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HHHc------------cC
Confidence 8665433 5667889999999999999999998875321 135677889999 9998 99
Q ss_pred HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHcC
Q 004339 329 LEKAKELYTRVIVQ------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV--QMPDVWINLAHVYFAQG 400 (760)
Q Consensus 329 ~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~la~~~~~~g 400 (760)
+.+|+.++..++.. .|....++..+|.+|...|++.+|..+|++++.+.+....+ ....++..+|.++...|
T Consensus 151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK 230 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 23346689999999999999999999999999887632211 12457788899999999
Q ss_pred CHHHHHHHHHHHHhhhc
Q 004339 401 NFALAMKMYQNCLRKFY 417 (760)
Q Consensus 401 ~~~~A~~~~~~al~~~~ 417 (760)
+|..|..+|..++..+.
T Consensus 231 ~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 231 DYKTAFSYFFESFESYH 247 (434)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 99999999999988653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=105.34 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=106.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+..++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|.+++..+|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 130 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 130 (760)
. .|++..|+..|.+++.+.|.+ +.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANN-----PQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHhh
Confidence 8 889999999999999999886 78888887765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=108.72 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=110.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 342 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 342 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
..|.+...++.+|.++...|++..|+.+|.+++...| .+ +.+++++|.+|...|++++|+..|.+++.. .
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~ 95 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--D 95 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--C
Confidence 4578899999999999999999999999999999988 65 899999999999999999999999999997 6
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
|.++.+++.+|.+|..+|++++|+.+|.+++.++|++..++..++.+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777999999999999999999999999999999999999988877763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=104.89 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=99.2
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHH
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--DAQAFI 86 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 86 (760)
.+|+++.+++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|. ++.++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHc-c-CCHhHHHHHHHHHHHHHHhc
Q 004339 87 DLGELLI-S-SDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 87 ~la~~~~-~-~~~~~A~~~~~~al~~~~~~ 114 (760)
.+|.++. . |++.+|+.++.+++...|..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999988 8 89999999999988877754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=111.36 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=112.1
Q ss_pred hhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 6 ~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
.+..+|..+..++.+|..++..|+|..|+.+|++++..+|++ ..+++.+|.+|...|++++|+.+|.+++.++|.++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence 345667889999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004339 83 QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 132 (760)
Q Consensus 83 ~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 132 (760)
.+++.+|.++. .|++..|+.+|.+++.+.|.+ ..++..++.+...
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~ 145 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-----KVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-----HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHhh
Confidence 99999999998 899999999999999999886 7888877776543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-11 Score=105.72 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=102.4
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---AQAFID 87 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 87 (760)
+.+++.+|.+++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+.+|.+++..+|++ +.+++.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 35689999999999999999999999999999988 899999999999999999999999999999999 889999
Q ss_pred HHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 004339 88 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 133 (760)
Q Consensus 88 la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 133 (760)
+|.++. .|+++.|+..|++++...|.+ +.+...+..+....
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGS-----DAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTS-----HHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC-----hHHHHHHHHHHHHH
Confidence 999998 889999999999999999886 55555555444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-11 Score=105.49 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CCc---
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-NTD--- 421 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~--- 421 (760)
.+.+++.+|.++...|+++.|+.+|.+++...| .++.+++.+|.++...|++++|+.+|.+++...+. +.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 456789999999999999999999999999998 78999999999999999999999999999998543 222
Q ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 422 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 422 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+.+++.+|.+|...|++++|+.+|.+++.+.| ++.++..++.++..+.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999 6888888888866554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-11 Score=104.47 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc---H
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP---DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---A 422 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 422 (760)
+++.+|.++...|++++|+..|.+++...| .++ .+++.+|.++...|++++|+..|++++.. .|.+ +
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~ 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAA 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccH
Confidence 467899999999999999999999999998 445 89999999999999999999999999997 4555 8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.+++.+|.+|..+|++++|+.+|++++...|+++.+...+..+
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8999999999999999999999999999999998776655544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-12 Score=138.43 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=117.0
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
+..+.+++.+|.+++..|+|++|+.+|++++..+|.++.++..+|.+|..+|++++|+.+|++++.++|.++.+++.+|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI--HFEKGEFESAHQSFKD 145 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~ 145 (760)
+|. .|++++|+..|++++.+.|.. ..++..++.+ +...|++++|+..+.+
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTC-----TTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 998 899999999999999999986 5788888888 8899999999999984
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-11 Score=107.99 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQV 373 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 373 (760)
..++..+|.+ |+.. |+++.|+.+|.+++...+.. ..++..+|.++...|++++|+.+|.++
T Consensus 9 ~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788888 8888 99999999999999876532 248899999999999999999999999
Q ss_pred HHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 374 QEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 374 l~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
+...+... .+....++.++|.++...|++++|+.+|++++.......+ +.++..+|.+|...|++++|+.++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99876221 1123668999999999999999999999999987543333 678889999999999999999999999
Q ss_pred HHhCCC
Q 004339 449 IHLAPS 454 (760)
Q Consensus 449 l~~~p~ 454 (760)
+.+...
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-12 Score=140.07 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=113.7
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|++++|+.+|++++..+|.+..++.++|.+|...|++++|+.+|.+++++.| .++.+++++|.+|..+|++++|+
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHH--HHHhccHHHHHHHHH-----------HHHHhCCCChhHHhhH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLART--HYEAEQWQDCKKSLL-----------RAIHLAPSNYTLRFDA 462 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~~~~~l 462 (760)
..|++++.. .|.+..++..++.+ +...|++++|+..++ +++.+.|.....++..
T Consensus 95 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 161 (477)
T 1wao_1 95 RDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED 161 (477)
T ss_dssp HHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccc
Confidence 999999997 56666777888887 899999999999999 8888888775554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=105.98 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=104.4
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHH
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-------AQA 84 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 84 (760)
..+..++.+|.+++..|+++.|+.+|.+++..+|.++.+++.+|.++...|++++|+.+|.+++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998876 889
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 134 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 134 (760)
++.+|.++. .|++..|+.+|.+++.+.|+ +.++..++.++...+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT------PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHH
Confidence 999999988 78999999999999998773 677777777765543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-11 Score=100.72 Aligned_cols=105 Identities=9% Similarity=-0.072 Sum_probs=101.3
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--ChHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSM 270 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 270 (760)
+|.++.+++.+|.++...|++++|+.+|.+++...|.+..+++.+|.++...|++++|+.+|.+++...|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhc-CCHHHHHHHHHHhhhcCCC
Q 004339 271 LGDLELKN-DDWVKAKETFRAASDATDG 297 (760)
Q Consensus 271 la~~~~~~-g~~~~A~~~~~~al~~~~~ 297 (760)
+|.++... |++++|+.+|..++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999999998876
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=106.33 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=92.0
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF----------DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~ 396 (760)
+.|++|+..|++++.++|+++.+|+++|.++...+++ ++|+..|++++.++| +.+.+|+++|.+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-----~~~~A~~~LG~ay 90 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-----KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHH
Confidence 8999999999999999999999999999999998875 599999999999999 8899999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
..+|.+ .|..+.. .|++++|+.+|++|+.++|++...+..+..+
T Consensus 91 ~~lg~l---------------~P~~~~a----------~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 91 TSFAFL---------------TPDETEA----------KHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHH---------------CCCHHHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhccc---------------Ccchhhh----------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 988754 2333222 4888899999999999999887655554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=105.53 Aligned_cols=121 Identities=9% Similarity=0.049 Sum_probs=90.1
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhhcCCCcHHHHHH
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF----------ALAMKMYQNCLRKFYYNTDAQILLY 427 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~ 427 (760)
.+.+.|++|+..|.++++++| .++.+|+++|.++..++++ ++|+..|++++.+ +|....+|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence 356779999999999999999 8999999999999999875 4888888888886 7778888888
Q ss_pred HHHHHHHhcc----HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhh
Q 004339 428 LARTHYEAEQ----WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 503 (760)
Q Consensus 428 la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l~~ 503 (760)
+|.+|..+|. +..|...|.+|+. .|..|+- ....-..+..++.....|.+++-.+..
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~--------~~~kAl~-----------l~P~~~~y~~al~~~~ka~el~~~~~~ 146 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQ--------FFQQAVD-----------EQPDNTHYLKSLEMTAKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH--------HHHHHHH-----------HCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHH--------HHHHHHH-----------hCCCCHHHHHHHHHHHhCHhccCcccc
Confidence 8888888874 3445555555544 1111111 122235777888888888888777765
Q ss_pred c
Q 004339 504 A 504 (760)
Q Consensus 504 ~ 504 (760)
.
T Consensus 147 ~ 147 (158)
T 1zu2_A 147 Q 147 (158)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=128.08 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCC
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL-----------------YAANGAGVVLAEKGQ 362 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~ 362 (760)
...+..+|.. ++.. |++..|+.+|.+++.+.|.+. .+++++|.+|...|+
T Consensus 179 a~~~~~~g~~-~~~~------------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 179 ADRRKMDGNS-LFKE------------EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHH-TCSS------------SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHH-HHhc------------CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556777877 7777 999999999999999999877 388899999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH-HHhccHHHH
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH-YEAEQWQDC 441 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~-~~~g~~~~A 441 (760)
|++|+.+|.+++.++| .++.+|+++|.+|..+|++++|+..|++++.+ .|.+..++..|+.+. ...+....+
T Consensus 246 ~~~A~~~~~~al~~~p-----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEE-----KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp CHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 78899999999999999999999999999886 567788888888884 456677888
Q ss_pred HHHHHHHHHhCCCChh
Q 004339 442 KKSLLRAIHLAPSNYT 457 (760)
Q Consensus 442 ~~~~~~al~~~p~~~~ 457 (760)
...|.+++...|.++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 8899999998887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=125.45 Aligned_cols=143 Identities=17% Similarity=0.088 Sum_probs=96.0
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----------------DAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
.+..+..++.+|.+++..|+|.+|+..|.+++...|.+. .+++++|.++...|++++|+.+|.
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677899999999999999999999999999999876 489999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHH
Q 004339 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 335 (760)
Q Consensus 256 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 335 (760)
+++.++|+++.+++.+|.+|...|++++|+.+|.+++.+.|. +..++..++.+..... +....+...
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~------------~~~~~a~~~ 321 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEK------------ALYQKQKEM 321 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 999999999999999999999999999999999999999887 6777777777622233 677888899
Q ss_pred HHHHHhhCCCCHH
Q 004339 336 YTRVIVQHTSNLY 348 (760)
Q Consensus 336 ~~~al~~~p~~~~ 348 (760)
|.+++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-10 Score=119.09 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------HhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQE----------------AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
...+..+|.++...|++++|+..|.+++. ..| ..+.+|+++|.+|..+|+|++|+.+|+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-----VALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-----HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34678899999999999999999999999 555 678999999999999999999999999
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+++.. .|.++.+++.+|.+|..+|++++|+.+|++|+.++|++..++..++.++..++
T Consensus 298 ~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 298 EALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99996 67889999999999999999999999999999999999999999999987766
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=106.33 Aligned_cols=138 Identities=22% Similarity=0.229 Sum_probs=118.3
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----
Q 004339 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---- 81 (760)
Q Consensus 12 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 81 (760)
..+.+++.+|.+++..|++++|+.+|.+++...|.. ..++..+|.++...|++++|+.+|.+++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345678999999999999999999999999876542 2589999999999999999999999999875442
Q ss_pred --HHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004339 82 --AQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 149 (760)
Q Consensus 82 --~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 149 (760)
..++..+|.++. .|+++.|+.++.+++.+.+..+.. ....++..+|.+|...|++++|+.++.+++..
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567889999988 889999999999999987664321 12567899999999999999999999999874
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=122.75 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=115.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLE----------------IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 77 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 77 (760)
+..++.+|..++..|+|++|+.+|++++. .+|.++.+|..+|.+|..+|++++|+.+|.+++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34588999999999999999999999998 77788899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004339 78 DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 142 (760)
Q Consensus 78 ~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 142 (760)
+|.++.+++.+|.+|. .+++++|+..|++++.+.|.+ ..++..++.++...+++.++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-----~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-----KAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 889999999999999999986 89999999999999988877654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-11 Score=101.44 Aligned_cols=93 Identities=12% Similarity=0.288 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHHHHHH---hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 360 KGQFDVSKDLFTQVQEA---ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 360 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
.|++++|+.+|.+++.. +| .++.+++++|.+|..+|++++|+..|++++.. .|.++.+++.+|.+|..+|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK-----DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcC
Confidence 46666677777777766 45 56667777777777777777777777777765 4555677777777777777
Q ss_pred cHHHHHHHHHHHHHhCCCChhHH
Q 004339 437 QWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++++|+.+|.+++...|+++.+.
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHH
Confidence 77777777777777777666544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=99.48 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=85.0
Q ss_pred HcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcC
Q 004339 132 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 211 (760)
Q Consensus 132 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g 211 (760)
.+|++++|+.+|.+++..++ .+|.++.+++.+|.+|...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~----------------------------------------~~p~~~~~~~~lg~~~~~~~ 41 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL----------------------------------------QGKDLAECYLGLGSTFRTLG 41 (117)
T ss_dssp -----CCCHHHHHHHHSSCC----------------------------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHcCC----------------------------------------CCccHHHHHHHHHHHHHHcC
Confidence 36889999999999987321 15778899999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHH
Q 004339 212 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 270 (760)
Q Consensus 212 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 270 (760)
++++|+.+|.+++..+|+++.+++.+|.++...|++++|+.+|.+++...|+++.+...
T Consensus 42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=93.53 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 331 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 410 (760)
Q Consensus 331 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (760)
.|+..|.+++..+|.++.+++.+|.+|...|++++|+.+|.+++...| .++.+|+.+|.+|...|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777 667777777777777777777777777
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhc
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAE 436 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g 436 (760)
+++...+...+......+...+..+|
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 77776544444444444444444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=87.41 Aligned_cols=84 Identities=33% Similarity=0.569 Sum_probs=76.5
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (760)
+|.++.+++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|.+++.++|.++.++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHc
Q 004339 90 ELLI 93 (760)
Q Consensus 90 ~~~~ 93 (760)
.++.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-09 Score=90.06 Aligned_cols=83 Identities=25% Similarity=0.280 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTL 110 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~ 110 (760)
.|+..|++++..+|.++.+++.+|.+|...|++++|+.+|++++.++|.++.+|+.+|.++. .|++..|+..|.+++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999988 78999999999999999
Q ss_pred HHhc
Q 004339 111 LKKA 114 (760)
Q Consensus 111 ~~~~ 114 (760)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.8e-10 Score=94.73 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=75.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFI 86 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 86 (760)
.+.+++.+|.+++..|+|++|+.+|++++..+|.++.+++.+|.++..+|++++|+..|.+++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999988 55566
Q ss_pred HHHHHHc-cCCHhHH
Q 004339 87 DLGELLI-SSDTGAA 100 (760)
Q Consensus 87 ~la~~~~-~~~~~~A 100 (760)
.+|.++. .|++..|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 6665554 3444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-09 Score=87.18 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 343 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
+|+++.+++.+|.+|...|++++|+.+|.+++.++| .++.+|+.+|.+|..+|++++|+..|++++...+...+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 577777777777777777777777777777777777 667777777777777777777777777777765444555
Q ss_pred HHHHHHHHHHHHhc
Q 004339 423 QILLYLARTHYEAE 436 (760)
Q Consensus 423 ~~~~~la~~~~~~g 436 (760)
.....+..++...+
T Consensus 78 ~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 78 KDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc
Confidence 55555554444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=82.78 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=80.5
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 272 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 272 (760)
.|..+.+++.+|.++...|++++|+.+|.+++...|.+..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q 004339 273 DLELKND 279 (760)
Q Consensus 273 ~~~~~~g 279 (760)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=92.30 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALS 269 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 269 (760)
.+.+++.+|.++...|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHh
Q 004339 270 MLGDLELKNDDWVKAKETFRAA 291 (760)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~a 291 (760)
.+|.++...|++..|+..|.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999988887777666544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-08 Score=87.97 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=105.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 402 (760)
+++.+|+.+|+++....+.... +|.+|...+.+++|+.+|+++.+. .++.++++||.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 7899999999999998754443 999999999999999999999986 459999999999999 8999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
.+|+.+|+++... .++.+++.||.+|.. .+++.+|+.+|++|.... ++.+.++|+
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999985 679999999999999 899999999999999884 445555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-09 Score=86.77 Aligned_cols=72 Identities=28% Similarity=0.398 Sum_probs=56.9
Q ss_pred CCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004339 9 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80 (760)
Q Consensus 9 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 80 (760)
.+|+++.+++.+|.+|+..|+|++|+.+|++++..+|.++.+|+.+|.+|...|++++|+..|++++.+.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 467788888888888888888888888888888888888888888888888888888888888888877654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.5e-09 Score=86.22 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=82.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 95 (760)
.+.+|.+++..|++++|+..|++++..+|.++. +++.+|.+|...|++++|+.+|++++.++|+++.++.. +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------~ 75 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------K 75 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------H
Confidence 578999999999999999999999999999999 99999999999999999999999999999999988744 4
Q ss_pred CHhHHHHHHHHHHHHHHhc
Q 004339 96 DTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~ 114 (760)
.+..++..|.+++...|..
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5667788888888888865
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-08 Score=106.27 Aligned_cols=126 Identities=10% Similarity=0.042 Sum_probs=107.7
Q ss_pred hcHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQ-----HTSN---LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.+ .|++ ..++++||.+|..+|+|++|+.++.+++.+.. +..+|.....+.+||.+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999975 3444 45789999999999999999999999998854 44555677889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 396 YFAQGNFALAMKMYQNCLRKF---YYNTD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
|..+|+|++|+.+|++|+... ..+.+ ..+...++.++..+|.+.+|...|.++.+..
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 23333 6667799999999999999999999987654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-06 Score=82.34 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=93.3
Q ss_pred CCcchHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQ---I--H------DTVAASVLYRLILFKYQD--YVDAYLRLAAIAKAR-----NNLQLSIEL 253 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~ 253 (760)
..|.++.++++.|.+... . | ....|...++++++++|. +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 567889999998887754 1 2 357899999999999999 456999999999995 999999999
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHhhc-CCHHHHHHHHHHhhhcCCC
Q 004339 254 VNEALKVNGKY-PNALSMLGDLELKN-DDWVKAKETFRAASDATDG 297 (760)
Q Consensus 254 ~~~al~~~p~~-~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 297 (760)
|++++.++|+. ..+++.+|..++.. |++..|..++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 99999999999885 9999999999999998765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=83.26 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
++.+|+.+|.++...... .+. +|.+ |... +.++.|+.+|+++... .++.+++.||.+|..
T Consensus 10 d~~~A~~~~~~aa~~g~~---~a~--lg~~-y~~g------------~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM---FGC--LSLV-SNSQ------------INKQKLFQYLSKACEL--NSGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT---THH--HHHH-TCTT------------SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH---hhh--HHHH-HHcC------------CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHc
Confidence 566777777777665432 222 6666 6555 5666677777777765 567777777777776
Q ss_pred ----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 360 ----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 360 ----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
.+++.+|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++... .++.+...|+
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~A~~~l~ 136 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGL-------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL----GSEDACGILN 136 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHC-
T ss_pred CCCCCccHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHh
Confidence 67788888888887765 347778888888887 77888888888888774 4455554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-08 Score=81.73 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD-VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+.+|.++...|++++|+..|.+++...| .++. +++++|.+|..+|++++|+..|++++.. .|.++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-----VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-----STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--
Confidence 3456666666777777777777766666 5566 6666777777777777777777766665 3444444322
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
+.+.+|+..|.+++..+|+++
T Consensus 75 ------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ------HHHHHHHHHHCCTTHHHHCCS
T ss_pred ------HHHHHHHHHHHHHhccCcccc
Confidence 455566666666666665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-07 Score=99.19 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=110.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHH
Q 004339 125 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 204 (760)
Q Consensus 125 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la 204 (760)
..+..+..+|+|++|+..|++++.+.. ...-..+|....++.+||
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~-----------------------------------~~lg~~Hp~~a~~~~nLa 358 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQE-----------------------------------PVFADTNLYVLRLLSIAS 358 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHT-----------------------------------TTBCTTSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHH-----------------------------------HhcCCCCHHHHHHHHHHH
Confidence 344557789999999999999987310 111125667778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChH---HH
Q 004339 205 RLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPN---AL 268 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~ 268 (760)
.+|..+|+|++|+.++++++.+ +|.....+.+||.+|..+|++++|+.+|.+++.+ .|++|. +.
T Consensus 359 ~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 359 EVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999965 3455667999999999999999999999999976 466665 56
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
..++.++..++.+.+|...|.++.+.
T Consensus 439 ~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 439 AMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999888653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=76.23 Aligned_cols=73 Identities=10% Similarity=-0.041 Sum_probs=67.0
Q ss_pred CCCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 004339 10 PHEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (760)
+|+++..++.+|.+++..++ ..+|..+|++++..+|+++.+++.+|.+++..|+|.+|+.+|++++..+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999987766 79999999999999999999999999999999999999999999999998744
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=92.51 Aligned_cols=139 Identities=11% Similarity=-0.057 Sum_probs=109.5
Q ss_pred cCCCCCchh--hhhHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-------HHHHH-HHHHH-
Q 004339 8 NKPHEFIFP--YYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-------IEKAQ-ELLRK- 73 (760)
Q Consensus 8 ~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~~~~- 73 (760)
...|.++.+ +|..|..++..+. +.+|+.+|+++++++|+++.++..++.+|..... ...++ ..+..
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 345665554 5678888887665 5889999999999999999999999888863211 11111 12222
Q ss_pred -HHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 74 -AAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 74 -al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
++..+|.++.++..++.++. .|+++.|+..+++++.++|. ...|..+|.++...|++++|+..|.+++.++|
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23567899999999998777 89999999999999999864 67889999999999999999999999999776
Q ss_pred h
Q 004339 152 W 152 (760)
Q Consensus 152 ~ 152 (760)
.
T Consensus 342 ~ 342 (372)
T 3ly7_A 342 G 342 (372)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.2e-07 Score=91.11 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=100.2
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---C-ChHHHHHHHHHHH------HHhcCCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK---G-QFDVSKDLFTQVQ------EAASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al------~~~p~~~~~~~~~~~~~la~~~ 396 (760)
..+.+|+.+|+++++++|+++.++..++.+|... + ........+..++ ...| ..+.++..+|.++
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~-----~~a~~~~alal~~ 287 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN-----NLSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT-----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC-----cCHHHHHHHHHHH
Confidence 6779999999999999999999999998888632 1 1111222222222 2334 7899999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...|+++.|+..+++++.+ + ++...+..+|.++...|++++|+..|.+|+.++|..+.
T Consensus 288 l~~gd~d~A~~~l~rAl~L--n-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDL--E-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HhCCCHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999998 3 45778899999999999999999999999999998864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.9e-06 Score=79.06 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004339 214 VAASVLYRLILFKYQDYVDAYLRLAAIAKAR---------------------NNLQLSIELVNEALKVNGKYPNALSMLG 272 (760)
Q Consensus 214 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------------------g~~~~A~~~~~~al~~~p~~~~~~~~la 272 (760)
.-.+.+++-++..+|.+.......+..|..- ..+..|..+|.++... ...+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 3456778888889999987766655554321 1233455555554431 1111
Q ss_pred HHHhhcCCHHHHHH-----HHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC--
Q 004339 273 DLELKNDDWVKAKE-----TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-- 345 (760)
Q Consensus 273 ~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 345 (760)
+......+.+++. -+..++......++..++..|.+ +...+...+.. ....+....|...++++++++|+
T Consensus 121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg-~~Al~~l~~A~a~lerAleLDP~~~ 197 (301)
T 3u64_A 121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLG-SALPDTVHAAVMMLERACDLWPSYQ 197 (301)
T ss_dssp -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTT-SCCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred -HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCC-hHHHHhHHHHHHHHHHHHHhCCCcc
Confidence 1111222332222 23444544444477777777766 54433322111 11226678899999999999999
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhcC
Q 004339 346 NLYAANGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-GNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 346 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 418 (760)
+..+|..+|.+|... |+.++|..+|++++.++|+ .+..+++.+|..++.. |+++.|..++++++..-+.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 566999999999884 8999999999999999982 2488889999988884 8899999999999986433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.2e-07 Score=74.82 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-----NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
++.-.+.+|..++..|+|..|+.+|+.|+..... ...+.++..||.+|+++|+++.|+.++++++.+.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4677889999999999999999999999997632 24589999999999999999999999999999999999999
Q ss_pred hhHHHH
Q 004339 460 FDAGVA 465 (760)
Q Consensus 460 ~~la~~ 465 (760)
.|++.+
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 998854
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-05 Score=86.69 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=136.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC-CC
Q 004339 267 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS 345 (760)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~ 345 (760)
++..+-..+.+.|++.+|+.+|..+....-..+..+|..+-.+ +.... ........+.++.|..+|....... +.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~---~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAE---AATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCC---CCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCC---chhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 3455566777888888888888888776544466666666554 33210 0000011266899999999987653 34
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 425 (760)
+..+|+.+...|...|++++|..+|..+....- . -+..+|..+...|...|++++|..+|...... .-.++..+|
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~---~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI---Q-PRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C-CccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 788999999999999999999999999987531 1 35788999999999999999999999999886 466788999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
..|-.+|.+.|+.++|..+|++.....
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-05 Score=83.41 Aligned_cols=137 Identities=11% Similarity=-0.006 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 004339 279 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVL 357 (760)
Q Consensus 279 g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 357 (760)
+....|..+|..+....-.++..+|..+... |... |+++.|..+|..+.... +.+..+|+.+...|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~ 150 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF 150 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHH
Confidence 3467888889888876655588899999988 9998 99999999999988753 34788999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 004339 358 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433 (760)
Q Consensus 358 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 433 (760)
...|++++|..+|..+....- . -+...|..+..+|...|++++|..+|++..... ..++..++..+-..+.
T Consensus 151 ~~~g~~~~A~~l~~~M~~~G~---~-Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVESEV---V-PEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC---C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCC---C-CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHh
Confidence 999999999999999987542 1 357889999999999999999999999998864 3445555555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.7e-06 Score=74.59 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHH
Q 004339 364 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 364 ~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~ 439 (760)
..+...|...+...| .+..+.+++|+++...+ ++.+++.+|+.++... .| ...+++|+||..|+++|+|.
T Consensus 15 ~~~~~~y~~e~~~~~-----~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 445566666666555 56888888888888877 6668888888888851 13 34888999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 440 DCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 440 ~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+|+.++++++++.|++..+..-...+-
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999998887766555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-06 Score=70.91 Aligned_cols=77 Identities=25% Similarity=0.277 Sum_probs=69.0
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 85 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (760)
++.-++.+|..++..|+|..|+.+|+.++... +..+.++..+|.+++++|+++.|+.++++++.+.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35568999999999999999999999999863 34578999999999999999999999999999999999887
Q ss_pred HHHH
Q 004339 86 IDLG 89 (760)
Q Consensus 86 ~~la 89 (760)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.2e-06 Score=67.75 Aligned_cols=70 Identities=21% Similarity=-0.007 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 004339 194 WNKVTVLFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 263 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 263 (760)
|.++.++..+|.+++..++ .++|..+|.+++..+|+++.+++.+|.+++..|+|.+|+.++++++..+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4445555555555544433 455555555555555555555555555555555555555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=74.79 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCCCchhhhhHHHHHHHcC---CHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 10 PHEFIFPYYGLGQVQLKLG---DFRSALTNFEKVLEIY-P-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 10 ~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+|.+..+.|.+|.++.+.+ ++.+++.+|+.+++.+ | .+.++++.+|..++++|+|.+|+.+++.++++.|++..+
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3444444555555555444 3344555555555444 3 234445555555555555555555555555555544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=88.38 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=70.4
Q ss_pred HcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHHHHH
Q 004339 359 EKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF---YYNTD---AQILLYLA 429 (760)
Q Consensus 359 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~la 429 (760)
..|+|++|+.+|++++.+.. +..+|....++.+||.+|..+|+|++|+.+|++++..+ ..+.+ ...+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35678888888888887654 22333445667788888888888888888888887753 12222 56677888
Q ss_pred HHHHHhccHHHHHHHHHHHHHh-----CCCChhH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHL-----APSNYTL 458 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 458 (760)
.+|..+|++++|+.+|++|+.+ .|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888765 4555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.5e-06 Score=87.47 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=78.7
Q ss_pred hcHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQ-----HTSNL---YAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.+ .|+++ .++++||.+|..+|+|++|+.++++++.+.- +..+|.....+++||.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 8899999999999984 45554 4788999999999999999999999998753 44555677889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhh
Q 004339 396 YFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~ 416 (760)
|..+|+|++|+.+|++|+..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999874
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.9e-06 Score=87.03 Aligned_cols=104 Identities=8% Similarity=0.095 Sum_probs=83.2
Q ss_pred HHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHH
Q 004339 356 VLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF---YYNTD---AQILL 426 (760)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~ 426 (760)
-+...|+|++|+..|++++.+.. +..+|....++.++|.+|..+|+|++|+.++++++..+ ..+.+ ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35578999999999999998754 22333456788999999999999999999999999864 22333 66788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCChhHH
Q 004339 427 YLARTHYEAEQWQDCKKSLLRAIHL-----APSNYTLR 459 (760)
Q Consensus 427 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 459 (760)
+||.+|..+|++++|+.+|++|+.+ .|+++.+.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 9999999999999999999999875 56666443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=7.4e-06 Score=87.24 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=87.6
Q ss_pred hcHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhc---CCCCCCchHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQ-----HTSNL---YAANGAGVVLAEKGQFDVSKDLFTQVQEAAS---GSVFVQMPDVWINLAHV 395 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~la~~ 395 (760)
|++++|+.+|++++.+ .|+++ .++.++|.+|..+|+|++|+.++.+++.+.. +..+|.....+++||.+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 8999999999999975 34554 4789999999999999999999999998753 44455667789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhh---cCCCc---HHHHHHHHHHHHHh
Q 004339 396 YFAQGNFALAMKMYQNCLRKF---YYNTD---AQILLYLARTHYEA 435 (760)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~la~~~~~~ 435 (760)
|..+|++++|+.+|++|+..+ ..+++ ..++..|+.+...+
T Consensus 381 ~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 23444 44445566665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00011 Score=61.92 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhhcC-C-CcHHHHHHHHHHHHHhcc
Q 004339 363 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYY-N-TDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 363 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~-~-~~~~~~~~la~~~~~~g~ 437 (760)
...+...|...+...+ ....+.+++|+++....+... +|.+++..+.. . | ...+.+++||..++++|+
T Consensus 17 l~~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 3445556666666555 568888899999888887666 88888888774 3 2 348899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 438 WQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
|.+|+.++..+|++.|+|..+..-...+
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999998776544444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00033 Score=60.04 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=92.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDT------VAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 257 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 257 (760)
..|.+++.|..+.......|+. +.-+..|++++..-|. ++..|+..|.. ...++.+.|..+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6789999999999999999999 8999999999987763 45667777755 5669999999999999
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 258 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 258 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+.++...+.+|...|....++|+...|..++.+++.+.|.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 9988888899999999999999999999999999999887
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0012 Score=56.69 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=58.3
Q ss_pred HcCCChHHHHHHHHHHhhcCCH------HHHHHHHHHhhhcCCCCCh-------HHHHHHHHHHHHHHHhhhhcCchHHh
Q 004339 260 VNGKYPNALSMLGDLELKNDDW------VKAKETFRAASDATDGKDS-------YATLSLGNWNYFAALRNEKRAPKLEA 326 (760)
Q Consensus 260 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~-------~~~~~lg~~~y~~~~~~~~~~~~~~~ 326 (760)
+.|++++.|..+.......|+. +.-+..|++++...|+... +.|+..+. +...
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~--~~ei------------ 73 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE--LKAI------------ 73 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH--HHHH------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH--HHHh------------
Confidence 4677888887777777777777 7777888888876665211 11111111 1122
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
++.++|...|+.++..+...+.+|...|..-.++|+...|..++.+++...|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 4555555555555555444555555555555555555555555555555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00025 Score=62.40 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=41.9
Q ss_pred hcHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 004339 327 THLEKAKELYTRVIVQHTSN---------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 377 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 377 (760)
+.|+.|+-....++....++ ..++..+|.+++..|+|..|...|++++...
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 89999999988877654322 2378889999999999999999999998765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00072 Score=56.85 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHc-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHH
Q 004339 194 WNKVTVLFNLARLLEQIHDTVA---ASVLYRLILFKY-Q-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 194 p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 268 (760)
+....+.|++|.++....+... ++.+++.++..+ | ..-++++.||..+++.|+|..|+.+++.++...|.+..+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3567788888888888877766 888888888776 4 5667888888888999999999999999999989888877
Q ss_pred HHHHHH
Q 004339 269 SMLGDL 274 (760)
Q Consensus 269 ~~la~~ 274 (760)
.....+
T Consensus 112 ~Lk~~i 117 (126)
T 1nzn_A 112 ELERLI 117 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0014 Score=57.76 Aligned_cols=118 Identities=12% Similarity=0.001 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC---C-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF---V-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----- 418 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----- 418 (760)
++++.-...+...|.|+.|+-....++.+...+.. | ....+++.+|.+++..|+|..|...|++++.....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45556667778899999999999998877541110 0 12347899999999999999999999999876421
Q ss_pred ------------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHH
Q 004339 419 ------------------NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 466 (760)
Q Consensus 419 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 466 (760)
+.+.++.+.++.||.++|++.+|+..++..-. .-..+.+...||.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 11247889999999999999999999775311 112344555555544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0034 Score=52.88 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=67.5
Q ss_pred CchHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 384 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
-.+.+.+++|++++...+. ..++.+++..+.. .| ...+.++.||..++++|+|..|+.+...++++.|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3588999999999998854 5799999998874 44 3489999999999999999999999999999999998776
Q ss_pred hhHHHH
Q 004339 460 FDAGVA 465 (760)
Q Consensus 460 ~~la~~ 465 (760)
.-...+
T Consensus 116 ~Lk~~I 121 (134)
T 3o48_A 116 ALKSMV 121 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.05 Score=56.17 Aligned_cols=259 Identities=11% Similarity=0.043 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCChH----
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA-----YLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPN---- 266 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~---- 266 (760)
-.+.+.||.+|...|++++-..++.......+..+.+ ...+...+.. -+..+.-+.++..+++-..+.-.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999988888776544433322 2233333322 34455556666666654322212
Q ss_pred --HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCC-C----hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 267 --ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 267 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
+-..+|.+|+..|+|.+|...+.+++...... + ...+..-..+ |... +++.++...|.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~a 165 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHHH
Confidence 23378999999999999999998888743221 1 2233334444 6666 8999999999888
Q ss_pred HhhC---CCCHH----HHHHHHHHHH-HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH-
Q 004339 340 IVQH---TSNLY----AANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ- 410 (760)
Q Consensus 340 l~~~---p~~~~----~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~- 410 (760)
.... +.++. ....-|.++. ..++|..|..+|-.++........|....+...++.|-+..++..+--..+.
T Consensus 166 ~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~ 245 (394)
T 3txn_A 166 RTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSG 245 (394)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHS
T ss_pred HhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcc
Confidence 6542 22332 3445678888 8999999999999998766422111223345556666666665322222221
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 411 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 411 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.....+ ..+....+..+..+ +..+++......+...-..-..++.+.-++..++....
T Consensus 246 ~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir 303 (394)
T 3txn_A 246 KLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML 303 (394)
T ss_dssp HHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH
T ss_pred cccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 212222 22334445555554 45566655555544432223345555444555444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0094 Score=50.88 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 384 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
..+.+.+++|+++....+. ..++.+++..+.. .| ...+.++.||..++++|+|..|+.+...+|++.|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4588999999999998854 5789999998884 44 4589999999999999999999999999999999998766
Q ss_pred hhHHHH
Q 004339 460 FDAGVA 465 (760)
Q Consensus 460 ~~la~~ 465 (760)
.-...+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0086 Score=51.10 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCCchhhhhHHHHHHHcCCH---HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
+..+.+.|.+|.+++...+. .+++.+++.++...|. .-+.++.||..++++|+|..|+.+.+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44677888888888887754 4688888888888884 5678888999999999999999999999999998876654
Q ss_pred H
Q 004339 87 D 87 (760)
Q Consensus 87 ~ 87 (760)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0065 Score=51.15 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=64.1
Q ss_pred CchhhhhHHHHHHHcCCH---HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
.+.+.|.+|.++++..+. ..++.+++.+++..|. .-+.++.||..++++|+|..|+.+...++.+.|.+..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567888999998888754 5789999999998884 478999999999999999999999999999999988765443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.11 Score=53.75 Aligned_cols=103 Identities=10% Similarity=-0.021 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC-Cc----HHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD----AQI 424 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~----~~~ 424 (760)
..+|.+|...|+|.+|..++.+++....... .....+++..-..+|..++++..+...|.++....... .+ +.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3689999999999999999999998764211 11235678888999999999999999999998764221 22 556
Q ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHhCC
Q 004339 425 LLYLARTHY-EAEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 425 ~~~la~~~~-~~g~~~~A~~~~~~al~~~p 453 (760)
...-|.++. ..++|..|..+|-.++.-..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 667888888 89999999999999986544
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.35 Score=42.17 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=28.5
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCC
Q 004339 293 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 345 (760)
Q Consensus 293 ~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 345 (760)
...|+-..+.....+.+ |+.. |..++...+|..+-..+|.
T Consensus 201 n~iPGiGSY~va~aa~~-yf~l------------g~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 201 EHVPGIGSYFISNAARR-YFNL------------GMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TSTTTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSTT
T ss_pred HhCCCchhHHHHHHHHH-HHhc------------ccchhHHHHHHHHHhcCCC
Confidence 34454344444556666 7777 9999999999988888885
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.22 E-value=0.61 Score=53.36 Aligned_cols=243 Identities=15% Similarity=0.072 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---C---cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-
Q 004339 197 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---D---YV----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 265 (760)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 265 (760)
..+++.+|.++...+ ..++.++...+.... . .. .+.+.||.++.-.++ +++...+..++..+....
T Consensus 413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 345666666666555 357777777765432 0 11 244566666655554 345666666665332111
Q ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH--HHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh
Q 004339 266 -NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 342 (760)
Q Consensus 266 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 342 (760)
.+-+.+|.++...|+-+.....+..+...... ... +-..||.+ .. |+.+.+-.+.+.+...
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll---~~------------g~~e~~~~li~~L~~~ 553 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALI---NY------------GRQELADDLITKMLAS 553 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHH---TT------------TCGGGGHHHHHHHHHC
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhh---hC------------CChHHHHHHHHHHHhC
Confidence 24456777777777765555555555442211 111 12223322 22 5555555554444332
Q ss_pred CCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 343 HTSNLYA----ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 343 ~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
.++.. ...+|..|...|+...-..++..+.. ++. ++..-.--+|..++..|+.+.+...+... ..
T Consensus 554 --~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d~~----d~VRraAViaLGlI~~g~~e~v~rlv~~L----~~ 622 (963)
T 4ady_A 554 --DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSN----DDVRRAAVIALGFVLLRDYTTVPRIVQLL----SK 622 (963)
T ss_dssp --SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSC----HHHHHHHHHHHHHHTSSSCSSHHHHTTTG----GG
T ss_pred --CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCc----HHHHHHHHHHHHhhccCCHHHHHHHHHHH----Hh
Confidence 23332 33466667778875444445555553 221 22333333344444456554333333322 23
Q ss_pred CCcHHHHHHHHHHHHHh--cc-HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHH
Q 004339 419 NTDAQILLYLARTHYEA--EQ-WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 471 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~--g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 471 (760)
..++.+.+..+.++-.. |. ..+|+..+....+ ++ +..+..+-...+...+.
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~-d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP-VDFVRQAAMIALSMILI 676 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS-SHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC-CHHHHHHHHHHHHHHhc
Confidence 34555555444444332 22 2567777777653 33 44455555555555554
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.13 Score=44.81 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=85.6
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
.+++.++-+-.-. .|..+..-..++.++.-.|.|..++-++... +.....+.-+.||...++|..|+
T Consensus 16 ~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l----------NT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 16 RDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHKL----------NTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp TCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHTC----------CBHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHhc----------chHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544332222 3444456667888999999999988766432 55777888899999999999999
Q ss_pred HHHHHHHh---------------hhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 407 KMYQNCLR---------------KFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 407 ~~~~~al~---------------~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
..++..+. .+-+|.+ .-.+..+|.++.+.|+.++|+.+|.......|-.+
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 99999993 1234455 44566789999999999999999999999887543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.097 Score=55.41 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc----
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 421 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 421 (760)
-..++..+|..|...|++..|..+|.++.....+.. ....+++.+..+++..+++..+..++.++.......++
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 344788899999999999999999999998876432 45789999999999999999999999999887655555
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
..+..+.|.++...++|..|...|-.++......
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 3455577888888999999999999888765444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.18 Score=57.88 Aligned_cols=104 Identities=9% Similarity=-0.056 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHH
Q 004339 347 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 426 (760)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 426 (760)
...++.+...|++.|+.++|..+|..+......... -+...|..|...|++.|++++|..+|...... .-.+|..+|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHH
Confidence 346778888889999999999998775532100000 35788888889999999999999999988876 4567788888
Q ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHhC
Q 004339 427 YLARTHYEAEQ-WQDCKKSLLRAIHLA 452 (760)
Q Consensus 427 ~la~~~~~~g~-~~~A~~~~~~al~~~ 452 (760)
.+-.++.+.|+ .+.|..+|+.+....
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888888887 467888888887754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.076 Score=59.63 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=89.1
Q ss_pred CCCchhhhhHHHHHHH--cCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHhc-CCHHHHHHHHHHHHh--------
Q 004339 11 HEFIFPYYGLGQVQLK--LGD-FRSALTNFEKVLEIYPDNCETLKALGHI--YVQL-GQIEKAQELLRKAAK-------- 76 (760)
Q Consensus 11 p~~~~~~~~la~~~~~--~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~-g~~~~A~~~~~~al~-------- 76 (760)
|+.+..|+.-|.+-+- .|. ++.|+.+|++....+|.....+. .+.+ .... .+--+|+.++.++++
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 5555555554443332 344 68899999999999997653332 2222 2222 344567777777663
Q ss_pred cCCCcH----------HHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 77 IDPRDA----------QAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 145 (760)
Q Consensus 77 ~~p~~~----------~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 145 (760)
+.+.+. ..+..-+..+. .++|+-|+.+.++|+...|.. ...|+.|+.+|..+|+|+.|+-.++.
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-----F~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS-----FESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-----hHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 222222 23333444455 689999999999999999997 89999999999999999999987765
Q ss_pred H
Q 004339 146 A 146 (760)
Q Consensus 146 a 146 (760)
+
T Consensus 397 c 397 (754)
T 4gns_B 397 M 397 (754)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.088 Score=59.13 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
.+..-+..+...|+|+-|+.+.++++...| .....|+.|+.||+.+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-----seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELAL-----DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455557777789999999999999999999 88999999999999999999999876655
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.31 E-value=1.8 Score=45.85 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-hcCCCc----
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK-FYYNTD---- 421 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~---- 421 (760)
.....|+.+|...|++.+|..++..+..-.-+.. ...-..++.....+|...++|..|..++.++... +..+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3456789999999999999999999875432211 0122567888899999999999999999998643 223333
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004339 422 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 451 (760)
Q Consensus 422 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 451 (760)
..++...|.++...++|.+|..+|..++..
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 567778999999999999999999998865
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=4.9 Score=44.20 Aligned_cols=116 Identities=9% Similarity=-0.022 Sum_probs=78.1
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAAN----GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
.+.+.|...|.......+-+..... .+|.-+...+...++...+..+....+ +.. ....++...+..|++
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-----STS-LIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-----CHH-HHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-----ChH-HHHHHHHHHHHCCCH
Confidence 6888999999887654433333222 233333344446677888887654332 222 333344445677999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..|..+|..+-.. ........|++|+++..+|+..+|..+|.++..
T Consensus 302 ~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999765442 223588899999999999999999999999985
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.058 Score=57.09 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=65.0
Q ss_pred hcHHHHHHHHHHHH-----------hhCCCCHHHHHHHHHHHHHcCChHHHH----------HHHHHHHHHhc-CCCCCC
Q 004339 327 THLEKAKELYTRVI-----------VQHTSNLYAANGAGVVLAEKGQFDVSK----------DLFTQVQEAAS-GSVFVQ 384 (760)
Q Consensus 327 ~~~~~A~~~~~~al-----------~~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~~p-~~~~~~ 384 (760)
+++++|..+-..++ .+++-...+|+.++.++...|...... ..+..++...- ......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 67777777665544 123445667888888888888766532 23333333321 111224
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC--Cc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChh
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 457 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 457 (760)
...++..+-..|+..+.|++|..+..++. ||.+ .+ ...++++|+++.-.++|.+|..+|..|+...|.+..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 46788889999999999999999999884 3432 22 677889999999999999999999999999987653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.88 E-value=4.6 Score=42.57 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HcCCChH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALK---VNGKYPN 266 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 266 (760)
...+...|+.+|...|++.+|..++..+....- .-...++....+|...+++..|..++.++.. ..+..+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 456778899999999999999999998864321 1256788888999999999999999988743 2333443
Q ss_pred ----HHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 267 ----ALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 267 ----~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
.+...|.++...++|.+|-.+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5667888899999999999999888764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.35 E-value=5.1 Score=45.92 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=101.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHc-CCCh----HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC---C------CChHHHHHH
Q 004339 241 AKARNNLQLSIELVNEALKVN-GKYP----NALSMLGDLELKNDDWVKAKETFRAASDATD---G------KDSYATLSL 306 (760)
Q Consensus 241 ~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~------~~~~~~~~l 306 (760)
....|+.++++..+...+... ..++ .+.+.+|.++...++ .++.++...+.... . ....+.+.|
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345677778888887766422 2222 366777777776664 67887777765432 0 011234455
Q ss_pred HHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCC
Q 004339 307 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 384 (760)
Q Consensus 307 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 384 (760)
|.+ |... ++ +++...+..++..+... ..+.+.+|.++.-.|+-+....++..+.+... +
T Consensus 462 Gla-~~GS------------~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~-----e 522 (963)
T 4ady_A 462 GLA-AMGS------------AN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQH-----G 522 (963)
T ss_dssp HHH-STTC------------CC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSC-----H
T ss_pred HHH-hcCC------------CC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCc-----H
Confidence 555 4432 22 45666666666543321 13556677777777876666666665554221 2
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHH----HHHHHHHHHHHhccHHHHHHHHHHHH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ----ILLYLARTHYEAEQWQDCKKSLLRAI 449 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al 449 (760)
...-...+|..++..|+.+.+-.+.+..... .++. +.+.+|.+|...|+...-...+..+.
T Consensus 523 ~vrR~aalgLGll~~g~~e~~~~li~~L~~~----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 523 NITRGLAVGLALINYGRQELADDLITKMLAS----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 2222334444555667776666555554432 2332 33456667777788644333555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.30 E-value=2.4 Score=48.81 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=66.4
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHH
Q 004339 205 RLLEQIHDTVAASV-LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 283 (760)
Q Consensus 205 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 283 (760)
......++++.|.. ++.. -|+ ......++..+...|.++.|+...+ ++... ..+.+..|+++.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888876 4411 110 1223666777788888888876552 23222 234467788999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHH
Q 004339 284 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339 (760)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 339 (760)
|.++.+.. .+...|..+|.. +... ++++.|..+|.++
T Consensus 671 A~~~~~~~------~~~~~W~~la~~-al~~------------~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDA-SLQR------------FNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHH-HHHT------------TCHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHH-HHHc------------CCHHHHHHHHHHc
Confidence 88876432 267788889988 8888 9999999998875
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.94 Score=52.11 Aligned_cols=109 Identities=13% Similarity=-0.020 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004339 300 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 375 (760)
Q Consensus 300 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 375 (760)
..++..+-+. |... |++++|..+|...... ...+...|+.|...|++.|++++|..+|..+..
T Consensus 127 ~~TynaLIdg-lcK~------------G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKC-CLLT------------DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566777777 8888 9999999999775432 345788999999999999999999999999987
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhhcCCCcHHHHH
Q 004339 376 AASGSVFVQMPDVWINLAHVYFAQGNF-ALAMKMYQNCLRKFYYNTDAQILL 426 (760)
Q Consensus 376 ~~p~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~ 426 (760)
..- . -+...|..+..++.+.|+. +.|..+|+.....- -.+|..++.
T Consensus 194 ~G~---~-PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~ 240 (1134)
T 3spa_A 194 AGL---T-PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTA 240 (1134)
T ss_dssp TTC---C-CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHH
T ss_pred cCC---C-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcc
Confidence 542 1 3588899999999999985 78899999999873 444544444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.29 Score=46.83 Aligned_cols=119 Identities=12% Similarity=0.053 Sum_probs=83.4
Q ss_pred hhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 326 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
.|.+..|+......++.+|.+......+..+++-.|+++.|..-++.+.+++| .....-. .|.. .-.|
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p-----~~~~~a~----~yr~---lI~a 77 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-----EYLPGAS----QLRH---LVKA 77 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-----GGHHHHH----HHHH---HHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----hhhHHHH----HHHH---HHHH
Confidence 39999999999999999999999999999999999999999999999999998 3322211 1110 0111
Q ss_pred HHHHHHHHhh------hcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Q 004339 406 MKMYQNCLRK------FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 456 (760)
Q Consensus 406 ~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 456 (760)
...=..++.- +..|........-+......|+.+.|...-.+|++..|..+
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1111112211 11122233344455566678999999999999999988654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.82 Score=40.91 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=69.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 406 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 406 (760)
|+++.|.++.+.+ ++...|..||......|++.-|..+|.++-... .+..+|...|+.+.-.
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------------~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFD-------------KLSFLYLVTGDVNKLS 80 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------------HHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------------HHHHHHHHhCCHHHHH
Confidence 9999999887764 678899999999999999999999998874332 4455566677776655
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 407 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 407 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
.+-+.+... ++. .....+++.+|++++++..|.+.
T Consensus 81 kla~iA~~~----g~~---n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTR----EDF---GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHT----TCH---HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHC----ccH---HHHHHHHHHcCCHHHHHHHHHHC
Confidence 555555442 222 22334567789999999888654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=12 Score=41.09 Aligned_cols=358 Identities=9% Similarity=-0.025 Sum_probs=174.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHH-
Q 004339 36 NFEKVLEIYPDNCETLKALGHIY---VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTL- 110 (760)
Q Consensus 36 ~~~~al~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~- 110 (760)
-+...+..+|+.+..-....... .+.+++..-+.+|.. .|.+....+.++.... .|+...|......+...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 45555677888876655444433 334566655554432 3667776666666655 67766665544443321
Q ss_pred -------------HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhH
Q 004339 111 -------------LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 177 (760)
Q Consensus 111 -------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (760)
.... .......+.......+..|+...|......+ . +... ..... ...+. ...
T Consensus 133 ~~~p~~c~~l~~~~~~~-g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l-~--~~~~--------~~a~~-~~al~-~~p 198 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRAS-GKQDPLAYLERIRLAMKAGNTGLVTVLAGQM-P--ADYQ--------TIASA-IISLA-NNP 198 (618)
T ss_dssp SCCCTHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-C--GGGH--------HHHHH-HHHHH-HCG
T ss_pred CCCcHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC-C--HHHH--------HHHHH-HHHHH-hCh
Confidence 1111 1112333333445555566666665544322 0 0000 00000 00000 000
Q ss_pred HhhhhhhccCCCccCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHH----HHHHHHHHHcCCHHHHHH
Q 004339 178 QLFHRFENDGNHVELPWNK-VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY----LRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 178 ~~~~~l~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----~~la~~~~~~g~~~~A~~ 252 (760)
.....+.. . ..+.. ....+.++.......+.+.|...|.......+...... ..++.-+...+...++..
T Consensus 199 ~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~ 273 (618)
T 1qsa_A 199 NTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (618)
T ss_dssp GGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred HhHHHHHh---c--cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 00000000 0 01111 11233344444455688899999888765443333222 223333333443556777
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 253 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
.+.......+ +....-.++...+..|++..|..+|..+...... .....+-+|.+ +... |+..+|
T Consensus 274 ~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra-~~~~------------g~~~~a 338 (618)
T 1qsa_A 274 WRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADL-LLER------------GREAEA 338 (618)
T ss_dssp HHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHH-HHHT------------TCHHHH
T ss_pred HHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHH-HHHc------------CCHHHH
Confidence 7777654333 3333333444456779999999999876653222 55666667777 6666 999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 333 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
..+|..+.. +.+.+. .++. ..+|..-. ... ....+.....-.....+..+..++..|....|...+..+
T Consensus 339 ~~~~~~~a~--~~~fYg--~lAa--~~Lg~~~~-~~~----~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~ 407 (618)
T 1qsa_A 339 KEILHQLMQ--QRGFYP--MVAA--QRIGEEYE-LKI----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (618)
T ss_dssp HHHHHHHHT--SCSHHH--HHHH--HHTTCCCC-CCC----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCChHH--HHHH--HHcCCCCC-CCC----CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHH
Confidence 999999875 333322 1211 12232100 000 000000000000012245566777788888888777777
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 446 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 446 (760)
+... .+. -...++.+....|.+..++....
T Consensus 408 ~~~~-~~~---~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 408 VKSK-SKT---EQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HTTC-CHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcC-CHH---HHHHHHHHHHHCCChHHHHHHHH
Confidence 7653 432 23355666667777776665443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=3.6 Score=39.38 Aligned_cols=57 Identities=30% Similarity=0.321 Sum_probs=33.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhc
Q 004339 58 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKA 114 (760)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~ 114 (760)
+++.|.++.|+..+...++.+|.+......+..++. .|+++.|...++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 344556666666666666666666666555555555 556666666666666665553
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.44 Score=50.89 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004339 50 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 128 (760)
Q Consensus 50 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 128 (760)
.+..||.+......+..|..+|.+|+.+.|.+..++..||.+.. .|+.-.|+-+|.+++...... +.+..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf-----~~a~~nL~~ 228 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-----PAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-----HHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC-----hhHHHHHHH
Confidence 45555555555555555666666666666665555655655555 455555555555555433222 445555554
Q ss_pred HHH
Q 004339 129 IHF 131 (760)
Q Consensus 129 ~~~ 131 (760)
++.
T Consensus 229 ~f~ 231 (497)
T 1ya0_A 229 ALS 231 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.67 E-value=1.2 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004339 46 DNCETLKALGHIYVQLGQIEKAQELLRKA 74 (760)
Q Consensus 46 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 74 (760)
++...|..+|..+...|+++.|..+|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34555555555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.58 E-value=5 Score=35.83 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=20.6
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004339 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 256 (760)
Q Consensus 209 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 256 (760)
..|+++.|..+...+ ++...|..||......|++.-|..+|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 445555555444332 3344455555555555555555444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.45 E-value=1.5 Score=52.82 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=88.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------------
Q 004339 19 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------------------- 77 (760)
Q Consensus 19 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------- 77 (760)
.+...++..+.++-|.. .+...|.++...+.+|.+++..|++++|..+|.++..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 45566777787766654 44567888888899999999999999999999887321
Q ss_pred --CCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 78 --DPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 146 (760)
Q Consensus 78 --~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 146 (760)
....+..|..+..++. .+.++.++.....|+...+..........|..+-..+...|+|++|...+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 0112345566666666 67888889888888876543321112346778888888899999988777543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=3.3 Score=42.81 Aligned_cols=60 Identities=7% Similarity=-0.105 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 258 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 258 (760)
+...++..+...|++..|+..+..++..+|.+-.++..+..++...|+..+|+..|..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555566666666666666666666666666666666666666666666666665543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=2.2 Score=44.18 Aligned_cols=92 Identities=13% Similarity=-0.048 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCC--------c--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004339 202 NLARLLEQIHDTVAASVLYRLILFKYQD--------Y--------------VDAYLRLAAIAKARNNLQLSIELVNEALK 259 (760)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~~l~~~p~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 259 (760)
..|......|+...|...+..++.+... . ..+...++..+...|++.+|+..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445678999999999999876421 1 12344566778899999999999999999
Q ss_pred HcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 004339 260 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 293 (760)
Q Consensus 260 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 293 (760)
.+|-+..++..+..+|...|+..+|+..|..+..
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.98 Score=47.61 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC--CChH----
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYPN---- 266 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~---- 266 (760)
...++..+|..|...|+++.|.+.|.++..... .-.+.++.+..++...+++..+..++.++..... .++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 345788999999999999999999999887543 4567889999999999999999999999876632 2333
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 267 ALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 267 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
.....|.+++..++|..|..+|-.++.....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 4456688889999999999999888776544
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=1.1 Score=47.74 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 004339 199 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 276 (760)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 276 (760)
.+..||.+......+..|..+|.+++.+.|.+...+..||.+....|+.-.|+-+|-+++......+.+..++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 556678888888888888888888888888888888888888888888888888888888766666777777766654
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.21 E-value=2 Score=45.53 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=57.4
Q ss_pred cCCHhHHHHHHHHHH--HHHH----hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhh
Q 004339 94 SSDTGAALDAFKTAR--TLLK----KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 167 (760)
Q Consensus 94 ~~~~~~A~~~~~~al--~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 167 (760)
.+++++|..+-...+ .... ..-+...+.+|+.++.+|...|+.............+.|.
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~--------------- 213 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST--------------- 213 (523)
T ss_dssp ------------------------------------------------------CHHHHHHHHTH---------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH---------------
Confidence 458888887776554 1211 1112334667777777777777766543332222211000
Q ss_pred hhHHHHHHhHHhhhhhhccCCCcc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-------HHHHHHHHH
Q 004339 168 SASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------VDAYLRLAA 239 (760)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~ 239 (760)
+..++.. ..+. .......++..+-+.|...+.|+.|..+..++. .|.. ...++.+|.
T Consensus 214 -----------Ll~~~rt--a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GR 278 (523)
T 4b4t_S 214 -----------MMKFLKI--ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSK 278 (523)
T ss_dssp -----------HHHHHHH--CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHH--HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHH
Confidence 0000000 0011 222456677888999999999999999999885 4422 345667888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCC
Q 004339 240 IAKARNNLQLSIELVNEALKVNGKY 264 (760)
Q Consensus 240 ~~~~~g~~~~A~~~~~~al~~~p~~ 264 (760)
++.-.++|.+|..++..++...|.+
T Consensus 279 I~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 279 INAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHhccHHHHHHHHHHHHHhCCcc
Confidence 8889999999999988888877654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.99 E-value=5.6 Score=47.74 Aligned_cols=170 Identities=11% Similarity=-0.034 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChH--HHHHHHHHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFA 313 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~lg~~~y~~ 313 (760)
.+...+...+.++-+.. .+...|.++...+.+|.+++..|++++|..+|.++.......... ....+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~---- 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI---- 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH----
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc----
Confidence 34455666677665543 445678888888999999999999999999998875432111100 00000000
Q ss_pred HHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 004339 314 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 393 (760)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la 393 (760)
..........+..|..+..++...|.++.++.....|++..+..........|.++-
T Consensus 889 -----------------------~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iF 945 (1139)
T 4fhn_B 889 -----------------------AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETL 945 (1139)
T ss_dssp -----------------------HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred -----------------------cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 000011112334556666777788888888888888887764211000123677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHH
Q 004339 394 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 439 (760)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 439 (760)
..+...|+|++|...+-..-. .......+..|-..++..|...
T Consensus 946 k~~L~l~~ye~Ay~aL~~~pd---~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 946 KTACAAGKFDAAHVALMVLST---TPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHCCSGGGGHHHHHHHH---SSSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHhhCCHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhCCChh
Confidence 888888888888776643322 1222455555555555554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.50 E-value=21 Score=35.49 Aligned_cols=143 Identities=12% Similarity=0.021 Sum_probs=75.4
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHH
Q 004339 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 272 (760)
Q Consensus 193 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 272 (760)
.-.++..+..+|..|...+++.+|..+|- +. ..+.+..+..+-.-+...+ .|.....+...+
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQD---------------ESHTAPLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHH
Confidence 34678899999999999999999988873 21 1112233322222222222 123333333333
Q ss_pred -HHHhhcCCHHHHHHHHHHhhh----cCCCC---------------ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHH
Q 004339 273 -DLELKNDDWVKAKETFRAASD----ATDGK---------------DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 332 (760)
Q Consensus 273 -~~~~~~g~~~~A~~~~~~al~----~~~~~---------------~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 332 (760)
..|+..++...|...+...+. ..|.- ....+++...+ ++..+. +... ..|..-
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~l-Lllt~q--~~~~----~lF~~L 266 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISM-LLLSVQ--KGSP----DLFRQL 266 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHH-HHHHHH--SCCH----HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHH-HHHHHh--cCCH----HHHHHH
Confidence 335677788877775544332 11210 01222233332 222211 1110 245556
Q ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Q 004339 333 KELYTRVIVQHT-SNLYAANGAGVVLAEK 360 (760)
Q Consensus 333 ~~~~~~al~~~p-~~~~~~~~la~~~~~~ 360 (760)
...|...+..+| .....+..+|.+|+..
T Consensus 267 ~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 267 KSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 666777777777 6777778888888744
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.24 E-value=32 Score=34.22 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004339 262 GKYPNALSMLGDLELKNDDWVKAKETFR 289 (760)
Q Consensus 262 p~~~~~~~~la~~~~~~g~~~~A~~~~~ 289 (760)
-.++.++..+|..|...+++.+|..+|-
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3678899999999999999999999983
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=83.03 E-value=0.00016 Score=74.55 Aligned_cols=372 Identities=12% Similarity=0.070 Sum_probs=206.8
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004339 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 90 (760)
Q Consensus 11 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 90 (760)
-+.+.+|..+|.+++..+...+|+..|-++ +++..+.....+..+.|.++.=+.++..+-+.-. .+..-..|..
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ 124 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIF 124 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHH
Confidence 345778999999999999999999888654 4444566667777788999988888877765421 2222222333
Q ss_pred HHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhh
Q 004339 91 LLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 169 (760)
Q Consensus 91 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 169 (760)
+|. .++..+-.+.+ . .|+ ..-....|.-++..|.|+.|.-+|..+-.... +.......
T Consensus 125 ayAk~~rL~elEefl----~-~~N------~A~iq~VGDrcf~e~lYeAAKilys~isN~ak---LAstLV~L------- 183 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N-GPN------NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR---LASTLVHL------- 183 (624)
T ss_dssp HHHTSCSSSTTTSTT----S-CCS------SSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT---TSSSSSSC-------
T ss_pred HHHhhCcHHHHHHHH----c-CCC------cccHHHHHHHHHHccCHHHHHHHHHhCccHHH---HHHHHHHH-------
Confidence 333 22211100000 0 011 12235678888888888888777755433110 00000000
Q ss_pred HHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Q 004339 170 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 249 (760)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 249 (760)
..+..++... ...+++.+|-....++...+.+.-|..+--.++- +|+.. -.+...|...|.+++
T Consensus 184 -------~~yq~AVdaA-----rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~E 247 (624)
T 3lvg_A 184 -------GEYQAAVDGA-----RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEE 247 (624)
T ss_dssp -------SGGGSSTTTT-----TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTT
T ss_pred -------HHHHHHHHHH-----HhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHH
Confidence 0111111111 2234566788888888888988888766655553 44432 345566788999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC--CCC-----ChHHHHHHHHHHHHHHHhhhhcCc
Q 004339 250 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT--DGK-----DSYATLSLGNWNYFAALRNEKRAP 322 (760)
Q Consensus 250 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-----~~~~~~~lg~~~y~~~~~~~~~~~ 322 (760)
-+.+++.++.+..-+...+..||.+|.+- .+++-.++++...... |.. ....|..+..+ |..-
T Consensus 248 LIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL-Y~~y-------- 317 (624)
T 3lvg_A 248 LITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL-YDKY-------- 317 (624)
T ss_dssp STTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH-HHHH--------
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHH-Hhcc--------
Confidence 99999999988888899999999888765 4666666665433321 110 22334455555 5544
Q ss_pred hHHhhcHHHHHHHH-------------HHHHhhCCCCHHHHH---------------HHHHHHHHcCChHHHHHHHHHHH
Q 004339 323 KLEATHLEKAKELY-------------TRVIVQHTSNLYAAN---------------GAGVVLAEKGQFDVSKDLFTQVQ 374 (760)
Q Consensus 323 ~~~~~~~~~A~~~~-------------~~al~~~p~~~~~~~---------------~la~~~~~~g~~~~A~~~~~~al 374 (760)
..++.|.... ..++..- .|..+++ .|-.++.-.=+....+.+|.+.-
T Consensus 318 ----dE~DnA~ltMi~h~~~Aw~h~~Fkdii~KV-aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~ 392 (624)
T 3lvg_A 318 ----EEYDNAIITMMNHPTDAWKEGQFKDIITKV-ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 392 (624)
T ss_dssp ----TCHHHHHHTTTSCHHHHCCGGGGTTTGGGC-SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTT
T ss_pred ----hhHHHHHHHHHhCChhhccHHHHHHHHHHc-chHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcC
Confidence 5555443211 1111111 1222222 22222333334455555555432
Q ss_pred HHh---c---CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC------------CCcHHHHHHHHHHHHHhc
Q 004339 375 EAA---S---GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY------------NTDAQILLYLARTHYEAE 436 (760)
Q Consensus 375 ~~~---p---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~la~~~~~~g 436 (760)
.+. | .....++..+.-.+-.+|+...+|+. ++..+..+.+ ..-.+....-+.+|.+.+
T Consensus 393 ~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~----LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~ 468 (624)
T 3lvg_A 393 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA----LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNN 468 (624)
T ss_dssp CGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH----HHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTC
T ss_pred CchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH----HHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcc
Confidence 211 1 00112456667777788888888753 3334433211 122445555677777788
Q ss_pred cHHHHHHH
Q 004339 437 QWQDCKKS 444 (760)
Q Consensus 437 ~~~~A~~~ 444 (760)
+|.+|+..
T Consensus 469 rw~qsi~l 476 (624)
T 3lvg_A 469 RWKQSVEL 476 (624)
T ss_dssp HHHHHSSC
T ss_pred cHHHHHHH
Confidence 88887765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=82.92 E-value=6.4e-05 Score=77.48 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 125 (760)
.+.+|..+|.+++..+...+|+..|-++ -+|. .+.....+.. .|.|+.-+.++.-+-+.... +.+=..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke------~~IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKARE------SYVETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS------TTTTHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc------cccHHH
Confidence 4667788888888888777777776543 2333 2333333333 45666666555544433211 223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHH
Q 004339 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 205 (760)
Q Consensus 126 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~ 205 (760)
|..+|.+.++..+-.. .+ ..|+. .-....|.
T Consensus 122 Li~ayAk~~rL~elEe-----------------------------------------------fl-~~~N~-A~iq~VGD 152 (624)
T 3lvg_A 122 LIFALAKTNRLAELEE-----------------------------------------------FI-NGPNN-AHIQQVGD 152 (624)
T ss_dssp HHHHHHTSCSSSTTTS-----------------------------------------------TT-SCCSS-SCTHHHHH
T ss_pred HHHHHHhhCcHHHHHH-----------------------------------------------HH-cCCCc-ccHHHHHH
Confidence 4455555554322111 11 12222 22345677
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHH
Q 004339 206 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 285 (760)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 285 (760)
-++..|.|+.|.-+|..+ .-|..|+.++..+|+|..|+...+++ +++.+|-.....+...+++.-|.
T Consensus 153 rcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHH
Confidence 888888888887666532 22557788888888888887765543 56677888888888888888777
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004339 286 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 365 (760)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (760)
.+--.++-.... - -.+... |-.. |.|++-+.+++.++.+...+...+..||.+|.+- +.++
T Consensus 220 icGLniIvhade-L----~elv~~-YE~~------------G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 220 MCGLHIVVHADE-L----EELINY-YQDR------------GYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHHHHCCSSC-C----SGGGSS-SSTT------------CCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HhcchhcccHHH-H----HHHHHH-HHhC------------CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHH
Confidence 766555543221 1 012222 4444 8889999999999988888888888899888754 3444
Q ss_pred HHHHHHH---------HHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 004339 366 SKDLFTQ---------VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408 (760)
Q Consensus 366 A~~~~~~---------al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (760)
-.+.++. ++... .....|-.+..+|..-.+|+.|+..
T Consensus 281 lmEHlklf~sriNipKvirac------E~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAA------EQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHH------TTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHH------HHHhhHHHHHHHHhcchhHHHHHHH
Confidence 4444432 22222 3456788888899999999877643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.78 E-value=42 Score=33.04 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.0
Q ss_pred hcHHHHHHHHHHHHh
Q 004339 327 THLEKAKELYTRVIV 341 (760)
Q Consensus 327 ~~~~~A~~~~~~al~ 341 (760)
++...|..+|.....
T Consensus 202 ~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 202 SNISFAHESKDIFLE 216 (312)
T ss_dssp TBHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 760 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-24 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-21 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 8e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 9e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.004 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 4e-05 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 8e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (255), Expect = 4e-24
Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 40/403 (9%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 139
A+A+ +LG + LK + I + + +G ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 140 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH---------- 189
+ + + L + K A K ++ F ++
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 190 -----------VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 238
V L N + NL +L++ A Y L ++ + LA
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 239 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 298
+ + + L+I+ A+++ +P+A L + + +A++ + A
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA------- 297
Query: 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358
L A N K E ++E+A LY + + A + VL
Sbjct: 298 -------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 401
++G+ + + + + D + N+ + +
Sbjct: 351 QQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.2 bits (230), Expect = 8e-21
Identities = 65/420 (15%), Positives = 141/420 (33%), Gaps = 38/420 (9%)
Query: 51 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 110
L H Q G E A+ + + +P + + L + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF------QCRRLDRSAHF 55
Query: 111 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168
A ++ P E +N+G ++ E+G+ + A + ++ AL +
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---------FIDGYIN 106
Query: 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228
+ + + + ++ + V +L LL+ + A Y +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 229 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 288
++ A+ L + A+ + L+I +A+ ++ + +A LG++ + + +A +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348
A A + E ++ A + Y R I
Sbjct: 227 LRALS--------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 408
A L EKG ++D + + D NLA++ QGN A+++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR-----LCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 409 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
Y+ L + A LA + + Q+ AI ++P+ + G +++
Sbjct: 328 YRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.5 bits (166), Expect = 9e-13
Identities = 24/145 (16%), Positives = 58/145 (40%), Gaps = 8/145 (5%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
+ ++ + L V + G A+ + + +E+ P + L + + G +
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287
Query: 65 EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEV 122
+A++ A ++ P A + +L + + A L +KA E P
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKRE------QGNIEEAVRLYRKALEVFPEFAAA 341
Query: 123 LNNIGVIHFEKGEFESAHQSFKDAL 147
+N+ + ++G+ + A +K+A+
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.0 bits (162), Expect = 2e-12
Identities = 18/88 (20%), Positives = 39/88 (44%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
+ L ++ + G+ A+ + K LE++P+ L + Q G++
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 65 EKAQELLRKAAKIDPRDAQAFIDLGELL 92
++A ++A +I P A A+ ++G L
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (155), Expect = 2e-11
Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 51/237 (21%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
F+ Y LG V + F A+ + + L + P++ L +Y + G I+ A +
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 72 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVI 129
R+A ++ P A+ +L L + A A P + LNN+ I
Sbjct: 261 RRAIELQPHFPDAYCNLANALKE------KGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Query: 130 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 189
E+G E A + ++ AL
Sbjct: 315 KREQGNIEEAVRLYRKAL------------------------------------------ 332
Query: 190 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 246
E+ NLA +L+Q A + Y+ + + DAY + K +
Sbjct: 333 -EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.2 bits (148), Expect = 6e-11
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 21 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 80
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 81 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 140
L L+ ++ K GE + + ++E
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 119
Query: 141 QSFKDAL 147
+
Sbjct: 120 ELALQIE 126
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.9 bits (98), Expect = 1e-04
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 324 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 383
L L++A EL I + + +L G F+ + + Q +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP----- 61
Query: 384 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 443
+ L H+ A + + N + L ++ ++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 444 SLLRAIHLAPSNYTLRFDAGVA 465
L+ L L D +
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 39.3 bits (91), Expect = 0.001
Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 7/104 (6%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
++ GDF A + ++++P+ L H+ + + A
Sbjct: 33 RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKV 92
Query: 77 ID-PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP 119
+ + + L ++ L + E
Sbjct: 93 LGENEELTKSLVSFNLS------MVSQDYEQVSELALQIEELRQ 130
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 44/280 (15%), Positives = 78/280 (27%), Gaps = 18/280 (6%)
Query: 6 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 65
E P + G +L+ GD +A+ FE ++ P + E + LG + Q
Sbjct: 11 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 70
Query: 66 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTG-----------AALDAFKTARTLLKKA 114
A LR+ ++ P + A + L + A+ T ++
Sbjct: 71 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 130
Query: 115 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 174
+ I F + F A+ D + V+ +
Sbjct: 131 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 190
Query: 175 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 234
N L L N + E + YR L Y+ +
Sbjct: 191 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------YRRALELQPGYIRSR 243
Query: 235 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 274
L + ++E EAL + K G +
Sbjct: 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 7e-05
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 10/279 (3%)
Query: 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252
P F Q D A +L+ + + +++A+ L L+I
Sbjct: 15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 74
Query: 253 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNY 311
+ L++ AL L +A E R T G
Sbjct: 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 312 FAALRNEKRAPKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDL 369
L + + KEL+ + + + G GV+ G++D + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 370 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429
FT + + A + + L
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLG 247
Query: 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468
+ ++ + L A+++ + R + G +
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 8e-04
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----HIYVQLGQIEK 66
+I Y LG + LG R A+ +F + L + + G +I+ L
Sbjct: 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 296
Query: 67 AQELLRKAAKIDPRDAQAFID 87
D RD +
Sbjct: 297 MLGQSDAYGAADARDLSTLLT 317
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 7e-08
Identities = 37/260 (14%), Positives = 74/260 (28%), Gaps = 20/260 (7%)
Query: 33 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92
+ + + D ++ ++ ++ +K D A +L
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61
Query: 93 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 152
AFK T L+ + N V E+A + L +
Sbjct: 62 NH--------AFKNQITTLQGQAKN--RANPNRSEVQANLSLFLEAASGFYTQLLQELCT 111
Query: 153 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 212
+ +D + +S + + L +L + +
Sbjct: 112 VFNVDLP---CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY-ICQHCLVHLGDIARYRNQ 167
Query: 213 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 272
T A YR Y +LA +A ++ + +I ++ V +P A + L
Sbjct: 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227
Query: 273 DL---ELKNDDWVKAKETFR 289
L++ D VK K
Sbjct: 228 KALSKALESRDEVKTKWGVS 247
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 2e-07
Identities = 34/339 (10%), Positives = 91/339 (26%), Gaps = 38/339 (11%)
Query: 66 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 125
++ + LR+A + + + E+ S A D ++ + + +E
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSR--QALQDLYQKMLVTDLEYALDKKVEQD-- 59
Query: 126 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 185
F++ + + + ++ V + L+ +
Sbjct: 60 -----LWNHAFKNQITTLQGQ------AKNRANPNRSEVQANLSLFLEAASGFYTQLLQE 108
Query: 186 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 245
+ L + + T A + L IA+ RN
Sbjct: 109 LCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRN 166
Query: 246 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 305
+ A ++ + L L D + + + ++
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS------------IA 214
Query: 306 LGNWNYFAALRN-----EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 360
+ + AA N K + + + + ++ ++Y +
Sbjct: 215 VKF-PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY--LSKSLEKLSP 271
Query: 361 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 399
+ + + + + A S + V INL ++ +
Sbjct: 272 LREKLEEQFKELLFQKAFNSQQLVHVTV-INLFQLHHLR 309
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 4e-07
Identities = 10/76 (13%), Positives = 22/76 (28%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
LG + A + + ++ P N + L + G ++
Sbjct: 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214
Query: 77 IDPRDAQAFIDLGELL 92
+ A +L + L
Sbjct: 215 VKFPFPAASTNLQKAL 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 4e-07
Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 10/130 (7%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 79
++ G + L V + LG I + + +
Sbjct: 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151
Query: 80 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFE 137
+ LG++ + A + + A + VP + N + ++ KG+
Sbjct: 152 --QHCLVHLGDIA------RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL 203
Query: 138 SAHQSFKDAL 147
+ + ++
Sbjct: 204 TTIFYYCRSI 213
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.5 bits (114), Expect = 2e-06
Identities = 25/269 (9%), Positives = 57/269 (21%), Gaps = 24/269 (8%)
Query: 33 ALTNFEKVLEIYPDN----------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 82
L ++L PD + L+ ++ L +++P+
Sbjct: 48 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY 107
Query: 83 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 142
+ LL + L+ V
Sbjct: 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWD-YRRFVAAQAAVAPAEELAF 166
Query: 143 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 202
+ S+ + + H + G LP N +
Sbjct: 167 TDSL-------------ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE 213
Query: 203 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 262
L + ++ Y L + + + + S + + E N
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273
Query: 263 KYPNALSMLGDLELKNDDWVKAKETFRAA 291
+ +L + + F
Sbjct: 274 WCLLTIILLMRALDPLLYEKETLQYFSTL 302
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.1 bits (108), Expect = 9e-06
Identities = 11/78 (14%), Positives = 22/78 (28%)
Query: 12 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 71
E +F + L + +++ T+ L L ++ +
Sbjct: 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299
Query: 72 RKAAKIDPRDAQAFIDLG 89
+DP A DL
Sbjct: 300 STLKAVDPMRAAYLDDLR 317
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 69
+ LG+V D+ E+ L D L L + Q G ++KA
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 70 LLRKAAKIDPRDAQAFIDLGEL 91
L +K ++DP +A +L
Sbjct: 68 LTKKLLELDPEHQRANGNLKYF 89
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 3e-05
Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 15/143 (10%)
Query: 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 76
+ G + D++ AL F + + +G +Y L + +A++ ++
Sbjct: 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64
Query: 77 IDPRDAQ-AFIDLGELLISSDTGAALDAFKTARTLLKK-----------AGEEVPIEVLN 124
D A F + A+ K A L+ + EVL
Sbjct: 65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 124
Query: 125 NIGVIHFEKGEFESAHQSFKDAL 147
NI ++ +K E++ A + A
Sbjct: 125 NIAFMYAKKEEWKKAEEQLALAT 147
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.004
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 25 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84
L + L+ CE L + +Y + + +KA+E L A + +
Sbjct: 97 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156
Query: 85 FID 87
ID
Sbjct: 157 KID 159
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 4e-05
Identities = 25/278 (8%), Positives = 75/278 (26%), Gaps = 12/278 (4%)
Query: 41 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS--SDTG 98
+ + + + + E+A +L R A +++ + + LL S D
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 99 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158
++ K +V ++ V+ + + D +
Sbjct: 96 EEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIAD--ILNQDAKNYHA 148
Query: 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 218
+ + + + + D + + + V+ N ++
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208
Query: 219 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL--EL 276
+I + + + ++ L+ + P ++ L D+ ++
Sbjct: 209 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268
Query: 277 KNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFA 313
+ ++ A + T+ W Y
Sbjct: 269 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 40/348 (11%), Positives = 91/348 (26%), Gaps = 34/348 (9%)
Query: 20 LGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKA 74
QV + G+ A + LE P LG + G++ ++ L+++
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 75 AKIDPRD------AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEV---LN 124
++ + + I E+L + A + + A L+ + E +
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 125 NIGVIHFEKGEFESAHQSFK------DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 178
+ + + A S + + L L + + + + +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 179 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR-- 236
L + N H + D AA+ R
Sbjct: 198 LENLLGNGKYH---SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254
Query: 237 --LAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETF 288
+A + + ++ E + L +L L + A+
Sbjct: 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 314
Query: 289 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 336
A + + + LR + L +A+ +
Sbjct: 315 LDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 362
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 21/285 (7%)
Query: 193 PWNKVTVLFNLARLLEQIHDTVAASVLYRLIL------FKYQDYVDAYLRLAAIAKARNN 246
++++ L +L + + L + + + + ++ + I A+
Sbjct: 47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106
Query: 247 LQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGK 298
LQ + E +A ++ + + + L +A+ + R+ +
Sbjct: 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166
Query: 299 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 358
L +L + + + L A +
Sbjct: 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLN--RLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 359 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418
G + + + + W N+A G F A + +
Sbjct: 225 MTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283
Query: 419 NTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459
+ LL L + +++A + D ++ LL A+ LA +
Sbjct: 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 328
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 5e-04
Identities = 11/80 (13%), Positives = 23/80 (28%)
Query: 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 64
++ +K + + + ET LG Y+ LG +
Sbjct: 166 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 225
Query: 65 EKAQELLRKAAKIDPRDAQA 84
+ A L + A + +
Sbjct: 226 DSATALFKLAVANNVHNFVE 245
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 5e-04
Identities = 33/250 (13%), Positives = 63/250 (25%), Gaps = 19/250 (7%)
Query: 33 ALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 88
L E++L + + L G +Y LG A+ +A I P + F L
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 77
Query: 89 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148
G L + A + L N G+ + G + A
Sbjct: 78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAH----LNRGIALYYGGRDKLAQDDLLAFYQ 133
Query: 149 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 208
D + + + + Q + + ++ +
Sbjct: 134 -------DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186
Query: 209 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----Y 264
+ + + L + +L + L A+ N +
Sbjct: 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246
Query: 265 PNALSMLGDL 274
AL L L
Sbjct: 247 RYALLELSLL 256
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.2 bits (90), Expect = 8e-04
Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 11/199 (5%)
Query: 49 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 108
+ LK G+ + +A +A +P A + + + A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 109 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 168
L ++ +G E ++ A + + A L + + D
Sbjct: 65 LELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYS-------LAKEQRLNFGDDI 113
Query: 169 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 228
S L+ + ++ E H E + A ++ + +
Sbjct: 114 PSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173
Query: 229 DYVDAYLRLAAIAKARNNL 247
+ + L
Sbjct: 174 QQACIEAKHDKYMADMDEL 192
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (90), Expect = 0.001
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 14/246 (5%)
Query: 226 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 279
K+++ D ++ A I + R L L+ + +A K N
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 339
+ V A ++ A + + + + L N+ E A E Y +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ- 150
Query: 340 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYF 397
+ + A GQ+ + D+++++ +++ G+ Q D ++
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 398 AQGNFALAMKMYQNCLRKFYYNTDAQ-----ILLYLARTHYEAEQWQDCKKSLLRAIHLA 452
A + A + Q + D++ L A ++EQ + K + L
Sbjct: 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
Query: 453 PSNYTL 458
T+
Sbjct: 271 KWKITI 276
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.0 bits (87), Expect = 0.001
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 11 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE- 69
Y G+ QL + +F SA +FEKVLE+ P N + + + +
Sbjct: 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR 154
Query: 70 ----LLRKAAKID 78
+ +K A+ D
Sbjct: 155 TYANMFKKFAEQD 167
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.002
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 58 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGE 116
V + + K ++ + + L+ LL K +
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 117 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 147
E + + + V ++ E+E A + + L
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 99
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (83), Expect = 0.003
Identities = 14/82 (17%), Positives = 28/82 (34%)
Query: 374 QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 433
E A+GSV + + + + + L K + YLA +Y
Sbjct: 24 SEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83
Query: 434 EAEQWQDCKKSLLRAIHLAPSN 455
++++ K + + P N
Sbjct: 84 RLKEYEKALKYVRGLLQTEPQN 105
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 760 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.85 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.8 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.8 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.53 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.41 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.33 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.31 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.26 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.97 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.16 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.14 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.04 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.91 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.75 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.84 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-39 Score=340.20 Aligned_cols=385 Identities=20% Similarity=0.252 Sum_probs=363.2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cC
Q 004339 17 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 95 (760)
Q Consensus 17 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 95 (760)
++.+|..++..|+|++|+.+|+++++.+|+++.+++.+|.+|...|++++|+.+|++++.++|+++.+|..+|.++. .|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHH
Q 004339 96 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 175 (760)
Q Consensus 96 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 175 (760)
++++|+..+..++...|.. ...+...+..+...+.+..+...+.....
T Consensus 82 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 129 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDF-----IDGYINLAAALVAAGDMEGAVQAYVSALQ--------------------------- 129 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHSCSSHHHHHHHHHHH---------------------------
T ss_pred ccccccccccccccccccc-----ccccccccccccccccccccccccccccc---------------------------
Confidence 9999999999999998886 78888888888888888888777776654
Q ss_pred hHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004339 176 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 255 (760)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 255 (760)
..+.........+......+....+...+...+...|.+..++..+|.++...|++..|+..+.
T Consensus 130 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 193 (388)
T d1w3ba_ 130 ----------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp ----------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------cccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHH
Confidence 3345567778888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHH
Q 004339 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 335 (760)
Q Consensus 256 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 335 (760)
+++..+|+++.++..+|.++...|++++|+..|.+++...+. ....+..+|.+ |... |+++.|+.+
T Consensus 194 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~ 259 (388)
T d1w3ba_ 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDT 259 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHH
T ss_pred HHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHH-HHHC------------CCHHHHHHH
Confidence 999999999999999999999999999999999999999887 88899999999 9888 999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004339 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 415 (760)
Q Consensus 336 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (760)
|++++..+|+++.++..+|.++...|++.+|+.+|..++...| ..+.++..+|.++...|++++|+..|++++..
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-----ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 88999999999999999999999999999996
Q ss_pred hcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 416 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 416 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.|.++.+++.+|.+|..+|++++|+.+|+++++++|+++.+++++|.+|..++
T Consensus 335 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 335 --FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999999987654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-35 Score=309.45 Aligned_cols=364 Identities=18% Similarity=0.195 Sum_probs=342.4
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 84 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (760)
+.+..+|+++.+++.+|.+|+..|++++|+.+|+++++.+|.++.+|..+|.+|..+|++++|+..+..++..+|.....
T Consensus 24 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 103 (388)
T d1w3ba_ 24 QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhh
Q 004339 85 FIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 163 (760)
Q Consensus 85 ~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 163 (760)
+...+.... ...+..+...........+.. .......+......+....+...+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 163 (388)
T d1w3ba_ 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDL-----YCVRSDLGNLLKALGRLEEAKACYLKAIE--------------- 163 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-----THHHHHHHHHHHTTSCHHHHHHHHHHHHH---------------
T ss_pred ccccccccccccccccccccccccccccccc-----ccccccccccccccchhhhhHHHHHHhhc---------------
Confidence 888888776 567777777777776666554 67788888999999999999999998876
Q ss_pred hhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 004339 164 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 243 (760)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 243 (760)
..|..+.++..+|.++...|.++.|...+.+++..+|+++.++..+|.++..
T Consensus 164 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 215 (388)
T d1w3ba_ 164 ----------------------------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp ----------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred ----------------------------cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhc
Confidence 5677889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCch
Q 004339 244 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 323 (760)
Q Consensus 244 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~ 323 (760)
.|++++|+..+.+++...|..+..+..+|.++...|++++|+.+|++++...|. .+.++..+|.+ +...
T Consensus 216 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~--------- 284 (388)
T d1w3ba_ 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANA-LKEK--------- 284 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHH-HHHH---------
T ss_pred cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHc---------
Confidence 999999999999999999999999999999999999999999999999999987 89999999999 9999
Q ss_pred HHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 324 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 324 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
|++.+|+..|..++...|.+..++..+|.++...|++++|+.+|++++++.| +++.+++++|.+|..+|+++
T Consensus 285 ---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~ 356 (388)
T d1w3ba_ 285 ---GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp ---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHTTTCCH
T ss_pred ---CCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhcc
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 437 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 437 (760)
+|+..|++++.+ +|.++.++.+||.+|.++|+
T Consensus 357 ~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 357 EALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999999996 78889999999999999885
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6.2e-25 Score=226.76 Aligned_cols=262 Identities=15% Similarity=0.101 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 275 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 275 (760)
+....+..|..+...|++++|+.+|+++++.+|.++.+|..+|.++...|++++|+.+|.+++.++|+++.++..+|.+|
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHH-HHHHH-hhhhcCchHHhhcHHHHHHHHHHHHhhCCC--CHHHHH
Q 004339 276 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN-YFAAL-RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAAN 351 (760)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~-y~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~ 351 (760)
...|++.+|+..+..++...|.. ...+....... ..... ...........+.+..|+..|.+++..+|. ++.++.
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred cccccccccccchhhHHHhccch-HHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 99999999999999999887752 11110000000 00000 000000011227889999999999999987 467899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 004339 352 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 431 (760)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 431 (760)
.+|.++...|++++|+.+|.+++...| .++.+|+.+|.+|..+|++++|+..|++++.. .|.++.+++.+|.+
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhccccccccccc-----ccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 999999999999999999999999999 88999999999999999999999999999996 78889999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 432 HYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 432 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
|..+|++++|+.+|.+|+.++|++...+..++.+
T Consensus 250 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHH
Confidence 9999999999999999999999987766555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-25 Score=231.81 Aligned_cols=244 Identities=17% Similarity=0.093 Sum_probs=163.5
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
+....+..|..++..|++++|+.+|+++++.+|+++.+|+.+|.++...|+++.|+.+|.+++.++|+++.+|..+|.+|
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 55567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCCCCCH----H------HHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccch
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGEEVPI----E------VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 161 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~----~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 161 (760)
. .|++..|+..+.+++.+.|........ . ........+...+.+.+|+..|.+++...|
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p---------- 167 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP---------- 167 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST----------
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh----------
Confidence 8 889999999999999988875211100 0 001111122233444445555544444221
Q ss_pred hhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 004339 162 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 241 (760)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 241 (760)
....+.++..+|.++...|++++|+.+|++++..+|.++.+|..+|.++
T Consensus 168 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (323)
T d1fcha_ 168 -------------------------------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 216 (323)
T ss_dssp -------------------------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------------------------------cccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcc
Confidence 0112344555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 242 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 242 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
...|++++|+.+|.++++++|+++.+++.+|.+|...|++++|+.+|.+++.+.|.
T Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred cccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 55555555555555555555555555555555555555555555555555554443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.6e-22 Score=204.95 Aligned_cols=241 Identities=10% Similarity=0.006 Sum_probs=216.6
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHcCCChHHH
Q 004339 190 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNAL 268 (760)
Q Consensus 190 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 268 (760)
+..+|....++..+|.++...+.+++|+.+|.+++.++|.+..+|..+|.++...|. +++|+.++.+++..+|++..+|
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~ 115 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 346788899999999999999999999999999999999999999999999999874 9999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHH
Q 004339 269 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 348 (760)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 348 (760)
..+|.++...|++.+|+.+|.+++.+.|. +..+|..+|.+ +... |+++.|+.+|.+++.++|.+..
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~-~~~~------------~~~~~Al~~~~~al~~~p~n~~ 181 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNS 181 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHH-HHHH------------HhhHHHHHHHHHHHHHCCccHH
Confidence 99999999999999999999999999998 89999999999 9999 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCC------hHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcH
Q 004339 349 AANGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 422 (760)
Q Consensus 349 ~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 422 (760)
+|+++|.++...+. +.+|+..+.+++.+.| .++.+|+.++.++...| +.++...+..++...+.+.++
T Consensus 182 a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~ 255 (315)
T d2h6fa1 182 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSP 255 (315)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-----CchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCH
Confidence 99999999988776 5799999999999999 88999999999876544 688999999999987777778
Q ss_pred HHHHHHHHHHHHh--ccHHHHHHHHHHHHH
Q 004339 423 QILLYLARTHYEA--EQWQDCKKSLLRAIH 450 (760)
Q Consensus 423 ~~~~~la~~~~~~--g~~~~A~~~~~~al~ 450 (760)
.++..++.+|... +....+...+.+++.
T Consensus 256 ~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 256 YLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888888654 333444444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.9e-21 Score=198.55 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=204.0
Q ss_pred hhhcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHH
Q 004339 5 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQ 83 (760)
Q Consensus 5 k~i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 83 (760)
..|..+|++..++..+|.++...+.+++|+.+|+++|.++|.+..+|+.+|.++...| ++++|+.++.+++.++|++..
T Consensus 34 ~~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~ 113 (315)
T d2h6fa1 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 113 (315)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh
Confidence 3567788999999999999999999999999999999999999999999999999987 599999999999999999999
Q ss_pred HHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchh
Q 004339 84 AFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 162 (760)
Q Consensus 84 ~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 162 (760)
+|..+|.++. .|++.+|+..|.+++.++|.+ ..+|.++|.++...|++++|+.+|.+++.
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-----~~a~~~~~~~~~~~~~~~~Al~~~~~al~-------------- 174 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEFKLWDNELQYVDQLLK-------------- 174 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHH--------------
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-----hHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------
Confidence 9999999998 899999999999999999997 89999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHcCCcHHHHHH
Q 004339 163 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD------TVAASVLYRLILFKYQDYVDAYLR 236 (760)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~ 236 (760)
.+|.+..+|+++|.++...+. +.+|+..+.+++..+|.+..+|..
T Consensus 175 -----------------------------~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~ 225 (315)
T d2h6fa1 175 -----------------------------EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 225 (315)
T ss_dssp -----------------------------HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred -----------------------------HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHH
Confidence 677899999999999988776 689999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHhh
Q 004339 237 LAAIAKARNNLQLSIELVNEALKVNGKY--PNALSMLGDLELK 277 (760)
Q Consensus 237 la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 277 (760)
++.++...+ ..++...+..++.+.|.. +.++..++.+|..
T Consensus 226 l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 226 LKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 998865544 688999999999988764 4556666766643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=1.4e-22 Score=210.03 Aligned_cols=165 Identities=12% Similarity=-0.027 Sum_probs=97.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 004339 59 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 138 (760)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 138 (760)
...+..++|+.++.+++.++|++..+|...+.++. .+..++..+...|.+.+
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~----------------------------~l~~~~~~~~~~~~~~~ 91 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQ----------------------------HLETEKSPEESAALVKA 91 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------------------------HHHTTSCHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH----------------------------HHhhhcchHHHHHHHHH
Confidence 33344577777888888888877777766655432 22223333444555566
Q ss_pred HHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCC--HHHH
Q 004339 139 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD--TVAA 216 (760)
Q Consensus 139 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A 216 (760)
|+.+|+.++. .+|.++.+++.+|.++...+. +++|
T Consensus 92 al~~~~~~l~-------------------------------------------~~pk~~~~~~~~~~~~~~~~~~~~~~a 128 (334)
T d1dcea1 92 ELGFLESCLR-------------------------------------------VNPKSYGTWHHRCWLLSRLPEPNWARE 128 (334)
T ss_dssp HHHHHHHHHH-------------------------------------------HCTTCHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHHH-------------------------------------------hCCCcHHHHHHhhHHHHHhccccHHHH
Confidence 6666666655 445556666666666555543 5666
Q ss_pred HHHHHHHHHHcCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 217 SVLYRLILFKYQDYVDAY-LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 217 ~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
+..+.+++..+|.+..++ ..+|.++...+.+..|+.++.+++..+|.+..+|..+|.++...|++.+|+..+.+++..
T Consensus 129 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (334)
T d1dcea1 129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV 207 (334)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred HHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 666666666666655554 344555556666666666666666666666666666666666666665555544444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=2.8e-21 Score=200.01 Aligned_cols=276 Identities=7% Similarity=-0.178 Sum_probs=237.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHH
Q 004339 124 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 203 (760)
Q Consensus 124 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~l 203 (760)
..+.......+..++|+.++.+++. .+|++..+|...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~-------------------------------------------~~P~~~~a~~~r 69 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILG-------------------------------------------ANPDFATLWNCR 69 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHH-------------------------------------------HCTTCHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHH-------------------------------------------HCCCcHHHHHHH
Confidence 3344444445556899999999998 566777777666
Q ss_pred HHHHHH----------cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHcCCChHHH-HH
Q 004339 204 ARLLEQ----------IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN--LQLSIELVNEALKVNGKYPNAL-SM 270 (760)
Q Consensus 204 a~~~~~----------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~-~~ 270 (760)
+.++.. .|.+.+|+.+|+.++..+|.+..+|..+|.++...+. +.+|+..+.+++..+|.+..++ ..
T Consensus 70 ~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~ 149 (334)
T d1dcea1 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149 (334)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhH
Confidence 665544 4458999999999999999999999999999888765 8999999999999999998876 46
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHH
Q 004339 271 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 350 (760)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 350 (760)
+|.++...+.+..|+.++.+++...|. +..+|..+|.+ +... |+++.|+..+.+++...|.+...+
T Consensus 150 ~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~ 215 (334)
T d1dcea1 150 RFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL-LPQL------------HPQPDSGPQGRLPENVLLKELELV 215 (334)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH-HHHH------------SCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHH-HHHh------------cCHHHHHHHHHHhHHhHHHHHHHH
Confidence 788999999999999999999999998 89999999999 9999 999999999988888877655433
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 430 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 430 (760)
..+...+..++|...|.+++...| ..+..+..+|.++...|++.+|+..|.+++.. +|.+..+++.+|.
T Consensus 216 ----~~~~~l~~~~~a~~~~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~ 284 (334)
T d1dcea1 216 ----QNAFFTDPNDQSAWFYHRWLLGRA-----EPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMR 284 (334)
T ss_dssp ----HHHHHHCSSCSHHHHHHHHHHSCC-----CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred ----HHHHHhcchhHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHH
Confidence 345567888899999999999998 66777889999999999999999999999985 6777999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHH
Q 004339 431 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 467 (760)
Q Consensus 431 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 467 (760)
+|..+|++++|+.+|+++++++|.+...|.+|+..+.
T Consensus 285 ~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 285 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999998887754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.4e-18 Score=180.51 Aligned_cols=291 Identities=14% Similarity=0.017 Sum_probs=205.4
Q ss_pred hcCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004339 7 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 81 (760)
Q Consensus 7 i~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (760)
+..++..+......|.+++..|++++|+.+|++++...|.+ ..++..+|.+|...|++++|+..|.+++.+
T Consensus 5 ~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~---- 80 (366)
T d1hz4a_ 5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM---- 80 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred ccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----
Confidence 33344444555555666666666666666666666655554 234555555555555555555555555544
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccc
Q 004339 82 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 160 (760)
Q Consensus 82 ~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 160 (760)
.+..+... ...++..++.++...|++..|...+..++...+..
T Consensus 81 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~------- 124 (366)
T d1hz4a_ 81 -----------------------------ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ------- 124 (366)
T ss_dssp -----------------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred -----------------------------HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc-------
Confidence 33321100 14567888999999999999999999988643210
Q ss_pred hhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-----cHHHHH
Q 004339 161 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-----YVDAYL 235 (760)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~ 235 (760)
.....+....++..+|.++...|+++.|...|..++...+. ...++.
T Consensus 125 ----------------------------~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 125 ----------------------------HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp ----------------------------TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred ----------------------------ccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 01133445567888999999999999999999999987653 456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------hHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCC---hHHHHH
Q 004339 236 RLAAIAKARNNLQLSIELVNEALKVNGKY-------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKD---SYATLS 305 (760)
Q Consensus 236 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~ 305 (760)
.++.++...+.+..+...+..+....+.. ..++..++.++...|++..|...+.+++...+... ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 88999999999999999999988875432 34677889999999999999999999998766532 345566
Q ss_pred HHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 306 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 306 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
+|.+ |... |+++.|+.+|++++.. .|....++..+|.+|...|++++|+.+|.+++.+.+
T Consensus 257 la~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 257 IARA-QILL------------GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHH-HHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHc------------CCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 7777 7777 8888888888887743 344556777888888888888888888888877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.7e-18 Score=171.62 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=102.8
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
.++..+.+++.+|.+|...|++++|+..|.+++.++|+++.+|..+|.++...|++++|+..|++++.++|+++.++..+
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 111 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 314 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~ 314 (760)
|.+|...|++..|+..|.+++...|. +......++.. +...
T Consensus 112 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-~~~~ 152 (259)
T d1xnfa_ 112 GIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLA-EQKL 152 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHH-HHHh
Confidence 99999999999999999888888876 66665555555 4444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1e-18 Score=173.25 Aligned_cols=223 Identities=16% Similarity=0.044 Sum_probs=174.4
Q ss_pred CHhHHHHHHHHHHHH----HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHH
Q 004339 96 DTGAALDAFKTARTL----LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 171 (760)
Q Consensus 96 ~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 171 (760)
+.+.|+..+.+++.. .+. .+.+++.+|.+|...|++++|+..|.+++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~-----~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----------------------- 65 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDE-----RAQLLYERGVLYDSLGLRALARNDFSQALA----------------------- 65 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHhhhcCCHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhhc-----------------------
Confidence 345566666665542 222 268899999999999999999999999998
Q ss_pred HHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Q 004339 172 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 251 (760)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 251 (760)
.+|+++.+++++|.+|...|++++|+..|.+++.++|.++.+++.+|.++...|++.+|+
T Consensus 66 --------------------l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 125 (259)
T d1xnfa_ 66 --------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125 (259)
T ss_dssp --------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHH
Q 004339 252 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 331 (760)
Q Consensus 252 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 331 (760)
..|.+++..+|.+......++.++...+....+...........+...... +... +... ....+.+..
T Consensus 126 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~--------~~~~~~~~~ 193 (259)
T d1xnfa_ 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN---IVEF-YLGN--------ISEQTLMER 193 (259)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH---HHHH-HTTS--------SCHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh---HHHH-HHHH--------HHHHHHHHH
Confidence 999999999999999888888888887776666655555554443322111 1111 1100 001155667
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 004339 332 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 378 (760)
Q Consensus 332 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 378 (760)
+...+...+...|....+++.+|.+|...|++++|+.+|++++..+|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 77777777777777788888889988888999999999999888887
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4.3e-18 Score=176.67 Aligned_cols=287 Identities=13% Similarity=0.043 Sum_probs=215.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004339 47 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 126 (760)
Q Consensus 47 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 126 (760)
++++....|.++...|++++|+.+|++++...|.+.... ...++..+
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~---------------------------------~~~a~~~l 57 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS---------------------------------RIVATSVL 57 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH---------------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHH---------------------------------HHHHHHHH
Confidence 455666677777777777777777777777766543211 14578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHH
Q 004339 127 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 206 (760)
Q Consensus 127 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~ 206 (760)
|.+|...|++++|+..|.+++...+.. ...+....++..++.+
T Consensus 58 g~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 58 GEVLHCKGELTRSLALMQQTEQMARQH-------------------------------------DVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------------------------cchHHHHHHHHHHHHH
Confidence 999999999999999999998753211 1223455678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-----hHHHHHHHH
Q 004339 207 LEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGD 273 (760)
Q Consensus 207 ~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~ 273 (760)
+...|++..|...+..++...+ ....++..+|.++...|+++.+..++..++...+.. ..++..++.
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999987542 234567789999999999999999999999876543 347778889
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCCC------ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC-
Q 004339 274 LELKNDDWVKAKETFRAASDATDGK------DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN- 346 (760)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 346 (760)
++...+.+..+...+..+....... ....+..++.+ +... |+++.|..++.+++...|.+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~ 247 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY-WQMT------------GDKAAAANWLRHTAKPEFANN 247 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHSCCCCCTTC
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH-HHhc------------ccHHHHHHHHHHHHHhccccc
Confidence 9999999999999998887754321 12334455555 5555 88888888888888776653
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004339 347 ---LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 416 (760)
Q Consensus 347 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 416 (760)
...+..+|.++...|++++|+.+|.+++.... ....+..+.++..+|.+|..+|++++|+..|++++.+.
T Consensus 248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 44567788888888888888888888876543 11112456778888888888888888888888888764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=3e-14 Score=144.39 Aligned_cols=228 Identities=9% Similarity=0.021 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHH-cCCChHHHHHHHHHHhh
Q 004339 213 TVAASVLYRLILFKYQDYVDAYLRLAAIAKAR--------------NNLQLSIELVNEALKV-NGKYPNALSMLGDLELK 277 (760)
Q Consensus 213 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 277 (760)
...+..+|++++...|.++.+|+..+..+... +.+++|..+|++++.. .|.+..+|..++.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45677789999999999999999988876443 3457899999999975 78888999999999999
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004339 278 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 357 (760)
Q Consensus 278 ~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (760)
.|+++.|..+|.+++...|.....+|..++.+ .... |.++.|..+|.+++...|.+...+...|...
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~-~~~~------------~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e 178 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999887566788888888 7777 9999999999999999999999999998875
Q ss_pred H-HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHH
Q 004339 358 A-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYE 434 (760)
Q Consensus 358 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~ 434 (760)
. ..|+.+.|..+|..++...| .++.+|..++..+...|+++.|..+|++++..++.++. ..+|.........
T Consensus 179 ~~~~~~~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~ 253 (308)
T d2onda1 179 YYCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 5 46899999999999999998 88999999999999999999999999999998654433 5677788888888
Q ss_pred hccHHHHHHHHHHHHHhCCCChhH
Q 004339 435 AEQWQDCKKSLLRAIHLAPSNYTL 458 (760)
Q Consensus 435 ~g~~~~A~~~~~~al~~~p~~~~~ 458 (760)
.|+...+..+++++.++.|.....
T Consensus 254 ~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 254 IGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCHHHHHHHHHHHHHHCcccccc
Confidence 999999999999999999987543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.9e-16 Score=170.31 Aligned_cols=229 Identities=12% Similarity=0.006 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q 004339 215 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 294 (760)
Q Consensus 215 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (760)
+|+++|++++.+.|+.+.+++.+|.++...|++.+| |++++..+|.....+...+.+. ...|..++..++.....
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999876 8899999887666544333322 22366788888887765
Q ss_pred CCCC--ChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004339 295 TDGK--DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 372 (760)
Q Consensus 295 ~~~~--~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 372 (760)
.... .......++.+ +... +.|..|+..|.+++.++|.+..++.++|.++...|++..|+..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~l-~~a~------------~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 145 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFL-EAAS------------GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS 145 (497)
T ss_dssp SSCTTTTHHHHHHHHHH-HHHH------------HHHHHHHHHHTC-------------------------------CCH
T ss_pred ccCccHHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHH
Confidence 4322 22222333444 5555 8899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 373 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 373 al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
++...| ..++.++|.++...|+|++|+.+|.+|+.. .|.++.+++.||.++...|++.+|+.+|.+++.+.
T Consensus 146 al~~~~-------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 146 SCSYIC-------QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HhCCCH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 998876 578999999999999999999999999997 78889999999999999999999999999999999
Q ss_pred CCChhHHhhHHHHHHHHH
Q 004339 453 PSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 453 p~~~~~~~~la~~~~~~~ 470 (760)
|..+.++.||+.++.+..
T Consensus 217 ~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp BCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=1.3e-13 Score=139.44 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHc-
Q 004339 30 FRSALTNFEKVLEIYPDNCETLKALGHIYVQL--------------GQIEKAQELLRKAAKI-DPRDAQAFIDLGELLI- 93 (760)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~- 93 (760)
+..+..+|++|+...|.++.+|+..+..+... +.+++|..+|++++.. .|.+...|..++.++.
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 56688899999999999999999988866443 3458899999999975 7888999999999888
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 173 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 173 (760)
.|+++.|...|.+++...|.. ...+|..++.+....|+++.|..+|.+++.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~----~~~~w~~~~~~~~~~~~~~~ar~i~~~al~------------------------- 162 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDID----PTLVYIQYMKFARRAEGIKSGRMIFKKARE------------------------- 162 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSC----THHHHHHHHHHHHHHHCHHHHHHHHHHHHT-------------------------
T ss_pred cccHHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------------------------
Confidence 789999999999999987765 356899999999999999999999999987
Q ss_pred HHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Q 004339 174 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE-QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 252 (760)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 252 (760)
..|.....+...|.... ..|+.+.|..+|+.++..+|.++..|..++.++...|+++.|..
T Consensus 163 ------------------~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~ 224 (308)
T d2onda1 163 ------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp ------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ------------------hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHH
Confidence 45567778888887654 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCh----HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCC
Q 004339 253 LVNEALKVNGKYP----NALSMLGDLELKNDDWVKAKETFRAASDATDG 297 (760)
Q Consensus 253 ~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (760)
+|++++...|.++ .+|..........|+...+..+++++.+..|.
T Consensus 225 ~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 9999999887654 47888888888899999999999999888775
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=8e-14 Score=129.82 Aligned_cols=140 Identities=13% Similarity=0.207 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Q 004339 303 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 382 (760)
Q Consensus 303 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 382 (760)
+...|.. ++.. |+++.|+..|.+ +.|.++.+|+++|.+|..+|++++|+.+|.++++++|
T Consensus 8 l~~~g~~-~~~~------------~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp---- 67 (192)
T d1hh8a_ 8 LWNEGVL-AADK------------KDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---- 67 (192)
T ss_dssp HHHHHHH-HHHT------------TCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHH-HHHC------------CCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh----
Confidence 3455666 7777 999999999986 4667889999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC--------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 383 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--------------DAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 383 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
.++.+|+++|.+|..+|+|++|+..|++++...+... ...+++.+|.+|..+|++++|+..|.+|
T Consensus 68 -~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 68 -HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899999999999999999999999999997532221 1588999999999999999999999999
Q ss_pred HHhCCCChhHHhhHH
Q 004339 449 IHLAPSNYTLRFDAG 463 (760)
Q Consensus 449 l~~~p~~~~~~~~la 463 (760)
+.+.|.........+
T Consensus 147 ~~~~~~~~~~~~~~A 161 (192)
T d1hh8a_ 147 TSMKSEPRHSKIDKA 161 (192)
T ss_dssp HTTCCSGGGGHHHHH
T ss_pred HhcCCCcchHHHHHH
Confidence 999998655444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.1e-14 Score=120.09 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+...|..++..|+|++|+.+|.+++..+| .++.+|.++|.+|..+|++.+|+..|.+++.. .|.++.+|+.+|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g 78 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----cchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHH
Confidence 45679999999999999999999999999 88999999999999999999999999999997 788899999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
.++..+|++++|+..|++++.++|+++.++.+++.+
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999988876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-14 Score=121.72 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=105.9
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-
Q 004339 15 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI- 93 (760)
Q Consensus 15 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 93 (760)
.-+...|..++..|+|++|+.+|.++|..+|.++.+|..+|.+|..+|++.+|+..|.+++.++|+++.+|+.+|.++.
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004339 94 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 131 (760)
Q Consensus 94 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 131 (760)
.|++++|+..|++++.+.|.+ +.++..++.+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~-----~~~~~~l~~l~~ 116 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANN-----PQLKEGLQNMEA 116 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHhC
Confidence 899999999999999999997 888888887653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=2.1e-14 Score=144.06 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=160.6
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------ 81 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 81 (760)
+..|...|.+|...|+|++|+.+|.+++.+.+ ....+|..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 45688899999999999999999999998742 235789999999999999999999999999886544
Q ss_pred HHHHHHHHHHHc--cCCHhHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcc
Q 004339 82 AQAFIDLGELLI--SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 158 (760)
Q Consensus 82 ~~~~~~la~~~~--~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 158 (760)
..++..+|.+|. .+++..|+.+|.+++.+.+..+.+. ...++..+|.+|..+|+|.+|+.+|.+++...+...
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~---- 192 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR---- 192 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT----
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch----
Confidence 567888888875 4899999999999999987653321 356789999999999999999999999987543111
Q ss_pred cchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH-----
Q 004339 159 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----- 233 (760)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----- 233 (760)
.........++..+.++...|++..|...|.+++..+|.....
T Consensus 193 --------------------------------~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~ 240 (290)
T d1qqea_ 193 --------------------------------LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (290)
T ss_dssp --------------------------------TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred --------------------------------hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHH
Confidence 0122344567888999999999999999999999988865543
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHc
Q 004339 234 YLRLAAIAKA--RNNLQLSIELVNEALKVN 261 (760)
Q Consensus 234 ~~~la~~~~~--~g~~~~A~~~~~~al~~~ 261 (760)
...++.++.. .+.+.+|+..|.++..++
T Consensus 241 l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 2333333332 345777777776655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=6.8e-14 Score=140.27 Aligned_cols=208 Identities=13% Similarity=0.085 Sum_probs=161.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHHhcCCCC-CHHH
Q 004339 51 LKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEV-PIEV 122 (760)
Q Consensus 51 ~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 122 (760)
|...|.+|...|++++|+.+|.+++.+. +....++..+|.+|. .|++++|+.+|.+++.+.+..+... ...+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 4445889999999999999999999873 234567899999998 8899999999999999988864322 2567
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHH
Q 004339 123 LNNIGVIHFE-KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 201 (760)
Q Consensus 123 ~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~ 201 (760)
+..+|.+|.. .|+++.|+.+|.+++.+.+.. ...+....++.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-------------------------------------~~~~~~~~~~~ 162 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD-------------------------------------QSVALSNKCFI 162 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc-------------------------------------CchhhhhhHHH
Confidence 8888988865 699999999999998743210 12233456789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChH-----HHH
Q 004339 202 NLARLLEQIHDTVAASVLYRLILFKYQDYV-------DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-----ALS 269 (760)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~ 269 (760)
++|.++..+|+|++|+.+|++++...|... ..+..++.++...|++..|...+.+++.++|..+. ...
T Consensus 163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~ 242 (290)
T d1qqea_ 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHH
Confidence 999999999999999999999998876543 45678888999999999999999999999886544 333
Q ss_pred HHHHHHhh--cCCHHHHHHHHHHhhhcC
Q 004339 270 MLGDLELK--NDDWVKAKETFRAASDAT 295 (760)
Q Consensus 270 ~la~~~~~--~g~~~~A~~~~~~al~~~ 295 (760)
.++.++.. .+.+.+|+..|..+..+.
T Consensus 243 ~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 243 SLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 44444443 356899999998877664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=9.1e-14 Score=125.44 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=112.1
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
+..+...|..|+..|+|.+|+.+|.+++.++|+++.+|+.+|.+|..+|++.+|+..|.++++++|.++.+|..+|.++.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHH
Q 004339 94 -SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF--EKGEFESAHQSF 143 (760)
Q Consensus 94 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~ 143 (760)
.|++.+|+..|.+++.+.|.+ +.++..++.+.. ..+.+.+|+...
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~-----~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 899999999999999999987 788877776643 344466665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4e-15 Score=161.18 Aligned_cols=226 Identities=10% Similarity=-0.022 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHccCCHhHHHHHHHHHHHHH
Q 004339 32 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 111 (760)
Q Consensus 32 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~al~~~ 111 (760)
+|+.+|++++.+.|+.+.+++.+|.++...|++.+| |++++..+|.....+...+.+. ...|..++..++...+..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k~~ 79 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW-NHAFKNQITTLQGQAKNR 79 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcccc
Confidence 677888888888888888888888888888877765 7777877776655543322222 222344555555444322
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCcc
Q 004339 112 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 191 (760)
Q Consensus 112 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (760)
... .........++.++...+.|..|+..|..++.
T Consensus 80 ~~~--~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~------------------------------------------- 114 (497)
T d1ya0a1 80 ANP--NRSEVQANLSLFLEAASGFYTQLLQELCTVFN------------------------------------------- 114 (497)
T ss_dssp SCT--TTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------------------
T ss_pred cCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------
Confidence 111 00111222233444444445555444444433
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 192 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 192 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
.+|.....+.++|.++...|++..|+..+..++..+| ..+++.+|.++...|++++|+.+|.+++.++|+++.+++.+
T Consensus 115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497)
T d1ya0a1 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497)
T ss_dssp ----------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 4455666666677777777777777766666665554 24566666677677777777777777777777766677777
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 004339 272 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 309 (760)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~ 309 (760)
|.++...|++.+|+.+|.+++...++ .+.++.+|+.+
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~ 229 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKA 229 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Confidence 77766666666666666666666555 55666666555
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5e-13 Score=120.48 Aligned_cols=114 Identities=6% Similarity=0.060 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
+...|..|+..|+|++|+.+|.+++.++| .++.+|+++|.+|..+|++.+|+..|.+++.. +|.++.+++.+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g 85 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch-----hhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHH
Confidence 44569999999999999999999999999 88999999999999999999999999999997 788999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 430 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
.+|..+|++++|+..|++++.++|+++.++..++.+.....
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 126 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 126 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887754433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.5e-13 Score=127.94 Aligned_cols=133 Identities=21% Similarity=0.265 Sum_probs=119.2
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-c
Q 004339 16 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-S 94 (760)
Q Consensus 16 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 94 (760)
.++..|..++..|+|+.|+..|.++ .|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|.++. .
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 4567899999999999999999874 57789999999999999999999999999999999999999999999998 8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccc
Q 004339 95 SDTGAALDAFKTARTLLKKAGE-----------EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 151 (760)
Q Consensus 95 ~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 151 (760)
|++.+|+..|.+++...+.+.. .....+++++|.+|..+|++++|+..|..++...|
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999987665421 01257899999999999999999999999998654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=3.4e-13 Score=127.00 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=99.4
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 92 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 92 (760)
.+..+...|..++..|+|++|+.+|.+++.++|.++.+|..+|.+|...|++++|+..|.+++.++|+++.+|+.+|.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHHhcCC
Q 004339 93 I-SSDTGAALDAFKTARTLLKKAGE 116 (760)
Q Consensus 93 ~-~~~~~~A~~~~~~al~~~~~~~~ 116 (760)
. .|++++|+..|++++.+.|....
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHH
Confidence 9 89999999999999999998643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.7e-12 Score=115.77 Aligned_cols=121 Identities=13% Similarity=0.180 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCC----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ----------MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 417 (760)
..+...|..++..|+|++|+.+|.+++...|...... ...++.++|.||+.+|+|++|+.++++++..
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-- 91 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 91 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--
Confidence 4556789999999999999999999999987432111 1356788999999999999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 418 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 418 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+|.++.+++.+|.+|+.+|++++|+.+|++++.++|+++.+...++.+...+.
T Consensus 92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999876655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.43 E-value=6.6e-11 Score=116.38 Aligned_cols=231 Identities=15% Similarity=0.164 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHH
Q 004339 196 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSML 271 (760)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 271 (760)
+|.+++.||..+...+++.+|+.+|+++.+ .++..+++.||.+|.. ..++..|..++..+.. +.++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcc
Confidence 467899999999999999999999999976 4688999999999987 6789999999998765 4578888888
Q ss_pred HHHHhh----cCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCH
Q 004339 272 GDLELK----NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 347 (760)
Q Consensus 272 a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 347 (760)
|.++.. ......|...+..+.... ...+...++.. +.... . .......|...+..... +.+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~-~~~~~---~-----~~~~~~~a~~~~~~~~~--~~~~ 142 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI-YHDGK---V-----VTRDFKKAVEYFTKACD--LNDG 142 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCS---S-----SCCCHHHHHHHHHHHHH--TTCH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhccc-ccCCC---c-----ccchhHHHHHHhhhhhc--cccc
Confidence 888764 467899999999988764 45566666666 44320 0 01566777888777655 4678
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhcCC
Q 004339 348 YAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYN 419 (760)
Q Consensus 348 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 419 (760)
.++..+|.++.. ..+...+..++..+.+. .++.+++++|.+|.. ..++..|+.+|.++...
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~---- 211 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---- 211 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----
T ss_pred chhhhhhhhhccCCCcccccccchhhhhccccc-------cccccccchhhhcccCcccccchhhhhhhHhhhhcc----
Confidence 889999999986 45677888888887754 468999999999998 67999999999999885
Q ss_pred CcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCC
Q 004339 420 TDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 420 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 455 (760)
.++.+++.||.+|.. ..++.+|+.+|++|....+..
T Consensus 212 g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 212 ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 578999999999986 348999999999999887543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=6e-13 Score=125.27 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHH
Q 004339 346 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 425 (760)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 425 (760)
++..+...|..++..|+|++|+.+|.+++.++| .++.+|.++|.+|..+|+|++|+..|.+++.+ .|.++.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-----~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~ 75 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAH 75 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHH
Confidence 456678899999999999999999999999999 88999999999999999999999999999996 78889999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHH
Q 004339 426 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 463 (760)
Q Consensus 426 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 463 (760)
+.+|.+|..+|++++|+.+|++|+.++|++...+...+
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 113 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 99999999999999999999999999987765554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.41 E-value=6.9e-11 Score=116.23 Aligned_cols=224 Identities=21% Similarity=0.209 Sum_probs=184.2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004339 13 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDL 88 (760)
Q Consensus 13 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (760)
+|.+++.+|..++..+++.+|+.+|+++.+. .++.+++.||.+|.. ..++..|..++..+... .++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 4678999999999999999999999999764 689999999999997 67999999999998765 477778888
Q ss_pred HHHHcc-----CCHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccchhhhhccc
Q 004339 89 GELLIS-----SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSK 159 (760)
Q Consensus 89 a~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 159 (760)
|.++.. .+...|+..++.+....+ ..+...++..+.. ......|+..+.....
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----------- 138 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY-------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----------- 138 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----------
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh-------hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-----------
Confidence 877652 368899999999887543 4666777777765 4567777777776644
Q ss_pred chhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHH
Q 004339 160 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYL 235 (760)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~ 235 (760)
+.....++.+|.++.. ..+...+..++..+.. +.++.+++
T Consensus 139 ----------------------------------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~ 182 (265)
T d1ouva_ 139 ----------------------------------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCF 182 (265)
T ss_dssp ----------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred ----------------------------------ccccchhhhhhhhhccCCCcccccccchhhhhcccc--cccccccc
Confidence 3456788899999986 4677788888888774 56899999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh----cCCHHHHHHHHHHhhhcCC
Q 004339 236 RLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATD 296 (760)
Q Consensus 236 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 296 (760)
.+|.++.. ..++..|+.+|.++... .++.+++.||.+|.. ..++.+|+.+|+++.....
T Consensus 183 ~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 183 NAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred chhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999987 67899999999999876 578999999999986 4489999999999988764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7e-13 Score=112.48 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCCCcHHHHHH
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLY 427 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~ 427 (760)
..++..+...+++.+|...|++++.++| .++.+++++|++++..+ ++.+|+.+|++++...+.+..+.+++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 3567788889999999999999999999 88999999999998755 556799999999985322333678999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 428 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 428 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
||.+|+.+|++++|+.+|++++.++|++..+...++.|.....
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988888866553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.40 E-value=8.9e-13 Score=110.58 Aligned_cols=95 Identities=23% Similarity=0.212 Sum_probs=88.3
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 93 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 93 (760)
...++.+|.+++..|++.+|+.+|++++..+|+++.+|..+|.++...|++.+|+.+|++++.++|.++.+|+.+|.+|.
T Consensus 16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -cCCHhHHHHHHHHHH
Q 004339 94 -SSDTGAALDAFKTAR 108 (760)
Q Consensus 94 -~~~~~~A~~~~~~al 108 (760)
.|++.+|+.++++++
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 789999998888865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.39 E-value=8.1e-12 Score=111.24 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004339 349 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-----------PDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 417 (760)
.+...|..++..|+|.+|+..|.+++...|....... ..++.++|.||+.+|++++|+..|.+++..
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-- 96 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 96 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--
Confidence 3455788899999999999999999988763221111 246789999999999999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 418 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 418 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+|.++.+|+.+|.+|..+|++++|+.+|.++++++|++..++..+..+..++.
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998876654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4.3e-12 Score=115.36 Aligned_cols=137 Identities=13% Similarity=0.093 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+..+...|..++..|+|+.|+.+|.+++...|........... ...+....+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~----------------------------~~~~~~~~~ 64 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ----------------------------KAQALRLAS 64 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh----------------------------hhchhHHHH
Confidence 4667788999999999999999999999864422111000000 011223457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+.++|.+|..+|++++|+.++.+++.++|.++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+....+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CHHHH
Q 004339 280 DWVKA 284 (760)
Q Consensus 280 ~~~~A 284 (760)
.....
T Consensus 145 ~~~~~ 149 (170)
T d1p5qa1 145 RQLAR 149 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.35 E-value=4.5e-11 Score=108.28 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCC----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ----------MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 417 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 417 (760)
..+...|..++..|+|.+|+..|.+++...|...... ...++.++|.||..+|+|.+|+.++++++.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-- 93 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 93 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--
Confidence 4456789999999999999999999998876432211 2346788999999999999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 418 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 418 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
+|.++.+++.+|.+|..+|++++|+..|.+++.++|+++.++..++.+...+.
T Consensus 94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999988865554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.33 E-value=9.4e-12 Score=113.11 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHHH
Q 004339 121 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 200 (760)
Q Consensus 121 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 200 (760)
..+...|..++..|+|..|+..|.+++...+...... .........|..+.++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 80 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA---------------------------EDADGAKLQPVALSCV 80 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS---------------------------CHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh---------------------------hhHHHHHhChhhHHHH
Confidence 3456778899999999999999999987432111000 0001112567788899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCC
Q 004339 201 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 280 (760)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 280 (760)
.++|.++..+|++++|+..|.++++++|.++.+|+.+|.++..+|++++|+..|.+++.++|++..+...++.+......
T Consensus 81 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 81 LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766555
Q ss_pred HHHH
Q 004339 281 WVKA 284 (760)
Q Consensus 281 ~~~A 284 (760)
..++
T Consensus 161 ~~~~ 164 (169)
T d1ihga1 161 QKDK 164 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.33 E-value=7.9e-12 Score=113.40 Aligned_cols=146 Identities=13% Similarity=0.046 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+..+...|..++..|+|.+|+.+|.+++...+.......... ....+....+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~----------------------------~~~~~~~~~~ 66 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKES----------------------------KASESFLLAA 66 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhh----------------------------hhcchhHHHH
Confidence 567788999999999999999999999874321110000000 0012234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 279 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 279 (760)
+.++|.+|..+|++.+|+..+.+++.++|.++.+++.+|.++..+|++++|+..|.+++.++|+++.++..++.+....+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred CHHH-HHHHHHHhhh
Q 004339 280 DWVK-AKETFRAASD 293 (760)
Q Consensus 280 ~~~~-A~~~~~~al~ 293 (760)
.+.+ ....|..++.
T Consensus 147 ~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 147 EHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 5543 3444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.31 E-value=1.5e-11 Score=109.46 Aligned_cols=132 Identities=18% Similarity=0.038 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
+..+...|..++..|+|..|+..|.+++...+............ ...+....+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 69 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD---------------------------KKKNIEISC 69 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH---------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH---------------------------hhhhHHHHH
Confidence 45667789999999999999999999997544211110000000 011123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 278 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 278 (760)
+.++|.+|..+|++++|+..|.+++.++|.++.+|+.+|.++..+|++++|+..|.+++.++|+++.+...++.+....
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999998888776543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.31 E-value=9.2e-12 Score=104.19 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhh
Q 004339 198 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 277 (760)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 277 (760)
..++.+|.++...|++.+|+..|++++..+|.++.+|..+|.++...|++.+|+.+|.+++.++|.++.+++.+|.+|..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhh
Q 004339 278 NDDWVKAKETFRAAS 292 (760)
Q Consensus 278 ~g~~~~A~~~~~~al 292 (760)
.|++.+|+.+|++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.29 E-value=3.1e-11 Score=109.62 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=101.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcC-----------CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 350 ANGAGVVLAEKGQFDVSKDLFTQVQEAASG-----------SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
+...|..+...|+|..|+..|.+++...+. ...|..+.++.++|.+|..+|+|++|+..|.+++.+ +
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~ 107 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 107 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--h
Confidence 345688888888888888888888765320 001245678899999999999999999999999996 7
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHH
Q 004339 419 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 470 (760)
Q Consensus 419 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 470 (760)
|.++.+|+.+|.+|..+|+++.|+..|+++++++|++..+...++.|...+.
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999988876554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=5.7e-11 Score=101.99 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCc-----H
Q 004339 348 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----A 422 (760)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 422 (760)
..+..+|..++..|+|++|+.+|.+++.++| .++.++.++|.+|..+|+|++|+..|.+++...+.... .
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a 79 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3466799999999999999999999999999 88999999999999999999999999999997544333 5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 004339 423 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 455 (760)
Q Consensus 423 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 455 (760)
.+++.+|.++..++++++|+.+|.+++..+|+.
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 678899999999999999999999999988753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2e-11 Score=103.30 Aligned_cols=104 Identities=12% Similarity=0.022 Sum_probs=91.3
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK---GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 403 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 403 (760)
+++++|.+.|++++..+|.++.+++++|+++... +++.+|+.+|++++...|.. ..+.+|+++|.+|..+|+|+
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~---~~~~~~~~Lg~~y~~~g~~~ 89 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYE 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH---HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc---hHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999864 45667999999999887611 23568999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHh
Q 004339 404 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 435 (760)
Q Consensus 404 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 435 (760)
+|+.+|++++.. .|.+..+...++.+..+.
T Consensus 90 ~A~~~~~~aL~~--~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 90 KALKYVRGLLQT--EPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcCCHHHHHHHHHHHHHH
Confidence 999999999997 788888888887776554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=4.5e-11 Score=102.67 Aligned_cols=113 Identities=17% Similarity=0.304 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Q 004339 301 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 380 (760)
Q Consensus 301 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 380 (760)
..+..+|+. |+.. |+|++|+.+|.+++.++|+++.++.++|.+|..+|+|++|+..|.+++.++|..
T Consensus 5 ~~~k~~G~~-~~~~------------~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~ 71 (128)
T d1elra_ 5 LKEKELGND-AYKK------------KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence 456678999 9998 999999999999999999999999999999999999999999999999999832
Q ss_pred CC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 004339 381 VF--VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 429 (760)
Q Consensus 381 ~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 429 (760)
.. +....++..+|.++..++++++|+.+|.+++... +++.++..+.
T Consensus 72 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~~~l~ 119 (128)
T d1elra_ 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQ 119 (128)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 11 1224578889999999999999999999999853 3455544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.20 E-value=7.1e-11 Score=103.66 Aligned_cols=112 Identities=9% Similarity=0.041 Sum_probs=91.8
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK----------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 396 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~ 396 (760)
+.|++|+..|++++.++|+++.+++++|.++... +.+++|+..|+++++++| .++.+|+++|.+|
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-----~~~~a~~~lG~~y 85 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-----KKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-----hhhHHHhhHHHHH
Confidence 8999999999999999999999999999999854 456899999999999999 8899999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHHHHH
Q 004339 397 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 468 (760)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 468 (760)
..+|.+. +......+.+..|+.+|++++.++|++...+..|+.+...
T Consensus 86 ~~~g~~~-------------------------~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka 132 (145)
T d1zu2a1 86 TSFAFLT-------------------------PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 132 (145)
T ss_dssp HHHHHHC-------------------------CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HHcccch-------------------------hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence 8876431 0111223456778888888888888888888888877543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.18 E-value=6.1e-11 Score=104.13 Aligned_cols=121 Identities=8% Similarity=0.043 Sum_probs=85.3
Q ss_pred HHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhhcCCCcHHHH
Q 004339 356 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG----------NFALAMKMYQNCLRKFYYNTDAQIL 425 (760)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~ 425 (760)
.|.+.+.|++|+..|+++++++| +++.+++++|.++...+ .+++|+..|++++.+ +|.++.++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P-----~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~ 78 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNP-----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAV 78 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCC-----cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHH
Confidence 35667789999999999999999 89999999999998654 457788888888886 77778888
Q ss_pred HHHHHHHHHhcc----HHHHHHHHHHHHHhCCCChhHHhhHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 004339 426 LYLARTHYEAEQ----WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHL 501 (760)
Q Consensus 426 ~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~l~~~~~a~~~l~~A~~~~~~l 501 (760)
+++|.+|..+|+ ...+...|.+|+.. |..++ ...+........++....|..++..+
T Consensus 79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~--------~~kal-----------~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 79 WCIGNAYTSFAFLTPDETEAKHNFDLATQF--------FQQAV-----------DEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------HHHHH-----------HHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHcccchhhHHHHHHhHHHhhhh--------hhccc-----------ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887764 34555566555542 11111 11223345556666666666666655
Q ss_pred h
Q 004339 502 S 502 (760)
Q Consensus 502 ~ 502 (760)
.
T Consensus 140 ~ 140 (145)
T d1zu2a1 140 Y 140 (145)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.6e-10 Score=91.75 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHH
Q 004339 385 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 459 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 459 (760)
+++-++.+|.+++..|+|..|+.+|++|+...+... .+.++.+||.+|+++|++++|+.+|+++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 466788999999999999999999999998864332 278999999999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 004339 460 FDAGVAMQKF 469 (760)
Q Consensus 460 ~~la~~~~~~ 469 (760)
.|++.+...+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998875544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.04 E-value=6.8e-10 Score=98.93 Aligned_cols=115 Identities=9% Similarity=-0.052 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----
Q 004339 351 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----- 418 (760)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----- 418 (760)
...|..++..|+|++|+..|.+++.+.|..... ..+.+|.++|.+|..+|+|++|+..+++++..++.
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 92 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 92 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence 345888889999999999999999999842110 12468999999999999999999999999987532
Q ss_pred CC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhhHHHH
Q 004339 419 NT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 465 (760)
Q Consensus 419 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 465 (760)
+. ...+++.+|.+|..+|++++|+..|++|+++.|...........+
T Consensus 93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~ 143 (156)
T d2hr2a1 93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 143 (156)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHH
Confidence 11 155789999999999999999999999999988665544444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.2e-09 Score=87.69 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=71.2
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 86 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (760)
+..+|.+|.+++..|+|..|+.+|++++.+.|.+ +.++..+|.++...|++++|+.+|++++.++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 4568999999999999999999999999886543 678999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004339 87 DLGELL 92 (760)
Q Consensus 87 ~la~~~ 92 (760)
+++.+.
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.94 E-value=3.6e-09 Score=94.09 Aligned_cols=103 Identities=15% Similarity=0.040 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCChHHHHHHH
Q 004339 303 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------------LYAANGAGVVLAEKGQFDVSKDLF 370 (760)
Q Consensus 303 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~ 370 (760)
++..|.. ++.. |+|++|+..|.+++.+.|.. ..+|+++|.+|..+|++++|+..+
T Consensus 12 ~l~~g~~-~~~~------------g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~ 78 (156)
T d2hr2a1 12 ALSDAQR-QLVA------------GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA 78 (156)
T ss_dssp HHHHHHH-HHHH------------TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-HHHc------------CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhh
Confidence 3444777 7777 99999999999999988764 357899999999999999999999
Q ss_pred HHHHHHhcCC--CCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004339 371 TQVQEAASGS--VFV----QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 418 (760)
Q Consensus 371 ~~al~~~p~~--~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 418 (760)
.+++.+.|.. ..+ ....+++++|.+|..+|++++|+..|++++.+.+.
T Consensus 79 ~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 79 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999987621 111 12447899999999999999999999999998643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.79 E-value=3.1e-09 Score=102.81 Aligned_cols=130 Identities=14% Similarity=0.027 Sum_probs=111.8
Q ss_pred hhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 004339 326 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 405 (760)
Q Consensus 326 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 405 (760)
.|+++.|+..|+++++.+|.+..++..+|.+|+..|++++|+..|+.++++.| ....++..++.++...+...++
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-----~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-----EYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhccccHHH
Confidence 49999999999999999999999999999999999999999999999999999 8899999999998877776665
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHhh
Q 004339 406 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 461 (760)
Q Consensus 406 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 461 (760)
...+...... ..|.....+...+.++...|++++|...+.++....|..+..+..
T Consensus 84 ~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 84 AQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp TTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 5544332222 234457777888999999999999999999999999998766544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.68 E-value=2.6e-08 Score=96.11 Aligned_cols=134 Identities=12% Similarity=0.010 Sum_probs=111.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcCCHHHH
Q 004339 205 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 284 (760)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 284 (760)
.-.+..|++++|+..|+++++.+|.+..++..++.+++..|++++|+..|+.++.++|++..++..++.++...+...++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999998877777666
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHH
Q 004339 285 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 351 (760)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 351 (760)
...+.......+......+...+.+ +... |+++.|...+.++....|..+..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~-~~~~------------gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNL-SMVS------------QDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHhhhhhcccCchHHHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHhcCCCCCcccc
Confidence 5554444333333245556666777 7777 9999999999999999998765444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.49 E-value=6.1e-07 Score=80.80 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=58.7
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHHHHHhcCCHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----------------------ETLKALGHIYVQLGQIEKAQELL 71 (760)
Q Consensus 14 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~~~~~la~~~~~~g~~~~A~~~~ 71 (760)
...++..|..+...|++++|+..|.+++.+.|... .++..++.++...|++.+|+.++
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 45788899999999999999999999999887643 23444444444444444444444
Q ss_pred HHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHH
Q 004339 72 RKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTART 109 (760)
Q Consensus 72 ~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~ 109 (760)
++++.++|.+..+|..++.+|. .|++.+|+..|.++..
T Consensus 91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444444444 3444444444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.48 E-value=1.2e-06 Score=78.91 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHhhhhhhccCCCccCCcchHHH
Q 004339 120 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 199 (760)
Q Consensus 120 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 199 (760)
...+...|..+...|++++|+..|.+++.+.+...+......... ... .....+....+
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~-~~~--------------------r~~l~~~~~~a 69 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV-EPF--------------------ATALVEDKVLA 69 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTH-HHH--------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHH-HHH--------------------HHHHHHHHHHH
Confidence 567888999999999999999999999986542211100000000 000 00011223344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 200 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 257 (760)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 257 (760)
+..++.++...|++.+|+.++++++..+|.+..+|..++.++...|++.+|+..|.++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=8.5e-06 Score=66.18 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChhHHh
Q 004339 385 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 460 (760)
Q Consensus 385 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 460 (760)
.+.+.+++|+++.... +...|+.+|+.++.. .|.+ .+.+++||.+|+++|+|++|+.++.++|+++|++..+..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 3788999999999775 457899999999985 5545 689999999999999999999999999999999988876
Q ss_pred hHHHHHHHH
Q 004339 461 DAGVAMQKF 469 (760)
Q Consensus 461 ~la~~~~~~ 469 (760)
-...|-..+
T Consensus 112 L~~~Ie~~~ 120 (124)
T d2pqrb1 112 LKSMVEDKI 120 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666654443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=1.8e-05 Score=67.08 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=94.8
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 402 (760)
.++.+|+.+|.++.... ++.+.+.|+. ....++++|+.+|.++.+. .++.+.+.||.+|.. ..++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc-------cchhhhhhHHHhhhhccccchhh
Confidence 78999999999998875 5556666664 3457899999999999875 468999999999987 4589
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAP 453 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 453 (760)
..|+.+|+++... .++.+.+.||.+|.. ..++.+|+.+|++|.+...
T Consensus 76 ~~A~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 76 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999999999885 678999999999988 5689999999999998764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=5.8e-06 Score=67.18 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=63.9
Q ss_pred chhhhhHHHHHHHcC---CHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004339 14 IFPYYGLGQVQLKLG---DFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 89 (760)
Q Consensus 14 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 89 (760)
+.+.|..|.++.... +..+|+.+|+.+++.+|.+. ++++.||.+|+++|+|++|+.++++++.++|++..+.....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 667888998888664 45689999999999888764 79999999999999999999999999999999887765443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.91 E-value=0.00012 Score=61.87 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004339 280 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 359 (760)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (760)
++.+|+.+|.++.... ++.+.+.|+.. + . .++++|+.+|.++... .++.+.+.||.+|..
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~~-~--~------------~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~ 67 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVSN-S--Q------------INKQKLFQYLSKACEL--NSGNGCRFLGDFYEN 67 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHTC-T--T------------SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhccc-c--c------------cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhh
Confidence 6778888888887764 33444444432 1 1 6788999999998775 588999999999885
Q ss_pred ----cCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 004339 360 ----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRK 415 (760)
Q Consensus 360 ----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 415 (760)
..++.+|+.+|+++.+.. ++.+.+.||.+|.. ..++.+|+.+|+++...
T Consensus 68 g~~~~~d~~~A~~~~~~aa~~g-------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 68 GKYVKKDLRKAAQYYSKACGLN-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ccccchhhHHHHHHHhhhhccC-------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 457899999999998764 58899999999987 46899999999999885
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=0.033 Score=57.04 Aligned_cols=358 Identities=8% Similarity=-0.049 Sum_probs=195.2
Q ss_pred HHHHHHHCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc-cCCHhHHHHHHHHHHHHHH
Q 004339 37 FEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLK 112 (760)
Q Consensus 37 ~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~A~~~~~~al~~~~ 112 (760)
+...+..+|+.|...... -..+...+++...+..| ...|.+....+.++.++. .|+...|...+..+.....
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 455677788887654333 33445566665544333 345677777777777766 6787777766655432211
Q ss_pred hc-------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccchhhhhcccchhhhhhhhhHHHHHHhHHh
Q 004339 113 KA-------------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 179 (760)
Q Consensus 113 ~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (760)
.. .....+..+.......+..|++..|...+..+-... .... .....+......+
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~-----------~~~~-~a~~~l~~~p~~~ 201 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADY-----------QTIA-SAIISLANNPNTV 201 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGG-----------HHHH-HHHHHHHHCGGGH
T ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhH-----------HHHH-HHHHHHHhChHhH
Confidence 11 011234444555666666677777666654321100 0000 0000000000000
Q ss_pred hhhhhccCCCccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH----HHcCCHHHHHHHHH
Q 004339 180 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA----KARNNLQLSIELVN 255 (760)
Q Consensus 180 ~~~l~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~ 255 (760)
..... .....+ ....+...+..-....+...|...+.......+.....+....... ...+....+..++.
T Consensus 202 ~~~~~----~~~~~~-~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 276 (450)
T d1qsaa1 202 LTFAR----TTGATD-FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (450)
T ss_dssp HHHHH----HSCCCH-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HHHHh----cCCCCh-hhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 00000 000111 1122233344444456888888888887776665554443333332 34566677777777
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHhhhhcCchHHhhcHHHHHHH
Q 004339 256 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 335 (760)
Q Consensus 256 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 335 (760)
.......+.......++ ..+..+++..+...+..+.. .+...+...+-+|.. +... |+...|...
T Consensus 277 ~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~-~~~~~~r~~YW~gRa-~~~~------------G~~~~A~~~ 341 (450)
T d1qsaa1 277 DAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPM-EAKEKDEWRYWQADL-LLER------------GREAEAKEI 341 (450)
T ss_dssp HHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCT-TGGGSHHHHHHHHHH-HHHT------------TCHHHHHHH
T ss_pred hhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCc-ccccHHHHHHHHHHH-HHHc------------CChhhHHHH
Confidence 66655444333333444 44566788888888876543 233356666777777 7777 899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004339 336 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM---PDVWINLAHVYFAQGNFALAMKMYQNC 412 (760)
Q Consensus 336 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (760)
|..+.. .+ + .|..|+.. .+|..-. +...|....+.. ...-+..+..++..|....|...+..+
T Consensus 342 ~~~~a~-~~-~--fYG~LAa~--~Lg~~~~--------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 342 LHQLMQ-QR-G--FYPMVAAQ--RIGEEYE--------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHT-SC-S--HHHHHHHH--HTTCCCC--------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhc-CC-C--hHHHHHHH--HcCCCCC--------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 988765 33 2 22223322 2221100 000000000010 112345678899999999999999888
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004339 413 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 448 (760)
Q Consensus 413 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 448 (760)
+.. .++.-...+|.+....|.+..|+....++
T Consensus 408 ~~~----~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 408 VKS----KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhC----CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 763 34667778899999999999999888776
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.13 Score=52.31 Aligned_cols=116 Identities=9% Similarity=-0.009 Sum_probs=81.4
Q ss_pred hcHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 004339 327 THLEKAKELYTRVIVQHTSNLYAANGAGVVLA----EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 402 (760)
Q Consensus 327 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~la~~~~~~g~~ 402 (760)
.+...|...+.......+.....+..+..... ..+....|..++........ ........++ ..+..+++
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~w~~~-~al~~~~~ 301 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-----STSLIERRVR-MALGTGDR 301 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-----CHHHHHHHHH-HHHHHTCH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc-----chHHHHHHHH-HHHHcCCh
Confidence 67888999888887776666554444433333 45677888888777665442 3333333444 45667899
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004339 403 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 450 (760)
Q Consensus 403 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 450 (760)
..+...+..+... ....+...|++|+++...|+...|..+|..+..
T Consensus 302 ~~~~~~~~~l~~~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 302 RGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcc--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 9998888754321 223388899999999999999999999999875
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.04 E-value=0.098 Score=50.51 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=35.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 004339 392 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 452 (760)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 452 (760)
+.....+.+++.-...+++.... .++..+...|+.+|...++++. +++.+..+
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~----~n~~~vn~al~~lyie~~d~~~----l~~~i~~~ 306 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQN----HNNKSVNESLNNLFITEEDYQA----LRTSIDAY 306 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHT----TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHH----cChHHHHHHHHHHHhCcchhHH----HHHHHHHh
Confidence 34455566677766777766544 2456789999999999999744 55555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.84 E-value=0.1 Score=50.30 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=64.3
Q ss_pred cCCCCCchhhhhHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004339 8 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 87 (760)
Q Consensus 8 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (760)
-..|+++ -.-..|..++..|.|+.|..+|... .-+-.+..++...+++..|..++.++ +++..|..
T Consensus 9 l~~~n~~-d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~ 74 (336)
T d1b89a_ 9 INGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE 74 (336)
T ss_dssp TTCC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH
T ss_pred HcCCCcC-CHHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHH
Confidence 3445544 3566788888999999999888753 12445667788889999988888766 46677777
Q ss_pred HHHHHccC-CHhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004339 88 LGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 148 (760)
Q Consensus 88 la~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 148 (760)
+...+... ...-|. .....+. ..+.-...+...|...|.++..+.++..++.
T Consensus 75 ~~~~l~~~~e~~la~-i~~~~~~--------~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~ 127 (336)
T d1b89a_ 75 VCFACVDGKEFRLAQ-MCGLHIV--------VHADELEELINYYQDRGYFEELITMLEAALG 127 (336)
T ss_dssp HHHHHHHTTCHHHHH-HTTTTTT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHhCcHHHHHH-HHHHHhh--------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Confidence 77766633 332221 1110011 1244445566777778888888888887765
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