Citrus Sinensis ID: 004348
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 759 | 2.2.26 [Sep-21-2011] | |||||||
| B9DGD6 | 743 | Acetate--CoA ligase ACS, | yes | no | 0.889 | 0.908 | 0.830 | 0.0 | |
| Q9NR19 | 701 | Acetyl-coenzyme A synthet | yes | no | 0.824 | 0.893 | 0.572 | 0.0 | |
| Q9QXG4 | 701 | Acetyl-coenzyme A synthet | yes | no | 0.824 | 0.893 | 0.563 | 0.0 | |
| Q056J9 | 654 | Acetyl-coenzyme A synthet | yes | no | 0.814 | 0.944 | 0.558 | 0.0 | |
| Q72LY9 | 661 | Acetyl-coenzyme A synthet | yes | no | 0.823 | 0.945 | 0.553 | 0.0 | |
| Q04P35 | 654 | Acetyl-coenzyme A synthet | yes | no | 0.814 | 0.944 | 0.558 | 0.0 | |
| Q8EYG2 | 661 | Acetyl-coenzyme A synthet | yes | no | 0.823 | 0.945 | 0.552 | 0.0 | |
| Q07VK4 | 648 | Acetyl-coenzyme A synthet | yes | no | 0.803 | 0.941 | 0.563 | 0.0 | |
| A0L576 | 644 | Acetyl-coenzyme A synthet | yes | no | 0.807 | 0.951 | 0.551 | 0.0 | |
| Q6FYL4 | 652 | Acetyl-coenzyme A synthet | yes | no | 0.808 | 0.941 | 0.545 | 0.0 |
| >sp|B9DGD6|ACS_ARATH Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/695 (83%), Positives = 634/695 (91%), Gaps = 20/695 (2%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663
F GYYF+GDGCS SGHRIGTAEVESALV HPQCAEAAVVG+E
Sbjct: 588 FAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIE 647
Query: 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723
HEVKGQGIYAFVTL+EGVPYSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIM
Sbjct: 648 HEVKGQGIYAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIM 707
Query: 724 RRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
RRILRKIASRQL+ELGDTSTLADP VVDQLIALAD
Sbjct: 708 RRILRKIASRQLEELGDTSTLADPSVVDQLIALAD 742
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Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation. May play a limited role in the biosynthesis of lipids. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q9NR19|ACSA_HUMAN Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/665 (57%), Positives = 463/665 (69%), Gaps = 39/665 (5%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P + SR A VPS Q+Y E+++RSVE+P FW DIA EFYWK N DV KG
Sbjct: 31 PPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCPGPFLRYNFDVTKGK 90
Query: 189 VKIEWFKGGITNICYNCLDRNI-EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN 247
+ IEW KG TNICYN LDRN+ E LGDKVA YWE N+PG +TY QLL QVCQ +N
Sbjct: 91 IFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTQITYHQLLVQVCQFSN 150
Query: 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 307
L+ G++KGD V IY+PM+ EL +AMLACARIGA+HS+VFAGFSS+SL +RI+D +
Sbjct: 151 VLRKQGIQKGDRVAIYMPMIPELVVAMLACARIGALHSIVFAGFSSESLCERILDSSCSL 210
Query: 308 VITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN-------------QSAMT 354
+IT++A RG K ++LK++ D AL +C + G V C+ ++ QS
Sbjct: 211 LITTDAFYRGEKLVNLKELADEALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPI 270
Query: 355 REN-----TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ + W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT
Sbjct: 271 KRSCPDVQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTV 330
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
GGYM++ ATTFKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD
Sbjct: 331 GGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPD 390
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
R W IVDKYKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+
Sbjct: 391 VNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWY 450
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG 589
VVG RCPI DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EG
Sbjct: 451 HRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEG 510
Query: 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS--------------- 634
E GYL K WPG RT+YG+HER+ETTYFK FPGYY TGDGC
Sbjct: 511 EAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQRDQDGYYWITGRIDD 570
Query: 635 ----SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKS 690
SGH + TAEVESALV H AEAAVVG H VKG+ +Y FVTL +G +S +L +
Sbjct: 571 MLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPKLTEE 630
Query: 691 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 750
L +R++IG A PD I APGLPKTRSGKIMRR+LRKIA D LGD ST+ADP V+
Sbjct: 631 LKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDMSTVADPSVI 689
Query: 751 DQLIA 755
L +
Sbjct: 690 SHLFS 694
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Activates acetate so that it can be used for lipid synthesis or for energy generation. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9QXG4|ACSA_MOUSE Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/665 (56%), Positives = 464/665 (69%), Gaps = 39/665 (5%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P + R A VPS Q+Y E+++RSVE+P FW +IA EFYWK N DV KG
Sbjct: 31 PPPEVRRSAHVPSLQRYRELHRRSVEEPREFWGNIAKEFYWKTACPGPFLQYNFDVTKGK 90
Query: 189 VKIEWFKGGITNICYNCLDRNI-EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN 247
+ EW KG TNICYN LDRN+ E LGDKVA YWE N+PG +TY +LL QVCQ +N
Sbjct: 91 IFTEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTKITYRELLVQVCQFSN 150
Query: 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 307
L+ G++KGD V IY+PM++EL +AMLACAR+GA+HS+VFAGFS++SL +RI+D +
Sbjct: 151 VLRKQGIQKGDRVAIYMPMILELVVAMLACARLGALHSIVFAGFSAESLCERILDSSCCL 210
Query: 308 VITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE---------NQSAMTRENT 358
+IT++A RG K ++LK++ D +L++C + G V C+ + N S
Sbjct: 211 LITTDAFYRGEKLVNLKELADESLEKCREKGFPVRCCIVVKHLGRAELGMNDSPSQSPPV 270
Query: 359 K---------WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
K W +G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT
Sbjct: 271 KRPCPDVQICWNEGVDLWWHELMQQAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTI 330
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
GGYM++ ATTFKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD
Sbjct: 331 GGYMLYVATTFKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPD 390
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
GR W IVDKYKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+
Sbjct: 391 EGRLWSIVDKYKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWY 450
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG 589
VVG RCPI DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EG
Sbjct: 451 HRVVGSQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEG 510
Query: 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS--------------- 634
E GYL K WPG RT+YG+H R+ETTYFK FPGYY TGDGC
Sbjct: 511 EAEGYLVFKQPWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRRDQDGYYWITGRIDD 570
Query: 635 ----SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKS 690
SGH + TAEVESALV H AEAAVVG H VKG+ +Y FVTL +G +S L +
Sbjct: 571 MLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPTLTEE 630
Query: 691 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 750
L +R++IG A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ADP V+
Sbjct: 631 LKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVADPSVI 689
Query: 751 DQLIA 755
+ L +
Sbjct: 690 NHLFS 694
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Activates acetate so that it can be used for lipid synthesis or for energy generation. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q056J9|ACSA_LEPBL Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/652 (55%), Positives = 453/652 (69%), Gaps = 34/652 (5%)
Query: 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185
IVLPS +F + + + + + Y +YK S+E+P FWA A+ W +KW + + N D +
Sbjct: 6 IVLPSAEFKKNSNI-TLKDYKSLYKESIENPNKFWAKEANRLTWFKKWTKVL---NHDFK 61
Query: 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQL 245
N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY + ++V +
Sbjct: 62 --NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPSESKVLTYYDVYREVNRF 119
Query: 246 ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKP 305
AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L RI DCKP
Sbjct: 120 ANVLKKYGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEALQSRIDDCKP 179
Query: 306 KVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365
K+++T++ RG K I LK VD AL++ + +V V N+S + W+DGRD
Sbjct: 180 KLIVTADGGFRGGKPIELKRNVDIALEKSKEDVKTVIVVRRTGNESGLV-----WKDGRD 234
Query: 366 IWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423
W+ ++ P C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++ TF Y
Sbjct: 235 YWYHFLISDPDLSPYCKPESMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLGVNLTFHYV 294
Query: 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483
FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR WD++DKY V
Sbjct: 295 FDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFWDVIDKYGVN 354
Query: 484 IFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543
IFYTAPT +R+LMR+G +V + + SLR+LGSVGEPINP AW W+F ++G +CPI DT
Sbjct: 355 IFYTAPTAIRALMREGLTHVQKRNLSSLRLLGSVGEPINPEAWEWYFKIIGKEKCPIVDT 414
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSW 601
WWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE SG LCIKS W
Sbjct: 415 WWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEINDKGEVSGNLCIKSPW 474
Query: 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTA 642
P R +YGD +R+ TYF F GYYFTGDG SGHRIG+A
Sbjct: 475 PSMMRGVYGDSKRFFDTYFSQFKGYYFTGDGARRDKDGYYWITGRVDDVINVSGHRIGSA 534
Query: 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF 702
EVESALV + AEAAVVG H++KGQGIYA+VT+ EG+ ++ L+K LV V K IG
Sbjct: 535 EVESALVENRSVAEAAVVGFPHDIKGQGIYAYVTVKEGIATNDTLKKELVAIVEKVIGKI 594
Query: 703 AAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
A PD IHWAP LPKTRSGKIMRRILRKIAS + + LGDTSTLADP VV +LI
Sbjct: 595 ARPDVIHWAPSLPKTRSGKIMRRILRKIASGEFEGLGDTSTLADPSVVQKLI 646
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q72LY9|ACSA_LEPIC Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/661 (55%), Positives = 455/661 (68%), Gaps = 36/661 (5%)
Query: 117 EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQR 176
E ++ E +V PS +F + A + S + Y +YK S+E+P FWA A+ W +KW +
Sbjct: 6 EVMAKER--VVSPSAEFKKNANI-SLKNYKSLYKESIENPNKFWAREANRLIWFKKW-TK 61
Query: 177 VCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYS 236
V S + N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY
Sbjct: 62 VLSHDFK----NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPTESRVLTYY 117
Query: 237 QLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSL 296
+ ++V + AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L
Sbjct: 118 DVYREVNRFANILKKFGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEAL 177
Query: 297 AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356
RI DCKPK+V+T++ RG K I LK VD AL++ + +V V N+S +T
Sbjct: 178 QSRIDDCKPKLVVTADGGFRGGKPIELKKNVDLALEKSKEKVKTVIVVRRTGNESGLT-- 235
Query: 357 NTKWQDGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
W+DG+D W+ ++ P+ C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++
Sbjct: 236 ---WKDGQDYWYHFLMNDPELSAYCKPEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYLL 292
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSW 474
TF Y FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR W
Sbjct: 293 GANLTFHYVFDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFW 352
Query: 475 DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVG 534
D++DKY V IFYTAPT +R+LMR+G ++ + SLR+LGSVGEPINP AW W+F +G
Sbjct: 353 DVIDKYGVNIFYTAPTAIRALMREGLNHIQKRDLSSLRLLGSVGEPINPEAWEWYFKNIG 412
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECS 592
+CPI DTWWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE S
Sbjct: 413 KGKCPIVDTWWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEITDKGEVS 472
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------ 634
G LCIK WP R +YGD +R+ TYF F GYYFTGDG
Sbjct: 473 GNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARRDKDGYFWITGRVDDVIN 532
Query: 635 -SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
SGHRIG+AEVESALV + AEAAVVG H++KGQGIYA+VT+ EGV ++ L+K L+
Sbjct: 533 VSGHRIGSAEVESALVENKSVAEAAVVGFPHDIKGQGIYAYVTVKEGVTTNDVLKKELIS 592
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 753
V K IG A PD IHWAPGLPKTRSGKIMRRILRKIAS + + LGDTSTLADP VV +L
Sbjct: 593 TVEKMIGKIARPDVIHWAPGLPKTRSGKIMRRILRKIASGEFEGLGDTSTLADPSVVQKL 652
Query: 754 I 754
I
Sbjct: 653 I 653
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q04P35|ACSA_LEPBJ Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/652 (55%), Positives = 453/652 (69%), Gaps = 34/652 (5%)
Query: 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185
IVLPS +F + + + + + Y +YK S+E+P FWA A+ W +KW + + N D +
Sbjct: 6 IVLPSAEFKKNSNI-TLKDYKSLYKESIENPNKFWAKEANRLTWFKKWTKVL---NHDFK 61
Query: 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQL 245
N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY + ++V +
Sbjct: 62 --NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPSESKVLTYYDVYREVNRF 119
Query: 246 ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKP 305
AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L RI DCKP
Sbjct: 120 ANVLKKYGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEALQSRIDDCKP 179
Query: 306 KVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365
K+++T++ RG K I LK VD AL++ + +V V N+S + W+DGRD
Sbjct: 180 KLIVTADGGFRGGKPIELKRNVDIALEKSKEDVKTVIVVRRTGNESGLV-----WKDGRD 234
Query: 366 IWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423
W+ ++ P C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++ TF Y
Sbjct: 235 YWYHFLIGDPDLSPYCKPESMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLGVNLTFHYV 294
Query: 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483
FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR WD++DKY V
Sbjct: 295 FDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFWDVIDKYGVN 354
Query: 484 IFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543
IFYTAPT +R+LMR+G +V + + SLR+LGSVGEPINP AW W+F ++G +CPI DT
Sbjct: 355 IFYTAPTAIRALMREGLTHVQKRNLSSLRLLGSVGEPINPEAWEWYFKIIGKEKCPIVDT 414
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSW 601
WWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE SG LCIKS W
Sbjct: 415 WWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEINDKGEVSGNLCIKSPW 474
Query: 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTA 642
P R +YGD +R+ TYF F GYYFTGDG SGHRIG+A
Sbjct: 475 PSMMRGVYGDSKRFFDTYFSQFKGYYFTGDGARRDKDGYYWITGRVDDVINVSGHRIGSA 534
Query: 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF 702
EVESALV + AEAAVVG H++KGQGIYA+VT+ EG+ ++ L+K LV V K IG
Sbjct: 535 EVESALVENRSVAEAAVVGFPHDIKGQGIYAYVTVKEGIATNDTLKKELVAIVEKVIGKI 594
Query: 703 AAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
A PD IHWAP LPKTRSGKIMRRILRKIAS + + LGDTSTLADP VV +LI
Sbjct: 595 ARPDVIHWAPSLPKTRSGKIMRRILRKIASGEFEGLGDTSTLADPSVVQKLI 646
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8EYG2|ACSA_LEPIN Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/661 (55%), Positives = 454/661 (68%), Gaps = 36/661 (5%)
Query: 117 EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQR 176
E ++ E +V PS +F + A + S + Y +YK S+E+P FWA A+ W +KW +
Sbjct: 6 EVMAKER--VVSPSAEFKKNANI-SLKNYKSLYKESIENPNKFWAREANRLIWFKKW-TK 61
Query: 177 VCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYS 236
V S + N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY
Sbjct: 62 VLSHDFK----NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPTESRVLTYY 117
Query: 237 QLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSL 296
+ ++V + AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L
Sbjct: 118 DVYREVNRFANILKKFGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEAL 177
Query: 297 AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356
RI DCKPK+V+T++ RG K I LK VD AL++ + +V V N+S +T
Sbjct: 178 QSRIDDCKPKLVVTADGGFRGGKPIELKKNVDLALEKSKEKVKTVIVVRRTGNESGLT-- 235
Query: 357 NTKWQDGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
W+DG+D W+ ++ P+ C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++
Sbjct: 236 ---WKDGQDYWYHFLMNDPELSAYCKPEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYLL 292
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSW 474
TF Y FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR W
Sbjct: 293 GANLTFHYVFDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFW 352
Query: 475 DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVG 534
D++DKY V IFYTAPT +R+LMR+G ++ + SLR+LGSVGEPINP AW W+F +G
Sbjct: 353 DVIDKYGVNIFYTAPTAIRALMREGLNHIQKRDLSSLRLLGSVGEPINPEAWEWYFKNIG 412
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECS 592
+CPI DTWWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE S
Sbjct: 413 KGKCPIVDTWWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEITDKGEVS 472
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------ 634
G LCIK WP R +YGD +R+ TYF F GYYFTGDG
Sbjct: 473 GNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARRDKDGYFWITGRVDDVIN 532
Query: 635 -SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
SGHRIG+AEVESALV + AEAAVVG H++KGQGIYA+VT+ EGV ++ L+K L+
Sbjct: 533 VSGHRIGSAEVESALVENKSVAEAAVVGFPHDIKGQGIYAYVTVKEGVTTNDVLKKELIS 592
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 753
V K IG A PD IHWAPGLPKTRSGKIMRRILRKI S + + LGDTSTLADP VV +L
Sbjct: 593 TVEKMIGKIARPDVIHWAPGLPKTRSGKIMRRILRKIVSGEFEGLGDTSTLADPSVVQKL 652
Query: 754 I 754
I
Sbjct: 653 I 653
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q07VK4|ACSA_RHOP5 Acetyl-coenzyme A synthetase OS=Rhodopseudomonas palustris (strain BisA53) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/642 (56%), Positives = 449/642 (69%), Gaps = 32/642 (4%)
Query: 132 DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKI 191
+++++A V KY EMY RSV DP GFW D A W + + EN GNV I
Sbjct: 11 EWAKRAFVDD-AKYQEMYARSVNDPNGFWKDEAQRVDWIKPFS---VVENTSFAPGNVSI 66
Query: 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD 251
+WF+ G+ N+ NC+DR+++ D+VAI WE +DP +TY QL +VC++AN L++
Sbjct: 67 KWFEDGVLNVAANCIDRHLK-DRADQVAIIWEGDDPSESRKITYRQLHDEVCKMANVLRN 125
Query: 252 IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
V+KGD V IYLPM+ E AMLACARIGA+HSVVF GFS DSLAQRI DC KVVIT+
Sbjct: 126 RNVQKGDRVTIYLPMIPEAAFAMLACARIGAIHSVVFGGFSPDSLAQRITDCASKVVITA 185
Query: 312 NAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371
+ RG + + LK VDAAL + + +VD + + A + D RD W+ +
Sbjct: 186 DEGLRGGRTVPLKANVDAALRKSS----AVDWVVVVKRTGA----DVFMDDVRDFWYHEA 237
Query: 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
T+C VE + AEDPLF+LYTSGSTG+PKGVLHTTGGY+V + T +Y FDY DV
Sbjct: 238 AEMVTTECPVEPMHAEDPLFILYTSGSTGQPKGVLHTTGGYLVFASMTHQYVFDYHDGDV 297
Query: 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
YWCTAD GW+TGHSY+ YGP+ NGA+ ++FEG P YP + R W+++DK++V IFYTAPT
Sbjct: 298 YWCTADVGWVTGHSYILYGPLANGATTLMFEGVPNYPTNSRFWEVIDKHQVNIFYTAPTA 357
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+R+LM+ G+E VT+ SRKSLR+LGSVGEPINP AW W+ VVG+ RCPI DTWWQTETGG
Sbjct: 358 IRALMQGGDEPVTKTSRKSLRLLGSVGEPINPEAWEWYHRVVGEDRCPIVDTWWQTETGG 417
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
+ITPLPGA KPGSAT PFFGV P I+D +EGEC+G LC+ SWPG RT+YGD
Sbjct: 418 ILITPLPGATKLKPGSATRPFFGVVPQIMDADANVLEGECTGNLCLAKSWPGQMRTVYGD 477
Query: 612 HERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHP 652
H R+E TYF +PG YFTGDGC SGHR+GTAEVES+LV+HP
Sbjct: 478 HARFEQTYFSAYPGKYFTGDGCRRDADGYYWITGRVDDVINVSGHRMGTAEVESSLVAHP 537
Query: 653 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 712
Q +EAAVVG H++KGQGIYA+VTL+ GV +E LRK LV VRK IG A+PD I +AP
Sbjct: 538 QVSEAAVVGYPHDIKGQGIYAYVTLMTGVEPTEALRKELVAWVRKDIGPIASPDLIQFAP 597
Query: 713 GLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
GLPKTRSGKIMRRILRKIA + LGDTSTLADPGVV +L+
Sbjct: 598 GLPKTRSGKIMRRILRKIAEDESSTLGDTSTLADPGVVSELV 639
|
Rhodopseudomonas palustris (strain BisA53) (taxid: 316055) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A0L576|ACSA_MAGSM Acetyl-coenzyme A synthetase OS=Magnetococcus sp. (strain MC-1) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/649 (55%), Positives = 459/649 (70%), Gaps = 36/649 (5%)
Query: 127 VLPSD-DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA-SEFYWKEKWGQRVCSENLDV 184
V P D + + AL+ + ++Y EMYKRS++DPA FWA+ A + W +KW + + D+
Sbjct: 6 VYPVDPNVAANALI-NEEQYQEMYKRSIDDPAAFWAEQAEARIDWFKKWDNVL---DFDL 61
Query: 185 RKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQ 244
RKG++K WF+G N+ YNC+DR++E GDKVAI WE ++P D +TY +L V +
Sbjct: 62 RKGHIK--WFEGAKLNVSYNCIDRHLEK-RGDKVAILWEGDNPAADRKITYRELSALVNK 118
Query: 245 LANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCK 304
AN LK GVKKGD V IY+PM+ E +AMLAC RIGAVHS+VF GFS D+L RI+D +
Sbjct: 119 FANALKARGVKKGDRVCIYMPMIPEAAVAMLACTRIGAVHSIVFGGFSPDALRDRIIDAE 178
Query: 305 PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364
+VVIT++ RG K I L+ V+ AL +C +V C ++ T+ +W +GR
Sbjct: 179 CRVVITADGGMRGSKKIPLRKNVETALAQCP----NVHTCFVVQD----TQLEIEWTEGR 230
Query: 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424
D+W+ + + C E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY+++ + T +Y F
Sbjct: 231 DVWYHEAIAAASADCPPEEMDAEDPLFVLYTSGSTGKPKGVLHTTGGYLLYASITHQYIF 290
Query: 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 484
DY D+YWCTAD GW+TGH+Y+ YGP+ NGA+ ++FEG PTYPD+ R W +VDK++V+I
Sbjct: 291 DYHEDDIYWCTADVGWVTGHTYIVYGPLANGATTLMFEGVPTYPDASRFWQVVDKHQVSI 350
Query: 485 FYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544
FYTAPT +RS+M G+ V SR+SLR+LGSVGEPINP AW W+++VVG+ RCPI DTW
Sbjct: 351 FYTAPTAIRSIMSQGDALVKATSRQSLRILGSVGEPINPEAWEWYYHVVGEGRCPIVDTW 410
Query: 545 WQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604
WQTETGG +ITPLPGA P KPGSAT PFFGV P ++ +G E+EG C G L + WPG
Sbjct: 411 WQTETGGILITPLPGATPLKPGSATRPFFGVNPKVLSNEGKEMEGPCEGILVLDHPWPGM 470
Query: 605 FRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVE 645
RT+YGDH+R+ TYF +PGYYF GDGC SGHR+GTAEVE
Sbjct: 471 MRTVYGDHDRFINTYFANYPGYYFCGDGCRRDEDGYYWITGRVDDVINVSGHRLGTAEVE 530
Query: 646 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAP 705
SALV H Q AEAAVVG+ HE+KGQGIYA+VTL+ GV S+ L+ LV VRK+IG A+
Sbjct: 531 SALVLHDQVAEAAVVGMPHEIKGQGIYAYVTLMSGVEPSDALKTELVKLVRKEIGPIASL 590
Query: 706 DKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 754
D I +APGLPKTRSGKIMRRILRKIA+ ++D LGDTSTLADP VV LI
Sbjct: 591 DVIQFAPGLPKTRSGKIMRRILRKIAAHEVDTLGDTSTLADPSVVQNLI 639
|
Magnetococcus sp. (strain MC-1) (taxid: 156889) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q6FYL4|ACSA_BARQU Acetyl-coenzyme A synthetase OS=Bartonella quintana (strain Toulouse) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/643 (54%), Positives = 447/643 (69%), Gaps = 29/643 (4%)
Query: 132 DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKI 191
D + AL+ + + Y + Y+ S+ DP FWA W + + +V + + + G+V I
Sbjct: 11 DIKKNALI-NEETYQKWYRESINDPEAFWAKHGQRIEWFKPY-TKVKNTSFN---GDVSI 65
Query: 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD 251
+W++ GITN+ YNC+DR+++ G+ +A+ WE N+P D +TY++L + VC+ AN LK+
Sbjct: 66 QWYEDGITNVAYNCIDRHLKNS-GNHIALIWEGNNPYHDKKITYNELYEHVCRFANILKN 124
Query: 252 IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
GVKKGD V IYLPM+ E AMLACARIGA+HSV+FAGFSS+++A RI+DCK +IT+
Sbjct: 125 HGVKKGDRVTIYLPMIPEAAYAMLACARIGAIHSVIFAGFSSEAIADRIVDCKSTFIITA 184
Query: 312 NAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371
+ RG K I LK+ +D A+D A+ G+ V+ L S W GRD W+ +
Sbjct: 185 DQGLRGGKLIKLKNNIDHAIDIAARRGVHVNQVLVIRRTSG----TIDWVKGRDFWYHEE 240
Query: 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
+ T C E ++AEDPLF+LYTSGSTGKPKGVLHTT GY+V+ + T +Y FDY P ++
Sbjct: 241 ISHAKTDCPAEMMNAEDPLFILYTSGSTGKPKGVLHTTAGYLVYVSMTHQYVFDYHPGEI 300
Query: 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
YWCTAD GWI+GHSY+ YGP+ NGA+ ++FEG PT+PD GR W+IVDK+KV YTAPT
Sbjct: 301 YWCTADIGWISGHSYLIYGPLCNGATTLMFEGIPTFPDQGRFWEIVDKHKVNTLYTAPTA 360
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+R+LM GN +V R SLR+LG+VGEPINP AW+WF++ VGD+RCPI DTWWQTETGG
Sbjct: 361 IRALMGAGNSFVEHSKRTSLRLLGTVGEPINPEAWKWFYHTVGDNRCPILDTWWQTETGG 420
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
MITPLPGA K GSAT PFFGVQ I+D +G +EGE G LCI SWPG RTLY D
Sbjct: 421 HMITPLPGATQLKAGSATHPFFGVQLQIIDGEGNVLEGEAEGNLCIIDSWPGQMRTLYND 480
Query: 612 HERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHP 652
HER+ TYF + G YFTGDGC SGHR+GTAE+ESALVSHP
Sbjct: 481 HERFIETYFSTYKGKYFTGDGCKRDNDGYYWITGRIDDILNVSGHRLGTAEIESALVSHP 540
Query: 653 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 712
+EAAVVG H +KGQGIY+FVTL+EG+ SEEL K L+ V+K+IG+ A DKI + P
Sbjct: 541 AISEAAVVGYPHPIKGQGIYSFVTLMEGITPSEELYKDLIQHVKKEIGSIALLDKIQFTP 600
Query: 713 GLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755
LPKTRSGKIMRRILRKIA D LGD STLA+P VVD LIA
Sbjct: 601 QLPKTRSGKIMRRILRKIAENDFDNLGDISTLAEPQVVDDLIA 643
|
Bartonella quintana (strain Toulouse) (taxid: 283165) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 759 | ||||||
| 225451691 | 708 | PREDICTED: acetyl-coenzyme A synthetase, | 0.890 | 0.954 | 0.858 | 0.0 | |
| 296082228 | 769 | unnamed protein product [Vitis vinifera] | 0.909 | 0.897 | 0.845 | 0.0 | |
| 255543445 | 749 | acetyl-CoA synthetase, putative [Ricinus | 0.893 | 0.905 | 0.846 | 0.0 | |
| 380042390 | 776 | acyl-activating enzyme 15 [Cannabis sati | 0.906 | 0.886 | 0.825 | 0.0 | |
| 356570289 | 752 | PREDICTED: acetyl-coenzyme A synthetase- | 0.891 | 0.900 | 0.831 | 0.0 | |
| 297805208 | 743 | AMP binding protein [Arabidopsis lyrata | 0.932 | 0.952 | 0.793 | 0.0 | |
| 224128712 | 684 | predicted protein [Populus trichocarpa] | 0.876 | 0.972 | 0.844 | 0.0 | |
| 356560404 | 752 | PREDICTED: acetyl-coenzyme A synthetase- | 0.891 | 0.900 | 0.827 | 0.0 | |
| 145323645 | 743 | acetyl-CoA synthetase [Arabidopsis thali | 0.889 | 0.908 | 0.830 | 0.0 | |
| 15239431 | 693 | acetyl-CoA synthetase [Arabidopsis thali | 0.880 | 0.963 | 0.835 | 0.0 |
| >gi|225451691|ref|XP_002278518.1| PREDICTED: acetyl-coenzyme A synthetase, cytoplasmic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/695 (85%), Positives = 641/695 (92%), Gaps = 19/695 (2%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
K +KT + LRHV+S++ PSGAGK+S+LNAVILGEAL+SE +D+V PS DFS QALV SP
Sbjct: 13 KILKTSNHLRHVDSMSVKPSGAGKVSQLNAVILGEALASEAHDLVFPSRDFSSQALVSSP 72
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
+KY EMYKRSVEDPAGFW+DIAS+FYWKEKW Q VCSENLDVR GN+KIEWFKGG TNIC
Sbjct: 73 EKYEEMYKRSVEDPAGFWSDIASDFYWKEKWSQPVCSENLDVRNGNIKIEWFKGGRTNIC 132
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLDRNIE+G G KVAIYWE N+PG DA+LTY+QLL +VCQLANYLKD+GV+KGDAV+I
Sbjct: 133 YNCLDRNIESGNGGKVAIYWEGNEPGFDASLTYAQLLDKVCQLANYLKDMGVRKGDAVVI 192
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVITSNAVKRGPK I
Sbjct: 193 YLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITSNAVKRGPKVIS 252
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LKDIVDAAL E AK+GISVD CLTYENQSAM RE TKWQ+GRDIWWQDVVPKYPT C+VE
Sbjct: 253 LKDIVDAALVESAKNGISVDACLTYENQSAMKRETTKWQEGRDIWWQDVVPKYPTTCDVE 312
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYKPSDVYWCTADCGWIT
Sbjct: 313 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKPSDVYWCTADCGWIT 372
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVT+GPMLNGA+V+VFEGAP YPDSGR WDIVDKYKVTIFYTAPTLVRSLMRDG+EY
Sbjct: 373 GHSYVTFGPMLNGATVIVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY 432
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 433 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 492
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG+EIEGEC+GYLC+KSSWPGAFRTLYGDH+RYETTYFK
Sbjct: 493 QKPGSATFPFFGVQPVIVDEKGIEIEGECNGYLCVKSSWPGAFRTLYGDHDRYETTYFKA 552
Query: 623 FPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663
FPGYYF+GDGCS SGHRIGTAEVESALVSHP+CAEAAVVGVE
Sbjct: 553 FPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGVE 612
Query: 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723
HEVKGQGIYAFVTLVEGVPYSEELRKSL++ VR QIGAFAAPD+IHWAPGLPKTRSGKIM
Sbjct: 613 HEVKGQGIYAFVTLVEGVPYSEELRKSLIMTVRSQIGAFAAPDRIHWAPGLPKTRSGKIM 672
Query: 724 RRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
RRILRKIASRQL+ELGDTSTLADP VVD+LI LAD
Sbjct: 673 RRILRKIASRQLNELGDTSTLADPNVVDELIKLAD 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082228|emb|CBI21233.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/711 (84%), Positives = 649/711 (91%), Gaps = 21/711 (2%)
Query: 67 VVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDI 126
V MA+S +++ K +KT + LRHV+S++ PSGAGK+S+LNAVILGEAL+SE +D+
Sbjct: 60 VTMATSPASSSP--QRKILKTSNHLRHVDSMSVKPSGAGKVSQLNAVILGEALASEAHDL 117
Query: 127 VLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRK 186
V PS DFS QALV SP+KY EMYKRSVEDPAGFW+DIAS+FYWKEKW Q VCSENLDVR
Sbjct: 118 VFPSRDFSSQALVSSPEKYEEMYKRSVEDPAGFWSDIASDFYWKEKWSQPVCSENLDVRN 177
Query: 187 GNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLA 246
GN+KIEWFKGG TNICYNCLDRNIE+G G KVAIYWE N+PG DA+LTY+QLL +VCQLA
Sbjct: 178 GNIKIEWFKGGRTNICYNCLDRNIESGNGGKVAIYWEGNEPGFDASLTYAQLLDKVCQLA 237
Query: 247 NYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPK 306
NYLKD+GV+KGDAV+IYLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPK
Sbjct: 238 NYLKDMGVRKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPK 297
Query: 307 VVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDI 366
VVITSNAVKRGPK I LKDIVDAAL E AK+GISVD CLTYENQSAM RE TKWQ+GRDI
Sbjct: 298 VVITSNAVKRGPKVISLKDIVDAALVESAKNGISVDACLTYENQSAMKRETTKWQEGRDI 357
Query: 367 WWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426
WWQDVVPKYPT C+VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDY
Sbjct: 358 WWQDVVPKYPTTCDVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDY 417
Query: 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
KPSDVYWCTADCGWITGHSYVT+GPMLNGA+V+VFEGAP YPDSGR WDIVDKYKVTIFY
Sbjct: 418 KPSDVYWCTADCGWITGHSYVTFGPMLNGATVIVFEGAPNYPDSGRCWDIVDKYKVTIFY 477
Query: 487 TAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546
TAPTLVRSLMRDG+EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ
Sbjct: 478 TAPTLVRSLMRDGDEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 537
Query: 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606
TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG+EIEGEC+GYLC+KSSWPGAFR
Sbjct: 538 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGIEIEGECNGYLCVKSSWPGAFR 597
Query: 607 TLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESA 647
TLYGDH+RYETTYFK FPGYYF+GDGCS SGHRIGTAEVESA
Sbjct: 598 TLYGDHDRYETTYFKAFPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESA 657
Query: 648 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 707
LVSHP+CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSL++ VR QIGAFAAPD+
Sbjct: 658 LVSHPKCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLIMTVRSQIGAFAAPDR 717
Query: 708 IHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
IHWAPGLPKTRSGKIMRRILRKIASRQL+ELGDTSTLADP VVD+LI LAD
Sbjct: 718 IHWAPGLPKTRSGKIMRRILRKIASRQLNELGDTSTLADPNVVDELIKLAD 768
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543445|ref|XP_002512785.1| acetyl-CoA synthetase, putative [Ricinus communis] gi|223547796|gb|EEF49288.1| acetyl-CoA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1245 bits (3221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/699 (84%), Positives = 641/699 (91%), Gaps = 21/699 (3%)
Query: 81 NSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVP 140
N TE+ LRHVES+A+ P+GAGKI RLNAVILGE+L+SEE+D+V P+DDFSR+AL+
Sbjct: 50 NHNLKTTENHLRHVESMATLPNGAGKIPRLNAVILGESLASEEDDLVFPNDDFSRRALLS 109
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQ--RVCSENLDVRKGNVKIEWFKGGI 198
SPQ+YLEMYK+S+EDPAGFW++IAS+FYWK++WGQ VCSEN DVR+G++KIEWFKGG+
Sbjct: 110 SPQQYLEMYKKSIEDPAGFWSEIASQFYWKQRWGQGQPVCSENFDVRQGSIKIEWFKGGV 169
Query: 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258
TNICYNCLDRN+E+G +K+A+YWE N+PG + +LTYSQLLQ+VCQLANYLKD GVKKGD
Sbjct: 170 TNICYNCLDRNVESGNANKIALYWEPNEPGSEDSLTYSQLLQRVCQLANYLKDKGVKKGD 229
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
AV+IYLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVIT NAVKRG
Sbjct: 230 AVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITCNAVKRGS 289
Query: 319 KAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK 378
K I LKDIVDAAL E AK+G+SV VCLTYEN SAM RE+TKWQDGRD+WWQD VP YPT
Sbjct: 290 KVIPLKDIVDAALVESAKNGVSVGVCLTYENLSAMKRESTKWQDGRDVWWQDFVPNYPTT 349
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438
CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKPSDVYWCTADC
Sbjct: 350 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDVYWCTADC 409
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
GWITGHSYVTYGPMLNGA+ V+FEGAP YPDSGR WDIVDK++VTIFYTAPTLVRSLMRD
Sbjct: 410 GWITGHSYVTYGPMLNGATNVIFEGAPNYPDSGRCWDIVDKFRVTIFYTAPTLVRSLMRD 469
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
G+EYVTRYSRKSLR+LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP
Sbjct: 470 GDEYVTRYSRKSLRILGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 529
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC+KSSWPGAFRTLYGDHERYETT
Sbjct: 530 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCVKSSWPGAFRTLYGDHERYETT 589
Query: 619 YFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659
YFKPFPGYYF+GDGCS SGHRIGTAEVESALVSHPQCAEAAV
Sbjct: 590 YFKPFPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 649
Query: 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719
VGVEHEVKGQGIYAFVTLVEGV YSEELRKSL+L VR QIGAFAAPDKIHWAPGLPKTRS
Sbjct: 650 VGVEHEVKGQGIYAFVTLVEGVSYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRS 709
Query: 720 GKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
GKIMRRILRKIASRQLDELGDTSTLADP VVDQLIALAD
Sbjct: 710 GKIMRRILRKIASRQLDELGDTSTLADPNVVDQLIALAD 748
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042390|gb|AFD33359.1| acyl-activating enzyme 15 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1238 bits (3203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/710 (82%), Positives = 645/710 (90%), Gaps = 22/710 (3%)
Query: 69 MASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVL 128
MASS ++ N N+ ++T + LRHV+S+A+ PSGAGKI RLNAVILGEAL++EEND+V
Sbjct: 70 MASSPSHSRNNND---IRTINHLRHVDSMATMPSGAGKIPRLNAVILGEALATEENDLVF 126
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P+D+FS+QA VPSPQKYLEMYKRS+EDPAGFW++IAS+FYWK+KW V SENLDV KG
Sbjct: 127 PTDEFSQQAHVPSPQKYLEMYKRSIEDPAGFWSEIASQFYWKQKWDDSVYSENLDVSKGR 186
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
V IEWFKGGITNICYNCLD+N+EAGLGDK+A+YWE ND G D +LTYSQLL +VCQLANY
Sbjct: 187 VNIEWFKGGITNICYNCLDKNVEAGLGDKIALYWEGNDTGFDDSLTYSQLLHKVCQLANY 246
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
LKD+GV+KGDAV+IYLPML+ELPI MLACARIGAVHSVVFAGFS++SL+QRI+DCKPKVV
Sbjct: 247 LKDMGVQKGDAVVIYLPMLLELPITMLACARIGAVHSVVFAGFSAESLSQRIIDCKPKVV 306
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT NAVKRGPK IHLKDIVDAAL E AK+G+ +D CL YENQ AM R+ TKWQDGRDIWW
Sbjct: 307 ITCNAVKRGPKIIHLKDIVDAALVESAKTGVPIDTCLVYENQLAMKRDITKWQDGRDIWW 366
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
QDV+PKYPT+C VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKP
Sbjct: 367 QDVIPKYPTECAVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKP 426
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
SDVYWCTADCGWITGHSYVTYGP+LNGAS +VFEGAP YPDSGR WDIVDKYKVTIFYTA
Sbjct: 427 SDVYWCTADCGWITGHSYVTYGPLLNGASCIVFEGAPNYPDSGRCWDIVDKYKVTIFYTA 486
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PTLVRSLMRDG+EYVTRYSRKSLR+LGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTE
Sbjct: 487 PTLVRSLMRDGDEYVTRYSRKSLRILGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTE 546
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGGFMITPLPGAWPQKPGSATFPFFGV+PVIVDEKGVEIEGECSGYLC+K SWPGAFRTL
Sbjct: 547 TGGFMITPLPGAWPQKPGSATFPFFGVKPVIVDEKGVEIEGECSGYLCVKGSWPGAFRTL 606
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649
YGD+ERYETTYFKPF GYYFTGDGCS SGHRIGTAEVESALV
Sbjct: 607 YGDYERYETTYFKPFTGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 666
Query: 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 709
SHP+CAEAAVVG+EHEVKGQ IYAFVTLVEG PYSEELRKSL+L+VRKQIGAFAAP++IH
Sbjct: 667 SHPKCAEAAVVGIEHEVKGQAIYAFVTLVEGEPYSEELRKSLILSVRKQIGAFAAPERIH 726
Query: 710 WAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALADC 759
WAPGLPKTRSGKIMRRILRKIAS QLDELGDTSTLADP VV+QLI+L++C
Sbjct: 727 WAPGLPKTRSGKIMRRILRKIASGQLDELGDTSTLADPNVVEQLISLSNC 776
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570289|ref|XP_003553322.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/696 (83%), Positives = 639/696 (91%), Gaps = 19/696 (2%)
Query: 82 SKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPS 141
+ ++T +FLRHVES+ PSGAG IS LNAVILGE+L++EE+D VLPS+DF+ QA V S
Sbjct: 56 ASNLRTNNFLRHVESMKLLPSGAGHISHLNAVILGESLATEEDDFVLPSEDFASQANVQS 115
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
P++YL+MY RS+EDPAGFW++IASEFYWK++WG +VC EN DVRKGN+KIEWFKGGITNI
Sbjct: 116 PEQYLKMYNRSIEDPAGFWSEIASEFYWKQRWGDKVCDENFDVRKGNIKIEWFKGGITNI 175
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
CYNCLDRN+EAGLGDKVAIYWE N+PG+D TLTY++LLQQVCQLANYLKDIGVKKGDAVI
Sbjct: 176 CYNCLDRNVEAGLGDKVAIYWEGNEPGLDGTLTYTELLQQVCQLANYLKDIGVKKGDAVI 235
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IYLPMLMELPIAMLACARIGAVHSVVFAGFS+++L+QRI+DCKPKVVIT NAVKRGPK I
Sbjct: 236 IYLPMLMELPIAMLACARIGAVHSVVFAGFSAEALSQRIIDCKPKVVITCNAVKRGPKPI 295
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+LKDIVDAA+++ A++G+S+D CL YEN AM R +TKW++GRDIWWQDV+P+YPT C +
Sbjct: 296 YLKDIVDAAINDSAQNGVSIDKCLVYENPLAMKRVDTKWKEGRDIWWQDVIPQYPTTCPL 355
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKPSD+YWCTADCGWI
Sbjct: 356 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDIYWCTADCGWI 415
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TGHSYVTYGPMLNGASV+V+EGAP YPD+GR WDIVDKYKVTIFYTAPTLVRSLMRDG+
Sbjct: 416 TGHSYVTYGPMLNGASVIVYEGAPNYPDAGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDA 475
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
+VTRYSRKSLRVLGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTETGGFMITPLPGAW
Sbjct: 476 FVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAW 535
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
PQKPGSATFPFFGVQPVI+DEKGVEIEGEC+GYLC+K SWPGAFRTLYGDHERYETTYFK
Sbjct: 536 PQKPGSATFPFFGVQPVILDEKGVEIEGECNGYLCVKKSWPGAFRTLYGDHERYETTYFK 595
Query: 622 PFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGV 662
PF GYYF+GDGCS SGHRIGTAEVESALVSHPQCAEAAVVGV
Sbjct: 596 PFAGYYFSGDGCSRDKDGYHWLIGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 655
Query: 663 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 722
EHEVKGQGIYAFVT+V+GVPYSEELRK LVL VRKQIGAFAAPDKIHWAPGLPKTRSGKI
Sbjct: 656 EHEVKGQGIYAFVTVVDGVPYSEELRKDLVLIVRKQIGAFAAPDKIHWAPGLPKTRSGKI 715
Query: 723 MRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
MRRILRKIASRQLDELGDTSTLADP VV+QLI LAD
Sbjct: 716 MRRILRKIASRQLDELGDTSTLADPNVVNQLIELAD 751
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805208|ref|XP_002870488.1| AMP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316324|gb|EFH46747.1| AMP binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1230 bits (3183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/736 (79%), Positives = 650/736 (88%), Gaps = 28/736 (3%)
Query: 51 SSPPLKLIRQSGG---------GGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFP 101
SSP L ++ SG G ++ A+ + ++ + + ++LRHVES++ P
Sbjct: 7 SSPILTVVSSSGSLDPKISGSLGSRILPATQRSSPSDNLLLHRTMSSNYLRHVESMSQLP 66
Query: 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWA 161
SG GKIS+LNAV+LGE+L+SEEND++ PS +FS QALV SPQ+Y+EM+KRS++DPAGFW+
Sbjct: 67 SGTGKISQLNAVVLGESLASEENDLIFPSKEFSGQALVSSPQQYMEMHKRSMDDPAGFWS 126
Query: 162 DIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221
DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNICYNCLD+N+EAGLGDK AIY
Sbjct: 127 DIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNICYNCLDKNVEAGLGDKTAIY 186
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281
WE N+ GVDA+LTYS+LLQQVCQLANYLKD GVKKGDAV+IYLPMLMELPIAMLACARIG
Sbjct: 187 WEGNELGVDASLTYSELLQQVCQLANYLKDNGVKKGDAVVIYLPMLMELPIAMLACARIG 246
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
AVHSVVFAGFS+DSLAQRI+DCKPKV++T NAVKRGPK I+LK IVDAALD+ +K G+SV
Sbjct: 247 AVHSVVFAGFSADSLAQRIIDCKPKVILTCNAVKRGPKTINLKAIVDAALDQSSKDGVSV 306
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
+CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVEWVDAEDPLFLLYTSGSTGK
Sbjct: 307 GICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVEWVDAEDPLFLLYTSGSTGK 366
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
PKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWITGHSYVTYGPMLNGA+VVVF
Sbjct: 367 PKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWITGHSYVTYGPMLNGATVVVF 426
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
EGAP YPDSGR WDIVDKYKV+IFYTAPTLVRSLMRD ++YVTR+SRKSLRVLGSVGEPI
Sbjct: 427 EGAPNYPDSGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKYVTRHSRKSLRVLGSVGEPI 486
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581
NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD
Sbjct: 487 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 546
Query: 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------- 634
EKG+EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKPF GYYF+GDGC
Sbjct: 547 EKGIEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKPFAGYYFSGDGCRRDKDGYY 606
Query: 635 ------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP 682
SGHRIGTAEVESALV HPQCAEAAVVG+EHEVKGQGIYAFVTL+EGVP
Sbjct: 607 WLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIEHEVKGQGIYAFVTLLEGVP 666
Query: 683 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTS 742
YSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIMRRILRKIASRQL+ELGD S
Sbjct: 667 YSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIMRRILRKIASRQLEELGDIS 726
Query: 743 TLADPGVVDQLIALAD 758
TLADP VVDQLIALAD
Sbjct: 727 TLADPSVVDQLIALAD 742
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128712|ref|XP_002320403.1| predicted protein [Populus trichocarpa] gi|222861176|gb|EEE98718.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1226 bits (3171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/694 (84%), Positives = 628/694 (90%), Gaps = 29/694 (4%)
Query: 85 MKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQK 144
M T++ LRHV S+ PSGAGK S L+AVILGEAL+SEEND++ PSDDF+RQA V SPQ+
Sbjct: 1 MATDNKLRHVTSMLELPSGAGKFSALHAVILGEALASEENDLIFPSDDFARQAHVSSPQQ 60
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204
YLEMYKRSVEDPAGFW+DIAS+FYWK+KW Q CSEN D RKGN+ I+WFKGG+TNICYN
Sbjct: 61 YLEMYKRSVEDPAGFWSDIASQFYWKKKWDQPACSENFDFRKGNISIQWFKGGLTNICYN 120
Query: 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL 264
CLDRNIE+G DK+AIYWE NDPG++ +LTYSQLL +VCQL+NYLKD+GVKKGDAV+IYL
Sbjct: 121 CLDRNIESGNADKIAIYWEGNDPGLEDSLTYSQLLDRVCQLSNYLKDVGVKKGDAVVIYL 180
Query: 265 PMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 324
PMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVIT NAVKRG KAIHLK
Sbjct: 181 PMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITCNAVKRGAKAIHLK 240
Query: 325 DIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
DIVDAAL E AK+GISVDVCLTYEN++AM RE TKWQ+GRD+WWQD VPKYPT CEVEWV
Sbjct: 241 DIVDAALAESAKNGISVDVCLTYENENAMKREGTKWQEGRDVWWQDFVPKYPTTCEVEWV 300
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
DAEDPLFLLYTSGSTGKPKGVLHTTGGYMV++ATTFKYAFDYKPSDVYWCTADCGWITGH
Sbjct: 301 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYSATTFKYAFDYKPSDVYWCTADCGWITGH 360
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
SYVTYGPMLNGASVVVFEG PTYPD+GR WDIVDK+KVTIFYTAPTL +VT
Sbjct: 361 SYVTYGPMLNGASVVVFEGTPTYPDAGRCWDIVDKFKVTIFYTAPTL----------FVT 410
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK
Sbjct: 411 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 470
Query: 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
PGSATFPFFGVQPVIVDEKGVEIEGECSGYLC+KSSWPGAFRTLYGDHERYETTYFKPF
Sbjct: 471 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCLKSSWPGAFRTLYGDHERYETTYFKPFA 530
Query: 625 GYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHE 665
GYYFTGDGCS SGHRIGTAEVESALVSHP+CAEAAVVGVEHE
Sbjct: 531 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGVEHE 590
Query: 666 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 725
VKGQGIYAFVTLVEG PYSEELRKSL+L VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR
Sbjct: 591 VKGQGIYAFVTLVEGEPYSEELRKSLILTVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 650
Query: 726 ILRKIASRQLDELGDTSTLADPGVVDQLIALADC 759
ILRKIAS+QLDELGDTSTLA+P VV+QLI LADC
Sbjct: 651 ILRKIASKQLDELGDTSTLAEPHVVEQLIELADC 684
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560404|ref|XP_003548482.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1225 bits (3170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/696 (82%), Positives = 636/696 (91%), Gaps = 19/696 (2%)
Query: 82 SKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPS 141
+ ++T +FLRHVES+ PSGAG IS LNAVILGE+L++EE+D VLPS+DF+ QA V S
Sbjct: 56 ASNLRTNNFLRHVESMKLLPSGAGHISHLNAVILGESLATEEDDFVLPSEDFAGQANVQS 115
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
P++YL+MYKRS+EDPAGFW++IASEFYWK++WG +VC EN DVRKGN+KIEWFKGGITNI
Sbjct: 116 PEQYLKMYKRSIEDPAGFWSEIASEFYWKQRWGDKVCDENFDVRKGNIKIEWFKGGITNI 175
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
CYNCLDRN+EAGLGDKVA+YWE N+PG+D TLTY+QLLQQVCQLANYLKDIGVKKGDAVI
Sbjct: 176 CYNCLDRNVEAGLGDKVAVYWEGNEPGLDGTLTYTQLLQQVCQLANYLKDIGVKKGDAVI 235
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IYLPMLMELPIAMLACARIGAVHSVVFAGFS+++L+QRI+DCKPKVVIT NAVKRG K I
Sbjct: 236 IYLPMLMELPIAMLACARIGAVHSVVFAGFSAEALSQRIIDCKPKVVITCNAVKRGSKPI 295
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+LKDIVDAA+++ +++G+S+D CL YEN AM R +TKW++GRDIWWQDV+ +YPT C V
Sbjct: 296 YLKDIVDAAINDSSQNGVSIDKCLVYENPLAMKRVDTKWKEGRDIWWQDVIHQYPTTCPV 355
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKP D+YWCTADCGWI
Sbjct: 356 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPHDIYWCTADCGWI 415
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TGHSYVTYGPMLNGASV+V+EGAP YPD+GR WDIVDKYKVTIFYTAPTLVRSLMRDG+
Sbjct: 416 TGHSYVTYGPMLNGASVIVYEGAPNYPDAGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDT 475
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
+VTRYSRKSLRVLGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTETGGFMITPLPGAW
Sbjct: 476 FVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAW 535
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
PQKPGSAT PFFGVQPVIVDEKGVEIEGEC+GYLC+K SWPGAFRTLYGDHERYETTYFK
Sbjct: 536 PQKPGSATLPFFGVQPVIVDEKGVEIEGECNGYLCVKKSWPGAFRTLYGDHERYETTYFK 595
Query: 622 PFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGV 662
PF GYYF+GDGCS SGHRIGTAEVESALVSHPQCAEAAVVGV
Sbjct: 596 PFSGYYFSGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 655
Query: 663 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 722
EHEVKGQGIYAFVT+V+GVPYSEELRK LVL VRKQIGAFAAPDKIHWAPGLPKTRSGKI
Sbjct: 656 EHEVKGQGIYAFVTVVDGVPYSEELRKDLVLTVRKQIGAFAAPDKIHWAPGLPKTRSGKI 715
Query: 723 MRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
MRRILRKIASRQLDELGDTSTL+DP VV+QLI LAD
Sbjct: 716 MRRILRKIASRQLDELGDTSTLSDPNVVNQLIELAD 751
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145323645|ref|NP_001031974.2| acetyl-CoA synthetase [Arabidopsis thaliana] gi|378548265|sp|B9DGD6.1|ACS_ARATH RecName: Full=Acetate--CoA ligase ACS, chloroplastic/glyoxysomal; AltName: Full=Acetyl-CoA synthetase; Flags: Precursor gi|222423672|dbj|BAH19803.1| AT5G36880 [Arabidopsis thaliana] gi|332006738|gb|AED94121.1| acetyl-CoA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/695 (83%), Positives = 634/695 (91%), Gaps = 20/695 (2%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663
F GYYF+GDGCS SGHRIGTAEVESALV HPQCAEAAVVG+E
Sbjct: 588 FAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIE 647
Query: 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723
HEVKGQGIYAFVTL+EGVPYSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIM
Sbjct: 648 HEVKGQGIYAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIM 707
Query: 724 RRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
RRILRKIASRQL+ELGDTSTLADP VVDQLIALAD
Sbjct: 708 RRILRKIASRQLEELGDTSTLADPSVVDQLIALAD 742
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239431|ref|NP_198504.1| acetyl-CoA synthetase [Arabidopsis thaliana] gi|8953708|dbj|BAA98066.1| acetyl-CoA synthetase [Arabidopsis thaliana] gi|15028047|gb|AAK76554.1| putative acetyl-CoA synthetase [Arabidopsis thaliana] gi|26983904|gb|AAN86204.1| putative acetyl-CoA synthetase [Arabidopsis thaliana] gi|332006737|gb|AED94120.1| acetyl-CoA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/687 (83%), Positives = 629/687 (91%), Gaps = 19/687 (2%)
Query: 91 LRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYK 150
LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SPQ+Y+EM+K
Sbjct: 6 LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSPQQYMEMHK 65
Query: 151 RSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNI 210
RS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNICYNCLD+N+
Sbjct: 66 RSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNICYNCLDKNV 125
Query: 211 EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL 270
EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+IYLPMLMEL
Sbjct: 126 EAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVIYLPMLMEL 185
Query: 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAA 330
PIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+LK IVDAA
Sbjct: 186 PIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTINLKAIVDAA 245
Query: 331 LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390
LD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVEWVDAEDPL
Sbjct: 246 LDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVEWVDAEDPL 305
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYG 450
FLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWITGHSYVTYG
Sbjct: 306 FLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWITGHSYVTYG 365
Query: 451 PMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510
PMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++VTR+SRKS
Sbjct: 366 PMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKFVTRHSRKS 425
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF 570
LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF
Sbjct: 426 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF 485
Query: 571 PFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630
PFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKPF GYYF+G
Sbjct: 486 PFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKPFAGYYFSG 545
Query: 631 DGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGI 671
DGCS SGHRIGTAEVESALV HPQCAEAAVVG+EHEVKGQGI
Sbjct: 546 DGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIEHEVKGQGI 605
Query: 672 YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731
YAFVTL+EGVPYSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIMRRILRKIA
Sbjct: 606 YAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIMRRILRKIA 665
Query: 732 SRQLDELGDTSTLADPGVVDQLIALAD 758
SRQL+ELGDTSTLADP VVDQLIALAD
Sbjct: 666 SRQLEELGDTSTLADPSVVDQLIALAD 692
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 759 | ||||||
| TAIR|locus:2149104 | 743 | ACS "acetyl-CoA synthetase" [A | 0.725 | 0.741 | 0.835 | 0.0 | |
| UNIPROTKB|Q5QPH3 | 714 | ACSS2 "Acetyl-coenzyme A synth | 0.384 | 0.408 | 0.657 | 6.1e-206 | |
| UNIPROTKB|Q9NR19 | 701 | ACSS2 "Acetyl-coenzyme A synth | 0.361 | 0.390 | 0.689 | 1.6e-205 | |
| MGI|MGI:1890410 | 701 | Acss2 "acyl-CoA synthetase sho | 0.361 | 0.390 | 0.686 | 1.8e-204 | |
| RGD|1305489 | 701 | Acss2 "acyl-CoA synthetase sho | 0.361 | 0.390 | 0.682 | 1.6e-203 | |
| UNIPROTKB|A7YWF1 | 701 | ACSS2 "Uncharacterized protein | 0.361 | 0.390 | 0.693 | 4.3e-203 | |
| UNIPROTKB|E2R0C6 | 714 | ACSS2 "Uncharacterized protein | 0.361 | 0.383 | 0.686 | 1.9e-202 | |
| UNIPROTKB|J9P7N4 | 701 | ACSS2 "Uncharacterized protein | 0.361 | 0.390 | 0.686 | 1.9e-202 | |
| UNIPROTKB|F1S4Y0 | 701 | ACSS2 "Uncharacterized protein | 0.361 | 0.390 | 0.675 | 3.9e-200 | |
| ZFIN|ZDB-GENE-040718-388 | 698 | acss2 "acyl-CoA synthetase sho | 0.412 | 0.448 | 0.578 | 2.1e-199 |
| TAIR|locus:2149104 ACS "acetyl-CoA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2591 (917.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 461/552 (83%), Positives = 514/552 (93%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCS 634
F GYYF+GDGCS
Sbjct: 588 FAGYYFSGDGCS 599
|
|
| UNIPROTKB|Q5QPH3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 6.1e-206, Sum P(3) = 6.1e-206
Identities = 192/292 (65%), Positives = 226/292 (77%)
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
DV + +S + W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGK
Sbjct: 276 DVQGKLKEKSKRVQPQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGK 335
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
PKGV+HT GGYM++ ATTFKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+F
Sbjct: 336 PKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLF 395
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
EG PTYPD R W IVDKYKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPI
Sbjct: 396 EGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPI 455
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581
NP AW W+ VVG RCPI DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++
Sbjct: 456 NPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILN 515
Query: 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
E G E+EGE GYL K WPG RT+YG+HER+ETTYFK FPGYY TGDGC
Sbjct: 516 ESGEELEGEAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGC 567
|
|
| UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 1.6e-205, Sum P(3) = 1.6e-205
Identities = 189/274 (68%), Positives = 220/274 (80%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W IVDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVNRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
WPG RT+YG+HER+ETTYFK FPGYY TGDGC
Sbjct: 521 PWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGC 554
|
|
| MGI|MGI:1890410 Acss2 "acyl-CoA synthetase short-chain family member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1112 (396.5 bits), Expect = 1.8e-204, Sum P(3) = 1.8e-204
Identities = 188/274 (68%), Positives = 222/274 (81%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQQAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTIGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD GR W IVDK
Sbjct: 341 FKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDEGRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGSQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
WPG RT+YG+H R+ETTYFK FPGYY TGDGC
Sbjct: 521 PWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGC 554
|
|
| RGD|1305489 Acss2 "acyl-CoA synthetase short-chain family member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 1.6e-203, Sum P(3) = 1.6e-203
Identities = 187/274 (68%), Positives = 221/274 (80%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ + + E EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQQAGDEFEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD GR W IVDK
Sbjct: 341 FKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDEGRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGSQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
WPG RT+YG+H R+ETTYFK FPGYY TGDGC
Sbjct: 521 PWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGC 554
|
|
| UNIPROTKB|A7YWF1 ACSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 4.3e-203, Sum P(3) = 4.3e-203
Identities = 190/274 (69%), Positives = 222/274 (81%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ K +CE EW DAEDPLF+LYTSGSTGKPKGVLHT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQKAGDECEPEWCDAEDPLFILYTSGSTGKPKGVLHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IV+K
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVEK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGAIPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
WPG RT+YG+HER+ETTYFK FPGYY TGDGC
Sbjct: 521 PWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGC 554
|
|
| UNIPROTKB|E2R0C6 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 1.9e-202, Sum P(3) = 1.9e-202
Identities = 188/274 (68%), Positives = 219/274 (79%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 294 WNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 353
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IVDK
Sbjct: 354 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVDK 413
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VTR+SR SL+VLG+VGEPINP AW W+ VVG RC
Sbjct: 414 YKVTKFYTAPTAIRLLMKFGDEPVTRHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCS 473
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 474 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 533
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
WPG RT+YG+HER+E TYFK FPGYY TGDGC
Sbjct: 534 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGC 567
|
|
| UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 1.9e-202, Sum P(3) = 1.9e-202
Identities = 188/274 (68%), Positives = 219/274 (79%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IVDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VTR+SR SL+VLG+VGEPINP AW W+ VVG RC
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTRHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCS 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
WPG RT+YG+HER+E TYFK FPGYY TGDGC
Sbjct: 521 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGC 554
|
|
| UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 3.9e-200, Sum P(3) = 3.9e-200
Identities = 185/274 (67%), Positives = 218/274 (79%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D WW +++ +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNNGVDFWWHELMQDAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PT+PD R W +VDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTHPDVSRLWSVVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+ VT++SR SL+VLG+VGEPINP AW W+ VVGD+RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKSGDGPVTKHSRASLKVLGTVGEPINPEAWLWYHRVVGDNRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATRTKPGSATFPFFGVAPAILNEAGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
WPG RT+YG+HER+E TYFK FPGYY TGDGC
Sbjct: 521 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGC 554
|
|
| ZFIN|ZDB-GENE-040718-388 acss2 "acyl-CoA synthetase short-chain family member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1042 (371.9 bits), Expect = 2.1e-199, Sum P(3) = 2.1e-199
Identities = 188/325 (57%), Positives = 229/325 (70%)
Query: 319 KAIHLKDIVDAALDECAKSGISVDV---C--LTYENQSAMTRE-----NTKWQDGRDIWW 368
K I LK + DE + +S C L E Q R+ W D+ W
Sbjct: 229 KCIMLKHLTKE--DEASSGSLSPPAKRACPDLQQEKQKERVRKVRPPPQVPWNPEVDMCW 286
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
++ +CE W D+EDPLF+LYTSGSTGKPKGVLHT GYM++TA+TFK FDY
Sbjct: 287 HSLIGGASEECEPVWCDSEDPLFILYTSGSTGKPKGVLHTVSGYMLYTASTFKMVFDYHS 346
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
DVYWCTAD GWITGHSY+TYGP+ NGA+ V+FEG PTYPD R W+IVDKY V+ FYTA
Sbjct: 347 DDVYWCTADIGWITGHSYITYGPLANGATSVLFEGLPTYPDVSRMWEIVDKYHVSKFYTA 406
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R LM+ G++ V +Y R SL++LG+VGEPINP AW+W++NVVG+ RCP+ DT+WQTE
Sbjct: 407 PTAIRLLMKYGSDPVHKYKRTSLKILGTVGEPINPEAWQWYYNVVGEKRCPVVDTFWQTE 466
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGG ++TPLP A P KPGSATFPFFGV P I++E G E+EG GYL K WPG RT+
Sbjct: 467 TGGHVMTPLPAATPMKPGSATFPFFGVVPAILNESGEELEGPSEGYLVFKQPWPGVMRTV 526
Query: 609 YGDHERYETTYFKPFPGYYFTGDGC 633
YG+H R+ETTYFK FPGYY TGDGC
Sbjct: 527 YGNHLRFETTYFKKFPGYYVTGDGC 551
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8YJ48 | ACSA_BRUME | 6, ., 2, ., 1, ., 1 | 0.5526 | 0.8194 | 0.9554 | yes | no |
| B7KPN8 | ACSA_METC4 | 6, ., 2, ., 1, ., 1 | 0.5394 | 0.8142 | 0.9478 | yes | no |
| Q4UP35 | ACSA_XANC8 | 6, ., 2, ., 1, ., 1 | 0.5458 | 0.7931 | 0.9304 | yes | no |
| Q6MNF1 | ACSA_BDEBA | 6, ., 2, ., 1, ., 1 | 0.5546 | 0.7878 | 0.9271 | yes | no |
| Q8PF09 | ACSA_XANAC | 6, ., 2, ., 1, ., 1 | 0.5497 | 0.7918 | 0.9289 | yes | no |
| A1UR36 | ACSA_BARBK | 6, ., 2, ., 1, ., 1 | 0.5303 | 0.8089 | 0.9417 | yes | no |
| A0KNI2 | ACSA_AERHH | 6, ., 2, ., 1, ., 1 | 0.5580 | 0.7891 | 0.9243 | yes | no |
| Q056J9 | ACSA_LEPBL | 6, ., 2, ., 1, ., 1 | 0.5582 | 0.8142 | 0.9449 | yes | no |
| Q2NXE2 | ACSA_XANOM | 6, ., 2, ., 1, ., 1 | 0.5560 | 0.7918 | 0.9289 | yes | no |
| Q07VK4 | ACSA_RHOP5 | 6, ., 2, ., 1, ., 1 | 0.5638 | 0.8036 | 0.9413 | yes | no |
| Q57B76 | ACSA_BRUAB | 6, ., 2, ., 1, ., 1 | 0.5541 | 0.8194 | 0.9554 | yes | no |
| B0SRX5 | ACSA_LEPBP | 6, ., 2, ., 1, ., 1 | 0.5444 | 0.8142 | 0.9449 | yes | no |
| A7HSR8 | ACSA_PARL1 | 6, ., 2, ., 1, ., 1 | 0.5591 | 0.8036 | 0.9428 | yes | no |
| C0RF62 | ACSA_BRUMB | 6, ., 2, ., 1, ., 1 | 0.5511 | 0.8194 | 0.9554 | yes | no |
| A4YK73 | ACSA_BRASO | 6, ., 2, ., 1, ., 1 | 0.5560 | 0.8036 | 0.9384 | yes | no |
| A9IYZ3 | ACSA_BART1 | 6, ., 2, ., 1, ., 1 | 0.5441 | 0.8115 | 0.9520 | yes | no |
| B9DGD6 | ACS_ARATH | 6, ., 2, ., 1, ., 1 | 0.8302 | 0.8893 | 0.9084 | yes | no |
| Q8P3L1 | ACSA_XANCP | 6, ., 2, ., 1, ., 1 | 0.5458 | 0.7931 | 0.9304 | yes | no |
| Q9QXG4 | ACSA_MOUSE | 6, ., 2, ., 1, ., 1 | 0.5639 | 0.8247 | 0.8930 | yes | no |
| B8FIN2 | ACSA_DESAA | 6, ., 2, ., 1, ., 1 | 0.5384 | 0.8129 | 0.9551 | yes | no |
| Q9VP61 | ACSA_DROME | 6, ., 2, ., 1, ., 1 | 0.5295 | 0.8326 | 0.9432 | yes | no |
| A9W5V0 | ACSA_METEP | 6, ., 2, ., 1, ., 1 | 0.5409 | 0.8142 | 0.9522 | yes | no |
| A7IFD4 | ACSA_XANP2 | 6, ., 2, ., 1, ., 1 | 0.5612 | 0.7891 | 0.9201 | yes | no |
| A4SJM6 | ACSA_AERS4 | 6, ., 2, ., 1, ., 1 | 0.5468 | 0.7891 | 0.9243 | yes | no |
| A1U2S9 | ACSA_MARAV | 6, ., 2, ., 1, ., 1 | 0.5471 | 0.8089 | 0.9460 | yes | no |
| A0LG91 | ACSA_SYNFM | 6, ., 2, ., 1, ., 1 | 0.5705 | 0.7891 | 0.9215 | yes | no |
| Q8FYQ3 | ACSA_BRUSU | 6, ., 2, ., 1, ., 1 | 0.5541 | 0.8194 | 0.9554 | yes | no |
| A0L576 | ACSA_MAGSM | 6, ., 2, ., 1, ., 1 | 0.5516 | 0.8076 | 0.9518 | yes | no |
| Q72LY9 | ACSA_LEPIC | 6, ., 2, ., 1, ., 1 | 0.5537 | 0.8234 | 0.9455 | yes | no |
| A9WWT6 | ACSA_BRUSI | 6, ., 2, ., 1, ., 1 | 0.5526 | 0.8194 | 0.9554 | yes | no |
| B8EPJ0 | ACSA_METSB | 6, ., 2, ., 1, ., 1 | 0.5407 | 0.8155 | 0.9596 | yes | no |
| Q89WV5 | ACSA_BRAJA | 6, ., 2, ., 1, ., 1 | 0.5619 | 0.7891 | 0.9243 | yes | no |
| A1WY97 | ACSA_HALHL | 6, ., 2, ., 1, ., 1 | 0.5506 | 0.7878 | 0.9271 | yes | no |
| A1SZA2 | ACSA_PSYIN | 6, ., 2, ., 1, ., 1 | 0.5389 | 0.8129 | 0.9506 | yes | no |
| Q2YLH5 | ACSA_BRUA2 | 6, ., 2, ., 1, ., 1 | 0.5541 | 0.8194 | 0.9554 | yes | no |
| B0S8X7 | ACSA_LEPBA | 6, ., 2, ., 1, ., 1 | 0.5444 | 0.8142 | 0.9449 | yes | no |
| Q04P35 | ACSA_LEPBJ | 6, ., 2, ., 1, ., 1 | 0.5582 | 0.8142 | 0.9449 | yes | no |
| Q0AAW0 | ACSA_ALHEH | 6, ., 2, ., 1, ., 1 | 0.5493 | 0.8089 | 0.9519 | yes | no |
| A6WXV8 | ACSA_OCHA4 | 6, ., 2, ., 1, ., 1 | 0.5657 | 0.7918 | 0.9231 | yes | no |
| A9M849 | ACSA_BRUC2 | 6, ., 2, ., 1, ., 1 | 0.5541 | 0.8194 | 0.9554 | yes | no |
| B1ZB59 | ACSA_METPB | 6, ., 2, ., 1, ., 1 | 0.5455 | 0.8142 | 0.9522 | yes | no |
| Q6FYL4 | ACSA_BARQU | 6, ., 2, ., 1, ., 1 | 0.5458 | 0.8089 | 0.9417 | yes | no |
| Q98ET8 | ACSA_RHILO | 6, ., 2, ., 1, ., 1 | 0.5467 | 0.8076 | 0.9416 | yes | no |
| Q9HV66 | ACSA2_PSEAE | 6, ., 2, ., 1, ., 1 | 0.5632 | 0.8089 | 0.9519 | yes | no |
| Q6G1W0 | ACSA_BARHE | 6, ., 2, ., 1, ., 1 | 0.5419 | 0.8102 | 0.9432 | yes | no |
| B2S7N5 | ACSA_BRUA1 | 6, ., 2, ., 1, ., 1 | 0.5541 | 0.8194 | 0.9554 | yes | no |
| A5VSF3 | ACSA_BRUO2 | 6, ., 2, ., 1, ., 1 | 0.5541 | 0.8194 | 0.9554 | yes | no |
| Q9NR19 | ACSA_HUMAN | 6, ., 2, ., 1, ., 1 | 0.5729 | 0.8247 | 0.8930 | yes | no |
| Q8EYG2 | ACSA_LEPIN | 6, ., 2, ., 1, ., 1 | 0.5521 | 0.8234 | 0.9455 | yes | no |
| Q21LV0 | ACSA_SACD2 | 6, ., 2, ., 1, ., 1 | 0.5696 | 0.7878 | 0.9271 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.921 |
| 4th Layer | 6.2.1.1 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 759 | |||
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 0.0 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 0.0 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.0 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.0 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 0.0 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 0.0 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 0.0 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-158 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-148 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-142 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-112 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 1e-110 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-90 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 9e-88 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 3e-77 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-76 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 4e-74 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 6e-74 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-72 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 8e-61 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 1e-59 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-56 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 3e-56 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-52 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 6e-52 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-46 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 1e-46 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-46 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 6e-43 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 7e-42 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 4e-41 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-40 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 4e-39 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 6e-39 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 4e-37 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-37 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 5e-33 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 2e-32 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-32 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-32 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 5e-32 | |
| pfam11930 | 82 | pfam11930, DUF3448, Domain of unknown function (DU | 2e-31 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-31 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-30 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 4e-30 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 6e-30 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 3e-29 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 6e-29 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-28 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-28 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-28 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 7e-28 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-27 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 7e-27 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 8e-27 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-26 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 3e-26 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-26 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 1e-25 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 9e-24 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-22 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-22 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 5e-22 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 5e-22 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-22 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 7e-22 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 9e-22 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 9e-22 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-21 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-21 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 3e-20 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 4e-20 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 9e-20 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-19 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-19 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 2e-19 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 3e-19 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-19 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-18 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 4e-18 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-18 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-18 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-18 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 8e-18 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 9e-18 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 1e-17 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-17 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 5e-17 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 1e-16 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-16 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-16 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-16 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 2e-16 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 3e-16 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 3e-15 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-15 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 6e-15 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 7e-15 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-14 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 1e-14 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-14 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 2e-14 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 6e-14 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 8e-14 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 9e-14 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-13 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 5e-13 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 5e-13 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 8e-13 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-12 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-12 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 2e-12 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-12 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 4e-12 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-12 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 6e-12 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-11 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-11 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 4e-11 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 4e-11 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-11 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 7e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-10 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-10 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 2e-10 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-10 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-10 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 6e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-09 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-09 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-09 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 2e-09 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-09 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-09 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 7e-09 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 7e-09 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-08 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-08 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 1e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-08 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 3e-08 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-08 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 4e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 5e-08 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 5e-08 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 6e-08 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 6e-08 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 7e-08 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 7e-08 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 7e-08 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-07 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-07 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-07 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-07 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-07 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-07 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-07 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 5e-07 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 6e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-06 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-06 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-06 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-06 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-06 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 3e-06 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 4e-06 | |
| PRK09188 | 365 | PRK09188, PRK09188, serine/threonine protein kinas | 6e-06 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 7e-06 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 9e-06 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-05 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-05 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-05 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 4e-05 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 5e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 5e-05 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 5e-05 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 9e-05 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 1e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 2e-04 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-04 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 4e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 4e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-04 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 0.001 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 0.002 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 0.002 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.003 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.003 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 0.003 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.004 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 1373 bits (3556), Expect = 0.0
Identities = 579/666 (86%), Positives = 618/666 (92%), Gaps = 20/666 (3%)
Query: 114 ILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKW 173
+LGE+L+SEEND+V PS DFS QALV SPQ+Y+EMYKRSV+DPAGFW+DIAS+FYWK+KW
Sbjct: 1 VLGESLASEENDLVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKW 60
Query: 174 -GQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDAT 232
G VCSENLDVRKG + IEWFKGG TNICYNCLDRN+EAG GDK+AIYWE N+PG DA+
Sbjct: 61 EGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDAS 120
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTYS+LL +VCQLANYLKD+GVKKGDAV+IYLPMLMELPIAMLACARIGAVHSVVFAGFS
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
++SLAQRI+DCKPKVVIT NAVKRGPK I+LKDIVDAALDE AK+G+SV +CLTYENQ A
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA 240
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
M RE+TKWQ+GRD+WWQDVVP YPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY
Sbjct: 241 MKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 300
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
MV+TATTFKYAFDYKP+DVYWCTADCGWITGHSYVTYGPMLNGA+V+VFEGAP YPDSGR
Sbjct: 301 MVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGR 360
Query: 473 SWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532
WDIVDKYKVTIFYTAPTLVRSLMRDG+EYVTR+SRKSLRVLGSVGEPINPSAWRWFFNV
Sbjct: 361 CWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNV 420
Query: 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG EIEGECS
Sbjct: 421 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS 480
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------ 634
GYLC+K SWPGAFRTLYGDHERYETTYFKPF GYYF+GDGCS
Sbjct: 481 GYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVIN 540
Query: 635 -SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
SGHRIGTAEVESALVSHPQCAEAAVVG+EHEVKGQGIYAFVTLVEGVPYSEELRKSL+L
Sbjct: 541 VSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLIL 600
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 753
VR QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL
Sbjct: 601 TVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 660
Query: 754 IALADC 759
IALAD
Sbjct: 661 IALADS 666
|
Length = 666 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 1085 bits (2809), Expect = 0.0
Identities = 367/646 (56%), Positives = 450/646 (69%), Gaps = 37/646 (5%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P +F+ AL+ ++Y +Y+ SVEDP GFWA+ A W + + LD
Sbjct: 4 PPAEFAANALI-DMEQYKALYQESVEDPEGFWAEQAKRLDWFKPF-----DTVLD--WNA 55
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
I+WF+ G N+ YNCLDR+++ GDKVAI WE +DPG +TY +L ++VC+ AN
Sbjct: 56 PFIKWFEDGELNVSYNCLDRHLKTR-GDKVAIIWEGDDPGDSRKITYRELHREVCRFANA 114
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
LK +GVKKGD V IY+PM+ E +AMLACARIGAVHSVVF GFS+++LA RI+D K+V
Sbjct: 115 LKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLV 174
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT++ RG K I LK VD AL C SV+ + T + W +GRD+WW
Sbjct: 175 ITADEGVRGGKPIPLKANVDEALANCP----SVEKVIVVRR----TGGDVDWVEGRDLWW 226
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
++V +CE E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ A T KY FDYK
Sbjct: 227 HELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKD 286
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
DVYWCTAD GW+TGHSY+ YGP+ NGA+ ++FEG P YPD GR W+++DK+KVTIFYTA
Sbjct: 287 GDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTA 346
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R+LM++G+E+ +Y SLR+LGSVGEPINP AW W++ VVG RCPI DTWWQTE
Sbjct: 347 PTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTE 406
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGG MITPLPGA P KPGSAT P G+QP +VDE+G +EG G L IK WPG RT+
Sbjct: 407 TGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTI 466
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649
YGDHER+ TYF F G YFTGDG SGHR+GTAE+ESALV
Sbjct: 467 YGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 526
Query: 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 709
+HP+ AEAAVVG ++KGQGIYAFVTL G S+ELRK L VRK+IG A PD I
Sbjct: 527 AHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQ 586
Query: 710 WAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755
+APGLPKTRSGKIMRRILRKIA + LGDTSTLADP VV++LI
Sbjct: 587 FAPGLPKTRSGKIMRRILRKIAEGEE-ILGDTSTLADPSVVEKLIE 631
|
Length = 637 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 1083 bits (2804), Expect = 0.0
Identities = 373/617 (60%), Positives = 443/617 (71%), Gaps = 34/617 (5%)
Query: 149 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 208
YK S+EDP FWA+ A E W + W + LD +WF GG N YNCLDR
Sbjct: 1 YKESIEDPEEFWAEQAEELDWFKPW-----DKVLD-WSNPPFAKWFVGGKLNASYNCLDR 54
Query: 209 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 268
+++AG G+KVAI WE T+TY +L ++VC+ AN LK +GVKKGD V IY+PM+
Sbjct: 55 HLKAGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIP 114
Query: 269 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 328
ELPIAMLACARIGA+HSVVFAGFS+++LA RI D K K++IT++ RG K I LK+IVD
Sbjct: 115 ELPIAMLACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVD 174
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388
AL++C SV+ + + T +GRD+WW D++ K CE E +DAED
Sbjct: 175 EALEKCP----SVEKVIVVKR----TGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAED 226
Query: 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448
PLF+LYTSGSTGKPKGV+HTTGGY+V+ ATTFKY FD P DVYWCTAD GWITGHSY+
Sbjct: 227 PLFILYTSGSTGKPKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIV 286
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
YGP+ NGA+ V++EGAP YPD GR W+IV+KYKVTIFYTAPT +R LMR G+E+ ++
Sbjct: 287 YGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDL 346
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568
SLR+LGSVGEPINP AW W++ V+G RCPI DTWWQTETGG MITPLPGA P KPGSA
Sbjct: 347 SSLRLLGSVGEPINPEAWMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGATPLKPGSA 406
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 628
T PF GV+P IVDE+G E+EG GYL IK WPG RT+YGDHERY TYF FPGYYF
Sbjct: 407 TRPFPGVEPAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYF 466
Query: 629 TGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669
TGDG SGHR+GTAEVESALVSHP AEAAVVG EVKG+
Sbjct: 467 TGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGE 526
Query: 670 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
IYAFVTL +GV S+ELRK L VRK+IG A PD+I + PGLPKTRSGKIMRRILRK
Sbjct: 527 AIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRILRK 586
Query: 730 IASRQLDELGDTSTLAD 746
IA+ + +ELGDTSTL D
Sbjct: 587 IAAGE-EELGDTSTLED 602
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 1008 bits (2608), Expect = 0.0
Identities = 365/636 (57%), Positives = 453/636 (71%), Gaps = 35/636 (5%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGIT 199
+ ++Y E+Y+ S+EDP FWA +A E W + + +V + +WF GG
Sbjct: 3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPF-TKVLDWSFPP-----FYKWFVGGEL 56
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N+ YNC+DR++EA DKVAI WE ++PG +TY +L ++VC+ AN LK +GVKKGD
Sbjct: 57 NVSYNCVDRHLEA-RPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPK 319
V IY+PM+ E IAMLACARIGA+HSVVF GFS+++LA RI D K+VIT++ RG K
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 320 AIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
I LK IVD AL++C +SV+ L T W +GRD+WW D++ K C
Sbjct: 176 VIPLKAIVDEALEKC---PVSVEHVLVVRR----TGNPVPWVEGRDVWWHDLMAKASAYC 228
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
E E +D+EDPLF+LYTSGSTGKPKGVLHTTGGY+++ A T KY FD K D++WCTAD G
Sbjct: 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
WITGHSY+ YGP+ NGA+ V+FEG PTYPD GR W+I++K+KVTIFYTAPT +R+LMR G
Sbjct: 289 WITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLG 348
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
+E+V ++ SLR+LGSVGEPINP AW W++ VVG RCPI DTWWQTETGG MITPLPG
Sbjct: 349 DEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG 408
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEG-ECSGYLCIKSSWPGAFRTLYGDHERYETT 618
A P KPGSAT PFFG++P +VDE+G +EG GYL IK WPG RT+YGDHER+ T
Sbjct: 409 ATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDT 468
Query: 619 YFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659
YF PFPGYYFTGDG SGHR+GTAE+ESALVSHP AEAAV
Sbjct: 469 YFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAV 528
Query: 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719
VG+ ++KGQ IYAFVTL +G +ELRK L VRK+IG A PDKI + PGLPKTRS
Sbjct: 529 VGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRS 588
Query: 720 GKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755
GKIMRR+LRKIA+ + + LGDTSTL DP VV++LI
Sbjct: 589 GKIMRRLLRKIAAGEEEILGDTSTLEDPSVVEELIE 624
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 673 bits (1738), Expect = 0.0
Identities = 231/571 (40%), Positives = 308/571 (53%), Gaps = 62/571 (10%)
Query: 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD 251
+WF+GG N+ N LDR++EA D AI ++ + G+ LTY L ++V +LAN LKD
Sbjct: 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFD-GEDGLFRELTYGDLRREVARLANALKD 59
Query: 252 IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
+G KGD V IY+P E IA+LA ARIGA+ +VV G S++++A RI D PKV+I
Sbjct: 60 LGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD 119
Query: 312 NAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371
+ R K I L + DA L +W+ +
Sbjct: 120 DGTFRNGKEIALLEDADAVLSSVVVV------------------------PRLGLWYDEA 155
Query: 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
V K K E E + A+DPLFLLYTSG+TGKPKG++H+ GGY+V T K+ D P D
Sbjct: 156 VEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDR 215
Query: 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
+W ++D GWI G Y + P+ +GA+ V+++G P Y R W+ ++KYKVTIF T+PT
Sbjct: 216 FWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTF 274
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+R LM+ G Y SLRVLGS GEP+NP A+ WF++ +G I D + QTETG
Sbjct: 275 LRRLMKLGL--GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGM 329
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
I P P K GS+ P G VD++G + G L ++ WPG T + D
Sbjct: 330 GFIAGRP---PVKNGSSGLPLPGYAVRRVDDEGNPVPPG-VGELVVRLPWPGMALTYWND 385
Query: 612 HERYETTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHP 652
ERY+ YF +Y TGD SG RIG E+ES L++HP
Sbjct: 386 PERYKEAYFG---RWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHP 442
Query: 653 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 712
AEAAVVGV KGQ + AFV L GV + EL + + V + IG A P KI +
Sbjct: 443 AVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVD 501
Query: 713 GLPKTRSGKIMRRILRKIASRQLDELGDTST 743
LPKT SGKI RR+LRKI + D ST
Sbjct: 502 ELPKTASGKIQRRLLRKIL----HKGEDLST 528
|
Length = 528 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 588 bits (1519), Expect = 0.0
Identities = 243/626 (38%), Positives = 348/626 (55%), Gaps = 45/626 (7%)
Query: 154 EDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAG 213
++P FWA+ A+ W + W + + + N + WF GG N+CYN +DR+IE G
Sbjct: 1 KEPEAFWAEQANLIDWYKPWEKVLDNSNPPFTR------WFVGGRLNLCYNAVDRHIEDG 54
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
GD++A+ +++ G T TY++L +V +LA L+ +GV KGD VIIY+PM+ E IA
Sbjct: 55 RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
MLACARIGA+HSVVF GF+S LA RI D KPK+++T++ + + K ++D AL
Sbjct: 115 MLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKAL-- 172
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
S L + GRD+ W +++ K + V++ DPL++L
Sbjct: 173 -ELSQHKPHKVLILNRGQVPAPL----KPGRDLDWAELMAKAR-PVDCVPVESTDPLYIL 226
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
YTSG+TGKPKGV+ TGGY V + + + KP DV+W +D GW+ GHSY+ YGP+L
Sbjct: 227 YTSGTTGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLL 286
Query: 454 NGASVVVFEGAPTY-PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD--GNEYVTRYSRKS 510
+GA+ V++EG P PD+G W ++++Y V +TAPT +R++ + EY+ +Y S
Sbjct: 287 HGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSS 346
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG--AWPQKPGSA 568
LR L GE ++ W +G P+ D WWQTETG + G P KPGS
Sbjct: 347 LRALFLAGERLDSPTLEWIEKTLG---VPVIDHWWQTETGWPITANCVGLELLPIKPGSP 403
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETTYFKPFPGYY 627
P G ++DE G E+ G + IK PG TL+GD ER++ Y FPGYY
Sbjct: 404 GKPVPGYDVQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYY 463
Query: 628 FTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 668
TGD +GHR+ T E+E +++ HP AE AVVGV E+KG
Sbjct: 464 DTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKG 523
Query: 669 QGIYAFVTLVEGVPYSEE-LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
Q V L + + L +V VR+QIG AA + + LPKTRSGKI+RR L
Sbjct: 524 QVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTL 583
Query: 728 RKIASRQLDELGDTSTLADPGVVDQL 753
RKIA ++ D ST+ DP V+D++
Sbjct: 584 RKIA--DGEDYKDPSTIEDPSVLDEI 607
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 532 bits (1373), Expect = 0.0
Identities = 229/642 (35%), Positives = 353/642 (54%), Gaps = 51/642 (7%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCS-ENLDVRKGNVKIEWFKGGITNI 201
Y E Y+RS++DP FWA+ A W+ + +V N + WF GG TN+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRIDWQTPF-TQVLDYSNPPFAR------WFVGGRTNL 54
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
C+N +DR++ +++A+ + + + T T+ QL +V ++A L+ +GV++GD V+
Sbjct: 55 CHNAVDRHLAKR-PEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVL 113
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IY+PM+ E AMLACARIGA+HSVVF GF+S SLA RI D KP ++++++A RG K +
Sbjct: 114 IYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVV 173
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTKCE 380
K ++D A+ V L + A GRD+ + + ++ +
Sbjct: 174 PYKPLLDEAIALAQHKPRHV---LLVDRGLAPMA----RVAGRDVDYATLRAQHLGARVP 226
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
VEW+++ +P ++LYTSG+TGKPKGV TGGY V AT+ F K + ++C +D GW
Sbjct: 227 VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGW 286
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+ GHSY+ Y P+L G + +++EG PT PD+G W IV+KYKV ++APT +R L +
Sbjct: 287 VVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDP 346
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG- 559
+ ++ SLR L GEP++ W +G P+ D +WQTETG ++ G
Sbjct: 347 ALLRKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVIDNYWQTETGWPILAIARGV 403
Query: 560 -AWPQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYE 616
P + GS P +G +++E G G L I+ PG +T++GD +R+
Sbjct: 404 EDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFV 463
Query: 617 TTYFKPFP---------------GYYF----TGDGCS-SGHRIGTAEVESALVSHPQCAE 656
TY+ F GYYF T D + +GHR+GT E+E ++ SHP AE
Sbjct: 464 KTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAE 523
Query: 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEE-----LRKSLVLAVRKQIGAFAAPDKIHWA 711
AVVGV+ +KGQ AFV + ++ L K ++ V Q+GA A P ++ +
Sbjct: 524 VAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFV 583
Query: 712 PGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 753
LPKTRSGK++RR ++ IA + + GD +T+ DP + Q+
Sbjct: 584 SALPKTRSGKLLRRAIQAIAEGR--DPGDLTTIEDPAALQQI 623
|
Length = 629 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 470 bits (1212), Expect = e-158
Identities = 225/589 (38%), Positives = 310/589 (52%), Gaps = 72/589 (12%)
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
+V K + W + G NI Y +DR+ + G DKVA+ + D TY +L +
Sbjct: 29 EVEK---EFSWLETGKVNIAYEAIDRHADGGRKDKVALRYL--DASRKEKYTYKELKELS 83
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
+ AN LK++GV+KGD V I++P + EL A+L + GA+ +F F +++ R+ D
Sbjct: 84 NKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLED 143
Query: 303 CKPKVVITSNAV-KRGPKA--IHLKDI--VDAALDECAKSGISVDVCLTYENQSAMTREN 357
+ KV+IT+ A+ +R P LK + V ++E T + + M +
Sbjct: 144 SEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPG---------TLDFNALMEQA- 193
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+ ++EW D ED L YTSGSTGKPKGVLH + H
Sbjct: 194 ------------------SDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ 235
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
T KY D DVYWCTAD GW+TG SY + P LNGA+ V+ G R + I+
Sbjct: 236 TG-KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRF---SPERWYRIL 291
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ YKVT++YTAPT +R LM G++ V +Y SLR + SVGEP+NP RW V G
Sbjct: 292 EDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG--- 348
Query: 538 CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCI 597
PI D WW TETGG MI P A KPGS P G++ IVD++G E+ G L I
Sbjct: 349 LPIHDNWWMTETGGIMIANYP-AMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAI 407
Query: 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC-------------------SSGHR 638
K WP R ++ + E+YE+ YF +Y +GD +SG R
Sbjct: 408 KKGWPSMMRGIWNNPEKYES-YFAG--DWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGER 464
Query: 639 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 698
+G EVES L+ HP AEA V+G V+G+ I AFV L G SEEL++ + V+K
Sbjct: 465 VGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKG 524
Query: 699 IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLD-ELGDTSTLAD 746
+GA AAP +I + LPKTRSGKIMRR+L+ + +L GD ST+ D
Sbjct: 525 LGAHAAPREIEFKDKLPKTRSGKIMRRVLK---AWELGLPEGDLSTMED 570
|
Length = 570 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 448 bits (1153), Expect = e-148
Identities = 230/640 (35%), Positives = 352/640 (55%), Gaps = 49/640 (7%)
Query: 144 KYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203
+Y E Y+RS+E P FWA+ A W+ + + N + WF GG TN+C+
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPPQRILDYSNPPFAR------WFAGGRTNLCH 55
Query: 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIY 263
N LDR+++ G+++A+ +++ G + TLTY QL ++V A+ L+ +GV +GD V+IY
Sbjct: 56 NALDRHLDER-GEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY 114
Query: 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+PM+ E AMLACARIGA+HSVVF GF+S SLA RI D PK++++++A RG K I
Sbjct: 115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPY 174
Query: 324 KDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVE 382
K ++DAA+ E V L + M GRD+ + + ++ + VE
Sbjct: 175 KPLLDAAIAEAQHP--PPHVLLVDRGLAPMRL-----IPGRDVDYAALRTQHEDAQVPVE 227
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
W+++ +P ++LYTSG+TGKPKGV GGY V A + F + V + +D GW+
Sbjct: 228 WLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVV 287
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSY+ Y P+L GA+ V++EG PT PD G W IV++Y V ++APT +R L + +
Sbjct: 288 GHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW 347
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ ++ SL L GEP++ W + +G P+ D +WQTETG ++ +PG
Sbjct: 348 LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGK---PVIDNYWQTETGWPVLAIMPGLDL 404
Query: 563 QKP--GSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETT 618
+ GS P +G ++DE G G L + PG T++GD R+ T
Sbjct: 405 KPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKT 464
Query: 619 YFKPFP---------------GYYF----TGDGCS-SGHRIGTAEVESALVSHPQCAEAA 658
Y+ F GY F T D + +GHR+GT E+E ++ SHP AE A
Sbjct: 465 YWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVA 524
Query: 659 VVGVEHEVKGQGIYAFVTLVEGVPYSE-----ELRKSLVLAVRKQIGAFAAPDKIHWAPG 713
VVGV E+KGQ F L E + + ++ V +Q+GA A P ++++
Sbjct: 525 VVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAA 584
Query: 714 LPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 753
LPKTRSGK++RR ++ +A + + GD +T+ DPG ++Q+
Sbjct: 585 LPKTRSGKLLRRSIQALAEGR--DPGDLTTIDDPGALEQV 622
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 425 bits (1094), Expect = e-142
Identities = 193/539 (35%), Positives = 264/539 (48%), Gaps = 86/539 (15%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
G T TYS+L ++V +LA+ L +G+ KGD V IY+PM+ E +A+LA A+IGA+ +
Sbjct: 3 GSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPI 62
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
F+GF DA + V +
Sbjct: 63 FSGFG----------------------------------PDAVATRLQDAEAKVLIT--- 85
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
R G+ + +D DP ++YTSG+TGKPKG +H
Sbjct: 86 --ADGFLRR------GKRVDLKD-----------------DPAMIIYTSGTTGKPKGTVH 120
Query: 408 TTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
T G+ V A + FD KP D D GW+ G ++ G +L GA++V++EGAP Y
Sbjct: 121 THAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIVLYEGAPDY 179
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWR 527
PD R W IV+++KVT +PTL+R+L G+ V + SLRVLGS GEP +P +W
Sbjct: 180 PDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWL 239
Query: 528 WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI 587
W F VG R PI + TE G ++ +P P KP S P G+ +VDE G +
Sbjct: 240 WLFERVGGGRAPIINYSGGTEISGGILGNVPIR-PIKPCSFNGPSPGMDADVVDEDGRPV 298
Query: 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD-------------GCS 634
GE G L +++ WPG R + D ERY TY+ FPG + GD G S
Sbjct: 299 RGE-VGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVHGDWALVDEDGYWYILGRS 357
Query: 635 ------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELR 688
+G R+G AE+ES L SHP AEAA +GV VKG+ I FV L GV S L
Sbjct: 358 DDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALE 417
Query: 689 KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADP 747
L V +G P ++H+ LPKTR+GKIMRR++R Q GD S+L +P
Sbjct: 418 AELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIRAAYLGQ--PPGDLSSLENP 474
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 345 bits (888), Expect = e-112
Identities = 128/445 (28%), Positives = 193/445 (43%), Gaps = 52/445 (11%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY +L ++ +LA L+ +GV GD V I LP E +A+LA + GA + + +
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353
+ LA + D + KV+IT + + + LK +V AL
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV------------------- 101
Query: 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
+G D+ +++ + VD +D +++YTSG+TGKPKGV+ T +
Sbjct: 102 ----GDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLL 157
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
A + V G + +GP+L G ++V+ P R
Sbjct: 158 ALAAGLAERFGLTPGDRVLLLLP--LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPA--RL 213
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
D+++KYKVT+ Y PTL+R L++ E +Y SLR++ S GEP+ P R
Sbjct: 214 LDLIEKYKVTVLYGVPTLLRLLLKAPEE--KKYDLSSLRLVLSGGEPLPPELLRRLRERF 271
Query: 534 GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593
G P+ + + TET LPG KPGS P GV+ ++DE+G + G
Sbjct: 272 G--GVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVG 329
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD-------GC------------S 634
LCI+ PG R D E + + G Y TGD G
Sbjct: 330 ELCIRG--PGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKI 387
Query: 635 SGHRIGTAEVESALVSHPQCAEAAV 659
G RI E+E+ L+ HP AEAAV
Sbjct: 388 RGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 342 bits (880), Expect = e-110
Identities = 167/368 (45%), Positives = 213/368 (57%), Gaps = 36/368 (9%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
D EDP L +TSG+TGKPKGVLH + H AT +Y D +P DVYWCTAD GW+TG
Sbjct: 87 DPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATA-RYVLDLRPDDVYWCTADPGWVTGT 145
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
SY P+LNG ++VV EG D+ R + I+++ KVT++YTAPT +R LMR G E
Sbjct: 146 SYGIIAPLLNGVTLVVDEGEF---DAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAA 202
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
RY SLR + SVGEP+NP W V+G PI DTWWQTETG MI PG P K
Sbjct: 203 RYDLSSLRHIASVGEPLNPEVVVWGEKVLG---MPIHDTWWQTETGAIMIANYPGI-PVK 258
Query: 565 PGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
PGS P G++ +++ G + G L +K WP FR G+ ERY
Sbjct: 259 PGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYA---- 314
Query: 621 KPFP-GYYFTGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAVV 660
F G+Y TGD G ++GH +G EVESAL+ HP AEA V+
Sbjct: 315 SSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVI 374
Query: 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 720
G V G+ + AFV+L G SEELR+ L+ R+++GA AP +IH+ LPKTRSG
Sbjct: 375 GKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRSG 434
Query: 721 KIMRRILR 728
KIMRR+L+
Sbjct: 435 KIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 1e-90
Identities = 114/355 (32%), Positives = 169/355 (47%), Gaps = 36/355 (10%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447
DP F+LYTSG+TGKPKGV+ + + + + A DV + G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQ-AIGLTEGDVLLSVLPLFHVVGGGSG 59
Query: 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYS 507
G +L G +VV++EG P P S +++++Y+VT+ + PTL +L + + S
Sbjct: 60 LLGALLAGGTVVLYEGFPF-PLSF--LELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLS 116
Query: 508 RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS 567
SLR+L S GEP++P F G PI + + TET + P + +KPG+
Sbjct: 117 --SLRLLISGGEPLSPELLERFEERPG---APILEGYGLTETSVV-TSTNPDSELKKPGT 170
Query: 568 ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
P GV+ +VDE+G + G L ++ W + + + ETT G+Y
Sbjct: 171 VGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWV--MKGYWNN--PPETTAAATEDGWY 226
Query: 628 FTGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 668
TGD G G + AEVES L+ HP AEAAVVGV E +G
Sbjct: 227 RTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRG 286
Query: 669 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723
+ I AFV L G ++ L + L +R+++ + P I + LPKT SGKI
Sbjct: 287 ERIVAFVVLRPG---ADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 9e-88
Identities = 137/367 (37%), Positives = 184/367 (50%), Gaps = 35/367 (9%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A+DP L +TSG+TG PK VLHT Y + T Y D +P D++W AD GW G
Sbjct: 78 TSADDPALLYFTSGTTGLPKMVLHTHS-YPLGHLVTGAYWLDLRPDDLHWTIADPGWAKG 136
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ P L GA+V V+ G D+ R+ +++++Y VT F PT R L++ +
Sbjct: 137 AWSSLFAPWLLGAAVFVYHGRRF--DAERTLELLERYGVTTFCAPPTAYRMLLQQD---L 191
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ 563
+ Y LR + S GEP+NP W+ G PI D + QTETG ++ PG
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWRAATG---LPIRDGYGQTETG-LLVANFPGM-EV 246
Query: 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS--WPGAFRTLYGDHERYETTYFK 621
KPGS P G + I+D++G E+ G + ++ PG FR D E+ E T
Sbjct: 247 KPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRG 306
Query: 622 PFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAVVGV 662
+Y TGD SSG+RIG EVESAL+ HP AEAAVVG
Sbjct: 307 ---DWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGS 363
Query: 663 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 722
V+G+ + AFV L G SEEL K L V+K+ + P +I + LPKT SGKI
Sbjct: 364 PDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKI 423
Query: 723 MRRILRK 729
R LR
Sbjct: 424 RRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 260 bits (667), Expect = 3e-77
Identities = 173/631 (27%), Positives = 258/631 (40%), Gaps = 88/631 (13%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWK------EKWGQRVCSENLDVRKGNVKIEWFKGGI 198
Y +++ SVED A FW + W K V WF G
Sbjct: 8 YHALWRWSVEDLAAFWESV-----WDFFDVIGSKGYVVVLDG-----DIMPGARWFPGAR 57
Query: 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258
N N L D AIY D +++++L QV +LA L+D+GVK GD
Sbjct: 58 LNYAENLLRH----ADNDPAAIYAAGEDGERR-EISWAELRSQVARLAAALRDLGVKPGD 112
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
V YLP + E IAMLA A IGA+ S F +++ R +PKV+ +
Sbjct: 113 RVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNG 172
Query: 319 KAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
K + E K S+ V + S K+ +W
Sbjct: 173 KEHD----RREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDR--AA 226
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG--------YMVHTATTFKYAFDYKPS 429
E E + + PL++LY+SG+TG PK ++H GG + +H D +P
Sbjct: 227 PLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLKEHGLHC--------DLRPG 278
Query: 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAP 489
D + GW+ + V +L+GA++V+++G+P YPD W + K +TIF T+
Sbjct: 279 DRLFYYTTTGWMMWNWLV--SGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSA 336
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET 549
+ +L + G E + SLR + S G P+ P + W ++ V SD W + +
Sbjct: 337 KYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVK------SDVWLASIS 390
Query: 550 GGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602
GG T + G + P G G+ DE+G + GE G L +P
Sbjct: 391 GG---TDICGCFVGGNPTLPVYRGEIQCRGLGMAVEAFDEEGKPVIGE-VGELVCTKPFP 446
Query: 603 GAFRTLY----GDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRI 639
LY D RY YF FPG + GD G RI
Sbjct: 447 S--MPLYFWNDPDGSRYRDAYFDTFPGVWRHGDWIKITPHGGVIIYGRSDATLNPGGVRI 504
Query: 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 699
GTAE+ + P+ ++ VVG E + + + FV L EGV + L K + A+R +
Sbjct: 505 GTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLDDALVKRIRSAIRAAL 564
Query: 700 GAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730
P +I P +P T SGK + ++KI
Sbjct: 565 SPRHVPAEIIAVPDIPYTLSGKKVEVAVKKI 595
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 1e-76
Identities = 151/532 (28%), Positives = 216/532 (40%), Gaps = 50/532 (9%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ G LTY +L ++ +LA L+ +GVK GD V I LP E IA
Sbjct: 25 PDRPALI----FLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R GAV + + LA + D KV+ITS +++A +
Sbjct: 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAE---------FAALLEAVAEAL 131
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW-VDAEDPLFLL 393
+ + V D I + + + P VD +D FLL
Sbjct: 132 PVVLVVLLVGDA--------------DDRLPITLEALAAEGPGPDADARPVDPDDLAFLL 177
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
YTSG+TG PKGV+ T + + A P DV I G P+
Sbjct: 178 YTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPL 237
Query: 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
L G ++V+ P D +++KYKVT+ PT +R L+ + + S SLR
Sbjct: 238 LGGGTLVLLSPEP--FDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSS-SLR 294
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF 572
++ S G P+ P F G I + + TET + P KPGS P
Sbjct: 295 LVLSGGAPLPPELLERFEERFG--PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPL 352
Query: 573 FGVQPVIVDEKGVEIEGECSGYLCIKSSW--------PGAFRTLYGDHERYET---TYFK 621
GV+ IVD G E+ G + ++ P A + + T Y
Sbjct: 353 PGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVD 412
Query: 622 PFPGYYFTGDGC----SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677
Y G S G I E+E+ L HP AEAAVVGV E G+ + A V L
Sbjct: 413 EDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVL 472
Query: 678 VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
G +E + L +RK++ + P + + LP+T SGKI RR LR+
Sbjct: 473 KPGGD-AELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALRE 523
|
Length = 534 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 4e-74
Identities = 182/660 (27%), Positives = 275/660 (41%), Gaps = 92/660 (13%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWK-EKWGQRVCSEN--LDVRKGNVKIEWFKGGITNI 201
Y +++ SVED FW + F V + R WF G N
Sbjct: 36 YAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGRRMPGAR-------WFPGARLNY 88
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
N L R+ D+ AI + G L++++L +QV LA L+ +GV GD V
Sbjct: 89 AENLL-RH---RRDDRPAI-IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVA 143
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
YLP + E +AMLA A +GA+ S F + R +PKV+I + + G KA
Sbjct: 144 AYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAF 203
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK-CE 380
+ V A L S V V + Y +A W+D + E
Sbjct: 204 DRRAKV-AELRAALPSLEHV-VVVPYLGPAAAAAALPGALL-----WEDFLAPAEAAELE 256
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV--------HTATTFKYAFDYKPSDVY 432
E V + PL++LY+SG+TG PK ++H GG ++ H D P D +
Sbjct: 257 FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC--------DLGPGDRF 308
Query: 433 -WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
W T CGW+ + V +L GA++V+++G+P YPD WD+ + VT+F T+
Sbjct: 309 FWYTT-CGWMMWNWLV--SGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKY 365
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+ + + G + +LR +GS G P+ P + W + V +D W + +GG
Sbjct: 366 LDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVK------ADVWLASISGG 419
Query: 552 FMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604
T + + P G G+ DE G + GE G L +P
Sbjct: 420 ---TDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPVVGE-VGELVCTKPFPS- 474
Query: 605 FRTLY----GDHERYETTYFKPFPGYYFTGD--------GC-----SS------GHRIGT 641
L D RY YF FPG + GD G S G RIGT
Sbjct: 475 -MPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGT 533
Query: 642 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA 701
AE+ + + P+ ++ V+G E + FV L EGV + LR + +R +
Sbjct: 534 AEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSP 593
Query: 702 FAAPDKIHWAPGLPKTRSGKIM----RRILRKIASRQLDELGDTSTLADPGVVDQLIALA 757
PDKI P +P+T SGK + +++L R + + + LA+P +D LA
Sbjct: 594 RHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG---RPVKKAVNRDALANPEALDWFADLA 650
|
Length = 655 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 6e-74
Identities = 134/369 (36%), Positives = 183/369 (49%), Gaps = 42/369 (11%)
Query: 387 EDPLFLLYTSGSTGKPKGV------LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
+D +YTSG+TG PKGV L YM +YA D + DV+W AD GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYM-------RYAIDLRDDDVFWNIADPGW 140
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
G Y GP+ G + V EG T ++ +D++++ VT F +PT R LM G
Sbjct: 141 AYGLYYAITGPLAMGITTVFLEGGFTAENT---YDVLERLGVTNFAGSPTAYRMLMAAGA 197
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ R K LRV S GEP+NP RWF +G I D + QTETG + A
Sbjct: 198 DAAARIKLK-LRVASSAGEPLNPEVVRWFQANLG---VTIHDHYGQTETGMPVGNHHALA 253
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK-SSWPGAFRTLYGDHERYETTY 619
+ GS P G + ++D+ G + G L I +S P + + Y D E T
Sbjct: 254 HEVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDP--EKTA 311
Query: 620 FKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAVV 660
+Y TGD S+G+RIG +VESAL+ HP AEAAVV
Sbjct: 312 ELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVV 371
Query: 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 720
GV ++G+ + AFV L EG S+EL + L L V+K++ A A P ++ + P LPKT SG
Sbjct: 372 GVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSG 431
Query: 721 KIMRRILRK 729
KI R +LR+
Sbjct: 432 KIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 1e-72
Identities = 174/646 (26%), Positives = 296/646 (45%), Gaps = 91/646 (14%)
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEF-YWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
P Y + +P FW ++A ++ +W +K +V S + + +WFKGG N
Sbjct: 7 PFDYENDSNYANSNPESFWDEVAKKYVHW-DKMYDKVYSGD------EIYPDWFKGGELN 59
Query: 201 ICYNCLDRNIEAGLG-DKVAIYWEANDPGVDAT--LTYSQLLQQVCQLANYLKDIGVKKG 257
CYN LD +++ L D+ A+ +E P + T LTY QL ++VC+ + L ++ + K
Sbjct: 60 TCYNVLDIHVKNPLKRDQDALIYEC--PYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKN 117
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN----- 312
D V+IY+ +E IAML+CARIGA H V+F G+S SL RI PK++IT+N
Sbjct: 118 DNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILN 177
Query: 313 --AVKRGP---KAIHLK-------------DIVDAALDECAKSGISVDVCLTYENQSAMT 354
+ P +AI L DI + + ++ ++ L++ ++
Sbjct: 178 DEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKI 237
Query: 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
+EN + P Y E V++ PL++LYTSG+TG K V+ + G ++V
Sbjct: 238 KENNQ------------SPFY----EYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLV 281
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS- 473
++ + V + + GW++ H ++ YG + G + V+FEG
Sbjct: 282 GLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFL-YGSLSLGNTFVMFEGGIIKNKHIEDD 340
Query: 474 -WDIVDKYKVTIFYTAPTLVRSLMR---DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
W+ ++K+KVT T P +R L++ + ++Y +L+ + GE I S +
Sbjct: 341 LWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI 400
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSAT-FPFFGVQPVIVDEKGVEI 587
N + + S + QTE G IT L P +AT P ++P I+ E G E+
Sbjct: 401 ENKL---KIKSSRGYGQTEIG---ITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKEL 454
Query: 588 EGECSGYLCIKSSWPGAF-RTLYGDHERYETTYFKPFPGYYFTGD-------GC------ 633
G + K P +F T Y + E+++ + K FPGYY +GD G
Sbjct: 455 NVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK-FPGYYNSGDLGFKDENGYYTIVSR 513
Query: 634 ------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-- 685
SG+++ +E++++ HP E +G+ + L +
Sbjct: 514 SDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSID 573
Query: 686 --ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+L+ + + + I + A KI LPKT++GKI R+I+ K
Sbjct: 574 LNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISK 619
|
Length = 647 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 8e-61
Identities = 146/548 (26%), Positives = 229/548 (41%), Gaps = 60/548 (10%)
Query: 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKG 257
I N LDR++ G GDK+A+Y D +LTY +L ++V + N L+++G+++
Sbjct: 2 IFNAAVYFLDRHLNEGRGDKIALY----YD--DGSLTYGELQEEVNRWGNALRELGIERE 55
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRG 317
+ V++ L E P A +IGAV + + D + D + +V++ S
Sbjct: 56 NRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEE---- 111
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
L +++ AL + + + + ++
Sbjct: 112 -----LWEVLKPALQK-----------DPHLRHVIVVGGAGPGAL----SYAQLIATAAE 151
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTA 436
+ E A+D F LY+SGSTG+PKGV+H M+ TA + K DV + A
Sbjct: 152 ELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHD-MLVTAEAYAKNVLGITEDDVVFSAA 210
Query: 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496
+ G Y P+ GA+ V+ PT PD + +++YK T+F+ PTL +++
Sbjct: 211 KLFFAYGLGNGLYFPLSVGATTVLMPERPT-PD--AVFATIERYKPTVFFGVPTLYAAML 267
Query: 497 RDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556
SLR+ S GE + + + G I D TE ++
Sbjct: 268 AAPE--KPERDLSSLRLCVSAGEALPAEIGYRWKELFG---LEILDGIGSTEMLHIFLSN 322
Query: 557 LPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 616
PGA K G++ P G + +VDE G E+ G L ++ + + E+
Sbjct: 323 RPGA--VKYGTSGKPVPGYEVKLVDEDGEEVADGEIGELWVRG--DSSAAGYWNRREKTR 378
Query: 617 TT----YFKPFPGYYFTGDGC------------SSGHRIGTAEVESALVSHPQCAEAAVV 660
T + + YY DG SG + EVE AL+ HP EAAVV
Sbjct: 379 ETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVV 438
Query: 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 720
G E E AFV L +G S EL L V+ ++ + P I + LPKT +G
Sbjct: 439 GAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATG 498
Query: 721 KIMRRILR 728
KI R LR
Sbjct: 499 KIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 1e-59
Identities = 167/553 (30%), Positives = 239/553 (43%), Gaps = 59/553 (10%)
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N Y+ +D DK+A+ W +D G + T+ L + AN+ K +G+ KGD
Sbjct: 17 NFAYDVVDA-YADEEPDKLALIW-CDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDT 74
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI--MDCKPKVVITSNAVKRG 317
V++ L E +MLA +IGA+ ++ + RI K V I + V
Sbjct: 75 VMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVP-- 132
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
+ +D A EC + V V W D ++ P +
Sbjct: 133 -------EHIDEAAPECGSPTLLVLV---------GDPVPEGWIDFDKEI-ENASPDFER 175
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437
+ +D L + +TSG+TG PK V H + H T KY + K ++ AD
Sbjct: 176 PTGNDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTA-KYWQNVKEGGLHLTVAD 234
Query: 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
GW YG + GA+V V++ P + + ++KY VT F PT+ R L++
Sbjct: 235 TGWGKAVWGKLYGQWIAGAAVFVYDYDKFDPKN--LLEKIEKYGVTTFCAPPTIYRFLIK 292
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
E +++Y SLR + GEP+NP + F G + + + QTET I
Sbjct: 293 ---EDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIK---LMEGFGQTETT-LTIATF 345
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS--WP-GAFRTLYGDHER 614
P P KPGS P G I+D G E G + I++S P G F Y D ER
Sbjct: 346 PWMEP-KPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPER 404
Query: 615 YETTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCA 655
+ GYY TGD SSG+RIG EVESAL+ HP
Sbjct: 405 TAEVWHD---GYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVL 461
Query: 656 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 715
E AV GV ++GQ + A + L +G SEEL+K L V+K + P I + LP
Sbjct: 462 ECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFVDELP 521
Query: 716 KTRSGKIMRRILR 728
KT SGKI R +R
Sbjct: 522 KTISGKIRRVEIR 534
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 1e-56
Identities = 116/365 (31%), Positives = 172/365 (47%), Gaps = 33/365 (9%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDVYWCTADCGWITG 443
++DP L+YTSG+TG PKG LH + H + F+ +P DV+W AD WI G
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPG-VELYFELAPRPGDVFWTPADWAWIGG 145
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
V + G VV + D R++ ++ +Y VT + PT ++ + R G+E
Sbjct: 146 LLDVLLPALYFGVPVVAYR--MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSE-R 202
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ 563
RY + LR + S GE + W + +G +++ + QTE ++ P
Sbjct: 203 ARYDLR-LRAVASGGESLGEELLEWARDELGL---TVNEFYGQTEANL-VVGNCAALGPA 257
Query: 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623
+PGS P G + +VD+ G + G + +K P F Y ++ E T K
Sbjct: 258 RPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLG-YWNNP--EATAAKFA 314
Query: 624 PGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEH 664
+ TGD SSG+RIG AE+E L+ HP EAAVVGV
Sbjct: 315 GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPD 374
Query: 665 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724
+G+ + AFV L EGV S+EL L V+ ++ A P +I + LP T +GKI R
Sbjct: 375 PERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRR 434
Query: 725 RILRK 729
R LR+
Sbjct: 435 RELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 3e-56
Identities = 149/634 (23%), Positives = 267/634 (42%), Gaps = 55/634 (8%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204
Y +++ SV++ FW + W + C+ +D R +WF G N N
Sbjct: 37 YDALHRWSVDELDTFWKAVWE---WFDVRFSTPCARVVDDRTM-PGAQWFPGARLNYAEN 92
Query: 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL 264
L R + +Y ++ A +T+++L +QV LA L+ +GV+ GD V YL
Sbjct: 93 LL-RAAGT---EPALLY--VDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYL 146
Query: 265 PMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 324
P + + +AMLA A +GA+ S F + + R +PK++ T + + K +
Sbjct: 147 PNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRR 206
Query: 325 DIVDAALDECAKSGISVDVCLTYENQS-AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 383
D V E V + ++ A + + Q + E
Sbjct: 207 DKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVF------EQ 260
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
+ + PL++L++SG+TG PK ++H+ GG +V D P D + GW+
Sbjct: 261 LPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW 320
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ V+ + GA++V+++G+P +P + WDI ++ T+F T+ V + + G
Sbjct: 321 NWLVS--GLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPA 378
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGF-MITPLPGAWP 562
+ +L+ + S G P+ P +RW + +D W + +GG + + GA P
Sbjct: 379 RTHDLSALQCVASTGSPLPPDGFRWVY------DEIKADVWLASISGGTDICSCFAGANP 432
Query: 563 QKP---GSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYET 617
P G P G D +G + GE G L + P + D + +Y
Sbjct: 433 TLPVHIGEIQAPGLGTAVQSWDPEGKPVTGE-VGELVCTNPMPSMPIRFWNDPDGSKYRD 491
Query: 618 TYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAA 658
YF +PG + GD + G R+G+AE+ +A+ + E+
Sbjct: 492 AYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESL 551
Query: 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 718
+G E G + FV L G + L + +R + PD+I PG+P T
Sbjct: 552 CIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTL 611
Query: 719 SGKIMRRILRK-IASRQLDELGDTSTLADPGVVD 751
+GK + +++ + +D G + +P ++D
Sbjct: 612 TGKRVEVAVKRVLQGTPVDNPG---AIDNPELLD 642
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 2e-52
Identities = 144/567 (25%), Positives = 225/567 (39%), Gaps = 125/567 (22%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL---PMLMELP 271
DK A+Y++ TY++L ++V +LAN L+ +GVKKGD V ++ +E
Sbjct: 20 PDKEAVYFD------GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLE-- 71
Query: 272 IAMLACARIGAV-HSV-VFAGFSSDSLAQRIMDCKPKVVITSNAV-----KRGPKAIHLK 324
A A +IGAV H + + + +A + D + +VV+ + P+ ++
Sbjct: 72 -AYFAVPKIGAVLHPINIR--LKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVR 128
Query: 325 DIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
++ + + ++ +V YE A + + D +
Sbjct: 129 TVI--VEGDGPAAPLAPEV-GEYEELLAAASDTFDFPD---------------------I 164
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY-----------W 433
D D +LYTSG+TG PKGV+ + +H+ DVY W
Sbjct: 165 DENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAV-CAWLKLSRDDVYLVIVPMFHVHAW 223
Query: 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS---GRSWDIVDKYKVTIFYTAPT 490
G Y ++ GA V P D+++ +VT F+ PT
Sbjct: 224 -----GL-------PYLALMAGAKQV-------IPRRFDPENLLDLIETERVTFFFAVPT 264
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
+ + L++ Y +S SLR++ G + P+ R F G + + TET
Sbjct: 265 IWQMLLKAPRAYFVDFS--SLRLVIYGGAALPPALLREFKEKFG---IDLVQGYGMTETS 319
Query: 551 GFM-ITPL----PGAWPQKPGSATFPFFGVQPVIVDEKGVEIE--GECSGYLCIKSSWPG 603
+ + P PG W K SA P GV+ IVD+ G E+ G G + ++ W
Sbjct: 320 PVVSVLPPEDQLPGQWT-KRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPW-- 376
Query: 604 AFRTL--YGDHERYETTYFKPFPGYYFTGD-GC------------------SSGHRIGTA 642
+ E T G+ TGD G S G I
Sbjct: 377 --LMQGYWNRPEATAETIDG---GWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPR 431
Query: 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-ELRKSLVLAVRKQIGA 701
E+E AL HP AE AV+GV E G+ A V L G ELR L R ++
Sbjct: 432 ELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFL----RGRLAK 487
Query: 702 FAAPDKIHWAPGLPKTRSGKIMRRILR 728
F P +I + LP+T GKI++R+LR
Sbjct: 488 FKLPKRIAFVDELPRTSVGKILKRVLR 514
|
Length = 521 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 6e-52
Identities = 123/374 (32%), Positives = 172/374 (45%), Gaps = 49/374 (13%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
A+DP+ L +TSG+TG PK VLHT Y V +T Y +P D++ + GW H
Sbjct: 82 RADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTM-YWIGLQPGDIHLNISSPGW-AKH 139
Query: 445 SYVT-YGPMLNGASVVVFEGAPTYP--DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
++ + + P GA+V YP D+ R ++K+ VT F PT+ R ++ +
Sbjct: 140 AWSSFFAPWNAGATVFGIN----YPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQ---Q 192
Query: 502 YVTRYSRKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
+ +Y LR S GEP+NP + + + I D + QTET MI P
Sbjct: 193 DLAQY-DVRLREAVSAGEPLNPEVIERVKKAWGLT------IRDGYGQTETTA-MIGNSP 244
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK-SSWP-GAFRTLYGDHERYE 616
G KPGS P G + V++D++G EI G + + P G GD E+
Sbjct: 245 GQ-KVKPGSMGRPLPGYRVVLLDDEGKEIPVT-EGEIALDLGDRPIGLMLGYMGDPEK-- 300
Query: 617 TTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEA 657
T GYY TGD SS +RI EVESAL+ HP AEA
Sbjct: 301 -TAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEA 359
Query: 658 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717
AVV ++ A++ L G S EL L VR+++ + +I + LPKT
Sbjct: 360 AVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGELPKT 419
Query: 718 RSGKIMRRILRKIA 731
SGKI R LRKI
Sbjct: 420 ISGKIRRVELRKIE 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-46
Identities = 105/364 (28%), Positives = 157/364 (43%), Gaps = 44/364 (12%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+DP +LYTSG+TG+PKGV+ T + + D P DVY A G +
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNA-LAGVDLSPGDVYLLAAPLYHAAGGLF 59
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
+ + G +VV+ D D++++++VT + PT+ + L+R + RY
Sbjct: 60 LLPA-LAAGGTVVLMPK----FDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPD--FARY 112
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG 566
SLR++ P+ R G + TETG P W +K G
Sbjct: 113 DLSSLRLIIYGAAPMPAELKRAMIEWFG---PVFVQGYGMTETGPTTTLLSPEDWLRKLG 169
Query: 567 SATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT--YFKPF 623
S P GV+ IVDE G E+ GE G + ++ P G R E T +
Sbjct: 170 SVGRPVPGVEVRIVDEDGRELPPGEV-GEIVVRG--PAVMA---GYWNRPEATAEALR-- 221
Query: 624 PGYYFTGD-GC------------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEH 664
G+ TGD G S G I AEVE+ L++HP A+ AV+GV
Sbjct: 222 DGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPD 281
Query: 665 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724
E G+ + A V L G E L+ R+++ + P + + LP+ SGKI++
Sbjct: 282 EEWGEAVVAVVVLRPGATLDAE---ELIAFCRERLAGYKVPKSVEFVDELPRNASGKILK 338
Query: 725 RILR 728
R LR
Sbjct: 339 RELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 1e-46
Identities = 147/540 (27%), Positives = 234/540 (43%), Gaps = 73/540 (13%)
Query: 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279
W N G + ++ +L + AN L G+++GD V + LP + E + +AC R
Sbjct: 30 LWWVNGKGDEVKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIR 89
Query: 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339
G V ++ + R+ K K ++TS+ + VD+ EC
Sbjct: 90 TGLVFIPGTIQLTAKDILYRLQASKAKCIVTSDELAPA---------VDSIASECPSLKT 140
Query: 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGST 399
+ V S +R+ W + +++++ + T+ +++P+ + +TSG+T
Sbjct: 141 KLLV-------SEHSRDG--WLN-----FKELLKEASTEHTCVKTKSQEPMAIYFTSGTT 186
Query: 400 GKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459
G PK H+ + +Y D PSD+ W +D GWI + + P + GA V
Sbjct: 187 GFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVF 246
Query: 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519
V P + KY +T F +APT+ R L++ + +T Y KSLR + GE
Sbjct: 247 VHHLPRFDPKV--ILQTLSKYPITTFCSAPTVYRMLVQ---QDLTSYKFKSLRHCVTGGE 301
Query: 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS--ATFPFFGVQP 577
P+NP + G + + + QTETG +I KPGS P + VQ
Sbjct: 302 PLNPEVLEQWKAQTG---LDLYEGYGQTETG--LICANFKGMKIKPGSMGKASPPYDVQ- 355
Query: 578 VIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLY-GDHERYETTYFKPFPGYYFTGDG 632
I+D+ G + EG+ + +K + P + Y + E+ T F Y TGD
Sbjct: 356 -IIDDNGNVLPPGTEGDIG--IRVKPTRPFCLFSCYVDNPEKTAATIRGDF---YITGDR 409
Query: 633 -------------------CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 673
SSG+RIG EVESAL+ HP E+AVV ++G+ + A
Sbjct: 410 GIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKA 469
Query: 674 FVTLVEGVPYS----EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
FV L + E+L K L V+ + P K+ + LPKT +GKI R LR
Sbjct: 470 FVVLAP--QFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRD 527
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 4e-46
Identities = 104/370 (28%), Positives = 160/370 (43%), Gaps = 48/370 (12%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADC--GWI 441
+A+D + LYTSG+TGKPKGV+H + A F + +P D + ++ +
Sbjct: 89 EADDIAYWLYTSGTTGKPKGVMHRHRD-PLTFAEAFARELLGLQPGDRIFSSSKLFFAYG 147
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
G+S P+ +GAS V+ P +P D++ +++ T+ + P L R+L+ G
Sbjct: 148 LGNSL--LFPLFSGASAVL---LPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA- 201
Query: 502 YVTRYSRKSLRVLGSVGEPINPSA----WRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
+ +S+R+ S GE + P+ W I D TE I+
Sbjct: 202 -GSAPLFRSVRLCVSAGEAL-PAGLAERWAEATG------IEILDGIGSTEVLHIFISNR 253
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617
PGA +PG+ P G + +VDE G E+ G L ++ P G E
Sbjct: 254 PGAA--RPGTTGRPVPGYEARLVDESGREVPAGTVGDLWVRG--PSLAP---GYWNLPEK 306
Query: 618 TYFKPFPGYYFTGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAA 658
T G+ TGD G SG + EVE+AL HP AEAA
Sbjct: 307 TQRTLRDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAA 366
Query: 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 718
VV V E + AFV G + L + L +R+++ + P +I + LP+T
Sbjct: 367 VVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTA 426
Query: 719 SGKIMRRILR 728
+GK+ R LR
Sbjct: 427 TGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 6e-43
Identities = 130/533 (24%), Positives = 209/533 (39%), Gaps = 96/533 (18%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
LT++ LL++ +LA L+ +G+K+GD V + P +E P L C G + S +
Sbjct: 10 ELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSY 69
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDV-CLTYENQ 350
+ D LA ++ KPK++ D +D + + G V + L
Sbjct: 70 TPDELAHQLKISKPKLIFCD------------PDELDKVKEAAKELGPVVRIIVLDSAPD 117
Query: 351 SAMTREN-TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ E+ + + G + ++ +D LLY+SG+TG PKGV+ +
Sbjct: 118 GVLRIEDLLEPRLGAEDEFRPTPLI---------DGKDDTAALLYSSGTTGLPKGVMLSH 168
Query: 410 GGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITG-HSYVTYGPMLNGASVVVFEGAPT 466
+ +DV G + + +L GA+V++
Sbjct: 169 KNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLAS--LLCGATVIIM----P 222
Query: 467 YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAW 526
DS +++KYKVT + P + +L + V +Y SLRV+ S P++
Sbjct: 223 KFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPL--VDKYDLSSLRVIFSGAAPLSKELQ 280
Query: 527 RWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586
I + TETG PG KPGS V+ IVDE G +
Sbjct: 281 EELRKRF--PNTTIKQGYGMTETGPATTLTPPGDE--KPGSVGRLVPNVEAKIVDEDGGK 336
Query: 587 I-----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSSGHRIGT 641
GE LC+K P + + E + T + G+ TGD IG
Sbjct: 337 SLGPNERGE----LCVKG--PQIMKGYLNNPEATKETIDE--DGWLHTGD-------IGY 381
Query: 642 --------------------------AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFV 675
AE+E+ L+ HP+ A+AAV+G+ EV G+ A+V
Sbjct: 382 FDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYV 441
Query: 676 TLVEGVPYSEELRKSLV---LAVRKQI--GAFAAPDKIHWAPGLPKTRSGKIM 723
L G +E+ K V +A KQ+ G + +PK+ SGKI+
Sbjct: 442 VLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVVFVDE-------IPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 7e-42
Identities = 140/569 (24%), Positives = 213/569 (37%), Gaps = 134/569 (23%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ + D + TY++L V ++A L D+G+KKGD V + L
Sbjct: 26 DKTALVFG------DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
ACAR GAVH V + + LA + + + A L +AAL
Sbjct: 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---------LAPTAEAALALLP 130
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + + L + W + P +VE + +D +LYT
Sbjct: 131 VDTLILSLVLGGREAPGGWLDFADWAEAGS----VAEP------DVE-LADDDLAQILYT 179
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKY-----AFDYKPSDV-------YWCTADCGWITG 443
SG+ PKG + T H A +Y A D D+ Y C
Sbjct: 180 SGTESLPKGAMLT------HRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQ------- 226
Query: 444 HSYVTYGPMLN-GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
V GP L GA+ V+ + PD ++ ++T F+ PT+ SL+R +
Sbjct: 227 -LDVFLGPYLYVGATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD-- 279
Query: 503 VTRYSRKSLR------------VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
SLR VL + E + P F+N G QTE
Sbjct: 280 FDTRDLSSLRKGYYGASIMPVEVLKELRERL-PGL--RFYNCYG-----------QTE-- 323
Query: 551 GFMITPL-----PGAWPQKPGSATFPFFGVQPVIVDEKGVEI-EGE-----------CSG 593
I PL P ++PGSA P V+ +VD+ G ++ GE G
Sbjct: 324 ---IAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLG 380
Query: 594 YL--------CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC-----SSGHRIG 640
Y + W F + GD + GY D + G +
Sbjct: 381 YWDDPEKTAEAFRGGW---FHS--GDLGVMDEE------GYITVVDRKKDMIKTGGENVA 429
Query: 641 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 700
+ EVE AL +HP AE AV+G+ + + A V G +E+ L+ R ++
Sbjct: 430 SREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTED---ELIAHCRARLA 486
Query: 701 AFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
F P ++ + LP+ SGKI++R LR+
Sbjct: 487 GFKVPKRVIFVDELPRNPSGKILKRELRE 515
|
Length = 523 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-41
Identities = 96/368 (26%), Positives = 151/368 (41%), Gaps = 46/368 (12%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+DP + YTSG+TG+PKG + T +++ + D + G
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRN-VLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLV 59
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+ GA++V+ D G + ++++ ++T + PT+ +L+ + +
Sbjct: 60 LGVLASLTAGATLVL----MEKFDPGAALRLIERERITALHGVPTMFIALLEHPDF--DK 113
Query: 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP-QK 564
+ SLR S G P+ P R I+ + TET G +
Sbjct: 114 FDLSSLRTGISGGAPVPPELVRRIREEFPM--AEITTGYGMTETSGVGTQTSGDDPYEDR 171
Query: 565 PGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
PG+ P GV+ IVD G E+ GE +C++ + Y D E
Sbjct: 172 PGTVGRPLPGVEVKIVDPDGGEVPPGEVGE----ICVRG--YSVMKGYYNDPEATAEAID 225
Query: 621 KPFPGYYFTGDGCS---SGH-----R-----------IGTAEVESALVSHPQCAEAAVVG 661
G+ TGD G+ R I AE+E AL++HP AEAAVVG
Sbjct: 226 AD--GWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVG 283
Query: 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLA-VRKQIGAFAAPDKIHWAPGLPKTRSG 720
V E G+ + AFV L G +EE ++A R ++ F P + + LP+T SG
Sbjct: 284 VPDERLGEVVAAFVVLKPGATLTEE----ELIAFCRGRLARFKVPRYVRFVDELPRTASG 339
Query: 721 KIMRRILR 728
KI + LR
Sbjct: 340 KIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-40
Identities = 109/371 (29%), Positives = 155/371 (41%), Gaps = 61/371 (16%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447
D +LYTSG+TG PKGVL T ++ A +P DV I +Y
Sbjct: 82 DTAAILYTSGTTGPPKGVL-LTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYS 140
Query: 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR---DGNEYVT 504
Y +L GA++V+ P + + R WD V K+ T+F + LM+ ++
Sbjct: 141 VYAALLVGATLVL---LPRF-SASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDD--- 193
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
LR + P+ + W F F V + + + TETG +I P
Sbjct: 194 --RDHPLRFVFGA--PLPAAIWPAFEERFGV------KLVEGYGMTETGVPIIAPGD--- 240
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY-GDHERYETTYF 620
P PGS P GV+ IVDE G E+ G L ++ P A Y G E T
Sbjct: 241 PAPPGSCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPE--ATA-- 296
Query: 621 KPFP-GYYFTGDGCSSGHR----------------------IGTAEVESALVSHPQCAEA 657
K + G++ TGD G R I + EVE+A+++HP AEA
Sbjct: 297 KAWRNGWFHTGD---RGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEA 353
Query: 658 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717
AVV V E+ + A V L G E +L+ R ++ F P I + LPKT
Sbjct: 354 AVVAVPSELGEDEVKAVVVLRPGETLDPE---ALLEFCRDRLPYFMVPRYIEFVDELPKT 410
Query: 718 RSGKIMRRILR 728
+ KI + LR
Sbjct: 411 PTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 4e-39
Identities = 151/548 (27%), Positives = 227/548 (41%), Gaps = 74/548 (13%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
LDRN+ G G K A D ++L+Y +L QV +L L+ +GVK+ + V++ +
Sbjct: 10 LDRNVVEGRGGKTAF----IDDI--SSLSYGELEAQVRRLGAALRRLGVKREERVLLLML 63
Query: 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI---- 321
++ PIA L R G V + ++D A + D + +VV S + KA
Sbjct: 64 DGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKS 123
Query: 322 -HLKDIVDAALDECAKSGISVDVCLTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
HL+ V E + ++ + E + A T+
Sbjct: 124 PHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQ------------------------ 159
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADC 438
A+DP F LY+SGSTG PKGV+HT TA + + + DV + A
Sbjct: 160 ------ADDPAFWLYSSGSTGMPKGVVHTHSN-PYWTAELYARNTLGIREDDVVFSAAKL 212
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G PM GA+ V+ PT PD +D + +++ TIFY PTL +++ D
Sbjct: 213 FFAYGLGNALTFPMSVGATTVLMGERPT-PD--AVFDRLRRHQPTIFYGVPTLYAAMLAD 269
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSA---WRWFFNVVGDSRCPISDTWWQTETGGFMIT 555
N + + LR+ S GE + W+ F V I D TE ++
Sbjct: 270 PN--LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGV------DIVDGIGSTEMLHIFLS 321
Query: 556 PLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAF---------R 606
LPG + G++ P G + +V + G ++ G L I
Sbjct: 322 NLPGD--VRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRD 379
Query: 607 TLYGDHERYETTYFKPFPGYY-FTGDGCS----SGHRIGTAEVESALVSHPQCAEAAVVG 661
T G+ R Y + G Y + G SG + E+ESAL+ HP EAAVVG
Sbjct: 380 TFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVG 439
Query: 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
VE E AF+ L G L L V+ ++ + P I + LPKT +GK
Sbjct: 440 VEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGK 499
Query: 722 IMRRILRK 729
I R LR+
Sbjct: 500 IQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 6e-39
Identities = 132/537 (24%), Positives = 215/537 (40%), Gaps = 75/537 (13%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
GD+ A+ D LTY++L + V +LA L G +KGD V++ P +E P+
Sbjct: 19 GDRPALI----DAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVF 74
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA GAV + ++ +A+++ D K+ IT++ + + + AL+
Sbjct: 75 LAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSEL--------AEKLASLALEP- 125
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
V + + ++ SA + + V + +D L Y
Sbjct: 126 ------VVLLDSADDGSAAIDDLLFAD--------------EPEPPVVVIKQDDVAALPY 165
Query: 395 TSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
+SG+TG+ KGV+ T + + A ++ DV C I G + + +
Sbjct: 166 SSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLR 225
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
GA+VVV P + D + ++KYKVT P +V +L++ + V +Y SL+
Sbjct: 226 LGATVVVM---PRF-DLEKFLAAIEKYKVTHLPVVPPIVLALVK--HPIVDKYDLSSLKQ 279
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+GS P+ F + + TE+ KPGS
Sbjct: 280 IGSGAAPLGKELAEAFRARFPG--VELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVP 337
Query: 574 GVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
V+ IVD E G + G L ++ P + + E T K G+ TGD
Sbjct: 338 NVEAKIVDPETGESLPPNQPGELWVRG--PQVMKGYLNNPEATAETIDKD--GWLHTGDL 393
Query: 633 CS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 673
G ++ AE+E+ L+SHP+ A+AAV+ E G+ A
Sbjct: 394 GYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMA 453
Query: 674 FVTLVEGVPYSEELRKSLV---LAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
FV G SE+ V +A K++ D I PK+ SGKI+RR L
Sbjct: 454 FVVRQPGSELSEDEVMQFVAKQVAPYKKVRKVVFVDAI------PKSPSGKILRREL 504
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 4e-37
Identities = 113/373 (30%), Positives = 160/373 (42%), Gaps = 57/373 (15%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+DP +L+TSG+TG+PKGV T ++ +A + PSD I G
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKN-LLASARNIAKSHKLTPSDRCLNVMPLFHIHGLI 59
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+L G SVV P + + WD + KY+VT + PT+ + L++
Sbjct: 60 VSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKP-NPG 114
Query: 506 YSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGFM-ITPLPGAW 561
LR + S P+ P+ F V P+ + + TE + PLP
Sbjct: 115 KPPPRLRFIRSASAPLPPAVLDRLEKRFGV------PVLEAYGMTEAAHQIASNPLPPL- 167
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEI----EGE--------CSGYL----CIKSSWP-GA 604
+KPGS P GV+ I+D+ G + EGE +GYL + ++ G
Sbjct: 168 VRKPGSVGRP-AGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGW 226
Query: 605 FRTLYGDHERYETTYFKPFPGYYF-TG-------DGCSSGHRIGTAEVESALVSHPQCAE 656
FRT GD Y GY F TG G G +I EVE L+ HP AE
Sbjct: 227 FRT--GD-----LGYLDE-DGYLFLTGRIKELINRG---GEKISPREVEEVLLRHPAVAE 275
Query: 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716
A V GV E+ G+ + A V L S+ + L RK++ AF P KI + LPK
Sbjct: 276 AVVFGVPDELYGEEVAAAVVLRAD---SKVTIEELRDFARKRLAAFKVPKKILFVDALPK 332
Query: 717 TRSGKIMRRILRK 729
+GKI RR L +
Sbjct: 333 GATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 4e-37
Identities = 104/394 (26%), Positives = 154/394 (39%), Gaps = 58/394 (14%)
Query: 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424
I ++D + + +D L YT G+TG PKG + T +V
Sbjct: 103 AISFEDALASGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRN-LVANVQQIAAWV 161
Query: 425 DY--KPSDVYWCTADC-------GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
+ D + G + GA+ V+
Sbjct: 162 KDLREGEDRFLT---ALPLFHIFGLTVNMLL----GLRLGATNVLV----PNFRPINVLK 210
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
+ +Y+ TIF PTL +L+ + +Y SLR+ S G P+ F G
Sbjct: 211 EIKRYRFTIFPGVPTLYNALLN--HPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTG- 267
Query: 536 SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGY 594
P+ + + TET + T P +KPGS P G + IVD++G E+ GE G
Sbjct: 268 --APLVEGYGLTETSP-VTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGE-VGE 323
Query: 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD-GC------------------SS 635
L ++ P + G R E T G+ TGD G
Sbjct: 324 LVVRG--PQVMK---GYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVG 378
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-ELRKSLVLA 694
G + E+E L SHP EAAVVGV +G+ + AFV L EG +E EL
Sbjct: 379 GFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFC--- 435
Query: 695 VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
R+++ A+ P ++ + LPK+ GKI+RR LR
Sbjct: 436 -RERLAAYKVPRQVEFRDELPKSAVGKILRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-33
Identities = 101/364 (27%), Positives = 163/364 (44%), Gaps = 29/364 (7%)
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438
C+ A+D + +TSG+TG PKG +H + ++ P DV+ +
Sbjct: 139 CDKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPL 198
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G + P+ GAS V+ E A P + +++ TI +TAPT R+++
Sbjct: 199 AFTFGLGGLVLFPLRFGASAVLLEQAT--PP--LLLKAIQEHRATILFTAPTAYRAML-- 252
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
V + SLR S GE + W+ ++ G I D TE I+
Sbjct: 253 --IKVKAFDISSLRKCVSAGETLPAKVWQDWYERTG---LKIIDGIGATEMLHIFISA-- 305
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET- 617
KPG+ P G + IVD++G E+ +G L ++ P R L + ++
Sbjct: 306 NEENAKPGATGKPVPGYEARIVDDQGNEVPRGEAGRLAVRG--PTGCRYLDDERQQEYVR 363
Query: 618 --------TYFKPFPGY-YFTGDG----CSSGHRIGTAEVESALVSHPQCAEAAVVGVEH 664
+ + GY ++ S+G+ I EVE AL++HP AE AV+GV
Sbjct: 364 DGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPD 423
Query: 665 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724
E +GQ + A + L +G +E L + L V+ I + P +I++ LPKT++GKI R
Sbjct: 424 EERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQR 483
Query: 725 RILR 728
LR
Sbjct: 484 FRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 125/511 (24%), Positives = 200/511 (39%), Gaps = 71/511 (13%)
Query: 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+PM ++ I LA G V V FS+ +A R+ K V T + V RG +A+ L
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 324 KD-IVDAALDECA---KSGISVDVCLTYENQSAMTRENTKWQD--GRDIWWQDVVPKYPT 377
+V+AA + +G V V L ++ S W D G V +
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLS--------WCDFLGVAAAQGSVGGNEYS 112
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGV--LHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435
+ E +L++SG+TG+PK + H + + A+ D +P DV
Sbjct: 113 P---VYAPVESVTNILFSSGTTGEPKAIPWTHLSP---LRCASDGWAHMDIQPGDVVCWP 166
Query: 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495
+ GW+ G ++ Y LNGA++ ++ GAP G V VT+ P++V++
Sbjct: 167 TNLGWMMG-PWLLYSAFLNGATLALYGGAPLGRGFG---KFVQDAGVTVLGLVPSIVKAW 222
Query: 496 MRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI- 554
G + LRV S GE W +V G + P+ + TE I
Sbjct: 223 RHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYK-PVIEYCGGTELASGYIS 281
Query: 555 -TPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAF-RTLYG 610
T L PQ PG+ + G + V++++ GV + C G + + GA R L
Sbjct: 282 STLLQ---PQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNA 338
Query: 611 DHERYETTYFKPFP---------------------GYYFTGDGCSS-----GHRIGTAEV 644
DH++ Y+K P GY+ G + + E+
Sbjct: 339 DHDK---VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEI 395
Query: 645 ESALVSHPQC-AEAAVVGVEHEVKGQG---IYAFVTLVEGVPYS---EELRKSLVLAVRK 697
E A AE A VGV G I+ + + E L+K A++
Sbjct: 396 ERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQT 455
Query: 698 QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ ++ P LP+ S K++RR+LR
Sbjct: 456 NLNPLFKVSRVKIVPELPRNASNKLLRRVLR 486
|
Length = 499 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-32
Identities = 105/476 (22%), Positives = 168/476 (35%), Gaps = 117/476 (24%)
Query: 234 TYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
TY +L ++ +LA +L+ GV GD V + L EL +A+LA + GA + + +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
++ LA + D ++++T +A+ + L I +D
Sbjct: 61 AERLAFILEDAGARLLLTDSAL-------------ASRLAGLVLPVILLDPLEL------ 101
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
P P +D +++YTSGSTG+PKGV+ T
Sbjct: 102 ------------AALDDAPAPPPPD----APSGPDDLAYVIYTSGSTGRPKGVVVTHRS- 144
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEGAP 465
+V+ + P D + S +G +L GA++VV
Sbjct: 145 LVNLLAWLARRYGLDPDDR--------VLQFASLSFDASVEEIFGALLAGATLVVPPEDE 196
Query: 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525
D+ ++ ++ VT+ P+L+ L + SLR++ GE + P+
Sbjct: 197 ERDDAALLAALIAEHPVTVLNLTPSLLALLAAALPP-----ALASLRLVILGGEALTPAL 251
Query: 526 ---WRWFFNVVGDSRCPISDTWWQ----TE-TGGFMITPLPGAWPQKPGSATF--PFFGV 575
WR +R TE T T + + P
Sbjct: 252 VDRWRA---RGPGAR------LINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANT 302
Query: 576 QPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT--YFKPFPGY--- 626
+ ++D+ V + GE L I PG R G R E T F P P
Sbjct: 303 RLYVLDDDLRPVPVGVVGE----LYI--GGPGVAR---GYLNRPELTAERFVPDPFAGGD 353
Query: 627 ----YFTGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAV 659
Y TGD G G+RI E+E+AL+ HP EA V
Sbjct: 354 GARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 90/369 (24%), Positives = 140/369 (37%), Gaps = 48/369 (13%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
+ D + G+TG PK + T Y+ + + P VY H
Sbjct: 137 ELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC-GLDPGTVYLAVLP----AAH 191
Query: 445 SYVTYGP-----MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
++ P +L G +VV+ P ++ ++++ KVT P L+ +
Sbjct: 192 NFTLSSPGLLGALLAGGTVVL---HHP-PSPDVAFPLIEREKVTHTALVPALLNLWL--E 245
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
+ SLRV+ G P++P R +G CP+ + E G T L
Sbjct: 246 AAEWDQADLSSLRVIQVGGAPLSPELARRVEERLG---CPLQQVFGMAE-GLVNYTRLDD 301
Query: 560 AWPQKPGSATFPFFGVQPV-IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ P + IVD++G + G L + P R Y +
Sbjct: 302 PPDVIMRTQGRPISPADEIRIVDDQGEPVPPGEVGELLTRG--PYTIRGYYR-APEHNAR 358
Query: 619 YFKPFPGYYFTGD-------------G------CSSGHRIGTAEVESALVSHPQCAEAAV 659
F G+Y TGD G G +I E+E+ L+SHP A+AAV
Sbjct: 359 AFTD-DGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAV 417
Query: 660 VGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 718
VG+ EV G+ I AFV G + ELR L + + F PD++ LP T
Sbjct: 418 VGMPDEVLGERICAFVVPRGGAAPTLAELRAFL---REQGLAKFKLPDRLEVVDSLPLTP 474
Query: 719 SGKIMRRIL 727
GK+ ++ L
Sbjct: 475 VGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 5e-32
Identities = 168/663 (25%), Positives = 265/663 (39%), Gaps = 123/663 (18%)
Query: 147 EMYKRSVEDPAGFWADIASEFYWKEKWG----------QRVCSENLDVRKGNVKIEWFKG 196
E + SVE+P E YW + + + + G W G
Sbjct: 124 EFQRFSVENP---------EVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQ---WLPG 171
Query: 197 GITNICYNCLDRNIEAGLGDKVAIYW--EANDPGVDATLTYSQLLQQVCQLANYLKDIGV 254
+ N+ CL D +AI W E +D +T S+L QV ++AN L +G
Sbjct: 172 AVLNVAECCLTPKPSKTD-DSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGF 230
Query: 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAV 314
+KGDA+ I +PM + I LA G V + F+ +A R+ K K + T + +
Sbjct: 231 EKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVI 290
Query: 315 KRGPKAIHL-KDIVDAALDEC---AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQD 370
RG K+I L +V+A + G SV V L RE D+ W D
Sbjct: 291 VRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKL---------REG-------DMSWDD 334
Query: 371 VVPKY-PTKCEVEWVDAEDPL----FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-- 423
+ + + E+ E P+ +L++SG+TG+PK + T T + A
Sbjct: 335 FLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWT-------QLTPLRAAAD 387
Query: 424 ----FDYKPSDVY-WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD 478
D + D+ W T + GW+ G ++ Y +LNGA++ ++ G+P + V
Sbjct: 388 AWAHLDIRKGDIVCWPT-NLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAK---FVQ 442
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538
KVT+ T P++V++ + S+R GS GE + + W SR
Sbjct: 443 DAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRCFGSTGEASSVDDYLWLM-----SRA 495
Query: 539 ---PISDTWWQTETGGFMITPLPGAWPQKPGSATF--PFFGVQPVIVDEKGVEI--EGEC 591
PI + TE GG +T G+ Q A F P G + I+D+ G + C
Sbjct: 496 GYKPIIEYCGGTELGGGFVT---GSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPC 552
Query: 592 SGYLCIKSSWPGAFRTLY-GDHERYETTYFKPFP------------------GYYFTGDG 632
+G L + GA TL DH + YFK P G Y+ G
Sbjct: 553 TGELALFPLMFGASSTLLNADHYK---VYFKGMPVFNGKILRRHGDIFERTSGGYYRAHG 609
Query: 633 CSS------GHRIGTAEVESAL-VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS- 684
+ G ++ + E+E + E A +GV G +++ P S
Sbjct: 610 RADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN 669
Query: 685 ---EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDT 741
EL+K A++K++ + P P+T S K+MRR+LR+ QL +
Sbjct: 670 PDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQ----QLAQELSR 725
Query: 742 STL 744
S L
Sbjct: 726 SKL 728
|
Length = 728 |
| >gnl|CDD|221322 pfam11930, DUF3448, Domain of unknown function (DUF3448) | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-31
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+ Y E+Y+ S+EDP GFWA+ A E W + W +V + I+WF GG N
Sbjct: 3 DMEAYQELYEESIEDPEGFWAEQAEELDWFKPW-DKVLDWS-----NAPFIKWFVGGKLN 56
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEAND 226
YNCLDR++E G GDKVAI WE ++
Sbjct: 57 ASYNCLDRHLETGRGDKVAIIWEGDE 82
|
This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 80 amino acids in length. This domain is found associated with pfam00501. This domain has a conserved DRH sequence motif. This domain has two completely conserved residues (N and A) that may be functionally important. Length = 82 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 7e-31
Identities = 138/557 (24%), Positives = 209/557 (37%), Gaps = 90/557 (16%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAM 274
DK AI + ++Y +LL++ +LA YL+ GV+KGD V++Y+ + IA
Sbjct: 25 DKTAIVF------YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY 78
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS----NAVKRGPKAIHLKDIVDA- 329
A R AV V + LA + D +V I V + L+ ++ A
Sbjct: 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQ 138
Query: 330 ---ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
L A+ I+V L E G + W++ +
Sbjct: 139 YSDYLP--AEPEIAVPAWLRAEPPLQALAP------GGVVAWKEALAAGLAPPPHT-AGP 189
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+D L YTSG+TG PKG +HT M A + P V +TG +
Sbjct: 190 DDLAVLPYTSGTTGVPKGCMHTHRTVM-ANAVGSVLWSNSTPESVVLAVLPLFHVTGMVH 248
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWD------IVDKYKVTIFYTAPTLVRSLMRDGN 500
P+ GA+VV+ WD ++++Y+VT + PT+V +
Sbjct: 249 SMNAPIYAGATVVLMP----------RWDREAAARLIERYRVTHWTNIPTMVVDFLASPG 298
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ SLR +G G + + + G + + TET + P
Sbjct: 299 --LAERDLSSLRYIGGGGAAMPEAVAERLKELTG---LDYVEGYGLTETMAQTHSNPPDR 353
Query: 561 WPQKPGSATFPFFGVQPVIVD-----EKGVEIEGE--CSGYLCIKSSW--PGA------- 604
K P FGV ++D E GE G K W P A
Sbjct: 354 --PKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIE 411
Query: 605 ------FRTLYGDHERYETTYFKPFPGYYFTGDGC-----SSGHRIGTAEVESALVSHPQ 653
FRT GD R + GY+F D +SG ++ AEVE+ L HP
Sbjct: 412 IDGKRFFRT--GDLGRMDEE------GYFFITDRLKRMINASGFKVWPAEVENLLYKHPA 463
Query: 654 CAEAAVVGVEHEVKGQGIYAFVTL---VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHW 710
EA V+ +G+ + A V L G EE+ R+ + A+ P + +
Sbjct: 464 IQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIA----WAREHMAAYKYPRIVEF 519
Query: 711 APGLPKTRSGKIMRRIL 727
LPK+ SGKI+ R L
Sbjct: 520 VDSLPKSGSGKILWRQL 536
|
Length = 546 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-30
Identities = 129/564 (22%), Positives = 209/564 (37%), Gaps = 117/564 (20%)
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
GDK A + D LTY++L +V + A L +G+ KGD V I+ P IA
Sbjct: 18 FGDKEAYVFG------DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIA 71
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN----AVKRGPKAI-HLKDIVD 328
L + GAV + +++D A + K + + L+ +V
Sbjct: 72 ALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVV- 130
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV-PKYPTKCEVEWVDAE 387
+C T E+ + T + D + P + E VD +
Sbjct: 131 --------------ICETEEDDPHTEKMKT---------FTDFLAAGDPAERAPE-VDPD 166
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC----------TAD 437
D +L+TSG+TG+PKG + T + + A +Y D Y A
Sbjct: 167 DVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRYLAANPFFHVFGYKA- 224
Query: 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
G P++ GA+++ P + D + +++ ++T+ PT+ SL++
Sbjct: 225 -GVNA--------PLMRGATILP---LPVF-DPDEVFRLIETERITVLPGPPTMYNSLLQ 271
Query: 498 --DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGF 552
D + SLR+ + + + F V + + +E G
Sbjct: 272 HPDRSAE----DLSSLRLAVTGAASMPVALLERFESELGVD-----IVLTGYGLSEASGV 322
Query: 553 M-ITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
L G+ GV+ IV+E G E+ G L ++ P + Y D
Sbjct: 323 TTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRG--PNVMKGYYDD 380
Query: 612 HERYETTYFKPFPGYYFTGDGCSSGHRIGT--------------------------AEVE 645
E T G+ TGD +G AEVE
Sbjct: 381 PE--ATAAAIDADGWLHTGD-------LGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVE 431
Query: 646 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAP 705
L HP AEAAV+GV E G+ A+V L G +EE L+ R+ + + P
Sbjct: 432 EVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEE---ELIAYCREHLAKYKVP 488
Query: 706 DKIHWAPGLPKTRSGKIMRRILRK 729
I + LPK +GK+++R LR+
Sbjct: 489 RSIEFLDELPKNATGKVLKRALRE 512
|
Length = 513 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-30
Identities = 136/560 (24%), Positives = 209/560 (37%), Gaps = 135/560 (24%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D +A+ + D +LTY++L ++ +LA L+ GV GD V + L EL +A+L
Sbjct: 2 DAIALVYG------DRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRI--M--DCKPKVVITSNAVKRGPKAIHLKDIVDAAL 331
A + GA + A+R+ M D +V++T ++ +A L ++
Sbjct: 56 AILKAGAA----YVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILE-- 109
Query: 332 DECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF 391
+E VDA+D +
Sbjct: 110 EELDAEDAGPPAPA--------------------------------------VDADDLAY 131
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW------ITGHS 445
++YTSGSTG+PKGV G +V Y P D + + + I
Sbjct: 132 VMYTSGSTGRPKGVAVPHRG-VVRLVRNTNYI-ALDPDDRFLQLSPLSFDASTFEI---- 185
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI-FYTAPTLVRSLMRDGNEYVT 504
+G +LNG +V+ + T D R ++ + VT+ + TA L L+ + E +
Sbjct: 186 ---WGALLNGGRLVLIDKE-TLLDPDRLARLIAEQGVTVLWLTAA-LFNQLVDEDPEAL- 239
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWF---------FNVVGDSRCPISDTWWQTETGGFMIT 555
LR L G+ ++P+ R N G P +T T + +IT
Sbjct: 240 ----AGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYG----PTENT---TFSTCHVIT 288
Query: 556 PLPGAWPQKP-GSATFPFFGVQPVIVDEKG--VEI--EGECSGYLCIKSSWPGAFRTLYG 610
L A P G P I+DE+G V I GE L + G
Sbjct: 289 RLDEAADSIPIG---RPIPNTTVYILDEEGQPVPIGVPGE----LYV--GGDGLALGYLN 339
Query: 611 DHERYETTYFK-PF-PG--YYFTGD-------GCSS------------GHRIGTAEVESA 647
E + PF PG Y TGD G G RI E+E A
Sbjct: 340 RPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQA 399
Query: 648 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 707
L+ HP EAAV+ E + + A+V + + ELR L +++ A+ P
Sbjct: 400 LLQHPGVREAAVLVREDAAGDKRLVAYVVARGALD-AAELRAHL----AERLPAYMVPAA 454
Query: 708 IHWAPGLPKTRSGKIMRRIL 727
LP T +GK+ RR L
Sbjct: 455 FVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 6e-30
Identities = 94/366 (25%), Positives = 143/366 (39%), Gaps = 54/366 (14%)
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-----FDYKPSDVYWCTADCGWITGHSY 446
LLYTSG+TG+PKGV+HT H + P DV + ITG Y
Sbjct: 98 LLYTSGTTGEPKGVMHT------HNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLY 151
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
P+L GA+VV+ + + D R+ +++ ++ VT A + L+ +
Sbjct: 152 GLELPLLLGATVVLQD---RW-DPARALELIREHGVTFTMGATPFLADLLAAADA--AGP 205
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT-PLPGAWPQK- 564
SLRV G P+ R +G + TE ++T P K
Sbjct: 206 DLPSLRVFLCGGAPVPRELARRAAEALGAKVVRA---YGMTEVP--LVTVGTPDDPDDKR 260
Query: 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
+ P GV+ IVD+ G ++ G L ++ P F + E
Sbjct: 261 AATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRG--PQLFLGYLDPPDNTEAFTDD--- 315
Query: 625 GYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHE 665
G++ TGD G I E+E L+ HP AE AVV + E
Sbjct: 316 GWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDE 375
Query: 666 VKGQGIYAFVTLVEGVPYS-EELRKSLVLA-VRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723
G+ + A V G + EL + L + KQ P+++ LP+T SGK+
Sbjct: 376 RLGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQK----WPERLEVVDALPRTPSGKVQ 431
Query: 724 RRILRK 729
+ LR+
Sbjct: 432 KFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-29
Identities = 123/529 (23%), Positives = 204/529 (38%), Gaps = 70/529 (13%)
Query: 227 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 286
+TY +L ++ +LA+ + +G+K+GD V I++ + A R G ++
Sbjct: 19 ASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTC 78
Query: 287 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346
V + + A + D + +ITS A K D+ A L +C V L
Sbjct: 79 VNSHLTPAEAAYIVDDSGARALITSAA-----KL----DVARALLKQCPG----VRHRLV 125
Query: 347 YENQSAMTRENTKWQDGRDIWWQDVV---PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 403
+ + + + + V P P E D +LY+SG+TG+PK
Sbjct: 126 LDGDGELEG----FVG-----YAEAVAGLPATPIADESLGTD------MLYSSGTTGRPK 170
Query: 404 GVLHTTGGYMVHTATT----FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459
G+ T + + ++ VY A V L G +V+
Sbjct: 171 GIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRL-GGTVI 229
Query: 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519
V E + D+ + ++++Y VT PT+ +++ E +Y SL V
Sbjct: 230 VME----HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAA 285
Query: 520 PINPSAWRWFFNVVGDSRCPISDTWW-QTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P P + G PI ++ TE GF W PG+ FG
Sbjct: 286 PCPPQVKEQMIDWWG----PIIHEYYAATEGLGFTACD-SEEWLAHPGTVGRAMFGD-LH 339
Query: 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGY-------YFTGD 631
I+D+ G E+ G + + P F L + E + P + Y D
Sbjct: 340 ILDDDGAELPPGEPGTIWFEGGRP--FEYLNDPAKTAEARH--PDGTWSTVGDIGYVDED 395
Query: 632 G------------CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 679
G S G I E E+ L++HP+ A+AAV GV +E G+ + A V V+
Sbjct: 396 GYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVD 455
Query: 680 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
GV L L+ R+++ P I + LP+ +GK+ +R+LR
Sbjct: 456 GVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLR 504
|
Length = 511 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 6e-29
Identities = 134/540 (24%), Positives = 203/540 (37%), Gaps = 86/540 (15%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D TLTY+ L ++V LA+ L+ +G+ +G+ V IYL +E AM A G V +
Sbjct: 23 DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A + DC ++++TS+ D++ AL C + V
Sbjct: 83 LLKAEQVAHILADCNVRLLVTSSE---------RLDLLHPALPGCHDLRTLIIV-----G 128
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL--H 407
A E W ++ +D D +LYTSGSTG+PKGV+ H
Sbjct: 129 DPAHASE--GHPGEEPASWPKLLALGDADPPHPVID-SDMAAILYTSGSTGRPKGVVLSH 185
Query: 408 TTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
+V A + + +P D + G + +T GA+VV+ + Y
Sbjct: 186 RN---LVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTA-FYVGATVVLHD----Y 237
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMR-DGNEYVTRYSRKSLRVLGSVG---EPINP 523
++K+ +T P L L + D E SLR L + G
Sbjct: 238 LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAP----SLRYLTNSGGAMPRATL 293
Query: 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGS--ATFPFFGVQPVIV 580
S R F + + TE F T L P ++P S P V ++
Sbjct: 294 SRLRSFL-----PNARLFLMYGLTE--AFRSTYLPPEEVDRRPDSIGKAIPNAEVL--VL 344
Query: 581 DEKGVEIEGECSGYLCIKSSWPGAFRTL--YGDHERYETTYFKPFPGY------------ 626
E G E G L + GA + + D E+ F+P P +
Sbjct: 345 REDGSECAPGEEGELVHR----GALVAMGYWNDPEK-TAERFRPLPPFPGELHLPELAVW 399
Query: 627 -------------YFTG--DGC--SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669
YF G D +SG+R+ EVE + AEA GV GQ
Sbjct: 400 SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQ 459
Query: 670 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
I VT G E R +L+ R ++ + P IH LP+ +GKI R+ L K
Sbjct: 460 AIVLVVTPPGGE---ELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-28
Identities = 129/549 (23%), Positives = 198/549 (36%), Gaps = 116/549 (21%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+TY +L + +LA+ L+ +G+++GD V I L E A R G ++ +
Sbjct: 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINW 68
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A + D KV+I S A L D E V + L
Sbjct: 69 HLTAAEIAYIVDDSGAKVLIVSAA---------LADTAAELAAEL---PAGVPLLLVVAG 116
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL--- 406
R + + P P E D +LY+SG+TG+PKG+
Sbjct: 117 PVPGFRSYEEALAAQ--------PDTPIADETAGAD------MLYSSGTTGRPKGIKRPL 162
Query: 407 -----HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT-YGPMLN--GASV 458
G M + P VY A H+ +G G +V
Sbjct: 163 PGLDPDEAPGMM---LALLGFGMYGGPDSVYLSPAP----LYHTAPLRFGMSALALGGTV 215
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
VV E D+ + ++++Y+VT PT+ +++ E RY SLRV
Sbjct: 216 VVMEKF----DAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAA 271
Query: 519 EPINPSAWRWFFNVVGDSRCPIS------DTWW---------QTETGGF-MITPLPGAWP 562
P CP+ D WW +E GG +IT W
Sbjct: 272 AP-----------------CPVEVKRAMID-WWGPIIHEYYASSEGGGVTVIT--SEDWL 311
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
PGS G I+DE G E+ G + G + D E+
Sbjct: 312 AHPGSVGKAVLGEVR-ILDEDGNELPPGEIGT------VYFEMDGYPFEYHNDPEKTAAA 364
Query: 619 YFKPFPGYYFTGD-GC------------------SSGHRIGTAEVESALVSHPQCAEAAV 659
G+ GD G S G I E+E+ LV+HP+ A+ AV
Sbjct: 365 RNP--HGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAV 422
Query: 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719
GV E G+ + A V +G + L L+ +R ++ + P I + LP+T +
Sbjct: 423 FGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPT 482
Query: 720 GKIMRRILR 728
GK+ +R LR
Sbjct: 483 GKLYKRRLR 491
|
Length = 502 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-28
Identities = 93/380 (24%), Positives = 143/380 (37%), Gaps = 69/380 (18%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA----DCGW-- 440
+D ++YTSGSTG+PKGV+ + + +Y + D D G
Sbjct: 2 DDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQY-LELTEDDRILAVLPFSFDYGLSQ 60
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD---KYKVTIFYTAPTLVRSLMR 497
+ V G ++V+ E +P D++ K ++T F PT L+R
Sbjct: 61 LLTAFRV-------GGTLVL-ESRFAFP-----RDVLKHLAKERITGFAGVPTTWAQLLR 107
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
+ SLR L + G + D++ + + TE F T L
Sbjct: 108 LDPLAREDFP--SLRYLTNAGGALPAKTILQLRRAFPDAK--LFSMYGLTEA--FRSTYL 161
Query: 558 PGAWP----QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL--YGD 611
P P ++P S V+ +VDE G G L + GA + D
Sbjct: 162 P---PEELDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHR----GANVMKGYWND 214
Query: 612 HERYETTYFKPFP----GYYFTGDGC-------------------SSGHRIGTAEVESAL 648
E +P P +TGD + G+R+ E+E +
Sbjct: 215 PEATAER-LRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVI 273
Query: 649 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKI 708
+HP AEAAV+GV + GQ I A V +G K L+ RK + + P +I
Sbjct: 274 CAHPLVAEAAVIGVPDPLLGQAIVAVVVSADG---ESLDEKELLKHCRKHLPNYMVPAEI 330
Query: 709 HWAPGLPKTRSGKIMRRILR 728
+ LPK +GK+ R LR
Sbjct: 331 VFVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 94/384 (24%), Positives = 148/384 (38%), Gaps = 80/384 (20%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+D + YTSG+TG PKG +HT ++ TA P V + G
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRT-VLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQG 142
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWD------IVDKYKVTIFYTAPTLVRSLMRDGN 500
P+ GA++V+ R WD +++Y+VT + T+V L+
Sbjct: 143 SMNAPIYTGATLVLL---------TR-WDREAAARAIERYRVTHWTNIVTMVVDLLAHPR 192
Query: 501 EYVTRYSRKSLRVLGSVGEPINPS-AWRWF------FNVVGDSRCPISDTWWQTETGGFM 553
Y SL+V+G G + P+ A R + + + TET
Sbjct: 193 --FADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYE----------EGYGLTET---- 236
Query: 554 ITPL---PGAWPQKPGSATFPFFGVQPVIVD-----EKGVEIEGECSGYLCIKSSWPGAF 605
T P P KP P FG ++D E EGE + ++ P F
Sbjct: 237 HTCTHFNPPDRP-KPQCLGIPVFGTDARVIDPETGEELPPGEEGE----IVVRG--PQVF 289
Query: 606 RTLYG-DHERYETTYFKPFPGYYFTGD-------GC------------SSGHRIGTAEVE 645
+ + E+ ++ TGD G SG+++ AEVE
Sbjct: 290 KGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVE 349
Query: 646 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRKQIGAFA 703
+ L HP E V+G +G+ + AFV L +EE ++ R+++ A+
Sbjct: 350 ALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEE---DIIEWCRERMAAYK 406
Query: 704 APDKIHWAPGLPKTRSGKIMRRIL 727
P I + LPKT SGK++ R+L
Sbjct: 407 YPRIIEFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 7e-28
Identities = 87/384 (22%), Positives = 153/384 (39%), Gaps = 72/384 (18%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
D +D +++YTSGSTG+PKGV+ G +V+ + + D A +
Sbjct: 90 TDPDDLAYVIYTSGSTGRPKGVMVEHRG-LVNLLAWLQERYGLTAGDRVLQFASFSFDAS 148
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ + P+L+GA++V+ D +++ ++++T+ + P+L+R+L+ + +
Sbjct: 149 V-WEIFPPLLSGATLVLAPPE-VLRDPEALAELLREHRITVLHLVPSLLRALL----DAL 202
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR---------CPISDTWWQTETGGFMI 554
+ SLR++ GE + R + + +R + T+ + +
Sbjct: 203 EPAALPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDG 262
Query: 555 TPLP-GAWPQKPGSATFPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLY 609
+P G P + ++DE V + GE L I G R
Sbjct: 263 GSVPIGR----------PIANTRVYVLDEDLRPVPVGVPGE----LYI--GGAGVAR--- 303
Query: 610 GDHERYETTYFK----PFPG----YYFTGD-GCS------------------SGHRIGTA 642
G R E T + PF G Y TGD G+RI
Sbjct: 304 GYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELG 363
Query: 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGA 701
E+E+AL++HP EA VV E + + A+V G + ELR L +++
Sbjct: 364 EIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFL----AERLPD 419
Query: 702 FAAPDKIHWAPGLPKTRSGKIMRR 725
+ P LP T +GK+ R+
Sbjct: 420 YMVPSAFVVLDALPLTPNGKVDRK 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 96/385 (24%), Positives = 158/385 (41%), Gaps = 55/385 (14%)
Query: 373 PKYPTKCEVEWV--DAE-----DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425
P YP E+ ++ D++ DP ++YTSG+TG+PKGV+ T G + A A+
Sbjct: 68 PSYPAA-ELAYILSDSQPSLLVDPALIIYTSGTTGRPKGVVLTHGN-LAANARALVEAWR 125
Query: 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIF 485
+ SDV + G + P+ GASV P + D + ++T+F
Sbjct: 126 WTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFL---PRF-DPQERDALRLLPRITVF 181
Query: 486 YTAPTL-VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544
PT+ R L + + ++LR+ S + + G + + +
Sbjct: 182 MGVPTIYTRLLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGH---TLLERY 238
Query: 545 WQTETGGFMIT--PLPGAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCIKSSW 601
TETG M PL G ++PG+ P GV+ IVDE G E + G + ++
Sbjct: 239 GMTETG--MALSNPLDG--ERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG-- 292
Query: 602 PGAFRTLYGDHERYETTYFKPFP--GYYFTGD-------GC-------------SSGHRI 639
P F + E + F G++ TGD G S G+++
Sbjct: 293 PNVFSEYWNKPEATA----EAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKV 348
Query: 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 699
E+E AL+ HP AE AV+GV G+ + A V G + L R+++
Sbjct: 349 SALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAE---LRAWAREKL 405
Query: 700 GAFAAPDKIHWAPGLPKTRSGKIMR 724
+ P ++ LP+ GK+ +
Sbjct: 406 APYKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 7e-27
Identities = 135/529 (25%), Positives = 202/529 (38%), Gaps = 93/529 (17%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
TLT+ +L ++ LA L+ + + + V I A+LA RIGA ++ F
Sbjct: 68 TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSF 127
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+ +LA+ + VI VD AL +C ++ V
Sbjct: 128 AGPALAEVVTREGVDTVIYDE---------EFSATVDRALADCPQATRIVA--------- 169
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT-TG 410
W D +V+ E + + LL TSG+TG PKG + G
Sbjct: 170 --------WTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILL-TSGTTGTPKGARRSGPG 220
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN--GASVVVFEGAPTYP 468
G T K D P W V PM + G S +V +
Sbjct: 221 GIG-----TLKAILDRTP-----------WRAEEPTVIVAPMFHAWGFSQLVLAASLACT 264
Query: 469 -------DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
D + D++D+++ T P + +M E RYS +SLR + G +
Sbjct: 265 IVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRM 324
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI-TPLPGAWPQKPGSATFPFFGVQPVIV 580
P F + GD I + + TE G MI T P P +A P G + I+
Sbjct: 325 RPDVVIAFMDQFGDV---IYNNYNATEAG--MIATATPADLRAAPDTAGRPAEGTEIRIL 379
Query: 581 DEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF-PGYYFTGD------- 631
D+ E+ GE G + +++ T + + Y + K F G+ +GD
Sbjct: 380 DQDFREVPTGEV-GTIFVRND------TQF---DGYTSGSTKDFHDGFMASGDVGYLDEN 429
Query: 632 ------G------CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 679
G S G + EVE L +HP AEAAV+GV+ E GQ + AFV L
Sbjct: 430 GRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKP 489
Query: 680 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
G + E K VR + + P I LP+ +GKI+RR L+
Sbjct: 490 GASATPETLKQ---HVRDNLANYKVPRDIVVLDELPRGATGKILRRELQ 535
|
Length = 537 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 8e-27
Identities = 105/421 (24%), Positives = 161/421 (38%), Gaps = 121/421 (28%)
Query: 382 EWVDAEDPLF------------LLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDY 426
E ++ E P + L YTSG+TG PKGV+++ ++HT A +
Sbjct: 145 ELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPD--SLGL 202
Query: 427 KPSDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
SD W + G V G L+ AS++ D
Sbjct: 203 SESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLL---------------D 247
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYV--TRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
++++ KVT+ PT+ L+ Y+ SLR + VV
Sbjct: 248 LIEEEKVTVSAGVPTIWLGLL----NYLEANGKDLSSLRRV-----------------VV 286
Query: 534 GDSRCPIS--DTWWQ-----------TETGGF-MITPLPGAWPQKPGSATF--------P 571
G S P S + + TET ++ L P P
Sbjct: 287 GGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRP 346
Query: 572 FFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF- 628
GV+ IVD++G E+ +G+ G L ++ W + Y D + +F
Sbjct: 347 VPGVELRIVDDEGNELPWDGKTVGELVVRGPW--VTGSYYKD----PEKTEELTRDGWFR 400
Query: 629 TGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669
TGD G S G I + E+E+AL++HP AEAAVVGV HE G+
Sbjct: 401 TGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGE 460
Query: 670 GIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
A V L G + EEL + L K++ + PD++ + +PKT GK ++ LR
Sbjct: 461 RPLAVVVLKPGAKVTEEELLEHL----AKKVAKWWLPDRVVFVDEIPKTSVGKFDKKALR 516
Query: 729 K 729
+
Sbjct: 517 E 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-26
Identities = 131/565 (23%), Positives = 201/565 (35%), Gaps = 109/565 (19%)
Query: 210 IEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME 269
+ + D+VA+ D LTY++L ++ +LA+YL G+ GD V IY +E
Sbjct: 12 VADAVPDRVALVCG------DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIE 65
Query: 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI--------TSNAVKRGPKAI 321
AML + AV V + D L + D ++ + + R PK
Sbjct: 66 YVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLR 125
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
L + D + ++ + + L + R D + P
Sbjct: 126 TLVVVEDGSGNDLLPGAVDYEDALA---AGSPER--------------DFGERSP----- 163
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGG-YMVHTATTFKYAFDYKPSDVYWCTADCGW 440
D L+LLYT G+TG PKGV+ + V + D
Sbjct: 164 ------DDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEP-IEDEEELAKRAAA 216
Query: 441 ITGHSYVTYGPMLNGASV------------VVFEGAPTYPDSGRSWDIVDKYKVT-IFYT 487
G P+++GA VV + D+ W +++ KV I
Sbjct: 217 GPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRF-DADEVWRTIEREKVNVITIV 275
Query: 488 ----APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS---AW-RWFFNVVGDSRCP 539
A L+ +L G Y SL + S G +PS A NVV
Sbjct: 276 GDAMARPLLDALEARG-----PYDLSSLFAIASGGALFSPSVKEALLELLPNVV------ 324
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCI 597
++D+ +ETG F + G F G + V++DE G VE G++
Sbjct: 325 LTDSIGSSETG-FGGSGTVAKGAVHTGGPRFTI-GPRTVVLDEDGNPVEPGSGEIGWIAR 382
Query: 598 KSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGC-------------------SSG 636
+ P + Y D E+ T F G Y GD + G
Sbjct: 383 RGHIPLGY---YKDPEKTAET-FPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGG 438
Query: 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVR 696
++ EVE AL +HP A+A VVGV E GQ + A V L EG L R
Sbjct: 439 EKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLA---ELRAHCR 495
Query: 697 KQIGAFAAPDKIHWAPGLPKTRSGK 721
+ + P I + + ++ +GK
Sbjct: 496 SSLAGYKVPRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-26
Identities = 141/555 (25%), Positives = 205/555 (36%), Gaps = 95/555 (17%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-- 289
T TY++LL V + AN L +GV GD V LP L E A+ G +
Sbjct: 58 TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG----GEAAGIANPIN 113
Query: 290 -GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI---VDAALDECA--KSGISVDV 343
+ +A+ + KV++T + P DI V L ++ + VD+
Sbjct: 114 PLLEPEQIAELLRAAGAKVLVT---LGPFPGT----DIWQKVAEVLAALPELRTVVEVDL 166
Query: 344 --CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV--EWVDAEDPLFLLYTSGST 399
L + A+ K R + + + + P + +D +T G+T
Sbjct: 167 ARYLPGPKRLAVPLIRRK-AHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTT 225
Query: 400 GKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT-YGPMLNGASV 458
G PK HT G V A P D +C + VT P+ GA V
Sbjct: 226 GMPKLAQHTHGN-EVANAWLGALLLGLGPGDTVFCGLPLFHVNA-LLVTGLAPLARGAHV 283
Query: 459 VVFEGAPT---YPDSG---RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
V+ T Y G W IV++Y++ PT+ +L++ V + SLR
Sbjct: 284 VL----ATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQ---VPVDGHDISSLR 336
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKPGSA--T 569
P+ +R F G I + + TE T + P G ++ GS
Sbjct: 337 YALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVSSVNPPDG--ERRIGSVGLR 391
Query: 570 FPFFGVQPVIVDEKGVEIEGECS----GYLCIKSSWPGAFRT-LYGDHER---YETTYFK 621
P+ V+ VI+D+ G +C+ G LCI P F L H + E +
Sbjct: 392 LPYQRVRVVILDDAG-RYLRDCAVDEVGVLCIAG--PNVFSGYLEAAHNKGLWLEDGWLN 448
Query: 622 PFPGYYFTGD----------------------GCSSGHRIGTAEVESALVSHPQCAEAAV 659
TGD G GH I A +E AL+ HP A AA
Sbjct: 449 -------TGDLGRIDADGYFWLTGRAKDLIIRG---GHNIDPAAIEEALLRHPAVALAAA 498
Query: 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIHWAPGLPKTR 718
VG G+ A+V L G +E L+ R I AA P + LPKT
Sbjct: 499 VGRPDAHAGELPVAYVQLKPGASATEA---ELLAFARDHIAERAAVPKHVRILDALPKTA 555
Query: 719 SGKIMRRILRKIASR 733
GKI + LR+ A R
Sbjct: 556 VGKIFKPALRRDAIR 570
|
Length = 632 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 7e-26
Identities = 132/577 (22%), Positives = 210/577 (36%), Gaps = 143/577 (24%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
G K A+ +E + GV +Y +L +++ + AN +G++KGD V ++L E
Sbjct: 21 GHKTALIFE-SSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCW 79
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A+IGA+ + A + A + + + +++TS + I +D
Sbjct: 80 FGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED--------- 130
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L +TR DG + Q + T C + +D +L+
Sbjct: 131 -------ATPL---RHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILF 180
Query: 395 TSGSTGKPKGVLHTT-----GGYMVHTATTFKYAFDYKPSDVYW-----------CTADC 438
TSG+T +PKGV+ T GY + DVY CTA
Sbjct: 181 TSGTTSRPKGVVITHYNLRFAGYYSAWQCALRD------DDVYLTVMPAFHIDCQCTAAM 234
Query: 439 GWITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRS-WDIVDKYKVTIFYTAPTLVRSLM 496
+ GA+ V+ E Y S R+ W V KY+ TI P ++R+LM
Sbjct: 235 ------------AAFSAGATFVLLE---KY--SARAFWGQVCKYRATITECIPMMIRTLM 277
Query: 497 -------------RD--------GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
R+ E R +R+L S G
Sbjct: 278 VQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGVRLLTSYG----------------- 320
Query: 536 SRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
TET +I PG WP S P F + I D+ +
Sbjct: 321 ----------MTETIVGIIGDRPGDKRRWP----SIGRPGFCYEAEIRDDHNRPLPAGEI 366
Query: 593 GYLCIKSSWPGA--FRTLYGDHERYETTYFKPFPGYYFTGD---------------GCS- 634
G +CIK PG F+ Y D + + G+ TGD C+
Sbjct: 367 GEICIKGV-PGKTIFKEYYLDPKATAKV-LEA-DGWLHTGDTGYVDEEGFFYFVDRRCNM 423
Query: 635 ---SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSL 691
G + E+E+ + +HP+ + VVG++ ++ + I AFV L EG SEE
Sbjct: 424 IKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEE---EF 480
Query: 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ + F P + LP+ SGKI+++ L+
Sbjct: 481 FAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-25
Identities = 94/492 (19%), Positives = 160/492 (32%), Gaps = 118/492 (23%)
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
+ L A D VA+ LTY++L + +LA L +GV G+ V
Sbjct: 228 TIHLLFEEQAATTPDAVALVRG------GQQLTYAELDARANRLARLLISLGVGPGETVA 281
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
I +EL +A+LA + GA + + + ++ LA + D +P +++T
Sbjct: 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT----------- 330
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
A L + + D D P
Sbjct: 331 ------QAHLRVDDVGLPGLAL------------------DDALSEIPDTDPIP------ 360
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGG---YMVHTATTFK------------YAFDY 426
+ + + +++YTSGSTG+PKGV + F +FD
Sbjct: 361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDA 420
Query: 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
+++ +L GA +V+ D ++++ +T+
Sbjct: 421 SVFEIFG-----------------ALLEGARLVLAPALLQ-VDPAALLELLEAQGITVLL 462
Query: 487 TAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546
P L+R L+ + LR L S GE + + + + +R + + +
Sbjct: 463 LVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLL-NLYGP 521
Query: 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPV------IVDEKGVEIEGECSGYLCIKSS 600
TE T ++P + G PV I+D+ + G L I
Sbjct: 522 TEA-----TLDAPSFPISAELESRVPIGR-PVANTQLYILDQGLRPLPLGVPGELYIAG- 574
Query: 601 WPGAFRTLYGDHERYETTYFKPFP-GYYFTGD-------GC------------SSGHRIG 640
G G R + T + Y TGD G G RI
Sbjct: 575 -LGLAL---GYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIE 630
Query: 641 TAEVESALVSHP 652
E+E+AL P
Sbjct: 631 LGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-24
Identities = 94/385 (24%), Positives = 140/385 (36%), Gaps = 90/385 (23%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
D + P +++TSGSTGKPK V+HT G ++ A P D + +
Sbjct: 74 PDLDRPATIIFTSGSTGKPKAVVHTWGNHLAS-ARGSAENLGLTPDDNWLLSL------- 125
Query: 444 HSYVTYGPM-------------LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
P+ L G ++V+ P D+ + ++ + VT PT
Sbjct: 126 -------PLFHVSGLAIVMRSLLAGGALVL----PDKFDAEAIAEALENHGVTHISLVPT 174
Query: 491 LVRSLMRDGNEYVTRYSRKSLRV--LGSVGEPINPSAWRWFFNVVGDSRC-----PISDT 543
++ L+ SLR LG G PI PS + P+ T
Sbjct: 175 QLQRLLESLGAR----WLSSLRAVLLG--GAPIPPSLLE---------QARQRGIPLYPT 219
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPG 603
+ TET + T P + K GS P G + + I G + ++ P
Sbjct: 220 YGMTETASQVATLKPDDFLAKLGSVGKPLPGRE--------LRIVNPQDGEILVRG--PS 269
Query: 604 AFRTLYGDHERYETTYFKPFPGYYFTGD-------------GCSS------GHRIGTAEV 644
F G++ TGD G G I E+
Sbjct: 270 LFLGYLPQGGLTPPL---DEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEI 326
Query: 645 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA 704
E+ L+ HP EAAVVGV + GQ AFV + EEL+ L ++ +
Sbjct: 327 EAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPVSVEELQAFL----ADKLAKYKR 382
Query: 705 PDKIHWAPGLPKTRSGKIMRRILRK 729
P + + P LP+ SGKI R LR+
Sbjct: 383 PKRWYPLPELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 124/544 (22%), Positives = 205/544 (37%), Gaps = 67/544 (12%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK+A+ ++ G A+ TYS L +LAN+L G++ GD V LP E I L
Sbjct: 38 DKIAV---VDNHG--ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYL 92
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
AC ++GAV + + L + C+ K+ P VD L
Sbjct: 93 ACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFF-------APTLFKQTRPVDLIL-PLQ 144
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + + + T + Q ++ Y ++ +L+T
Sbjct: 145 NQLPQLQQIVGVDKLAPATSSLSLSQ---------IIADYEPLTTAITTHGDELAAVLFT 195
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SG+ G PKGV+ T ++ + + + DV+ A G TG + P L G
Sbjct: 196 SGTEGLPKGVMLTHNN-ILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
A V+ + PD+ ++++ + T A + L+ + S +LR
Sbjct: 255 ARSVLLD--IFTPDA--CLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLS--ALRFFL 308
Query: 516 SVGEPINPS-----AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF 570
G I P + G + + TE+ + L + + +
Sbjct: 309 CGGTTI-PKKVARECQQR-----GIKLLSV---YGSTESSPHAVVNLDDPLSRFMHTDGY 359
Query: 571 PFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630
GV+ +VDE + C G S P F + E T G+Y++G
Sbjct: 360 AAAGVEIKVVDEARKTLPPGCEGEEA--SRGPNVFMGYLDEPEL--TARALDEEGWYYSG 415
Query: 631 DGCSS-------------------GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGI 671
D C G I + EVE L+ HP+ +A VV + E G+
Sbjct: 416 DLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERS 475
Query: 672 YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731
A+V L +S L + + RK++ + P+ I LP+T SGKI + +LRK
Sbjct: 476 CAYVVLKAPH-HSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDI 534
Query: 732 SRQL 735
R+L
Sbjct: 535 MRRL 538
|
Length = 547 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 120/550 (21%), Positives = 197/550 (35%), Gaps = 110/550 (20%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
L+Y++L Q+ +LA L+ +G+K GD V++ LP + E I A R+G V A S
Sbjct: 54 LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP--VLALPS 111
Query: 293 SDSLAQR--IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ + ++I + D E ++ +
Sbjct: 112 HRASELGAFASQIEAALLI-------VARQHSGFD-YRPFARELVAKHPTLRHVIVAG-- 161
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLHT 408
+ + +P DA + F + G+TG PK + T
Sbjct: 162 -----------EAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRT 210
Query: 409 TGGYMVH-TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP-----MLNGASVVVFE 462
Y A+ FD VY C H++ P L G +VV+
Sbjct: 211 HNDYYYSVRASAEICGFD--QQTVYLC----ALPAAHNFPLSSPGALGVFLAGGTVVL-- 262
Query: 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522
AP P + +++++ VT+ P L SL E+ R SLR+L G ++
Sbjct: 263 -APD-PSPELCFPLIERHGVTVTALVPPLA-SLWLQAAEW-ERADLSSLRLLQVGGARLS 318
Query: 523 PSAWRWFFNVVGDSRCPISDTWWQTE-----------------TGGFMITPLPGAWPQKP 565
+ R V+G C + + E T G ++P
Sbjct: 319 ATLARRVPAVLG---CQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVR---- 371
Query: 566 GSATFPFFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
+VD G + GE G L + P R Y + F
Sbjct: 372 -------------VVDADGNPVAPGE-VGELLTRG--PYTIRGYY-RAPEHNARAFDA-D 413
Query: 625 GYYFTGDG-------------------CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 665
G+Y +GD G +I EVE+ L+ HP +AA+V + E
Sbjct: 414 GFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDE 473
Query: 666 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 725
+ G+ AF+ + E + +LR+ L + + AF PD+I + LP T GKI ++
Sbjct: 474 LLGEKSCAFIVVKEPPLRAAQLRRFL---RERGLAAFKLPDRIEFVDSLPLTAVGKIDKK 530
Query: 726 ILRKIASRQL 735
LR+ + +L
Sbjct: 531 ALRRRLASRL 540
|
Length = 542 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 5e-22
Identities = 99/413 (23%), Positives = 141/413 (34%), Gaps = 102/413 (24%)
Query: 373 PKYPT----------KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
P YP + D +D +++YTSGSTG+PKGV A
Sbjct: 81 PAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRN-----AAAL-- 133
Query: 423 AFDYKPSDVYWCTADCG--WITGHSYVT-----------YGPMLNGASVVVFEGAPTYPD 469
+ W A + G T + P+ G VV+ + A PD
Sbjct: 134 --------LQWAAAVFSAEELAGVLAATSICFDLSVFEIFVPLSTGGRVVLADNALALPD 185
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
K +VT+ T P+ R L+R S+R + GEP+ +
Sbjct: 186 LPA------KAEVTLINTVPSAARELLRHDA------LPSSVRTVNLAGEPLPQELVQRL 233
Query: 530 ---------FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580
+N+ G P DT + T + P P S P G Q ++
Sbjct: 234 YALPQVERVYNLYG----PSEDTTYST---YAEVEPGASRTP----SIGRPLAGTQAYVL 282
Query: 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGD----HERYETTYFKPFPG--YYFTGDGCS 634
D + G L I G R G ER+ F PG Y TGD
Sbjct: 283 DAHLQPVPVGVPGELYI--GGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVR 340
Query: 635 -------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFV 675
G RI E+E+AL S P AEA VV + + + A++
Sbjct: 341 RRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYI 400
Query: 676 TLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
G E+LR L ++ A+ P + LP T +GKI R+ L
Sbjct: 401 VADPGAAIDIEDLRARL----ATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-22
Identities = 130/552 (23%), Positives = 206/552 (37%), Gaps = 74/552 (13%)
Query: 224 ANDPGVDAT------LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277
P A L+ ++L V +LA +L GV++GD V ++LP +E + LAC
Sbjct: 21 RARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLAC 80
Query: 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKS 337
AR+GA V + S +A + + + ++ K A L + AL
Sbjct: 81 ARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALP--PLR 138
Query: 338 GISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT-S 396
I+V V + A G + + P E D LL+T S
Sbjct: 139 AIAV-VDDAADATPAPAP-------GARVQLFALPDPAPPAAAGERAADPDAGALLFTTS 190
Query: 397 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD-CGWITGHSYVTYGPMLNG 455
G+T PK VLH ++ A A+ Y P V CG + G S + G + G
Sbjct: 191 GTTSGPKLVLHRQAT-LLRHARAIARAYGYDPGAVLLAALPFCG-VFGFSTLL-GALAGG 247
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
A +V P + D+ R+ + +++VT + ++R ++ E R S R+ G
Sbjct: 248 APLVCE---PVF-DAARTARALRRHRVTHTFGNDEMLRRILDTAGE---RADFPSARLFG 300
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-----TGGFMITP-----LPGAWPQKP 565
A + P++ + +E P G P P
Sbjct: 301 FAS---FAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASP 357
Query: 566 GSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYETT---YF 620
+ V+ + + +GE SG + I++ P R + + T YF
Sbjct: 358 EAR------VRARDPQDGALLPDGE-SGEIEIRA--PSLMRGYLDNPDATARALTDDGYF 408
Query: 621 KPFPGYYFTGDG-----CSSGH--RIG-----TAEVESALVSHPQCAEAAVVGVEHEVKG 668
+ Y GDG G R+G AE+E AL + P A A VVG + K
Sbjct: 409 RTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468
Query: 669 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG---KIMRR 725
AFV +G E L+ A R+ + F P ++ P T S KI +
Sbjct: 469 V-PVAFVIPTDGASPDEA---GLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKH 524
Query: 726 ILRKIASRQLDE 737
LR++A +L
Sbjct: 525 RLREMAQARLAA 536
|
Length = 540 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 7e-22
Identities = 138/573 (24%), Positives = 230/573 (40%), Gaps = 117/573 (20%)
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
D++A+ W D + T+ ++ +V LA L GV+KGD ++++ ++ +
Sbjct: 20 FPDRIALVWG------DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFES 73
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
M A R+GAV V F R +V + A G +A+ I A E
Sbjct: 74 MFAAFRLGAV--WVPTNF-------RQT--PDEVAYLAEA--SGARAM----ICHADFPE 116
Query: 334 ----CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAED 388
+ + + A G D + +V ++ + VD +D
Sbjct: 117 HAAAVRAASPDLTHVVAIGGARA----------GLDY--EALVARHLGARVANAAVDHDD 164
Query: 389 PLFLLYTSGSTGKPK-GVL-HTTGGYMV--HTATTFKYAFDYKPSDVYWCTADCGWITGH 444
P + +TSG+TG+PK VL H +++ H A D P D
Sbjct: 165 PCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLA-------DLMPGTTE---QDA------ 208
Query: 445 SYVTYGPMLNGASV----VVFEGAPTYP------DSGRSWDIVDKYKVTIFYTAPTLVRS 494
S V P+ +GA + V GA T D W +V++++VT +T PT+++
Sbjct: 209 SLVV-APLSHGAGIHQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI 554
L+ V RY SLR + G P+ + + +G + + E G I
Sbjct: 268 LVEH--PAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKV---LVQYFGLGEVTG-NI 321
Query: 555 TPLPGAW------PQ-KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRT 607
T LP A P + G+ F G++ I D++G E+ +G +C+ P F
Sbjct: 322 TVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIG--PAVFAG 379
Query: 608 LYGDHERYETTYFKPFPGYYF-TGD-------GC------------SSGHRIGTAEVESA 647
Y + E K F +F TGD G S G + E+E
Sbjct: 380 YYNNPEANA----KAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEK 435
Query: 648 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 707
L++HP +E AV+GV V G+ A +G P E L+ + ++ + P +
Sbjct: 436 LLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEA---ELLAWLDGKVARYKLPKR 492
Query: 708 IHWAPGLPKTRSGKIMRRILRKIASRQLDELGD 740
+ LPK+ GKI ++++R+ +L+E G
Sbjct: 493 FFFWDALPKSGYGKITKKMVRE----ELEERGL 521
|
Length = 528 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 7e-22
Identities = 119/550 (21%), Positives = 188/550 (34%), Gaps = 111/550 (20%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ TLTY +L ++ +A L+ GV GD V + +P E +A+
Sbjct: 1 PDATAVIDG------AGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAV 54
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L GA + D A+R I + A
Sbjct: 55 LGILLAGAA----YVPIDPDQPAERRAA------ILARA------GARAVLTDPGLAQPE 98
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ V D VD +D ++++
Sbjct: 99 EAPDLLVVAD-------------------------DAAAAESPAPPPPRVDPDDLAYVIF 133
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH----SYVTYG 450
TSGSTG+PKGV+ T V+T F P+D + H Y +G
Sbjct: 134 TSGSTGEPKGVMITHRA-AVNTILDVNRRFGVGPADRVLALSAL-----HFDLSVYDIFG 187
Query: 451 PMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR-- 508
+ GA++V+ + A D ++V ++ VT++ + P L+ L+ Y +R
Sbjct: 188 ALSAGAALVLPDEA-RRRDPDHWAELVQRHGVTVWNSVPALMDMLL----TYAEDAARLL 242
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRC-----PISDTWWQTETGGFMITPLPGAWPQ 563
SLR++ G+ I R + +R + W + I + W
Sbjct: 243 PSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWSIY---YPIDDVDPDWRS 299
Query: 564 KP-GSATFPFFGVQPVIVDEKGVE----IEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
P G P + ++DE G + + GE L I G +GD E
Sbjct: 300 IPYGK---PLPNQKFYVLDEDGRDCPDWVPGE----LYIGG--VGVALGYWGDPELTAER 350
Query: 619 YFKPFPG--YYFTGD-GCS------------------SGHRIGTAEVESALVSHPQCAEA 657
+ G Y TGD G G+R+ E+E+AL HP A
Sbjct: 351 FITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQRA 410
Query: 658 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717
VV V + AFV +G L A+ + + A+ P + LP T
Sbjct: 411 VVVVVGDGGAKA-LAAFVVAEDGAAVDAA---VLRAALAELLPAYMVPSRFVVLDALPLT 466
Query: 718 RSGKIMRRIL 727
+GK+ R+ L
Sbjct: 467 ANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 9e-22
Identities = 90/390 (23%), Positives = 150/390 (38%), Gaps = 82/390 (21%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTG------GYMVHTATTFKYAFDYKPSDVYWCTAD 437
D +D ++L+TSGSTGKPKGV + +MV FD DV+ A
Sbjct: 94 ADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVED-------FDLTEGDVFSNQAP 146
Query: 438 CGWITGHS-----YVTYGPMLNGASVVVFEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTL 491
S + + + +GA++ V + + + ++ +T++ + P+
Sbjct: 147 ------FSFDLSVFDLFPALASGATLYVI--PKEQIADPLALFEFLKEHGLTVWVSVPSF 198
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET-- 549
L+ + S SLR GE + + ++R I + + TE
Sbjct: 199 ASLLLLSRE--LNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNAR--IINLYGPTEATV 254
Query: 550 --GGFMIT--------PLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
+ +T PLP +P KPG +I+DE G + G L I
Sbjct: 255 AVTAYEVTPEPLSRNEPLPIGYP-KPGLRA--------LILDEDGRPVPPGEEGELVIA- 304
Query: 600 SWPGAFRTL--YGDHERYETTYFKPFP-GYYFTGD-GCSS------------------GH 637
G + + E+ +F+ +Y TGD G+
Sbjct: 305 ---GPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGY 361
Query: 638 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK 697
RI E+E+AL + P EA V+ V K + AFV EG ++ L+K L +K
Sbjct: 362 RIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTKALKKEL----KK 417
Query: 698 QIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
++ + P + + LP +GKI R+ L
Sbjct: 418 RLPPYMIPRRFVYLDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 9e-22
Identities = 128/558 (22%), Positives = 204/558 (36%), Gaps = 117/558 (20%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A+ D LTY QL ++ + + +G+ GDAV + E+ +A+
Sbjct: 27 DRPALVLG------DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA--VKRG----PKAIHLKDIVDA 329
A G + + S D A + D +I A V+R + LK ++
Sbjct: 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVL-- 138
Query: 330 ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389
L DG D+ K+ V D
Sbjct: 139 TLGPVP--------------------------DGVDLL--AAAAKFGPAPLVAAALPPDI 170
Query: 390 LFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTY 449
L YT G+TGKPKGV+ T + A A+ W ++
Sbjct: 171 AGLAYTGGTTGKPKGVMGTHRS-IATMAQ--------------IQLAEWEWPADPRFLMC 215
Query: 450 GP------------MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
P +L G +V+V D +++ ++T + PT++ +L+
Sbjct: 216 TPLSHAGGAFFLPTLLRGGTVIVLAKF----DPAEVLRAIEEQRITATFLVPTMIYALL- 270
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI-SDTWWQTETGGFMITP 556
D + TR SL + P++P G PI + + QTE IT
Sbjct: 271 DHPDLRTR-DLSSLETVYYGASPMSPVRLAEAIERFG----PIFAQYYGQTEAPMV-ITY 324
Query: 557 LP-----GAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSS------W--P 602
L P++ S P G++ ++DE G E+ GE G +C++ W P
Sbjct: 325 LRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGE-VGEICVRGPLVMDGYWNRP 383
Query: 603 G----AFRTLY---GDHERYETTYFKPFPGYYFTGDG-----CSSGHRIGTAEVESALVS 650
AFR + GD R + G+Y+ D + G + EVE L
Sbjct: 384 EETAEAFRDGWLHTGDVAREDED------GFYYIVDRKKDMIVTGGFNVFPREVEDVLAE 437
Query: 651 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHW 710
HP A+ AV+GV E G+ + A V L G L V+++ G+ AP ++ +
Sbjct: 438 HPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAA---ELQAHVKERKGSVHAPKQVDF 494
Query: 711 APGLPKTRSGKIMRRILR 728
LP T GK ++ LR
Sbjct: 495 VDSLPLTALGKPDKKALR 512
|
Length = 524 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 2e-21
Identities = 126/548 (22%), Positives = 204/548 (37%), Gaps = 80/548 (14%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ + G +Y +L +V ++A L +GV +GD V LP E L
Sbjct: 37 DKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYL 96
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN--------AVKRG--PKAIHLKD 325
ACARIGAV + + F L+ + KV + + A+ R K L+
Sbjct: 97 ACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQ 156
Query: 326 IV--DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 383
+V D D+ S D L R++T P
Sbjct: 157 VVVIDGDGDD------SFDRVLMTPE-----RDDT--------------PDAAAILAGPR 191
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWI 441
+D L+YTSG+TG+PKGV+HT + YA + DV +
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLF---SNIHPYAERLELGGGDVILMASPMAHQ 248
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TG Y P++ A+ V+ + + + R+ +++ + VT + + L R E
Sbjct: 249 TGFMYGLMMPLILNATAVLQD---IW-NPARAAELIRETGVTFTMASTPFLTDLCRAVKE 304
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
SL G PI + ++G W TE G +T A
Sbjct: 305 SGAPVP--SLFTFLCAGAPIPGILVERAWELLGALIV---SAWGMTENGAVTVTEPDDAL 359
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
+ + P GV+ ++D G ++ +G L ++ + +G + +
Sbjct: 360 EKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGC------SNFGGYLKRPHLNST 413
Query: 622 PFPGYYFTGD-------------GCSS------GHRIGTAEVESALVSHPQCAEAAVVGV 662
G++ TGD G S G I E+E+ L HP A+ A+V
Sbjct: 414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAY 473
Query: 663 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWAPGLPKTRSGK 721
E G+ A V G ++V ++ Q A P+++ LP T +GK
Sbjct: 474 PDERLGERACAVVVPKPGCTLD---FAAMVAFLKAQKVALQYIPERLEVVDALPATPAGK 530
Query: 722 IMRRILRK 729
I + LR+
Sbjct: 531 IQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 2e-21
Identities = 116/550 (21%), Positives = 195/550 (35%), Gaps = 109/550 (19%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAM 274
D++AI + +TY QL + V ++A YL ++ VKKG+ + I +E + +
Sbjct: 17 DRIAII------TEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLL 70
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A A++ + + + + L ++ D V+ K + AL
Sbjct: 71 FAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVE------------KTFQNMALSMQ 118
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
S + + +T + D + V K + + Y
Sbjct: 119 KVSYVQRVISITSLKEIE--------DRKID----NFVEK----------NESASFIICY 156
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TGKPKG + T M A +A D D I G + +
Sbjct: 157 TSGTTGKPKGAVLTQEN-MFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFA 215
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G ++V P + ++ +++K+KVT+ PT+ ++L+
Sbjct: 216 GGVIIV----PRKFEPTKALSMIEKHKVTVVMGVPTIHQALIN----------------- 254
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPI-------------SDTWWQTETGG--FMITPLPG 559
S E N + RWF+N G + CP + TET FM++
Sbjct: 255 CSKFETTNLQSVRWFYN--GGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDA 312
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 619
+K GS P ++DE ++E G L I+ P + + + E T
Sbjct: 313 R--RKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRG--PNVMKEYWNRPDATEETI 368
Query: 620 FKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAVV 660
G+ TGD S G I EVE + E AVV
Sbjct: 369 QD---GWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVV 425
Query: 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 720
G +H G+ AF+ E+ ++ R + + P +I + LPK +G
Sbjct: 426 GRQHVKWGEIPIAFIVKKSSSVLIEK---DVIEHCRLFLAKYKIPKEIVFLKELPKNATG 482
Query: 721 KIMRRILRKI 730
KI + L
Sbjct: 483 KIQKAQLVNQ 492
|
Length = 496 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 3e-20
Identities = 129/520 (24%), Positives = 212/520 (40%), Gaps = 45/520 (8%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+T+S +V + ANYL+ +GV+KGD V I LP + I G + ++
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN-QS 351
L ++ D KV++ + V + ++ + + L Y Q
Sbjct: 110 ERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQK 169
Query: 352 AMTRENTKWQDGRDI-WWQDVVPKYPTKCEVEWVDAEDPLFLL-YTSGSTGKPKGVLHTT 409
+ K + I W V + T EV D E+ L LL YT G+TG PKGV+ T
Sbjct: 170 KQSNLVVKVSESETIHLWNSVEKEVNTGVEVP-CDPENDLALLQYTGGTTGFPKGVMLTH 228
Query: 410 GGYMVHTATTFKYAFDYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468
+ +T ++ ++ K +V + G + V ++ G +V+ P +
Sbjct: 229 KNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLI---PKF- 284
Query: 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528
D ++ + K+KVT+F APT+ +L+ + + Y S+R S P+
Sbjct: 285 DMKMVFEAIKKHKVTLFPGAPTIYIALL--NSPLLKEYDISSIRACISGSAPLPVEVQEK 342
Query: 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK-PGSATFPFFGVQPVIVD-EKGVE 586
F V G + + + TE+ +T W ++ PGS P+ + +I+ E G
Sbjct: 343 FETVTGGK---LVEGYGLTESSP--VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEA 397
Query: 587 IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG-------------- 632
+ G + +K + + G + E T G+ TGD
Sbjct: 398 LPPGEIGEIVVKGP-----QIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDR 452
Query: 633 -----CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEEL 687
+SG + EVE L H + E +GV +G+ + AFV L EG SEE
Sbjct: 453 KKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEE- 511
Query: 688 RKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
L RK + A+ P + LPKT GKI+RR+L
Sbjct: 512 --ELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVL 549
|
Length = 563 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 4e-20
Identities = 91/440 (20%), Positives = 155/440 (35%), Gaps = 69/440 (15%)
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
+ R E + + G +TY +L ++V LA+ L +G+ GD V I
Sbjct: 16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAI 75
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
+ E IA LA +GAV +++ + + LA + + + KV+ N + +
Sbjct: 76 FAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQ-ELLDLVLP 134
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQ--SAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
+ + +D + V + L E A+ E + G ++ D +
Sbjct: 135 VLEDCPKVVD------LIVIIDLVREAVEAKALVLEVFPDE-GISLFLIDSAGL---EGR 184
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
+ +D ++YTSG+TG PKGV+ T + A + P D
Sbjct: 185 IAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAH 244
Query: 441 ITGHSYVTYGPMLNGASVVVFEG-----------APTY----PDSGRSWDIVDK------ 479
I ++ + G +V+ E PT P R W+ V K
Sbjct: 245 IFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVP---RVWEKVYKGIMEKV 301
Query: 480 -----YKVTIFYTA-------------PTLVRSLMRDGNEYVTRYSRKSL----RVLGSV 517
+ +F A S + + V R R +L R S
Sbjct: 302 AKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSG 361
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGSATFPFFGVQ 576
G P++P FF +G PI + + TET + P G+ P G++
Sbjct: 362 GAPLSPELLH-FFRSLG---IPILEGYGLTETSAVVSVNPP---DRFVLGTVGKPLPGIE 414
Query: 577 PVIVDEKGVEIEGE--CSGY 594
I D+ + + G GY
Sbjct: 415 VKIADDGEILVRGPNVMKGY 434
|
Length = 613 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 9e-20
Identities = 126/529 (23%), Positives = 209/529 (39%), Gaps = 83/529 (15%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
++Y QL LA L D G++ GD V + E + + A R G + +
Sbjct: 24 QVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE-CAKSGISVDVCLTYENQ 350
++ + D +V++ S AALD AK G + + L++ +
Sbjct: 84 TAPEADYIVGDSGARVLVAS-----------------AALDGLAAKVGADLPLRLSFGGE 126
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL--FLLYTSGSTGKPKGV--- 405
DG + + P E P +LY+SG+TG PKG+
Sbjct: 127 I----------DGFGSFEAALAGAGPRL-------TEQPCGAVMLYSSGTTGFPKGIQPD 169
Query: 406 -----LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN--GASV 458
+ G +V A F +D SD+Y+ +A I + + + M++ G +V
Sbjct: 170 LPGRDVDAPGDPIVAIARAF---YDISESDIYYSSAP---IYHAAPLRWCSMVHALGGTV 223
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
V+ A + D+ + V++Y++T+ PT+ L++ + TRY SLR +
Sbjct: 224 VL---AKRF-DAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAA 279
Query: 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P + +G PI ++ + M W PGS G
Sbjct: 280 APCPVDVKHAMIDWLG----PIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLGDLH- 334
Query: 579 IVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTY-FKPF------------P 624
I D+ G E+ G + P FR L + + PF
Sbjct: 335 ICDDDGNELPAGRIGTVYFERDRLP--FRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDED 392
Query: 625 GYYFTGDG-----CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 679
GY + D S G I E E+AL HP + AV+GV G+ + A + LVE
Sbjct: 393 GYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVE 452
Query: 680 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
G+ S+EL + L+ R +I + AP + + LP+T +GK+++ +LR
Sbjct: 453 GIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501
|
Length = 501 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-19
Identities = 119/546 (21%), Positives = 196/546 (35%), Gaps = 114/546 (20%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TLTY++L +Q LA L +GV+ GD V + +A+ A ++GA ++
Sbjct: 72 RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNT 131
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
GFS LA+ K ++ + D++ A + + +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD---------EFTDLLSALPPD-------LGRLRAW-- 173
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL--------FLLYTSGSTGK 401
++ + D D++ + PL ++ TSG+TG
Sbjct: 174 --GGNPDDDEPSGSTDETLDDLIAG----------SSTAPLPKPPKPGGIVILTSGTTGT 221
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHSYVTYGPMLNGASV 458
PKG P + A TG +++T L G++V
Sbjct: 222 PKGAPRPE----PSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMAL-GSTV 276
Query: 459 VV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
V+ F+ T D + K+K T P ++ ++ G E + +Y SL+++
Sbjct: 277 VLRRRFDPEATLED-------IAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIF 329
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
G ++P G + + TE F P + PG+ P GV
Sbjct: 330 VSGSALSPELATRALEAFGPVLY---NLYGSTEVA-FATIATPEDLAEAPGTVGRPPKGV 385
Query: 576 QPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGY--------- 626
I+DE G E+ G + + + +P F GY
Sbjct: 386 TVKILDENGNEVPRGVVGRIFVGNGFP--------------------FEGYTDGRDKQII 425
Query: 627 ----------YFTGDG------------CSSGHRIGTAEVESALVSHPQCAEAAVVGVEH 664
YF DG S G + AEVE L HP EAAV+GV+
Sbjct: 426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDD 485
Query: 665 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724
E GQ + AFV G E+ K VR + + P + + LP+ +GK+++
Sbjct: 486 EEFGQRLRAFVVKAPGAALDEDAIKD---YVRDNLARYKVPRDVVFLDELPRNPTGKVLK 542
Query: 725 RILRKI 730
R LR++
Sbjct: 543 RELREM 548
|
Length = 549 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-19
Identities = 114/553 (20%), Positives = 192/553 (34%), Gaps = 118/553 (21%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+K+AI D LTY + VC++AN+L + K + I L +E
Sbjct: 16 NKIAIKEN------DRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFA 68
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A G + + D L +R+ +++T L D+ D E
Sbjct: 69 GAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTE--------RYKLNDLPDE---EGR 117
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
I +D M + P Y V+ P ++ +T
Sbjct: 118 V--IEIDEW------KRMIEKYL--------------PTYAPIENVQ----NAPFYMGFT 151
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG---HSYVTYGPM 452
SGSTGKPK L ++ H+ + F K D I G HS YG
Sbjct: 152 SGSTGKPKAFLRAQQSWL-HSFDCNVHDFHMKREDSVL-------IAGTLVHSLFLYG-- 201
Query: 453 LNGASVVVFEGAPTY------PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
A ++ G + P+ ++ +++ YT PT++ SL + R
Sbjct: 202 ---AISTLYVGQTVHLMRKFIPNQVLDK--LETENISVMYTVPTMLESLYK-----ENRV 251
Query: 507 SRKSLRVLGSVGE----------PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556
++++ S + I P A + F + F+
Sbjct: 252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEF--------------YGASELSFVTAL 297
Query: 557 LPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW------PGAFRTLYG 610
+ ++P S PF VQ I +E G E++ G + +KS G
Sbjct: 298 VDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLAREL 357
Query: 611 DHERYETTY---FKPFPGY-YFTGDG----CSSGHRIGTAEVESALVSHPQCAEAAVVGV 662
+ + + T ++ G+ Y G G I E+ES L HP E V+GV
Sbjct: 358 NADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGV 417
Query: 663 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 722
G+ V +++G ++L+ +++ +F P + H+ +P T SGKI
Sbjct: 418 PDSYWGE---KPVAIIKGSATKQQLKS----FCLQRLSSFKIPKEWHFVDEIPYTNSGKI 470
Query: 723 MRRILRKIASRQL 735
R + Q
Sbjct: 471 ARMEAKSWIENQE 483
|
Length = 487 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 2e-19
Identities = 94/382 (24%), Positives = 135/382 (35%), Gaps = 73/382 (19%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTG----GYMVHT---------ATTFKYAFDYKPSDVYW 433
D L++LYT G+TG PKGV+ + K + +
Sbjct: 3 ADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAA-GGAGTRF 61
Query: 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIF------YT 487
A C + G L VV + D R W V+K++V +
Sbjct: 62 LPA-CPLMHGAGQWLALSALFAGGTVVLLPDDKF-DPDRVWRTVEKHRVNTLVIVGDAFA 119
Query: 488 APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS---AW-RWFFNVVGDSRCPISDT 543
P L+ +L G RY SLR + S G +P N+ + D
Sbjct: 120 RP-LLEALEAAG-----RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLA------LVDA 167
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIE---GECSGYLCIKS 599
+ETGG SAT F G V++DE G E+ GE G++
Sbjct: 168 LGASETGGGGS----SVSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGE-VGWIARGG 222
Query: 600 SWPGAFRTLYGDHERYETTYFK------PFPGYYFT------------GDGC--SSGHRI 639
P + Y D E+ T+ + PG + G C + G ++
Sbjct: 223 RVPLGY---YKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKV 279
Query: 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 699
EVE AL +HP A+A VVGV E GQ + A V L G L R+ +
Sbjct: 280 FPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLA---ELRDHCRQHL 336
Query: 700 GAFAAPDKIHWAPGLPKTRSGK 721
+ P I +P+ SGK
Sbjct: 337 AGYKLPRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 3e-19
Identities = 98/511 (19%), Positives = 176/511 (34%), Gaps = 98/511 (19%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+ L + LA LK G++ G V + +E+ + + AC +GA +++ +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353
+ ++ D ++++T + KD +LD +G
Sbjct: 61 NERTNQLEDLDVQLLLT-------DSLLEEKDFQADSLDRIEAAG--------------- 98
Query: 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
+Y T + + L++TSG+TGKPK V HT +
Sbjct: 99 --------------------RYETSLSASFNM-DQIATLMFTSGTTGKPKAVPHTFRNHY 137
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
A K + D + + I+G S + + ++ GA++ + + +
Sbjct: 138 AS-AVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFNQLLEM--- 192
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS-VGEPINPSAWRWFFNV 532
+ +VT PT + L+ +G + + + + GS + P+ A
Sbjct: 193 ---IANERVTHISLVPTQLNRLLDEGG---HNENLRKILLGGSAIPAPLIEEA------- 239
Query: 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
PI ++ TET + T P +P P G + I +
Sbjct: 240 -QQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGR-PLAGREIKIKVDNKEGH----- 292
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD-G------------------C 633
G + +K + Y + + G++ TGD G
Sbjct: 293 GEIMVKG--ANLMKG-YLYQGELTPAFEQQ--GWFNTGDIGELDGEGFLYVLGRRDDLII 347
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
S G I E+E+ L HP EA VV GQ A++ E +L L
Sbjct: 348 SGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVS-ESDISQAKLIAYL-- 404
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724
+++ + P LP SGKI+R
Sbjct: 405 --TEKLAKYKVPIAFEKLDELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 9e-19
Identities = 90/387 (23%), Positives = 141/387 (36%), Gaps = 79/387 (20%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA----DCGW 440
+DP +++YTSGSTGKPKGV+ T + + +P D A D
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRN-ICNFLRAEGAILGIRPGDRVLQFASIAFDVSI 155
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDI---VDKYKVTIFYTAPTLVRSLMR 497
+ + +L G ++V P+ R D+ +++ +VT+ + P+L+ L
Sbjct: 156 LE-----IFTTLLAGGTLV------IPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL-- 202
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPS-AWRW-----FFNVVGDSRCPISDTWWQTETGG 551
SLR L GE + RW N G + ++ T
Sbjct: 203 ------DPEDVPSLRTLILGGEACPQALVDRWSKPRRLLNTYGPTEATVTATA------- 249
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLY 609
PG KP + P ++D + G G LCI PG R
Sbjct: 250 --SRLTPG----KPVNIGRPLPNYTCWVLDPDLEPLVPIGA-VGELCIGG--PGVARGYL 300
Query: 610 GDHERYETTYFK-PFPGY------YFTGD----GCSS---------------GHRIGTAE 643
E + PF Y TGD G RI E
Sbjct: 301 NRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGE 360
Query: 644 VESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL--VEGVPYSEELRKSLVLAVRKQIGA 701
+E+ L + P AAVV + + G+ + AF+ + G ++ L A+R+++ +
Sbjct: 361 IEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPS 420
Query: 702 FAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ P LP T SGK+ R+ LR
Sbjct: 421 YMVPSVYVPLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-18
Identities = 64/292 (21%), Positives = 103/292 (35%), Gaps = 51/292 (17%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ + D TY + + +LA+ L +G+ KGD V + P + A
Sbjct: 18 PDRTAVVY------GDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAH 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA-------VKRGPKAIHLKDIV 327
GAV + +D +A + + KV+ + D
Sbjct: 72 FGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTE 131
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
+ A+ D YE+ A + D EW
Sbjct: 132 IIVISPAAEDSEEGD----YEDLLAGGDPDPLPIPPDD----------------EW---- 167
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD----CGWITG 443
DP+ L YTSG+TG PKGV++T G ++ A + VY T GW
Sbjct: 168 DPISLNYTSGTTGNPKGVVYTHRGAYLN-ALGNVIEWGMPDRPVYLWTLPMFHCNGW--C 224
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495
+ G + V D+ +D+++K+KVT APT++ L
Sbjct: 225 F---PWAITAVGGTHVCLRK----VDAPAIYDLIEKHKVTHLCGAPTVLNML 269
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 4e-18
Identities = 121/536 (22%), Positives = 188/536 (35%), Gaps = 99/536 (18%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
TY++ + A+ L GVK+GD V + +E L CA +GA+
Sbjct: 47 WTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI--------- 97
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS---VDVCLTYEN 349
+ N RGP+ H+ SG V+ L
Sbjct: 98 ---------------AVPINTALRGPQLEHI----------LRNSGARLLVVEAALLAAL 132
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV---------EWVDAE-----DPLFLLYT 395
++A + +W D A D +LYT
Sbjct: 133 EAADPGD----LPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYT 188
Query: 396 SGSTGKPKGVLHTTGGYM---VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
SG+TG KGV + ++A + DV + T + + +
Sbjct: 189 SGTTGPSKGVCCPHAQFYWWGRNSAE----DLEIGADDVLYTTLPLFHTNALN-AFFQAL 243
Query: 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
L GA+ V+ P + SG W V ++ T+ Y +V L +R
Sbjct: 244 LAGATYVL---EPRFSASG-FWPAVRRHGATVTYLLGAMVSIL--LSQPARESDRAHRVR 297
Query: 513 V-LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
V LG +A+R F V + D + TET + Q+PGS
Sbjct: 298 VALGPGVPAALHAAFRERFGV------DLLDGYGSTETNFVIAVTHGS---QRPGSMGRL 348
Query: 572 FFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY-GDHER----YETTYF------ 620
G + +VDE E+ G L +++ P AF T Y G E+ + +F
Sbjct: 349 APGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRV 408
Query: 621 --KPFPGYYFTGDGCSS----GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAF 674
+ F + G I + EVE L+SHP A AAV V E+ + A
Sbjct: 409 VRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAA 468
Query: 675 VTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730
V L +G +LV ++ FA P + + LPKT +GK+ + +LR+
Sbjct: 469 VVLRDGTALEPV---ALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQ 521
|
Length = 542 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-18
Identities = 99/374 (26%), Positives = 146/374 (39%), Gaps = 53/374 (14%)
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+T G+TG PK H+ V A P DV + G P
Sbjct: 7 YFHTGGTTGAPKLARHSHRN-EVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAP 65
Query: 452 MLNGASVVVFEGAPTYPDS---GRSWDIVDKYKVTIFYTAPTLVRSL--MRDGNEYVTRY 506
+ GA+VV+ + + W IV++Y+VT+ PT++ +L + G+ ++
Sbjct: 66 LARGATVVL-PTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDADIS-- 122
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKP 565
SLR + P+ R F V G P+ + + TE TG I P G P++P
Sbjct: 123 ---SLRYALTGAAPLPVEVARRFEAVTG---VPVVEGYGMTEGTGVSAINPRGG--PRRP 174
Query: 566 GSA--TFPFFGVQPVIVDEKGVEIEGECS----GYLCIKSSWPGAFRTLYGDHERYETTY 619
GS P+ V+ +D G +C+ G L I+ P F Y +
Sbjct: 175 GSVGLRLPYTRVRVAKLDAGGALGR-DCAPGEVGVLAIRG--PNVFPG-YLNDAHNAGAR 230
Query: 620 FKPFPGYYFTGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAVV 660
+ G+ TGD G GH I +E AL+ HP A AA V
Sbjct: 231 LED--GWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAV 288
Query: 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIHWAPGLPKTRS 719
G G+ A+V L G +E L+ V+ +I AA P I+ LP T
Sbjct: 289 GRPDAYAGELPVAYVQLKPGATVTEG---ELLAFVKARIPERAAVPKAIYIIDALPLTAV 345
Query: 720 GKIMRRILRKIASR 733
GKI + LR A+
Sbjct: 346 GKIFKPRLRCDAAE 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 5e-18
Identities = 125/561 (22%), Positives = 205/561 (36%), Gaps = 135/561 (24%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++L + +LA+ L+ GV V I EL +A+LA + G + +
Sbjct: 2026 DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDP 2085
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
+ ++ LA + D +++T + +R P + L +
Sbjct: 2086 NYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGV-------------------ARLPLD 2126
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
RD W D YP + E+ +++YTSGSTG PKGV +
Sbjct: 2127 ---------------RDAEWAD----YPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVS 2167
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTADC--------------GWITGHSYVTYGPMLN 454
G + H + Y+ S ADC W P+LN
Sbjct: 2168 HGALVAHCQAAGER---YELSP-----ADCELQFMSFSFDGAHEQWFH--------PLLN 2211
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM----RDGNEYVTRYSRKS 510
GA V++ + D + +D ++++ VTI P ++ L RDG +
Sbjct: 2212 GARVLIRDD--ELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR-------PPA 2262
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---PQKPGS 567
+RV GE + ++ R + + + + + TE ++TPL W PQ P
Sbjct: 2263 VRVYCFGGEAVPAASLRLAWEALRPVY--LFNGYGPTEA---VVTPL--LWKCRPQDPCG 2315
Query: 568 ATFPFFGVQPV------IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
A + G + + I+D + +G L + G G R T +
Sbjct: 2316 AAYVPIG-RALGNRRAYILDADLNLLAPGMAGELYL-----GGEGLARGYLNRPGLTAER 2369
Query: 622 ----PFPG----YYFTGDGCSS-------------------GHRIGTAEVESALVSHPQC 654
PF Y TGD G RI E+E+ L +HP
Sbjct: 2370 FVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAV 2429
Query: 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 714
EA VV + G+ + A+V +E+L L + ++ A+ P L
Sbjct: 2430 REAVVVAQD-GASGKQLVAYVV---PDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERL 2485
Query: 715 PKTRSGKIMRRILRKIASRQL 735
P +GK+ R+ L K QL
Sbjct: 2486 PLNPNGKLDRKALPKPDVSQL 2506
|
Length = 5163 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 5e-18
Identities = 106/517 (20%), Positives = 181/517 (35%), Gaps = 82/517 (15%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY++L V +LA L+ G G+ + + + L ACAR+GA++ + S+
Sbjct: 24 TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSA 83
Query: 294 DSLAQRIMDCKPKVVITSNAVKRG-PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
L + D +P++++ +AV G L + +A +
Sbjct: 84 SELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASA-----------------DALEP 126
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
+ + E +L+TSG++G+PKGV+ +
Sbjct: 127 ADTPS--------------------------IPPERVSLILFTSGTSGQPKGVMLSERN- 159
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
+ TA F + C A I G + G S++V G GR
Sbjct: 160 LQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGR 219
Query: 473 SWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532
D +T ++ P + ++ L L + G P +
Sbjct: 220 LGDP--ALGITHYFCVPQMAQAFRAQPGFDAAALRH--LTALFTGGAPHAAEDILGWL-- 273
Query: 533 VGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC 591
D P+ D + +E G + K G+A P VQ +VD++G +
Sbjct: 274 --DDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGV 331
Query: 592 SGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC------------------ 633
G L ++ P + + T G++ TGD
Sbjct: 332 PGELLLRG--PNLSPGYWRRPQ--ATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMF 387
Query: 634 -SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSL 691
S G + AE+E+ L HP E AVVG+ G+ Y + +G P E +R L
Sbjct: 388 ISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHL 447
Query: 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
++ + P + LP+T SGK+ + LR
Sbjct: 448 S----TRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480
|
Length = 488 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 8e-18
Identities = 143/624 (22%), Positives = 217/624 (34%), Gaps = 169/624 (27%)
Query: 208 RNIEAGLGDKVAIYWEA-----NDPGVD---ATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
+++ G V +Y A + P +D AT TY++L +QV + A L+ +GV+ GD
Sbjct: 25 HDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDR 84
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRG 317
V I LP + +A A R+GAV VV +++ L D +V I + K
Sbjct: 85 VAIVLPNCPQHIVAFYAVLRLGAV--VVEHNPLYTAHELEHPFEDHGARVAIVWD--KVA 140
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW---------QDGRD--- 365
P L+ L+ +SV++ +AM + + R
Sbjct: 141 PTVERLRR--TTPLETI----VSVNMI------AAMPLL-QRLALRLPIPALRKARAALT 187
Query: 366 ------IWWQDVV----PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
+ W+ +V + +D +LYTSG+TGKPKG T +
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247
Query: 416 TATTFKYAFDYKPSDVYWCTADCG--WITG---------------HSY-----VTYGPML 453
A G W+ G H+Y +T +
Sbjct: 248 AAQ--------------------GKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSI 287
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
G +V+ P PD D + K+ T P L + E +R
Sbjct: 288 -GGELVLL---PA-PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE--RGVDLSGVR- 339
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDT-WWQTETGGFMI--------TPLPGAWP-- 562
G P+S W+ TGG ++ +P+ P
Sbjct: 340 ----------------NAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS 383
Query: 563 --QKPGSATFPFFGVQPVIVDEKGVEI------EGEC--------SGYLCI-----KSSW 601
++PG PF + IVD + + EGE GY KS
Sbjct: 384 DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL 443
Query: 602 PGAFRTLYGDHERYETTYF-------KPFPGYYFTGDGCSSGHRIGTAEVESALVSHPQC 654
G FRT GD E F K TG G + AEVE L HP
Sbjct: 444 DGWFRT--GDVVVMEEDGFIRIVDRIKEL---IITG-----GFNVYPAEVEEVLREHPGV 493
Query: 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEE-LRKSLVLAVRKQIGAFAAPDKIHWAPG 713
+AAVVG+ E + + A V L G E LR R+ + + P + +
Sbjct: 494 EDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYC----REHLTRYKVPRRFYHVDE 549
Query: 714 LPKTRSGKIMRRILRKIASRQLDE 737
LP+ + GK+ RR +R+ +L
Sbjct: 550 LPRDQLGKVRRREVREELLEKLGA 573
|
Length = 573 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 9e-18
Identities = 119/544 (21%), Positives = 199/544 (36%), Gaps = 114/544 (20%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y +L Q+ LA L +G+K+GD ++ LP + E I A ++G V A FS
Sbjct: 49 WSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAP--VLALFS 106
Query: 293 SDSL-----AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
A +I +P + I +A L D D A +K T
Sbjct: 107 HRKSELTAYASQI---EPALYI-------IDRAHSLFDYDDFARQLQSK-------LPTL 149
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
N + + +W + P P K +++ F + GSTG PK +
Sbjct: 150 RN---IIVAGQTGEAELFLWLES--PAEPVKFPP--TKSDEVAFFQLSGGSTGTPKLIPR 202
Query: 408 TTGGYMVH-TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA-- 464
T Y + Y C H+Y P GA V + G
Sbjct: 203 THNDYYYSVRRSVEICWLT--QQTRYLCALP----AAHNYPLSSP---GALGVFYAGGCV 253
Query: 465 --PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522
P + +++++KVT+ P V M+ ++ R SL++L G +
Sbjct: 254 VLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS--RADLSSLKLLQVGGAKFS 311
Query: 523 PSAWRWFFNVVGDSRCPISDTWWQTE-----------------TGGFMITPLPGAWPQKP 565
+A R V G C + + E T G ++P
Sbjct: 312 AAAARRVPAVFG---CQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVR---- 364
Query: 566 GSATFPFFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
+VD+ G + GE +G L + P FR Y E +
Sbjct: 365 -------------VVDDHGNPVAPGE-TGMLLTRG--PYTFRGYYKAPEHNAAAFDAE-- 406
Query: 625 GYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHE 665
G+Y+TGD G +I E+E+ L++HP +AA+V + E
Sbjct: 407 GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDE 466
Query: 666 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMR 724
+ G+ AF+ + + + +LR+ L R++ + + PD++ + LP T GK+ +
Sbjct: 467 LLGEKSCAFIVVRDPALKAAQLRRFL----RERGLAEYKLPDRVEFVDSLPLTAVGKVDK 522
Query: 725 RILR 728
+ LR
Sbjct: 523 KALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 1e-17
Identities = 121/549 (22%), Positives = 191/549 (34%), Gaps = 109/549 (19%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D ++ +L Q+ + A L +GV+ GD V + + A A R+GA V
Sbjct: 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD--------ECAKS-GIS 340
F + +A + D +V+I + G L + A + E A + IS
Sbjct: 69 HFKPEEIAYILEDSGARVLIAHADLLHG-----LASALPAGVTVLSVPTPPEIAAAYRIS 123
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
+ A+ E W ++ + VP+ P ++YTSG+TG
Sbjct: 124 PALLTP--PAGAIDWE--GWLAQQEPYDGPPVPQ--------------PQSMIYTSGTTG 165
Query: 401 KPKGVLHT--TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGA-- 456
PKGV T + KP T GP+ + A
Sbjct: 166 HPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLT--------------GPLYHSAPN 211
Query: 457 ----------SVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
V+V + P + D +++++++T + PT+ L++ E +Y
Sbjct: 212 AYGLRAGRLGGVLVLQ--PRF-DPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY 268
Query: 507 SRKSLRVLGSVGEPINPSAWR----WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
SLR + P R W+ V I + + TE+G +
Sbjct: 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPV-------IYEYYGSTESGA-VTFATSEDAL 320
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIE----GECSGYLCIKSSWPGA--FRTLYGDHERYE 616
PG+ G + VDE G + GE I S G F +R E
Sbjct: 321 SHPGTVGKAAPGAELRFVDEDGRPLPQGEIGE------IYSRIAGNPDFTYHNKPEKRAE 374
Query: 617 TT-----------YFKPFPGYYFTGDG-----CSSGHRIGTAEVESALVSHPQCAEAAVV 660
Y GY F D S G I AE+E+ L + P + AV
Sbjct: 375 IDRGGFITSGDVGYLDA-DGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVF 433
Query: 661 GVEHEVKGQGIYAFVTLVEGVPYSEE-LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719
G+ G+ + A V G E +R L + ++ + P I LP+ S
Sbjct: 434 GIPDAEFGEALMAVVEPQPGATLDEADIRAQL----KARLAGYKVPKHIEIMAELPREDS 489
Query: 720 GKIMRRILR 728
GKI +R LR
Sbjct: 490 GKIFKRRLR 498
|
Length = 509 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-17
Identities = 79/335 (23%), Positives = 121/335 (36%), Gaps = 75/335 (22%)
Query: 212 AGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
A D + +D + TLTY++L ++ +A L+ +G GD V++ P ++
Sbjct: 4 AAQPDARYTFL-FDDDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFV 61
Query: 272 IAMLACARIGAV----HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327
A C GA+ G LA + D + V+T++AV +
Sbjct: 62 AAFFGCLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAA---------L 112
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
AAL A + + +A W+ P D +
Sbjct: 113 RAALAAPAALLLLLIAADDLAALAAAD-------------WRPPPP-----------DPD 148
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT-----ADCGWIT 442
D FL YTSGSTG PKGV+ T G + + + AF P DV + D G I
Sbjct: 149 DIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIAR-AFGLDPDDV-GVSWLPLYHDMGLIG 206
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTY----PDSGRSW-DIVDKYKVTIFYTAPTLVRSLMR 497
G P+ G VV+ +P P W + + +Y+ T+ AP L
Sbjct: 207 G----LLQPLYAGFPVVLM--SPLAFLRRP---LRWLEAISRYRATVSG-APNFAYDLC- 255
Query: 498 DGNEYVTRYSRK--------SLRVLGSVGEPINPS 524
V R + S RV + EP+
Sbjct: 256 -----VRRVRDEQLAGLDLSSWRVAFNGAEPVRAD 285
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-17
Identities = 92/371 (24%), Positives = 140/371 (37%), Gaps = 47/371 (12%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWIT 442
+D L+YTSG+TG+PKGV+HT M A YA DV + T
Sbjct: 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLM---ANIVPYAERLGLGADDVILMASPMAHQT 251
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
G Y P++ GA+ V+ + D R+ +++ VT + + L R E
Sbjct: 252 GFMYGLMMPVMLGATAVLQD----IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE- 306
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ SLR G PI + +G W TE G +T
Sbjct: 307 -SGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVS---AWGMTENGAVTLT-KLDDPD 361
Query: 563 QKPGSAT--FPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
++ S T P GV+ +VD G + G L ++ F + T
Sbjct: 362 ER-ASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRG--CSNFGGYLKRPQLNGTD-- 416
Query: 621 KPFPGYYFTGD-------GCSS------------GHRIGTAEVESALVSHPQCAEAAVVG 661
G++ TGD G G I E+E+ L HP A+ A+V
Sbjct: 417 --ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVA 474
Query: 662 VEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 720
E G+ AFV G EE+ + L +++ P+++ LP+T SG
Sbjct: 475 YPDERLGERACAFVVPRPGQSLDFEEMVEFL---KAQKVAKQYIPERLVVRDALPRTPSG 531
Query: 721 KIMRRILRKIA 731
KI + LR++
Sbjct: 532 KIQKFRLREML 542
|
Length = 547 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-16
Identities = 121/529 (22%), Positives = 203/529 (38%), Gaps = 91/529 (17%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D ++Y++ Q++ Q A L G+ +GD V + + A + +GAV +
Sbjct: 25 DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINY 84
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++D +A + D K+++ K ++DAA
Sbjct: 85 RLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAA------------------ 126
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF-LLYTSGSTGKPKGVLHT 408
Q+ R Q G +I P+ A L L+YTSG+T +PKGV+H+
Sbjct: 127 QADSRRLA---QGGLEI-----PPQAAV--------APTDLVRLMYTSGTTDRPKGVMHS 170
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTAD----CGWITGHSYVTYGPM-------LNGAS 457
G +++W + D G + GP+ L G +
Sbjct: 171 YG-------------------NLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIA 211
Query: 458 VVVFEGAPTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
V+ G D ++++++T + AP ++ ++ + R+ SL
Sbjct: 212 VLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD--RFDLDSLAWC 269
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFG 574
GE S R F V +R D + TET G +K GS
Sbjct: 270 IGGGEKTPESRIRDFTRVFTRAR--YIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAH 327
Query: 575 VQPVIVDEKGVEIEGECSGYLCI------KSSWPGAFRT---LYGDHERYETTYFKPFPG 625
V+ I D G + G +C+ K W +T YGD R + G
Sbjct: 328 VEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEG 387
Query: 626 YYFTGDG-----CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG 680
+ + D S G I ++EVE + P+ AEAAV+GV + G+ I A V L G
Sbjct: 388 FLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPG 447
Query: 681 VPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ E L + R+++ +F P ++ LP+ SGK+++R+LR
Sbjct: 448 ATLTLEALDRH----CRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLR 492
|
Length = 497 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 1e-16
Identities = 135/530 (25%), Positives = 202/530 (38%), Gaps = 81/530 (15%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
T T+ +L +V LA L GV GD V+I + E ++LA +GA+ V
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ +A + DC VV+T A+ P A ++DIV G S D L YE+
Sbjct: 101 LTPPEIAFLVSDCGAHVVVTEAAL--APVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDL 158
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED-PLFLLYTSGSTGKPKG-VL-H 407
A + G D+ D P ++YTSG+TG+PKG VL H
Sbjct: 159 LA--------EAGPAHAPVDI--------------PNDSPALIMYTSGTTGRPKGAVLTH 196
Query: 408 TTGGYMVHTATTFKYAFDY-KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPT 466
+ A T SDV + I G + G +L GAPT
Sbjct: 197 AN---LTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLL---------GAPT 244
Query: 467 --YP----DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
YP D G+ D+++ KVT + P +++ + R +LRVL P
Sbjct: 245 VIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQ---ARPRDLALRVLSWGAAP 301
Query: 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580
+ + R +++ I + QTE L +K GS V +V
Sbjct: 302 ASDTLLRQMAATFPEAQ--ILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVV 359
Query: 581 DEKGVEIE----GEC--------SGYLCIKSSWPGAFRTLY---GDHERYETTYFKPFPG 625
DE ++ GE SGY + AF + GD R + G
Sbjct: 360 DENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEE------G 413
Query: 626 YYFTGDG-----CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG 680
Y + D S G I AEVE+ L SHP E AV+G E G+ A +
Sbjct: 414 YVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND 473
Query: 681 VPYSEELR-KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
L + L + ++ + P + LP+ +GK+++ LR+
Sbjct: 474 ---DAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRE 520
|
Length = 542 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 2e-16
Identities = 124/552 (22%), Positives = 208/552 (37%), Gaps = 109/552 (19%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
LTY++L ++ +LA+ L GV V I + E+ + +LA + G + + +
Sbjct: 4576 KLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEY 4635
Query: 292 SSDSLAQRIMDCKPKVVIT-SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ LA + D +++T S+ ++R P G++ L +
Sbjct: 4636 PRERLAYMMEDSGAALLLTQSHLLQRLPIP----------------DGLA---SLALD-- 4674
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
RD W+ +P + ++ +++YTSGSTG+PKGV + G
Sbjct: 4675 -------------RDEDWEG----FPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHG 4717
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEG 463
+ H T + Y T D + S+ Y P++NGASVV+
Sbjct: 4718 SLVNHLHAT---------GERYELTPDDRVLQFMSFSFDGSHEGLYHPLINGASVVI--R 4766
Query: 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523
+ D R + + +++VT+ P ++ L SLRV GE +
Sbjct: 4767 DDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAER---DGEPPSLRVYCFGGEAVAQ 4823
Query: 524 S----AWR-----WFFNVVGDSRCPISDTWWQTETG---GFMITPLPGAWPQKPGSATFP 571
+ AWR + FN G + ++ W+ G G P+ + G
Sbjct: 4824 ASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDG 4883
Query: 572 FFGVQPV-IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF-KPFPGYYFT 629
PV + E + EG GYL P ER+ F P Y T
Sbjct: 4884 QLNPLPVGVAGELYLGGEGVARGYL----ERPAL------TAERFVPDPFGAPGGRLYRT 4933
Query: 630 GDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 670
GD G RI E+E+ L HP EA V+ E V G+
Sbjct: 4934 GDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAV-GKQ 4992
Query: 671 IYAFVT-----LVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 725
+ +V L + ELR L A+R+++ + P + + +P T +GK+ R+
Sbjct: 4993 LVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRK 5052
Query: 726 ILRKIASRQLDE 737
L + + L +
Sbjct: 5053 ALPQPDASLLQQ 5064
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-16
Identities = 113/580 (19%), Positives = 192/580 (33%), Gaps = 140/580 (24%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++L ++ +LA+ L IGV V + + +E+ +A+LA + G + +
Sbjct: 3118 DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDP 3177
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
+ + LA I D K+++T + ++ P + LD
Sbjct: 3178 EYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNG------------- 3224
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
Y V E+ +++YTSGSTGKPKGV
Sbjct: 3225 --------------------------YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVR 3258
Query: 409 TGGYMVH----------TATT-----FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
G H A ++FD W ++
Sbjct: 3259 HGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLW-----------------TLI 3301
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
G +VV + P+ W + ++++I P ++ D SL +
Sbjct: 3302 CGGCLVVRDNDLWDPE--ELWQAIHAHRISIACFPPAYLQQFAEDAG----GADCASLDI 3355
Query: 514 LGSVGEPINPSAW---------RWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP-- 562
GE + P+A+ R N G + ++ T W+ P
Sbjct: 3356 YVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDA---VCEAPYAPIG 3412
Query: 563 -QKPGSATFPFFG-VQPVIVDEKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 619
G + + G + PV V G + I G G + ER+
Sbjct: 3413 RPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLAR--------GYHQRPSLTAERFVAD- 3463
Query: 620 FKPFPG----YYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAE 656
PF G Y TGD G RI E+E+ L+ HP E
Sbjct: 3464 --PFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVRE 3521
Query: 657 AAVVGVEHEVKGQGIYAFVTL-VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 715
A V+ + G+ + A+V + E LR L + + P ++ +P
Sbjct: 3522 AVVLARDGA-GGKQLVAYVVPADPQGDWRETLRDHL----AASLPDYMVPAQLLVLAAMP 3576
Query: 716 KTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755
+GK+ R+ L ++ E +A V+Q +A
Sbjct: 3577 LGPNGKVDRKALPDPDAKGSREY-----VAPRSEVEQQLA 3611
|
Length = 3956 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 2e-16
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 702 FAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLAD 746
+A P ++ + LPKTRSGKI+RR+LR IA + +LGD STL D
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIALGE--DLGDLSTLED 43
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-16
Identities = 92/438 (21%), Positives = 138/438 (31%), Gaps = 123/438 (28%)
Query: 371 VVPKYPT-----------KCEVEWV----DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
VP YPT V +D L+YTSG+TG PKGV+ T ++
Sbjct: 57 PVPIYPTSSPEEVAYILNDSGARVVFVEDKPDDLATLIYTSGTTGNPKGVMLTHRN-LLA 115
Query: 416 TATTFKYAFDYKPSDVY------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
A P D + Y P+ +GA V E T +
Sbjct: 116 QAAALLEVIPLSPGDRVLSFLPLA------HVFEQRLGEYLPLSSGARVNFAESPETLLE 169
Query: 470 SGRSWDIVDKYKVTIFYTAPTL-------VRSLMRDGNEYVTRYSRK---------SLRV 513
R + + T+F+ P + + + + RK LR
Sbjct: 170 DLR------EVRPTVFFAVPRVWEKIYAGIEAKVAAA----GPLKRKLFRWALGGGRLRF 219
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
S G P+ P FF +G PI + + TET G PG + G+ P
Sbjct: 220 AVSGGAPLPPEVLE-FFRALG---IPILEGYGLTETSGVATVNRPGDI--RIGTVGKPLP 273
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP--GYYFTGD 631
GV+ I + +GE + ++ P + Y + E G+ TGD
Sbjct: 274 GVEVRIAE------DGE----ILVRG--PNVMKGYYKNPEATAEA----LDEDGWLHTGD 317
Query: 632 -------G-------------CSSGHRIGTAEVESALVSHPQCAEAAVVG---------- 661
G + G I +E+AL + P ++A VVG
Sbjct: 318 IGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRPYLTALI 377
Query: 662 ------VEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRK------QIGAFAAPDK 707
+E + G+ F T + P L + V QI F K
Sbjct: 378 VLDPEALEKWAEQHGL-PFTTYADLAEDPEVRALIRKEVEEANARLARVEQIKKFVLLPK 436
Query: 708 IHWAPGLPKTRSGKIMRR 725
T + K+ RR
Sbjct: 437 EFSIEDGELTPTMKLRRR 454
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 129/550 (23%), Positives = 192/550 (34%), Gaps = 117/550 (21%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+LTY +LL L+ +K + K+G+ + I LP + +A LA G V V F
Sbjct: 7 SLTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKV--PVMLNF 63
Query: 292 --SSDSLAQRIMDCKPKVVITSNA------------VKRGPKAIHLKDIVDAALDECAKS 337
+ L K VITS A + G + ++L+D+ ++
Sbjct: 64 TAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDL---------RA 114
Query: 338 GIS-VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTS 396
IS D + +A +DP +L+TS
Sbjct: 115 KISKADKLKAF--LAAKLPPALLR--------------LFLAG----AKPDDPAVILFTS 154
Query: 397 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG-----HSY----V 447
GS G PKGV+ + + D DV + G H++
Sbjct: 155 GSEGLPKGVVLSHRNLL-ANIDQIAAVIDLNTEDV---------LLGALPLFHAFGLTVT 204
Query: 448 TYGPMLNGASVVVFEGAPTYPD--SGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
P+L G VV YP+ + +++ YK TI PT +R R
Sbjct: 205 LLLPLLTGLRVV------YYPNPLDAKKIAELIRDYKATILCGTPTFLRGYAR----NAH 254
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
SLR++ + E + + F G I + + TE + P K
Sbjct: 255 PEDFSSLRLVVAGAEKLPEATRELFEEKFG---IRILEGYGATECSPVISVNTPMG--NK 309
Query: 565 PGSATFPFFGVQPVIVDEKGVE--IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
PG+ P G++ IV + E GE G L ++ P + E+
Sbjct: 310 PGTVGRPLPGIEVRIVSPETHEELPIGE-GGLLLVRG--PNVMSGYLNNEEKTSEVE-VL 365
Query: 623 FPGYYFTGD-GCSSGH-------------RIG------TAEVESALVSH-PQCAEAAVVG 661
G+Y TGD G +IG TA VE L P+ + A V
Sbjct: 366 GDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTA-VEELLSEILPEDSLHAAVE 424
Query: 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
V E KG+ I T + P EEL L A + A P KI +P SGK
Sbjct: 425 VPDEKKGEKIVLLTTTEDLDP--EELNAILREA---GLPNLAVPRKILHVDEIPLLGSGK 479
Query: 722 IMRRILRKIA 731
R L+K+A
Sbjct: 480 TDYRGLKKLA 489
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-15
Identities = 64/300 (21%), Positives = 105/300 (35%), Gaps = 87/300 (29%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ +E D +++Y++L + + A++ GV KGD V + + E A
Sbjct: 51 PDRPALLFE------DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW 104
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L A++GAV +++ LA + N V K + IV L E
Sbjct: 105 LGLAKLGAVVALLNTQQRGAVLAHSL-----------NLVD--AKHL----IVGEELVEA 147
Query: 335 ---AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV---VPKYPTKCEVEW--VDA 386
A++ ++ L + +G ++D+ PT V A
Sbjct: 148 FEEARADLARPPRLWVAGG-----DTLDDPEG----YEDLAAAAAGAPTTNPASRSGVTA 198
Query: 387 EDPLFLLYTSGSTGKPKGVL--H----TTGGYMVHTATTFKYAFDYKPSDVYWCT----- 435
+D F +YTSG+TG PK + H G P DV +C
Sbjct: 199 KDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-------RLTPDDVLYCCLPLYH 251
Query: 436 ---ADCGWITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRS------WDIVDKYKVTIF 485
W +L GA++ + R WD V +Y+ T F
Sbjct: 252 NTGGTVAW---------SSVLAAGATLAL----------RRKFSASRFWDDVRRYRATAF 292
|
Length = 600 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 6e-15
Identities = 115/562 (20%), Positives = 202/562 (35%), Gaps = 78/562 (13%)
Query: 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPM 266
++ EAG D+ A Y V +T+ Q+ +L L++ G+ GD V++ LP
Sbjct: 12 EQASEAGWYDRPAFY----AADV---VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPD 64
Query: 267 LMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
+L +LAC G + + D A + +P +V+TS+A++ +
Sbjct: 65 SPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALR---DRFQPSRV 121
Query: 327 VDAA--LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
+AA + E A+ E +
Sbjct: 122 AEAAELMSEAARVAPG---------------------------------------GYEPM 142
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
+ + YTSG+TG PK +H + + A P D C+A + G
Sbjct: 143 GGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGL 202
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
+ P+ G S V+ AP P++ + ++ ++ Y P ++ + +
Sbjct: 203 GNSVWFPLATGGSAVI-NSAPVTPEAAAI--LSARFGPSVLYGVPNFFARVI----DSCS 255
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
S +SLR + S GE + G PI D TE G ++ W +
Sbjct: 256 PDSFRSLRCVVSAGEALELGLAERLMEFFGG--IPILDGIGSTEVGQTFVSNRVDEW--R 311
Query: 565 PGS--ATFPFFGVQPVIVD--EKGVEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETT 618
G+ P + ++ V D G +EG+ G K W + + +T
Sbjct: 312 LGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRP-DSPVANEGWLDTR 370
Query: 619 YFKPFPGYYFTGDGCSS-------GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGI 671
+ C + G + EVE ++ AEAAVV V +
Sbjct: 371 DRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTL 430
Query: 672 YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR-KI 730
AF+ G + + L + ++ AF P + LP+T +GK++R LR +
Sbjct: 431 QAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490
Query: 731 ASRQLDELGDTSTLAD-PGVVD 751
++ + EL T + D
Sbjct: 491 PTKPIWELSLTEPGSGVRAQRD 512
|
Length = 705 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 7e-15
Identities = 97/390 (24%), Positives = 135/390 (34%), Gaps = 80/390 (20%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHT-----ATTFKYAFDYKPSDVYWCTADCGWIT 442
DP F +YTSG+TG PK + M H F KP DV +
Sbjct: 82 DPAFYIYTSGTTGLPKAAI------MSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSN 135
Query: 443 GHSYVTYGPML-NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR---- 497
V + L GAS+ + + S + W V +Y T F L R L+
Sbjct: 136 A-LTVGWSSALAAGASLAL---RRKFSAS-QFWPDVRRYGATAFQYVGELCRYLLNQPEK 190
Query: 498 --DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT 555
D + + + LR P W F G R I + + TE G
Sbjct: 191 PDDRDHPLRKIIGNGLR----------PDIWDEFKERFGVPR--IVEFYGSTE-GNVGFI 237
Query: 556 PLPGAWPQKPGSATF-PFFGVQPVIVDEKGVEI----EGEC-------SGYLCIKSSWPG 603
L KPG+ P + V D + E G C G L + +
Sbjct: 238 NLFN----KPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRN 293
Query: 604 AFRTLYGDHERYE----TTYFKPFPGYYFTGDGCS---SGH-----RIG----------- 640
F Y D E E FK Y+ TGD G+ R+G
Sbjct: 294 PF-DGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVS 352
Query: 641 TAEVESALVSHPQCAEAAVVGVE-HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 699
T EVE L HP EA V GVE +G+ A +TL G + ++ + +Q+
Sbjct: 353 TTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDP---QAFAAHLDEQL 409
Query: 700 GAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
A+A P + + T + K + LRK
Sbjct: 410 PAYARPLFLRVQAAMETTGTFKYQKTDLRK 439
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 50/190 (26%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+Y ++ +QV LAN L++ GVK GD+V + LP + L +A+ A GA +
Sbjct: 481 RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDT 540
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK-SGISVDVCLTYE 348
G+ D L + D +P ++IT+ D+ + + + L Y
Sbjct: 541 GYPDDRLKMMLEDARPSLLITTA-------------------DQLPRFADVPDLTSLCYN 581
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
A Q P ++ ++++TSGSTG+PKGV
Sbjct: 582 APLAP---------------QGAAPLQLSQP-------HHTAYIIFTSGSTGRPKGV--- 616
Query: 409 TGGYMV-HTA 417
MV TA
Sbjct: 617 ----MVGQTA 622
|
Length = 1296 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 35/191 (18%)
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETT- 618
++PG P GV+ +VDE G + +GE G L ++ P F G R + T
Sbjct: 289 ERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRG--PTLFD---GYLNRPDATA 343
Query: 619 -YFKPFPGYYFTGDGC--------------------SSGHRIGTAEVESALVSHPQCAEA 657
F G++ TGD S G+RIG E+E+AL+ HP EA
Sbjct: 344 AAFTA-DGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREA 402
Query: 658 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717
AVVGV + GQ I A+V + V E L+ V +Q+ P ++ + LP+
Sbjct: 403 AVVGVPDDDLGQRIVAYVVGADDVAADE-----LIDFVAQQLSVHKRPREVRFVDALPRN 457
Query: 718 RSGKIMRRILR 728
GK++++ L
Sbjct: 458 AMGKVLKKQLL 468
|
Length = 471 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-14
Identities = 106/399 (26%), Positives = 141/399 (35%), Gaps = 105/399 (26%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV-HTA-TTFKYAFDYKPSDVYWCTADCGWI 441
D +D +++YTSGSTGKPKGV V H A F + +P A +
Sbjct: 90 TDPDDLAYVIYTSGSTGKPKGV-------EVSHRALVNFLLSMARRPG----LGASDRLL 138
Query: 442 TGHSYVT-----------YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
VT P+L+GA+VV+ A T D R ++ ++TI P
Sbjct: 139 A----VTTISFDISVLELLLPLLSGATVVI-ASAETVRDPERLARLIADERITIMQATPA 193
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP-----------SAWRWFFNVVGDSRCP 539
R L+ G R+SL L GE + W N+ G P
Sbjct: 194 TWRMLLAAGWR-----GRESLTAL-CGGEALPRDLAERLLSTGAELW----NMYG----P 239
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKP-GSATFPFFGVQPVIVDEKG--VEIEGECSGYLC 596
T W T + A G P Q ++DE V G G L
Sbjct: 240 TETTIWST------CARVTAADGPVTIGR---PIANTQVYVLDEDLQPVPP-GVP-GELY 288
Query: 597 IKSSWPGAFRTLYGDHERYETTYFK----PFPG----YYFTGDGCSS------------- 635
I G R G R E T + PF Y TGD
Sbjct: 289 IGG--DGVAR---GYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRAD 343
Query: 636 ------GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELR 688
G RI E+E+AL +HP A+A VV E Q + A+V G E LR
Sbjct: 344 DQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEALR 403
Query: 689 KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
+L R + A+ P LP T +GK+ R+ L
Sbjct: 404 AAL----RATLPAYMVPAAFVQLDELPLTPNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-14
Identities = 101/416 (24%), Positives = 149/416 (35%), Gaps = 113/416 (27%)
Query: 382 EWVDAEDPLF------------LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKP 428
EW+ D F + YTSG+TG PKGVL++ ++H A
Sbjct: 160 EWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSA 219
Query: 429 SDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
+D W A G V G L+GASV ++++
Sbjct: 220 ADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASV---------------YELL 264
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
D KVT PT+ L+ +Y+ + L L V V G S
Sbjct: 265 DTEKVTFTAGVPTVWLMLL----QYMEK-EGLKLPHLKMV--------------VCGGSA 305
Query: 538 CPIS-------------DTWWQTETGGF-MITPLPGAWPQKPGSAT--------FPFFGV 575
P S W TE + L + + PG A +P FGV
Sbjct: 306 MPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV 365
Query: 576 QPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
+ I D+ G E+ +G+ G L K P Y R + G++ TGD
Sbjct: 366 EMKITDDAGKELPWDGKTFGRL--KVRGPAVAAAYY----RVDGEILDD-DGFFDTGDVA 418
Query: 634 -------------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAF 674
S G I + ++E+ V HP+ AEAAV+GV H +
Sbjct: 419 TIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLI 478
Query: 675 VTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
V L G EE+ K + +I + PD + + +P T +GKI++ LR+
Sbjct: 479 VQLKPGETATREEILKYM----DGKIAKWWMPDDVAFVDAIPHTATGKILKTALRE 530
|
Length = 542 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 6e-14
Identities = 63/279 (22%), Positives = 105/279 (37%), Gaps = 34/279 (12%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ AI + + +TY++L + + A L+ GV GD V ++LP + I
Sbjct: 48 QRPAIIFYGH------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFF 101
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
++GAVH V F L+ + D +V++ + L +V+ E +
Sbjct: 102 GILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQ---------LAPVVEQVRAETS 152
Query: 336 KSGISV----DVCLTYEN--QSAMTRENTKWQDGRDIWWQDVVPKY---PTKCEVEWVDA 386
+ V DV R G D++P +
Sbjct: 153 LRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAG----AIDLLPALRACTAPVPLPPPAL 208
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADCGWITGHS 445
+ L YT G+TG PKG HT MV+TA A V+ WI G +
Sbjct: 209 DALAALNYTGGTTGMPKGCEHTQ-RDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGEN 267
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 484
+ P+ +GA++V+ D+ V++Y+VT
Sbjct: 268 FGLLFPLFSGATLVLL----ARWDAVAFMAAVERYRVTR 302
|
Length = 567 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 8e-14
Identities = 120/547 (21%), Positives = 181/547 (33%), Gaps = 110/547 (20%)
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281
DP LTYS+L +V +A L GV+ V + P ++ IA+LA R+G
Sbjct: 18 CALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLG 77
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
AV + +M+ + K + +KRG + I A A
Sbjct: 78 AVPA--------------LMNPRLKPAEIAELIKRG--EMTAAVIAVDAQVMDAIFQSGS 121
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
V + E P E E P F+ YTSG+TG
Sbjct: 122 GVRVLALGDLVGLGEP----------ESAGPPIEDPPRE-----PEQPAFVFYTSGTTGL 166
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM--------- 452
PKG + + A S V + + G G V G M
Sbjct: 167 PKGAV------IPQRAAE---------SRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFF 211
Query: 453 --------LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
L+G VVV E P + ++++ +VT + PT + +L
Sbjct: 212 AVLVAALALDGTYVVVEEFDP-----ADALKLIEQERVTSLFATPTHLDALA--AAAEGA 264
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
SL + G + + + + + TE + P +
Sbjct: 265 PLKLDSLEHVTFAGATMPDAVLERVNQHL---PGEKVNIYGTTEAMNSLYMRDP-----R 316
Query: 565 PGSATFP-FFG-VQPVIVDEKGVEI--EGECSGYLCIK-SSWPGAFRTLYGDHERYETTY 619
G+ P FF V+ V + E GE G L + + T G + + T
Sbjct: 317 TGTEMRPGFFSEVRIVRIGGSPDEALPNGE-EGELVVAAADA-----TFTGYLNQPQATA 370
Query: 620 FKPFPGYYFTGD-GC------------------SSGHRIGTAEVESALVSHPQCAEAAVV 660
K G+Y T D S G I +EVE L P E V+
Sbjct: 371 EKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVI 430
Query: 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 720
G+ E GQ + A V EG S + + A ++ F P + + LPK
Sbjct: 431 GLPDERWGQSVTACVVPREGETLSADALDTFCRA--SELADFKRPRRYFFLDELPKNAMN 488
Query: 721 KIMRRIL 727
K++RR L
Sbjct: 489 KVLRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 9e-14
Identities = 116/553 (20%), Positives = 206/553 (37%), Gaps = 145/553 (26%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
TL Y++L ++ +LA+ L + GV V + + +E+ +A+LA + G + + +
Sbjct: 536 TLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEY 595
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
++ LA + D +++++ + HL + A +G+ V + L
Sbjct: 596 PAERLAYMLEDSGVQLLLSQS---------HLGRKLPLA------AGVQV-LDL------ 633
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG- 410
D W + Y + ++ E+ +++YTSGSTGKPKG +
Sbjct: 634 ----------DRPAAW----LEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 411 ----------------GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
G V T F +FD + +W P+++
Sbjct: 680 LSNRLCWMQQAYGLGVGDTVLQKTPF--SFDVSVWEFFW-----------------PLMS 720
Query: 455 GASVVVFEGAPTYPDSGRS----WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510
GA +VV A P R +++++ V + P+++++ ++D + S S
Sbjct: 721 GARLVV---AA--PGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV----ASCTS 771
Query: 511 LRVLGSVGEPINPSAW------RW---FFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
LR + GE + A +N+ G + I T W G P+ G
Sbjct: 772 LRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPI-GR- 829
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYG----DHERYET 617
P + I+D + G L + G R +G ER+
Sbjct: 830 ---------PIANLACYILDANLEPVPVGVLGELYLAGR--GLARGYHGRPGLTAERFVP 878
Query: 618 TYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAA 658
+ F Y TGD G RI E+E+ L+ HP EAA
Sbjct: 879 SPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAA 938
Query: 659 VVGVEHEVKGQGIYAFVTLVEGVPYSE--ELRKSLVLAVRKQIGAFAAPDKIHWAP--GL 714
V+ V+ G+ + +V V SE + R++L + + + P W L
Sbjct: 939 VLAVD----GKQLVGYV-----VLESEGGDWREALKAHLAASLPEYMVPA--QWLALERL 987
Query: 715 PKTRSGKIMRRIL 727
P T +GK+ R+ L
Sbjct: 988 PLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
S G I + EVE L HP EAAVV E G+ AFV L G +EE L+
Sbjct: 429 SGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEE---ELIE 485
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
R+++ F P + + LPKT +GKI + +LR+
Sbjct: 486 YCREKLAHFKVPKTVEFVE-LPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-13
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y +L + + AN L +GV KG+ V LP EL +A L ++GAV+ +F+ F
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKR 316
+ + R+ + KV+IT+ +
Sbjct: 61 PEPIRDRLELGEAKVLITTPELYE 84
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
L+Y++L +Q ++AN L D+GVK GD V LP EL +A+LA R+GA++ +F F
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRG 317
++ R+ KVV+T NA RG
Sbjct: 61 PKAIEYRLGHSGAKVVVT-NAANRG 84
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 8e-13
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY++L + + A YL+ +GVKKGD V + LP + PIA + GAV V
Sbjct: 22 GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNP 81
Query: 290 GFSSDSLAQRIMDCKPKVVIT 310
++ L ++ D KV+I
Sbjct: 82 LYTPRELEHQLNDSGAKVLIV 102
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 105/507 (20%), Positives = 181/507 (35%), Gaps = 108/507 (21%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T++Q+ Q ++A L+ +G++ GD + I E IA LA G V ++ ++
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD--ECAKSGISVDVCL-TYENQ 350
+++ + K + LD + K+G+ +
Sbjct: 68 ETIRYVLEHSDAKALFV------------------GKLDDWDAMKAGVPEGLPTIILFPY 109
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
S + W D++ + ED ++YTSG+TG+PKGV+ + G
Sbjct: 110 STLKDHYK---------WDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFG 160
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470
A P+D I V G + +GA V E T+
Sbjct: 161 A-FAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLDTFAAD 219
Query: 471 GRSWDIVDKYKVTIFYTAPTL-------VRSLMRDG-----------NEYVTRYSRKSL- 511
+ + + T+F++ P L + + + + V + K L
Sbjct: 220 ------LQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLG 273
Query: 512 ----RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS 567
R+ GS P+ P+ W+ +G PI + + TE + PG ++ G+
Sbjct: 274 LDQARLAGSGAAPMPPALIAWYRK-LG---LPICEGYGMTENFAYSTLNYPGD--RRIGT 327
Query: 568 ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
P GV+ I + +GE + I+S PG Y D E+ + + G+
Sbjct: 328 VGKPIPGVELKISE------DGE----ILIRS--PGLMSGYYKDPEKTAEAFTE--DGWL 373
Query: 628 FTGD-------GC-------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVK 667
TGD G S G + A +E+ L ++P + VVG
Sbjct: 374 HTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVGS----- 428
Query: 668 GQG-IYAFVTLVEGVP--YSEELRKSL 691
G A V L E EE+ +SL
Sbjct: 429 GLPQPVALVVLSEAADPLEREEVEESL 455
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 34/217 (15%)
Query: 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598
P+ ++ TET ++T P K GSA P F + I + V E G + +K
Sbjct: 280 PVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFE-EGEIVVK 338
Query: 599 SS--WPGAFRTLYGDHERYETTYFKPFPGYYFTGD-GC------------------SSGH 637
G R + T G++ TGD G S G
Sbjct: 339 GPNVTKGYLN-------REDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGE 391
Query: 638 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK 697
I AE+E L+SHP AEA VVGV + GQ AFV V+ +EE L +
Sbjct: 392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFV--VKSGEVTEE---ELRHFCEE 446
Query: 698 QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734
++ + P + ++ LP+ SGK++R L+++
Sbjct: 447 KLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEEM 483
|
Length = 483 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-12
Identities = 138/535 (25%), Positives = 203/535 (37%), Gaps = 73/535 (13%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVV 287
D +TY++L A L G K +V +YL + PI + GA VH
Sbjct: 44 DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSP 103
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
G +L+ ++ D +++ITS+ P A LK + LD VC
Sbjct: 104 LDG--ERALSHKLSDSGARLLITSDLAALLPMA--LKFLEKGLLDRLI-------VCEDD 152
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
T + D R + + D V E V +D L YT G+TG PKG +
Sbjct: 153 NWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAML 212
Query: 408 TTGGYMVHTATTFKYAFDYKPS-----DVY--WCTADCGWITGHSYVTYGPMLNGASVVV 460
T G T+ Y KPS DV C I + + + G + +
Sbjct: 213 THGNL---TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISL 269
Query: 461 ---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517
F+ A + D +++ + T+F PT+ +L D + + + SL +GS
Sbjct: 270 HQRFDVAAVFRD-------IEEKRATVFPGVPTMWIALANDPS--LEKRDLSSLATIGSG 320
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQP 577
G P+ +F G + W TET T P P KPGS G++
Sbjct: 321 GAPLPVEVANFFERKTGLK---LKSGWGMTETCS-PGTGHPPEGPDKPGSIGLMLPGIEL 376
Query: 578 VIV---DEKGVEIEGECS-----------GYLCIKSSWPGAF---RTLYGDHERYETTYF 620
+V D V GE GY AF R L GD +T
Sbjct: 377 DVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTD-- 434
Query: 621 KPFPGYYFTGDG-----CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFV 675
GY+F D S G + +E A+ HP E V+G+ + +G+ AFV
Sbjct: 435 ----GYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFV 490
Query: 676 TLVEGV-PYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
L G P+S +ELR L ++G P + + LP+T GK+ R LR
Sbjct: 491 KLRPGAKPFSLDELRAFL----AGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 37/295 (12%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
TY+ + ++A L +G+++GD V++ LP E +A L +R GAV +
Sbjct: 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPF 108
Query: 291 FSSDSLAQRIMDCKPKVVIT-SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A++ K++IT S V + + +D+ + CL +
Sbjct: 109 YTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDD------PPEGCLHF-- 160
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
S +T+ + ++ +P EVE + +D + L Y+SG+TG PKGV+ T
Sbjct: 161 -SELTQAD-----------ENELP------EVE-ISPDDVVALPYSSGTTGLPKGVMLTH 201
Query: 410 GGYMVHTATTFKYA---FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPT 466
G + A + DV C I + V + GA++++ P
Sbjct: 202 KGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIM---PK 258
Query: 467 YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
+ + G +++ ++KVTI P +V ++ + + V +Y S+R++ S P+
Sbjct: 259 F-EIGALLELIQRHKVTIAPFVPPIVLAIAK--SPVVEKYDLSSIRMVLSGAAPL 310
|
Length = 537 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 4e-12
Identities = 109/543 (20%), Positives = 207/543 (38%), Gaps = 105/543 (19%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY ++++ + A L+ +G++KG V++ LP + E I L G V F+G
Sbjct: 55 AVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV----FSGA 110
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE--N 349
+ +L I K+ +A K IV + G+ + V + E
Sbjct: 111 NPTALESEI--------------KKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKI 156
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ A+ W++ + + + E + D L ++SG+TG KGV+ T
Sbjct: 157 EGAVN-----WKE-----LLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTH 206
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT-----GHSYVTYGPMLNGASVVVFEGA 464
+ + ++ F P + G I G + + + N VVV
Sbjct: 207 RNLVANLCSSL---FSVGPEMIGQVVT-LGLIPFFHIYGITGICCATLRNKGKVVV---- 258
Query: 465 PTYPDSGRSWDIVDKYKVTIFYTA------------PTLVRSLMRDGNEYVTRYSRKSLR 512
+ ++++ F A P ++ +L+++ S+ L+
Sbjct: 259 ------------MSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQ 306
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCP---ISDTWWQTETGGFMIT---PLPGAWPQKPG 566
+ + P+ P F +++ P + + + TE +T P G K
Sbjct: 307 AIMTAAAPLAPELLTAF-----EAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKN 361
Query: 567 SATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625
S F ++ +D + G + G LC++S + Y + E + T + G
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQC--VMQGYYNNKEETDRTIDED--G 417
Query: 626 YYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEV 666
+ TGD G ++ AE+E+ L++HP +AAVV + E
Sbjct: 418 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEE 477
Query: 667 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 726
G+ A V + SEE ++ V + + + + +PK+ SGKIMRR+
Sbjct: 478 AGEIPAACVVINPKAKESEE---DILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRL 534
Query: 727 LRK 729
L++
Sbjct: 535 LKE 537
|
Length = 546 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 5e-12
Identities = 101/534 (18%), Positives = 198/534 (37%), Gaps = 95/534 (17%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ L+Y++L ++ +LA+ L + GV V + + +E+ + +LA + G + +
Sbjct: 3080 EQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDP 3139
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
+ + LA + D +++++ + ++ +D + A++ ++
Sbjct: 3140 EYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGDENYAEANPAIRT------ 3193
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
E+ +++YTSGSTGKPKGV
Sbjct: 3194 -----------------------------------MPENLAYVIYTSGSTGKPKGVGIRH 3218
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
H + A+ D + + P+++GA VV+ G + D
Sbjct: 3219 SALSNHLCWMQQ-AYGLGVGDRVLQFTTFSF-DVFVEELFWPLMSGARVVL-AGPEDWRD 3275
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS-AWRW 528
++++ V + S+++ E + SL+ + GE + +
Sbjct: 3276 PALLVELINSEGVDV----LHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQV 3331
Query: 529 F-----FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK 583
F +N+ G + I+ T WQ G P+ + + ++PV V
Sbjct: 3332 FAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR--ACYILDGSLEPVPVGAL 3389
Query: 584 G---VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------ 634
G + EG GY + PG ER+ F P Y TGD
Sbjct: 3390 GELYLGGEGLARGYH----NRPGL------TAERFVPDPFVPGERLYRTGDLARYRADGV 3439
Query: 635 -------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 681
G RI E+E+ L+ HP EA V+ V+ G+ + A+V +
Sbjct: 3440 IEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVPEDEA 3495
Query: 682 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735
+LR++L ++ + + P + + +P T +GK+ R+ L + + L
Sbjct: 3496 G---DLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALL 3546
|
Length = 5163 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-12
Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 55/299 (18%)
Query: 219 AIYWEANDPGVDA--------TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLME 269
I+ N G A +++YS+L V +A L +GV++GD V++ LP +
Sbjct: 45 FIFSHHNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVY 104
Query: 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS--NAVKRGPKAIHLKDIV 327
P+ LA +G + + + S + +R++DC + TS N K P
Sbjct: 105 FPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP--------- 155
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQ-----DVVPKYPTKCEVE 382
+ V V EN ++K + + D VPK
Sbjct: 156 -----------LGVPVIGVPENYD----FDSKRIEFPKFYELIKEDFDFVPKPV------ 194
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGY--MVHTATTFKYA-FDYKPSD-VYWCTADC 438
+ +D ++Y+SG+TG KGV+ T MV F+ + ++Y SD VY
Sbjct: 195 -IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
I G S G + G+++VV D+ ++D++KVT F P ++ +L +
Sbjct: 254 FHIYGLSLFVVGLLSLGSTIVVMRRF----DASDMVKVIDRFKVTHFPVVPPILMALTK 308
|
Length = 560 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+++L ++ + AN+LKD+GV +GD V + LP + EL +L C ++GAV
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 294 DSLAQRIMDCKPKVVITS 311
+ R+ + ++TS
Sbjct: 62 KDIRYRLERAGARAIVTS 79
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-11
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
S G I + EVE L HP AAVV G+ AFV L +G +EE ++
Sbjct: 444 SGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEE---EIIA 500
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731
R+ + F P + + LPKT +GKI + +LR+ A
Sbjct: 501 HCREHLAGFKVPKAVVFGE-LPKTSTGKIQKFVLREQA 537
|
Length = 545 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-11
Identities = 69/333 (20%), Positives = 135/333 (40%), Gaps = 73/333 (21%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTY +L ++ +LA+ L +GV V I + +E+ + +LA + G + + +
Sbjct: 1600 LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYP 1659
Query: 293 SDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+ LA I D ++++T + + R P L+ +V D+
Sbjct: 1660 RERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQEDD------------------ 1701
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG 411
W +G + V + ++ +++YTSGSTG+PKG + G
Sbjct: 1702 --------WLEGYS----------DSNPAVN-LAPQNLAYVIYTSGSTGRPKGAGNRHGA 1742
Query: 412 YMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEGA 464
+ T + A+ +DV + S+ + P++NGA +V+ A
Sbjct: 1743 LVNRLCAT-QEAYQLSAADV--------VLQFTSFAFDVSVWELFWPLINGARLVI---A 1790
Query: 465 P--TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR-KSLRVLGSVGEPI 521
P + D + ++++ +VT + P++++ L+ + + SLR + GE +
Sbjct: 1791 PPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL----QMDEQVEHPLSLRRVVCGGEAL 1846
Query: 522 NPSAWR-WF--------FNVVGDSRCPISDTWW 545
A R W FN+ G + + T W
Sbjct: 1847 EVEALRPWLERLPDTGLFNLYGPTETAVDVTHW 1879
|
Length = 3956 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+ QL +LAN L+++GV++GD V +YLP E IA LA ++GAV + F
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 294 DSLAQRIMDCKPKVVITSNA 313
D++ R+ D +V++T +
Sbjct: 68 DAVEHRLRDSGARVLVTDGS 87
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 98/447 (21%), Positives = 149/447 (33%), Gaps = 102/447 (22%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+Y++LL++ ++ L+ +G+K GD+VI+ L + A AC V GF
Sbjct: 39 FQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWAC---------VLGGF 89
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+A P NA K + + L V LT
Sbjct: 90 VPVPVA------VPPTYDEPNAAVA--KLRN----IWELLGSP--------VILTDAALV 129
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLHTT 409
A + + + +DP LL TSGSTG PK V+ T
Sbjct: 130 AALAGLRTRAGLEALRVLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTH 189
Query: 410 GGYMVHTATTFKYAFDYKPSDVY--WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
+ +A T + + P DV W D + G + + G +
Sbjct: 190 RNILARSAGTVQVN-GFTPDDVSLNWMPLD--HVGGIVMLHLRDVYLGCQQIHVPTDYIL 246
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT--RYSRKSLRVLGSVGEPINPSA 525
D R D++D+Y+VTI + AP +L+ D E + + SLR + + GE +
Sbjct: 247 ADPLRWLDLIDRYRVTITW-APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKT 305
Query: 526 WRWF------FNVVGDSRCPISDTWWQTETGGFMI--------------------TPLPG 559
R F + + D+ P + +ET + PL
Sbjct: 306 IRRFLELLAPYGLPADAIRP---AFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRF 362
Query: 560 AWPQKPGSATF-----PFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHER 614
A P + TF P GV IVDE G + G L ++
Sbjct: 363 AAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRG--------------- 407
Query: 615 YETTYFKPFPGYY---------FTGDG 632
T GYY FT DG
Sbjct: 408 -PTV----TSGYYRNPEANAEAFTEDG 429
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 5e-11
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D VA+ + D +LTY +L ++ +LA+YL+ GV GD V I L E+ +A+L
Sbjct: 2 DAVAVVFG------DQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAIL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A + GA + + + ++ LA + D K+++T
Sbjct: 56 AVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLT 90
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 7e-11
Identities = 121/569 (21%), Positives = 199/569 (34%), Gaps = 123/569 (21%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVII-------YLPMLMELPIAMLACARIGAVHS 285
T + + V LA L +G++ GD V I YL +LA A G + +
Sbjct: 33 RTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEW-------LLAVACAGGIVA 85
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-----DECAKSGIS 340
+ +S + ++ +P +++T + + + + I
Sbjct: 86 PLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF 145
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
++ LT E + + + W +D + + +TSG+TG
Sbjct: 146 LNSFLTTEM----------------LKQRALGTTELDYA---WA-PDDAVLICFTSGTTG 185
Query: 401 KPKGVLHTTGGYMVHTATTF----KYAF-DYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
+PKGV + H+A K A Y DVY TA I G S M+
Sbjct: 186 RPKGVTIS------HSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGA 239
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL- 514
V++ P + D+ + + ++ VT T P ++ L+ + +T S+R +
Sbjct: 240 CHVLL----PKF-DAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKIL 294
Query: 515 ---GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG---FMITPLPGAWPQKPGSA 568
GS+ + P A + F + + TE FM L + P
Sbjct: 295 NGGGSLSSRLLPDAKKLF------PNAKLFSAYGMTEACSSLTFM--TLHDPTLESPKQT 346
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSG----YLCIKSSWPGAFRT----LYGDH--ERY--- 615
+ V + G C G ++ +K + R G H Y
Sbjct: 347 LQTVNQTKSSSVHQPQ----GVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQ 402
Query: 616 --ETTYFKPFPGYYFTGD-------------GCSSGHRIGTA-------EVESALVSHPQ 653
ET G+ TGD G S+ RI T EVE+ L HP
Sbjct: 403 NSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSND-RIKTGGENVYPEEVEAVLSQHPG 461
Query: 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----EELRKSLVLA-------VRKQ-IGA 701
A VVGV + + A V L +G +S E +K+L L+ R++ +
Sbjct: 462 VASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSR 521
Query: 702 FAAPDKI-HWAPGLPKTRSGKIMRRILRK 729
F P W P T +GKI R +R+
Sbjct: 522 FKIPKLFVQWRKPFPLTTTGKIRRDEVRR 550
|
Length = 563 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-10
Identities = 114/570 (20%), Positives = 208/570 (36%), Gaps = 101/570 (17%)
Query: 199 TNICYNCLDRNIEAGLG---DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVK 255
T +C+ + IEA ++ A+ + + L+Y++L +Q +LA+ L GV
Sbjct: 507 TEYAPDCVHQLIEAQARQHPERPALVFG------EQVLSYAELNRQANRLAHVLIAAGVG 560
Query: 256 KGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT-SNAV 314
V I + +E+ + +LA + G + + + D LA + D ++++T S+ +
Sbjct: 561 PDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLL 620
Query: 315 KRGPKAIHLKDIV-DAALDE-CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372
+ P L+ + D D C SG + +V L +N +
Sbjct: 621 AQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPDNLA--------------------- 659
Query: 373 PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG---YMVHTATTFKYAFDYKPS 429
+++YTSGSTG+PKGV + G Y+ A + A D
Sbjct: 660 ------------------YVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSML 701
Query: 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAP 489
V D G +G + +GA++ + D+ ++ VT+ P
Sbjct: 702 MVSTFAFDLG-----VTELFGALASGATLHLL-PPDCARDAEAFAALMADQGVTVLKIVP 755
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF------FNVVGDSRCPISDT 543
+ +++L++ + R +++L G + + R N G + + +
Sbjct: 756 SHLQALLQASRVALPR-PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVS 814
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFG-VQPVIVDEKG---VEIEGECSGY----- 594
++ +P P + + PV V G + G GY
Sbjct: 815 TYELSDEERDFGNVPIGQPL-ANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPA 873
Query: 595 ------LCIKSSWPGA--FRTLYGDHERYETTYFKPFPGYYFTGDGCSS--GHRIGTAEV 644
+ G +RT GD RY + G D G RI E+
Sbjct: 874 LTAERFVPDPFGADGGRLYRT--GDLARYRADGVIEYLGRM---DHQVKIRGFRIELGEI 928
Query: 645 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV-----EGVPYSEELRKSLVLAVRKQI 699
E+ L++ P EA V+ + Q + V E +EL+ L R+ +
Sbjct: 929 EARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELKAQL----RQVL 984
Query: 700 GAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+ P + LP T +GK+ R+ L K
Sbjct: 985 PDYMVPAHLLLLDSLPLTPNGKLDRKALPK 1014
|
Length = 3956 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D +A+ + D TL+Y++L ++ QLA L+ +GV GD V + L +L A+L
Sbjct: 2 DAIALRDD------DRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A + GA + + + ++ L + D +P +++T
Sbjct: 56 AILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT 90
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEE--LRKSL 691
S G I + EVE+ + +HP EA+VV E G+ AFVTL GV S+E L + +
Sbjct: 458 SGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDI 517
Query: 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731
+ R+++ A+ P + + P LPKT +GKI + +LR A
Sbjct: 518 MKFCRERLPAYWVPKSVVFGP-LPKTATGKIQKHVLRAKA 556
|
Length = 567 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 129/562 (22%), Positives = 198/562 (35%), Gaps = 155/562 (27%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D T+ +L + ++AN+ + G + GD V +++ +E L A+IG +++ +
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
+SL I K K +I + L ++ + E
Sbjct: 61 NLRLESLLHCITVSKAKALIFN----------LLDPLLTQSSTE---------------- 94
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
P + V+ D LF +YTSG+TG PK +
Sbjct: 95 --------------------------PPSQDD--VNFRDKLFYIYTSGTTGLPKAAVIVH 126
Query: 410 GGYMVHTATTFKYAFDYKPSDV-YWC-----TADCGWITGHSYVTYGPMLNGASVVV--- 460
Y A + YAF +P DV Y C +A G I G +L+G++VV+
Sbjct: 127 SRYYRIAAGAY-YAFGMRPEDVVYDCLPLYHSA--GGIMGVGQA----LLHGSTVVIRKK 179
Query: 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
F + WD KY TI + R L+ + + +K V +VG
Sbjct: 180 FSAS-------NFWDDCVKYNCTIVQYIGEICRYLL---AQPPSEEEQKH-NVRLAVGNG 228
Query: 521 INPSAWRWF---FNV------VGDSRCPISDTWWQTETG--GFMITPLPGAWPQKPGSAT 569
+ P W F F + G + S G GF LP +P
Sbjct: 229 LRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRILPSVYP------- 281
Query: 570 FPFFGVQPVIVDEKGVEIEGECSGYLCI--KSSWPGAF----------RTLYG------D 611
++ + VDE E+ + G LCI + PG R G
Sbjct: 282 -----IRLIKVDEDTGELIRDSDG-LCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEGAT 335
Query: 612 HERYETTYFKPFP--------------GY-YF---TGDGCS-SGHRIGTAEVESALVSHP 652
+++ FK GY YF TGD G + T EVE L +
Sbjct: 336 NKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSNVL 395
Query: 653 QCAEAAVVGVE-HEVKGQ-GIYAFVTLVEGVP---YSEELRKSLVLAVRKQIGAFAAPDK 707
+ V GVE V+G+ G+ A V V +S L KSL +A P
Sbjct: 396 GLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDLDRFSAVLAKSLP--------PYARPQF 447
Query: 708 IHWAPGLPKTRSGKIMRRILRK 729
I P + KT + K+ + L+K
Sbjct: 448 IRLLPEVDKTGTFKLQKTDLQK 469
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 4e-10
Identities = 47/292 (16%), Positives = 85/292 (29%), Gaps = 32/292 (10%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TY+++ Q+ +L L+ +GV GD V A A +GAV
Sbjct: 22 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANP 81
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
S +A + + KV+ + D L ++ +
Sbjct: 82 RLSPKEIAYILNHAEDKVL-----------------LFDPNLLPLVEAIRGELKTVQ-HF 123
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT- 408
+ K +G + + V + YT+G+TG PKGV+++
Sbjct: 124 VV----MDEKAPEGYLA----YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSH 175
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468
+ A + DV + ++ V+
Sbjct: 176 RALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP----RL 231
Query: 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
D ++ D VT PT V + D E + R++
Sbjct: 232 DPASLVELFDGEGVTFTAGVPT-VWLALADYLESTGHRLKTLRRLVVGGSAA 282
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 6e-10
Identities = 57/215 (26%), Positives = 83/215 (38%), Gaps = 40/215 (18%)
Query: 545 WQTETG-----GFMIT---PLPGAWP----QKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
W TG G+ +T PL P GS P + +VD+ G E+
Sbjct: 345 WVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP 404
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------ 634
G L +K + + G +R E T G+ TGD
Sbjct: 405 GELWVKGP-----QVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMIL 459
Query: 635 -SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
SG + E+E ++ HP+ E A VGV EV G+ + FV + EEL
Sbjct: 460 VSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITH--- 516
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
R+ + + P + + LPK+ GKI+RR LR
Sbjct: 517 -CRRHLTGYKVPKLVEFRDELPKSNVGKILRRELR 550
|
Length = 560 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TY++L ++V +LA L +GV+ GD V + L E A A ++GAV +
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60
Query: 290 GFSSDSLAQRIMDCKPKVVITSNA 313
+ LA + ++++ A
Sbjct: 61 ALRGEELAHILDHSGARLIVVDTA 84
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
G ++ AE+E+ L+SHP A+AAVV ++ EV G+ AFV G +E+ K V
Sbjct: 442 GFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQF---V 498
Query: 696 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
KQ+ + K+ + +PK SGKI+R+ LR
Sbjct: 499 AKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRA 532
|
Length = 537 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 51/197 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ AI +E + +T+ +L + V +A L +GVKKGD V + + ME+ + +
Sbjct: 17 DRTAIEFE------EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIH 70
Query: 276 ACARIGAVHSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
A ++GAV V S + L ++ D + K +IT D +A L
Sbjct: 71 ALQQLGAV--AVLLNTRLSREELLWQLDDAEVKCLITD-------------DDFEAKLIP 115
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
GISV + +E + Q E D ++ ++
Sbjct: 116 ----GISVK----FAELMNGPKEEAEIQ--------------------EEFDLDEVATIM 147
Query: 394 YTSGSTGKPKGVLHTTG 410
YTSG+TGKPKGV+ T G
Sbjct: 148 YTSGTTGKPKGVIQTYG 164
|
Length = 483 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 91/393 (23%), Positives = 138/393 (35%), Gaps = 85/393 (21%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD------ 437
D +D L++TSG++G PK V T + F P DV + +
Sbjct: 149 ADPDDLFMLIFTSGTSGDPKAVR-CTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNA 207
Query: 438 --CGWITGHSYVTYGPMLNGASVVV---FEGAPTYPDSGRSWDIVDKYKVTIF------- 485
GW + GAS+ + F + PD V +Y T
Sbjct: 208 VMAGWAVA--------LAAGASIALRRKFSASGFLPD-------VRRYGATYANYVGKPL 252
Query: 486 -YTAPTLVRSLMRDGNEYVTRYSRKSLRVL-GSVGEPINPSAWRWFFNVVGDSRCPISDT 543
Y T R D LR++ G+ G P + + + F C + D
Sbjct: 253 SYVLATPERPDDAD----------NPLRIVYGNEGAPGDIARFARRFG------CVVVDG 296
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ-----------PVIVDEKGVEIEGECS 592
+ TE GG IT P PG+ GV P + + E
Sbjct: 297 FGSTE-GGVAITRTPDT---PPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAI 352
Query: 593 GYLCIKSSWPGAFRTLYGDHE---------RYET--TYFKPFPGY-YFTGDGCS----SG 636
G L + ++ PG F Y D E Y + ++ GY YF G G
Sbjct: 353 GEL-VNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDG 411
Query: 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVR 696
+GTA +E L+ +P E AV V V G + A + L G + + + LA +
Sbjct: 412 ENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPD-AFAEFLAAQ 470
Query: 697 KQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+G P + LP+T + K+++R L
Sbjct: 471 PDLGPKQWPSYVRVCAELPRTATFKVLKRQLSA 503
|
Length = 529 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 127/567 (22%), Positives = 217/567 (38%), Gaps = 145/567 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+++A+ W+ +L Y++L Q +LA+YL+D GV V I +L + +L
Sbjct: 1146 ERIALVWDG------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDEC 334
A + G + + + ++ LA + D ++++T + + +R P+A + I ALD
Sbjct: 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAI---ALDS- 1255
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L ++ +P++ + ++ +++Y
Sbjct: 1256 ----------LHLDS-------------------------WPSQAPGLHLHGDNLAYVIY 1280
Query: 395 TSGSTGKPKGVLHTTGG------YMVHTATTFKYAFDYKPSDVYWCTA---------DCG 439
TSGSTG+PKGV +T +M T YA D SDV A +C
Sbjct: 1281 TSGSTGQPKGVGNTHAALAERLQWMQAT-----YALD--DSDVLMQKAPISFDVSVWECF 1333
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
W P++ G +V+ G + D R ++V +Y VT + P L++ + +
Sbjct: 1334 W----------PLITGCRLVL-AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWR----------WFFNVVGDSRCPISDTWWQTET 549
SLR L S GE + P+ R N G + I+ T WQ +
Sbjct: 1383 LAAACT----SLRRLFSGGEAL-PAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQA 1437
Query: 550 GGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY 609
+P+ G P V ++D + + +G LCI + G R
Sbjct: 1438 EDGERSPI--------GR---PLGNVLCRVLDAELNLLPPGVAGELCIGGA--GLARGYL 1484
Query: 610 G----DHERYETTYFKPFPG------YYFTGDGCS-------------------SGHRIG 640
G ER F P P Y TGD G R+
Sbjct: 1485 GRPALTAER-----FVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVE 1539
Query: 641 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 700
E+++ L++ P A+AAV+ V G + + T G E + L A+ ++
Sbjct: 1540 PEEIQARLLAQPGVAQAAVL-VREGAAGAQLVGYYTGEAG---QEAEAERLKAALAAELP 1595
Query: 701 AFAAPDKIHWAPGLPKTRSGKIMRRIL 727
+ P ++ +P SGK+ RR L
Sbjct: 1596 EYMVPAQLIRLDQMPLGPSGKLDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ +LTY +L + AN L+ +GV GD V++ LP EL A LAC + GAV +
Sbjct: 8 EQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNP 67
Query: 290 GFSSDSLAQRIMDCKPKVVITS 311
+ L + D +++T
Sbjct: 68 LLTPQDLEHILDDSGAALLVTE 89
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 7e-09
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 24/231 (10%)
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG-GFMITPLP-GAWPQKPGSA 568
LRV+ S G+ ++P+ + F + GD + + + TE G G + TP P+ G
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDI---LYNGYGSTEVGIGALATPADLRDAPETVGK- 349
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCI-------KSSWPGAFRTLYGDHERYETTYFK 621
P G I+D + +G + + + + G + G + Y
Sbjct: 350 --PVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLD 407
Query: 622 PFPGYYFTGDG----CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677
+ G S G + VE+AL +HP A+ AV+GV E G + AFV L
Sbjct: 408 NAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVL 467
Query: 678 VEGVPY-SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
G + +LR L + ++ F P I+ +P+ +GK++R+ L
Sbjct: 468 HPGSGVDAAQLRDYL----KDRVSRFEQPRDINIVSSIPRNPTGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 86/373 (23%), Positives = 126/373 (33%), Gaps = 60/373 (16%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYM--VHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
D +++T G+TG PK V T V T + P D A GH
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIIT---GYRLSPRDA--TVAVMPLYHGH- 230
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRS-----WDIVDKYKVTIFYTAPTLVRSLMRDGN 500
G + + + GA P GR WD + T + PT+ + L+
Sbjct: 231 ----GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAA 286
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET---------GG 551
+ +LR + S P+ + P+ + TE G
Sbjct: 287 TEPSGRKPAALRFIRSCSAPLTAETAQALQTEFA---APVVCAFGMTEATHQVTTTQIEG 343
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
T P G +T G Q IV G+ + G + ++ R GD
Sbjct: 344 IGQTENPVVSTGLVGRST----GAQIRIVGSDGLPLPAGAVGEVWLRG--TTVVRGYLGD 397
Query: 612 HERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHP 652
+ G+ TGD S G +I VE L SHP
Sbjct: 398 PTITAANFTD---GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHP 454
Query: 653 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 712
EAAV GV ++ G+ + A + E P + + LV R+++ AF P A
Sbjct: 455 NVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT---AEELVQFCRERLAAFEIPASFQEAS 511
Query: 713 GLPKTRSGKIMRR 725
GLP T G + RR
Sbjct: 512 GLPHTAKGSLDRR 524
|
Length = 534 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D VA+ + D +LTY++L ++ +LA++L +GV+ GD V + L L +A+L
Sbjct: 7 DAVAVDF------WDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
A + GA + + + L I D VV+TS
Sbjct: 61 AVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTS 96
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 72/357 (20%), Positives = 128/357 (35%), Gaps = 84/357 (23%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
L++++L + +A+ L G+ +G ++ + +E A + GAV +V G
Sbjct: 41 ELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGM 100
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+L Q + + +P I PKA HL L K + V +
Sbjct: 101 GIKNLKQCLAEAQPDAFIGI------PKA-HLARR----LFGWGKPSVRRLVTV------ 143
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKC------EVEWVDAEDPLFLLYTSGSTGKPKGV 405
G + W + + + +D +L+TSGSTG PKGV
Sbjct: 144 -----------GGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
Query: 406 LHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463
++T G + + + + +P ++ T + +GP L SV+ +
Sbjct: 193 VYTHGMFEAQIEAL---REDYGIEPGEIDLPTFPL-------FALFGPALGMTSVIP-DM 241
Query: 464 APTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV--- 517
PT P D + + +++Y VT + +P L+ E + RY + L S+
Sbjct: 242 DPTRPATVDPAKLFAAIERYGVTNLFGSPALL--------ERLGRYGEANGIKLPSLRRV 293
Query: 518 ---GEPINPSAWRWF----------FNVVGDSRC-PIS---------DTWWQTETGG 551
G P+ + F G + PIS T T+ G
Sbjct: 294 ISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGA 350
|
Length = 552 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
S G I + EVE+ L +P+ E AVV + H G+ AFV L +G E+ LV
Sbjct: 448 SGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVT 507
Query: 694 A-------VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731
R+ + F P K+ + LPK +GKI++ LR IA
Sbjct: 508 RERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIA 552
|
Length = 579 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
LTY +L +LA L ++GV+ GD V LP E + LACARIGAV
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAV 52
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
G +I A++E+ L+SHP+ +AAV V + G+ AFV +G S+E +++ V
Sbjct: 460 GFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQE---AVINYV 516
Query: 696 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730
KQ+ + K+ + +PK+ +GKI+RR L++
Sbjct: 517 AKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRS 551
|
Length = 560 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
+LT+ +L ++ ++A L+ G++KGD V++ +P +L A ++GAV ++ G
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 291 FSSDSLAQRIMDCKPKVVI 309
L + + + +P I
Sbjct: 61 MGRKHLGRCLEEAEPDAFI 79
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 93/412 (22%), Positives = 144/412 (34%), Gaps = 95/412 (23%)
Query: 376 PTKCEVEWVDAED-----PLF-------LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKY 422
P C V A+D P F L YTSG+TG PKG L++ ++H
Sbjct: 153 PLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPD 212
Query: 423 AFDYKPSDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 471
A D W +TG V GP L+G S+
Sbjct: 213 AMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSL------------- 259
Query: 472 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531
+++++ +VT PT+ L+ E R+S V+G G P+ R F +
Sbjct: 260 --YELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIG--GSACPPAMIRTFED 315
Query: 532 VVGDSRCPISDTWWQTETGGF-MITPLPGAWPQKPGSATF--------PFFGVQPVIVDE 582
G + W TE + L Q P +GV IV +
Sbjct: 316 EYG---VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD 372
Query: 583 KGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PF-PGYYFTGDGC-- 633
G E+ +G+ G L ++ W YF+ P G++ TGD
Sbjct: 373 DGRELPWDGKAFGDLQVRGPW-------------VIDRYFRGDASPLVDGWFPTGDVATI 419
Query: 634 -----------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVT 676
S G I + ++E+ V+HP AEAA + H + V
Sbjct: 420 DADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVV 479
Query: 677 LVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
G E R+ L+ ++ + PD + + +P T +GK+ + LR
Sbjct: 480 KRPGA---EVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLR 528
|
Length = 539 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y+QL ++ ++AN+L+ GV++GD V++ LP + EL AMLA ++GAV +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 293 SDSLAQRIMDCKPKVVITSN 312
L R KPK ++
Sbjct: 61 PADLRDRFSRGKPKAIVADE 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 644 VESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA 703
VE+AL +HP A+ AV G+ + GQ + V V G ++L V + + A
Sbjct: 271 VEAALATHPAVADCAVFGLPDDRLGQRV---VAAVVGDGGPAPTLEALRAHVARTLDRTA 327
Query: 704 APDKIHWAPGLPKTRSGKIMRRILRK 729
AP ++H LP+ GK+ RR L +
Sbjct: 328 APRELHVVDELPRRGIGKVDRRALVR 353
|
Length = 358 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-08
Identities = 50/184 (27%), Positives = 71/184 (38%), Gaps = 37/184 (20%)
Query: 226 DP-GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA--CA-RIG 281
DP GV TLT+SQL ++ +A L+ G GD +I P +E +A L A I
Sbjct: 28 DPAGVAETLTWSQLYRRTLNVAEELRRHGS-TGDRAVILAPQGLEYIVAFLGALQAGLIA 86
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
SV G + ++ + D P VV+T++AV + + V + A I V
Sbjct: 87 VPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAV-----VDDVTEYVAPQPGQSAPPVIEV 141
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
D + S P + D +L YTSGST
Sbjct: 142 D---LLDLDS------------------------PRGSDARPRDLPSTAYLQYTSGSTRT 174
Query: 402 PKGV 405
P GV
Sbjct: 175 PAGV 178
|
Length = 578 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 69/278 (24%), Positives = 110/278 (39%), Gaps = 45/278 (16%)
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP-INPSAWRWFFNVVGDSR 537
K++ + TL +LM +S L++ S G + +A RW + G
Sbjct: 305 KWRFSALLGLNTLFVALMDHPGFKDLDFSA--LKLTNSGGTALVKATAERWE-QLTG--- 358
Query: 538 CPISDTWWQTETGGFMITPLPGAWP----QKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593
C I + + TET +P+ P + G+ P G ++D+ G E+ G
Sbjct: 359 CTIVEGYGLTET-----SPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERG 413
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTY-FKPFPGYYFTGDGC------------------- 633
LCIK + + G ++ E T G++ TGD
Sbjct: 414 ELCIKGP-----QVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLII 468
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
SG + E+E +++HP+ A A +GV E G+ + FV + EEL+
Sbjct: 469 VSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAY--- 525
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731
++ + P I LP T GKI+RR LR IA
Sbjct: 526 -CKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562
|
Length = 562 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 50/201 (24%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
++Y ++ ++ + + L+ +G+K GD + I+ E I AC V ++
Sbjct: 6 ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLG 65
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
+++ + + + +V + V ++E
Sbjct: 66 EEAIEYILNETEISIVFCD--------------------------AVKV---YSFEELEE 96
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
+ ++N K ED ++YTSG+TG PKGV+ T G
Sbjct: 97 LGKKN--------------------KVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNI 136
Query: 413 MVHTATTFKYAFDYK-PSDVY 432
+ A K ++ P+DVY
Sbjct: 137 VAGVAGINKIVPEFIGPTDVY 157
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 67/280 (23%), Positives = 106/280 (37%), Gaps = 41/280 (14%)
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538
K+K + F TL +L NE + +L++ S G + + + V G C
Sbjct: 298 KWKFSGFVGLNTLFVALCN--NEAFRKLDFSALKLTLSGGMALQLATAERWKEVTG---C 352
Query: 539 PISDTWWQTETGGFMITPLPGAWPQK---PGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595
I + + TET +P+ P + G+ P ++D+ G E+ G L
Sbjct: 353 AICEGYGMTET-----SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGEL 407
Query: 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC-------------------SSG 636
C+K P + + E T G+ TGD SG
Sbjct: 408 CVKG--PQVMKGYWQRPE--ATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSG 463
Query: 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLA-V 695
+ E+E L + P + A +GV E G+ I FV V E L K V+ +
Sbjct: 464 FNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVV----VKPGETLTKEQVMEHM 519
Query: 696 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735
R + + P + + LP T GKI+RR LR ++
Sbjct: 520 RANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKA 559
|
Length = 562 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 34/202 (16%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
T+ QL V +LA L +GV+ GD V I+ P E + A ARIGA+ + +
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVC-------- 344
+ L + + VI ++A K ++ L A+ C
Sbjct: 106 ASELEYALGQSGVRWVICADAF----KTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 345 ---LTYENQSAMTRENTKWQD----GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSG 397
L W + G + + + + + +D +DP+ + YTSG
Sbjct: 162 VVSLAPAPPPGF----LAWHELQARGETVSREALAERQAS------LDRDDPINIQYTSG 211
Query: 398 STGKPKGVLHT-----TGGYMV 414
+TG PKG + GY V
Sbjct: 212 TTGFPKGATLSHHNILNNGYFV 233
|
Length = 558 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A D TLTY++L ++ +LA L +G + GD V +Y + A+L
Sbjct: 6 DRPA-LVVGGD-----TLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
AC + GA + + ++ +A+ + P ++
Sbjct: 60 ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVA 94
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
G I + ++E+AL+ HP+ EAAVV + H + A V P EEL +
Sbjct: 419 GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEEL---NEHLL 475
Query: 696 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+ + PD +A +P+T +GK ++R LR+
Sbjct: 476 KAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++L +++ L ++G+ KG V IY E ++ V + V+A
Sbjct: 121 YITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANL 180
Query: 292 SSDSL--AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
D+L A R +CK I N K P + L KSG + + Y +
Sbjct: 181 GEDALAYALRETECK---AIVCNG-KNVPNLLRL-----------MKSGGMPNTTIIYLD 225
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV----DAEDPLFLLYTSGSTGKPKGV 405
+ + R + W DVV K + + + +D ++YTSG+TG PKGV
Sbjct: 226 S---LPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGV 282
Query: 406 LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
+HT G + T A + + +D+ + +Y +Y P+
Sbjct: 283 MHTHG-----SLTAGILALEDRLNDLIGPPEE-----DETYCSYLPL 319
|
Length = 700 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY +L V +LA L +G+ GD V++ LP + E I A ++GA+ V A
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAI--PVLA 95
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ G TY +L V ++A L +GV +GD V LP E + L
Sbjct: 39 DKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYL 98
Query: 276 ACARIGAV 283
AC+RIGAV
Sbjct: 99 ACSRIGAV 106
|
Length = 547 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++ + A+ L+ +GVKKGD V + + E +A LA A++GAV +++
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
Query: 290 GFSSDSLAQRIMDCKPKVVITS 311
+ LA I + VI
Sbjct: 61 TQRGEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 92/391 (23%), Positives = 142/391 (36%), Gaps = 90/391 (23%)
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV----YWCTADCGWITGHSY 446
+L+YTSGSTGKPKGV+ + G +H + F + D Y D S
Sbjct: 2337 YLIYTSGSTGKPKGVVVSHGEIAMHCQAVIE-RFGMRADDCELHFYSINFDAA-----SE 2390
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWD------IVDKYKVTIFYTAPTLVRSLMRDGN 500
P+L GA VV+ + W ++ + +V+I P+ L
Sbjct: 2391 RLLVPLLCGARVVL--------RAQGQWGAEEICQLIREQQVSILGFTPSYGSQL---AQ 2439
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWR---------WFFNVVGDSRCPISDTWWQTETGG 551
+ + +R+ + GE + + FFN G TET
Sbjct: 2440 WLAGQGEQLPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYG-----------PTET-- 2486
Query: 552 FMITPLPGAWPQ--KPGSATFPFFGV----QPVIVDEKGVEIEGECSGYLCIKSSWPGAF 605
++ PL P+ + G+A+ P V I+D + +G L + G
Sbjct: 2487 -VVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGATGELYV-----GGA 2540
Query: 606 RTLYGDHERYETT--YFKPFP------GYYFTGDGCS-------------------SGHR 638
G H+R T F P Y TGD G R
Sbjct: 2541 GLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFR 2600
Query: 639 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE--ELRKSLVLAVR 696
I E+ES L+ HP EA V+ ++ Q V+ V G LR++L ++
Sbjct: 2601 IELGEIESRLLEHPAVREAVVLALDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLK 2660
Query: 697 KQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
+Q+ + P + LP T +GK+ RR L
Sbjct: 2661 QQLPDYMVPAHLILLDSLPLTANGKLDRRAL 2691
|
Length = 4334 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
G +I E+E+ L+ HP AA+V +E E+ G+ AF+ + E + + +LR+ L
Sbjct: 439 GEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLK-AVQLRRFL---- 493
Query: 696 RKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735
R+Q I F PD++ LP T GK+ ++ LR+ + +
Sbjct: 494 REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534
|
Length = 536 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 547 TETGGFMIT--PLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPG 603
TET M T P G ++ G+ FP GV + D E G E+ G + +K P
Sbjct: 304 TETN--MNTSNPYDGE--RRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG--PN 357
Query: 604 AFRTLYGDHERYETTY--FKPFPGYYFTGD-GC------------------SSGHRIGTA 642
F+ G E T F+ G++ TGD G S G+ +
Sbjct: 358 VFK---GYWRMPEKTAEEFRA-DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPK 413
Query: 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF 702
EVE + P E+AV+GV H G+G+ A V G E +++ A++ ++ F
Sbjct: 414 EVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEA---AILAALKGRLARF 470
Query: 703 AAPDKIHWAPGLPKTRSGKIMRRILR 728
P ++ + LP+ GK+ + +LR
Sbjct: 471 KQPKRVFFVDELPRNTMGKVQKNLLR 496
|
Length = 504 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D++A+ D G +LTY +L + +LA L +G+ GD V + P E + L
Sbjct: 1 DRIALV----DGGR--SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYL 54
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A R G V + + + LA + D +P +++
Sbjct: 55 AIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLVD 89
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 39/176 (22%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY QL + LA ++ + + +I++ M E+ L + G H+ +
Sbjct: 25 GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG--HAYIPV 82
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
SS A+RI + I ++ +L ++ L
Sbjct: 83 DVSSP--AERI------------------EMI--IEVAKPSLIIAT-----EELPLEILG 115
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
+T + K DI+ V +D ++++TSG+TGKPKGV
Sbjct: 116 IPVITLDELK-----DIFATGNPYD-----FDHAVKGDDNYYIIFTSGTTGKPKGV 161
|
Length = 503 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D +LTY++L ++ +LA L+ GV V + L +L +A+LA + GA + +
Sbjct: 22 DESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDP 81
Query: 290 GFSSDSLAQRIMDCKPKVVIT 310
+ + LA + D ++V+T
Sbjct: 82 AYPPERLAYILEDAGARLVLT 102
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
G+ T+T+++L ++V +LA L +GVK GD V I E IA LA GAV +
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSN 312
+ S + +A + D +VV +
Sbjct: 61 YPTSSPEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLA 694
G I E+E L +HP A+ V GV E G+ I A+V L G S EELR+
Sbjct: 458 GENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELRE----F 513
Query: 695 VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735
+ +I F P + P T +GK+ + +R+I+ +L
Sbjct: 514 CKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEEL 554
|
Length = 558 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 53/233 (22%)
Query: 210 IEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD----------- 258
+ A D+ A + E D TY L +LAN L +GVK GD
Sbjct: 9 LRAAFADRDAPFIETPDG---LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPE 65
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
A+ +Y LA R GAV + ++ L I D +P +V+ A
Sbjct: 66 ALALY-----------LATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWL 114
Query: 319 KAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK 378
I A +G L + ++ D + VP+
Sbjct: 115 SKI------------AAAAGAPHVETLDADGTGSLLEAAAAAPDDF-----ETVPR---- 153
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
A+D +LYTSG+TG+ KG + + G ++ A T + + P DV
Sbjct: 154 ------GADDLAAILYTSGTTGRSKGAMLSHGN-LLSNALTLVDYWRFTPDDV 199
|
Length = 504 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 50/206 (24%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG----------- 281
LTY ++ ++ + ++ GV GD IY E IAM AC G
Sbjct: 78 LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137
Query: 282 --AV-----HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDE 333
AV H+ V F +S I+ C PK +SN K I D+ +E
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSILSCLPKC--SSNL-----KTIVSFGDVSSEQKEE 190
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
+ G+S C ++E S M + + P K + D ++
Sbjct: 191 AEELGVS---CFSWEEFSLMGSLDCE---------------LPPKQK------TDICTIM 226
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTATT 419
YTSG+TG+PKGV+ T + +T
Sbjct: 227 YTSGTTGEPKGVILTNRAIIAEVLST 252
|
Length = 660 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++LL+ V +LA L++ GV+KGD V +Y+ + IA A R GAV V
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 292 SSDSLAQRIMDCKPKVVIT 310
L + D +V+I
Sbjct: 61 REAELEHILNDSGARVLIV 79
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 41/216 (18%)
Query: 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598
++ T+ TET + T P + S+ Q + I +G + I+
Sbjct: 256 RLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQ--------ITIPANQTGNITIQ 307
Query: 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD-------------GCSS------GHRI 639
+ Y G + T D G +S G +
Sbjct: 308 A--QSLALGYYPQILDS--------QGIFETDDLGYLDAQGYLHILGRNSQKIITGGENV 357
Query: 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 699
AEVE+A+++ + V+G+ G+ + A + EEL+ A++ Q+
Sbjct: 358 YPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKT----AIKDQL 413
Query: 700 GAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735
F P P LP+ GKI R+ L++IA ++L
Sbjct: 414 SPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL 449
|
Length = 452 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 75/276 (27%), Positives = 115/276 (41%), Gaps = 47/276 (17%)
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV-LG---SVGEPINPSAWRWFFNVVG 534
KY+V IF TL +L+ N + L V G +V P+ A RW + G
Sbjct: 299 KYQVHIFPAVNTLYNALLN--NPDFDKLDFSKLIVANGGGMAVQRPV---AERWL-EMTG 352
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSG 593
CPI++ + +ET + T P + G+ P + I D+ G ++ GE G
Sbjct: 353 ---CPITEGYGLSETSP-VATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGE-PG 407
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFP-GYYFTGD-------GCS----------- 634
+CI+ + + G R + T G++ TGD G +
Sbjct: 408 EICIRGP-----QVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMIL 462
Query: 635 -SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
SG + E+E + SHP E A VGV E G+ + FV V L + V
Sbjct: 463 VSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFV-----VKKDPALTEEDVK 517
Query: 694 A-VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
A ++++ + P + + LPKT GKI+RR LR
Sbjct: 518 AFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELR 553
|
Length = 557 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+TY Q+ ++VC A+ L +G K + V I+ E IA+ C R ++A
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166
Query: 293 SDSLAQR---------IMDCK--PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
++L I D K K++ S+ ++ + I++ D + + + SG S
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDS--DSSLSGSSN 224
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
++ + +EN V P P+ D ++YTSGSTG
Sbjct: 225 WTVSSFSEVEKLGKENP------------VDPDLPSP--------NDIAVIMYTSGSTGL 264
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432
PKGV+ T G + A +DVY
Sbjct: 265 PKGVMMTHGNIVATVAGVMTVVPKLGKNDVY 295
|
Length = 696 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 642 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA 701
+EVE+ L HP +AVVG KGQ AFV L G + +L R+ +
Sbjct: 478 SEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAA---ALQAWCRENMAV 534
Query: 702 FAAPDKIHWAPGLPKTRSGKI 722
+ P+ I LP T +GK+
Sbjct: 535 YKVPE-IRIVDALPMTATGKV 554
|
Length = 567 |
| >gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 647 ALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD 706
AL S P ++ A+ KG G+YAFV + LR L P+
Sbjct: 248 ALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELPA-DEKSLRARL-----AGAKPPKPPE 301
Query: 707 KIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 758
I LP+ G + ILR IA Q+DEL D L +P + + A+A
Sbjct: 302 HIQPVAALPRDADGTVRDDILRLIAMNQIDELDD--LLREPEIRGLVEAIAA 351
|
Length = 365 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 37/191 (19%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+++ + +LA+ L G+ +GD V + LP + + A GAV + + +
Sbjct: 45 TWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDA 104
Query: 294 DSLAQRIMDCKPKVVIT----SNAVKR------GPKAIHLKDIVDAALDECAKSGISVDV 343
S+A + + KV+I + + GPK + + D+ D G ++D
Sbjct: 105 ASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPL-VIDVDDPEYPGGRFIG-ALD- 161
Query: 344 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 403
YE A + W D EW D + L YTSG+TG PK
Sbjct: 162 ---YEAFLASGDPDFAWT-----LPAD-----------EW----DAIALNYTSGTTGNPK 198
Query: 404 GVL-HTTGGYM 413
GV+ H G Y+
Sbjct: 199 GVVYHHRGAYL 209
|
Length = 545 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 30/184 (16%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++ L+QV +A L D+G+ ++I +E + LA G + V +
Sbjct: 25 RVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAY 84
Query: 292 S--SDSLA--QRIMD-CKPKVVITSNAVK--RGPKAIHLKDIVDAALDECAKSGISVDVC 344
S S A + I D P V + R A+ L + A+ G
Sbjct: 85 SLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVR-----GAPGGPA 139
Query: 345 LTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 404
+ + T D V KY L+TSGSTG PK
Sbjct: 140 IAFA-ALLATPPTAAVDAAFAAVGPDTVAKY-----------------LFTSGSTGLPKA 181
Query: 405 VLHT 408
V++T
Sbjct: 182 VINT 185
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
TY + ++V LA L +G++KGD V I+ P + E + A A+IGA+
Sbjct: 44 WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAI 94
|
Length = 559 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A+DP +L+TSGSTG PKGV++T + + + + + D
Sbjct: 84 ADDPAAILFTSGSTGPPKGVVYTHRTFAAQID---ALRSLYGIREGDRDLAAFP------ 134
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+ +GP L G + V+ PT P D + + + + + +P L++++ R
Sbjct: 135 -PFALFGPAL-GVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVAR--- 189
Query: 501 EYVTRYSRK--SLRVLGSVGEPINPSAWRWFFNVVGD 535
Y + SLR + S G P+ P R F +
Sbjct: 190 -YCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMP 225
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 73/331 (22%), Positives = 122/331 (36%), Gaps = 52/331 (15%)
Query: 230 DATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288
T+TY+++ ++ Q+A L G+K GD V + L L A++G + +
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60
Query: 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
S SL C +V++ P+ L + V+ L G+ V Y
Sbjct: 61 TNIRSGSLLHCFRCCGARVLVAD------PE---LLEAVEEILPALRAMGVRV----FYL 107
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG---- 404
+ ++ D + VP + V +YTSG+TG PK
Sbjct: 108 SHTSPPEGVISLLAKVDAASDEPVPASL-RSGVSI---RSTALYIYTSGTTGLPKAARIS 163
Query: 405 ---VLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
VL +G + T DV + T +G G + GA++V+
Sbjct: 164 HLRVLQCSGMLSLCGVTA---------DDVVYTTLPLYHSSGALLGIVGCIGLGATLVL- 213
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM----RDGNEYVTRYSRKSLRVLGSV 517
P + + + WD KY VT+F L+R L D + + +V ++
Sbjct: 214 --KPKF-SASQFWDDCRKYNVTVFQYIGELLRYLCNQPQSDND--------RDHKVRLAI 262
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
G + P WR F G + +T+ TE
Sbjct: 263 GNGLRPDVWREFLRRFGPIH--VWETYASTE 291
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 4e-05
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK----Q 698
E+E L +HP+ + VVGV E G+ + A++ L G +EE VR +
Sbjct: 464 EIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEE-------DVRDFCRGK 516
Query: 699 IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDE 737
I + P I + P T +GKI + +R++ +L
Sbjct: 517 IAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGL 555
|
Length = 559 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
+LT+ +L Q+V QLA L +GV++GD V + +E + LA R+GAV
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAV 52
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 120/550 (21%), Positives = 198/550 (36%), Gaps = 117/550 (21%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
+ L Y +L+ +V LA L+ V +G V++ E +++LACA++GA+ +
Sbjct: 40 SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGN 99
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
++ + P + + K +A+ E S + V + +
Sbjct: 100 LPIAAIERFCQITDPAAALVAPGSKMA----------SSAVPEALHSIPVIAVDIAAVTR 149
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
+ + G +EDPL +++TSG+TG+PK VL
Sbjct: 150 ESEHSLDAASLAGN--------ADQ---------GSEDPLAMIFTSGTTGEPKAVL---- 188
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP---------------MLNG 455
+ T F + + W T W+ G + TY P +++G
Sbjct: 189 ---LANRTFFAVPDILQKEGLNWVT----WVVGET--TYSPLPATHIGGLWWILTCLMHG 239
Query: 456 ASVVVFEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
V T ++ S +I+ V PTL+ L+ + + SLR++
Sbjct: 240 GLCV------TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELK--SANATVPSLRLV 291
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP---GAWPQ-KPGSATF 570
G G + R F G + + +ETG + LP G+ + + G+
Sbjct: 292 GYGGSRAIAADVR-FIEATG---VRTAQVYGLSETGCTALC-LPTDDGSIVKIEAGAVGR 346
Query: 571 PFFGVQPVIVDEKG----VEIEGECSGY--LCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
P+ GV + G G + + L IKS P + + ER
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKS--PANMLGYWNNPERTAEVLID--- 401
Query: 625 GYYFTGD-------------GCSS------GHRIGTAEVESALVSHPQCAEAAVVGVEHE 665
G+ TGD G SS G I EV+ EAA +E
Sbjct: 402 GWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAAC----YE 457
Query: 666 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA--------FAAPDKIHWAPGLPKT 717
+ + A V L V S EL +S A++ I A A P I +P+T
Sbjct: 458 IPDEEFGALVGL--AVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRT 515
Query: 718 RSGKIMRRIL 727
+SGK+MR L
Sbjct: 516 QSGKVMRASL 525
|
Length = 540 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 114/588 (19%), Positives = 197/588 (33%), Gaps = 131/588 (22%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIA 273
GD W + T++ + + LA+ L D +G+ V + E
Sbjct: 24 GDTTVTTWGGAEQ---EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEV 80
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA--------VKRGPKAIHLKD 325
+ A A +GAV + + +D + I + +V++ +K P +
Sbjct: 81 LFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVF 140
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW-- 383
I + D A +YE DGR +W
Sbjct: 141 IGPSDADSAAAHMPEGIKVYSYE----------ALLDGR-------------STVYDWPE 177
Query: 384 VDAEDPLFLLYTSGSTGKPKGV-------------LHTTGGYMVHTATTFKYAFDYKPSD 430
+D + Y++G+TG PKGV L TT V +F
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVP----- 232
Query: 431 VY----WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
+Y W +++G V GP L+ ++ I+ + +
Sbjct: 233 IYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLA---------------KIIATAMPRVAH 277
Query: 487 TAPTLVRSLMRDGNEYVTRYS--RKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPIS 541
PTL LM + + R SL+ + G + P AW + V +
Sbjct: 278 GVPTLWIQLM----VHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGV------DVV 327
Query: 542 DTWWQTETG--GFMITPLPGA-----WPQKPGSATFPFFGVQPVIVDEKGV-EIEGECSG 593
W TET G + P G W + FP ++ IV++ V E G
Sbjct: 328 HVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA-SLEYRIVNDGQVMESTDRNEG 386
Query: 594 YLCIKSSW-------------PGAFRTLYGDHERYETTYFKPFPGYYFTGDGC------- 633
+ ++ +W GA T G+ F G+ TGD
Sbjct: 387 EIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTA-DGWLRTGDVGSVTRDGF 445
Query: 634 ------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 681
S G I +A++E+ +++ P+ E AV+G + G+ A L G+
Sbjct: 446 LTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGI 505
Query: 682 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
+ E + L +R ++ + P+ + + KT GK ++ LR+
Sbjct: 506 EPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553
|
Length = 576 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 39/173 (22%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTY QL +Q +LA +++ + K +I+Y M + +A L + G + V
Sbjct: 26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
S+ + I P++VI + + A+ + I +AL++ SG V
Sbjct: 86 SERIEMIIEAAGPELVI--HTAELSIDAVGTQIITLSALEQAETSGGPVSF--------- 134
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
V +D +++YTSGSTG PKGV
Sbjct: 135 ----------------------------DHAVKGDDNYYIIYTSGSTGNPKGV 159
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 197 GITNICYNCLDRNIEAGLGDKVA---IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIG 253
G T I ++RNI A +GD VA + + G LT++QL ++ + L+ +
Sbjct: 33 GTTLISL--IERNI-ANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV- 88
Query: 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA----GFSSDSLAQRIMDCKPKVVI 309
GD V I P ++ A + G + +FA G ++ L + D +P VV+
Sbjct: 89 AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPG-HAERLDTALRDAEPTVVL 147
Query: 310 TSNAVK-------------RGPKAIHLKDIVDAALDECAKSGISVD 342
T+ A R P+ I + I D+A + + D
Sbjct: 148 TTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELDTD 193
|
Length = 612 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+Y +L Q LA L+ G+K GD ++ L + E I A ++G V A F
Sbjct: 48 QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA--PVNALF 105
Query: 292 SSDSL-----AQRIMDCKPKVVITSN 312
S A +I +P ++I
Sbjct: 106 SHQRSELNAYASQI---EPALLIADR 128
|
Length = 536 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 367 WWQDVVPKYPTKCEVEWV---------DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+W+ EW+ D ED +L+TSG+ PKGV T + +
Sbjct: 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQR 213
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
K+ F K DV G + T P+L+G VVF P YP + +++
Sbjct: 214 ACLKF-FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVP-VVFAYNPLYPK--KIVEMI 269
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
D+ KVT + P +++ + + V+G
Sbjct: 270 DEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIG 307
|
Length = 539 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 129/570 (22%), Positives = 200/570 (35%), Gaps = 139/570 (24%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
L+Y + L LA LK +K + V I LP + +A LA G V V +
Sbjct: 641 ELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGKV--PVNLNY 697
Query: 292 --SSDSLAQRIMDCKPKVVITSNA-------------VKRGPKAIHLKDIVDAALDECAK 336
S +L I + K VITS + K I+L+D+ K
Sbjct: 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDL---------K 748
Query: 337 SGIS-VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ IS VD + + Y +D ++++
Sbjct: 749 AKISKVDKLTALLAARLLP-----------ARL--LKRLYGPT-----FKPDDTATIIFS 790
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPSDVYWCTADCGWITG-----HSY- 446
SGS G+PKGV+ + + + + F+ + DV I HS+
Sbjct: 791 SGSEGEPKGVMLSHHNIL----SNIEQISDVFNLRNDDV---------ILSSLPFFHSFG 837
Query: 447 ---VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ P+L G VV+ PT D+ +V K++ TI PT +R +R N+ +
Sbjct: 838 LTVTLWLPLLEGIK-VVYHPDPT--DALGIAKLVAKHRATILLGTPTFLRLYLR--NKKL 892
Query: 504 TRYSRKSLRVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--- 557
SLR++ + E + P A+ F + I + + TET +P+
Sbjct: 893 HPLMFASLRLVVAGAEKLKPEVADAFEEKFGI------RILEGYGATET-----SPVASV 941
Query: 558 -------PGAWPQ---KPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFR 606
Q K GS P GV IVD E E+ G + I P +
Sbjct: 942 NLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGG--PQVMK 999
Query: 607 TLYGDHERY-ETTYFKPFPGYYFTGDGCSSGH-----------------RIG-----TAE 643
GD E+ E G+Y TGD GH +IG
Sbjct: 1000 GYLGDPEKTAEVIKDIDGIGWYVTGD---KGHLDEDGFLTITDRYSRFAKIGGEMVPLGA 1056
Query: 644 VESAL--VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA 701
VE L + AV V E KG+ + T EEL++++ +
Sbjct: 1057 VEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDV--EELKRAI---KESGLPN 1111
Query: 702 FAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731
P + LP SGK+ + L+++A
Sbjct: 1112 LWKPSRYFKVEALPLLGSGKLDLKGLKELA 1141
|
Length = 1146 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 55/207 (26%), Positives = 77/207 (37%), Gaps = 34/207 (16%)
Query: 547 TETG-GFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGA 604
TET I PL + GS P I D+ G + GE G LCIK
Sbjct: 364 TETSPAACINPL--TLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI-GELCIKGP---- 416
Query: 605 FRTLYGDHER-YETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEV 644
+ + G +R ET G+ TGD SG + E+
Sbjct: 417 -QVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEI 475
Query: 645 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA 704
E + P E A VGV E G+ + + + +E+++ R + +
Sbjct: 476 EDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAH----ARANLTGYKQ 531
Query: 705 PDKIHWAPGLPKTRSGKIMRRILRKIA 731
P I + LPKT GKI+RR LR A
Sbjct: 532 PRIIEFRKELPKTNVGKILRRELRDAA 558
|
Length = 560 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 31/188 (16%)
Query: 224 ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
DP V+ LTY +LL L LK G+ V + LP + A G V
Sbjct: 651 VEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708
Query: 284 HSVVFAGFSSDSLAQRIMDCKP---KVVITSNA-VKRGPKAIHLKDIVDAALDECAKSGI 339
+++ FS+ +A + CK K V+TS A +++ L +++A +
Sbjct: 709 PAMI--NFSA-GIANILSACKAAQVKTVLTSRAFIEKA----RLGPLIEA---------L 752
Query: 340 SVDVCLTY-ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGS 398
+ + Y E+ R D P D +DP +L+TSGS
Sbjct: 753 EFGIRIIYLED----VRAQIGLADKIKGLLAGRFPLVYFC----NRDPDDPAVILFTSGS 804
Query: 399 TGKPKGVL 406
G PKGV+
Sbjct: 805 EGTPKGVV 812
|
Length = 1140 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 35/187 (18%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA----MLACARIGAVHSVV 287
LTY++ L++V +A L D G+ ++I L I LA G ++ V
Sbjct: 69 RLTYAEALERVRAIAQALLDRGLSAERPLMI----LSGNSIEHALLALAAMYAGVPYAPV 124
Query: 288 FAGFS--SDSLAQ--RIMD-CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVD 342
+S S + +++ P +V + AL + + V
Sbjct: 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA-----------FARALAAVVPADVEV- 172
Query: 343 VCLTYENQSAMTRENTKWQD-GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
+ R T + V + V + L+TSGSTG
Sbjct: 173 --VAVRGAVPG-RAATPFAALLATPPTAAVDAAHAA------VGPDTIAKFLFTSGSTGL 223
Query: 402 PKGVLHT 408
PK V++T
Sbjct: 224 PKAVINT 230
|
Length = 614 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 42/223 (18%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D++A+ + A+DPG L+Y L + +A L+ GD ++ P + A
Sbjct: 24 DRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASF-GDRAVLLFPSGPDYVAAFF 82
Query: 276 ACARIGAVHSVVFAGFSS-----DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAA 330
C G + + S+ + L I D +P++++T ++ + +
Sbjct: 83 GCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQM------EEL 136
Query: 331 LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390
A + VD A+ WQ+ P + +D
Sbjct: 137 AAANAPELLCVDTL-----DPALAEA-----------WQE-----PA------LQPDDIA 169
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF--DYKPSDV 431
FL YTSGST PKGV + G +V ++ F D P DV
Sbjct: 170 FLQYTSGSTALPKGV-QVSHGNLVANEQLIRHGFGIDLNPDDV 211
|
Length = 4334 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 57/180 (31%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+L+Y QL Q+V LA L+ +GVK + + L ++ IA LAC + G V + F
Sbjct: 2 SLSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFF 58
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT-YENQ 350
S+ HL L++ D+ ++ +
Sbjct: 59 SAQQTQ------------------------HL-------LNDAG-----ADLLISDDPDA 82
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF-----LLYTSGSTGKPKGV 405
++ L + YTSGSTG+PKGV
Sbjct: 83 ASALHTPFATLGEDLYIALRPSA------------NPVELPAGTAKITYTSGSTGQPKGV 130
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 204 NC----LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYL-KDIGVKKGD 258
NC LDR++ G G++ + T TY LL + ++A+ L +D+GV G+
Sbjct: 34 NCAAELLDRHVHNGRGNRPCFR------TFEETWTYQDLLDRANRIAHVLVEDLGVVPGN 87
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC 303
V++ L LA + GA+ + L I+D
Sbjct: 88 RVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAKELTT-IVDK 131
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
GD+ + + G TY+ ++V +LAN L+ +GVK GD V
Sbjct: 10 GDREIVSRTPD--GSIHRYTYADFYRRVRRLANALESLGVKPGDRV 53
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
+ TY Q+ + LA+YL G+K+GD V+IY ++L +A++ + GA SV+
Sbjct: 270 SFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVI 325
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
G+RI E+E+ L + EAAV V+ V G+ + ++ + V L + + +
Sbjct: 4132 GYRIELGEIEARLHEQAEVREAAV-AVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQRL 4190
Query: 696 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
R ++ + P W LP +GK+ R+ L
Sbjct: 4191 RAELPDYMVPLHWLWLDRLPLNANGKLDRKAL 4222
|
Length = 4334 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
+TY +L + LA +L+ G+ KG V I +P +++ P+A+ A R G V
Sbjct: 46 GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV 99
|
Length = 557 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 51/204 (25%)
Query: 232 TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV------- 283
T+TY + Q V Q A YL ++ +KKGD V + +P ++ PIA R G
Sbjct: 50 TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPL 109
Query: 284 -------HSVVFAGFSS--------DSLAQRIMDCKPKVVITSNA--VKRGPKAIHLKDI 326
H ++ +G S ++ Q I D K VIT+ + PKA +
Sbjct: 110 YTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKA----AL 165
Query: 327 VDAALDECAK--SGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
V+ + K ++ + + A+ R+++ +P +
Sbjct: 166 VNFVVKYVKKLVPEYRINGAIRFREALALGRKHS-------------MPTLQ-------I 205
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHT 408
+ +D FL YT G+TG KG + T
Sbjct: 206 EPDDIAFLQYTGGTTGVAKGAMLT 229
|
Length = 560 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434
VD +DP L+YTSG+TG PKG + +V + P Y C
Sbjct: 84 VDPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTC 134
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 759 | |||
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.94 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.88 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.79 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.65 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.52 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.46 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.26 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.47 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 97.42 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 95.88 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 95.4 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 94.83 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 94.76 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 92.47 |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-95 Score=861.24 Aligned_cols=636 Identities=90% Similarity=1.512 Sum_probs=544.9
Q ss_pred CcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhccccccccccc-ccccccccccCCCcccccCCCccccHH
Q 004348 124 NDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQ-RVCSENLDVRKGNVKIEWFKGGITNIC 202 (759)
Q Consensus 124 ~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wf~~~~~n~~ 202 (759)
....++++.|+..++.+++.+|+++++++++||+.||.++++++.|..+|+. .++..+.+++.++..++||+++++|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~ 90 (666)
T PLN02654 11 NDLVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNIC 90 (666)
T ss_pred CcccCCCHHHHhhccCCCHHHHHHHHHHHhcCHHHHHHHHHHhCCeecCCCcceEeccCCCcccCCccccccCCCEeeHH
Confidence 3456888999998998888999999999999999999999988899988752 254333444445456799999999999
Q ss_pred HHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCC
Q 004348 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGA 282 (759)
Q Consensus 203 ~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGa 282 (759)
+++|++++++.+|+++|+++..++.+..+.+||+||.++++++|+.|+++|+++||+|+|+++|++|+++++|||+++|+
T Consensus 91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 99999988624899999998654434568999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCC
Q 004348 283 VHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362 (759)
Q Consensus 283 v~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 362 (759)
+++|+++.++.+++.++|++++|++||+++...++.+.+.++..++.++.........+..++.+............+..
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 99999999999999999999999999999988888888888888877665431111122333433321100000112223
Q ss_pred CCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhc
Q 004348 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442 (759)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~ 442 (759)
.++.+|++.+...+...+.....++|++||+|||||||+||||+++|++++..........++++++|++++.+|++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 330 (666)
T PLN02654 251 GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWIT 330 (666)
T ss_pred CCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhh
Confidence 34556766654433333344567899999999999999999999999997766666677778999999999999999999
Q ss_pred hhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCC
Q 004348 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522 (759)
Q Consensus 443 g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~ 522 (759)
++.+.++++|+.|++++++++.+.++++..+|++|++++||+++++|++++.|++...+.....++++||.++++||+++
T Consensus 331 g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~ 410 (666)
T PLN02654 331 GHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPIN 410 (666)
T ss_pred hhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCC
Confidence 98888999999999999999877778999999999999999999999999999987644345567899999999999999
Q ss_pred HHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCC
Q 004348 523 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602 (759)
Q Consensus 523 ~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~ 602 (759)
+++++++.+.+|..++++.+.||+||+++..+...+...+.+++++|+|++|++++|+|++|++++.|+.|||+|++|||
T Consensus 411 ~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p 490 (666)
T PLN02654 411 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWP 490 (666)
T ss_pred HHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCc
Confidence 99999999999865688999999999988766544433356788999999999999999999999999999999999999
Q ss_pred cccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEe
Q 004348 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663 (759)
Q Consensus 603 ~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 663 (759)
++++|||++++++...|+...+|||+|||+|+ +|+||+|.|||++|.+||+|.||+|++++
T Consensus 491 ~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~ 570 (666)
T PLN02654 491 GAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIE 570 (666)
T ss_pred hhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 99999999999999999887789999999998 89999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCC
Q 004348 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTST 743 (759)
Q Consensus 664 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~ 743 (759)
++..++.+++||+++++...++++.++|+++++++|+.|++|+.|+++++||+|+||||+|+.|++++.+...++++.++
T Consensus 571 d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~~~~~~~~~~ 650 (666)
T PLN02654 571 HEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTST 650 (666)
T ss_pred cCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCCCCCCCCccc
Confidence 99889999999999988766677788999999999999999999999999999999999999999999876546789999
Q ss_pred CCChhhHHHHHhhhcC
Q 004348 744 LADPGVVDQLIALADC 759 (759)
Q Consensus 744 ~~~p~~~~~~~~~~~~ 759 (759)
++||+++++|+++++.
T Consensus 651 ~~~~~~~~~~~~~~~~ 666 (666)
T PLN02654 651 LADPGVVDQLIALADS 666 (666)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9999999999998863
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-91 Score=776.21 Aligned_cols=502 Identities=46% Similarity=0.750 Sum_probs=463.0
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMEL 270 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~ 270 (759)
+||.++++|..+|+++++.+...+|++|++|.++.++. +.+||+||.++++++|+.|++ .|+ +||||+|+||+.+|+
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~ 78 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEA 78 (528)
T ss_pred CCcCCceeechhhhhhhhhhccCCCceEEEEEcCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHH
Confidence 59999999999999999987456799999999765433 899999999999999999986 678 999999999999999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccC
Q 004348 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350 (759)
Q Consensus 271 iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~ 350 (759)
+++||||+|+||+++|+.+.++++.++++++++++++||+++...++++.+.+++.+++++.. ++++.+.
T Consensus 79 ~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~----------~iv~~r~ 148 (528)
T COG0365 79 VIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS----------VVVVPRL 148 (528)
T ss_pred HHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc----------eEEeccc
Confidence 999999999999999999999999999999999999999999999999999998887765431 4444332
Q ss_pred ccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCc
Q 004348 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430 (759)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d 430 (759)
.++|++.+...+..++....+++|++||+|||||||+||||+|+|++++..........+++.++|
T Consensus 149 --------------~~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~D 214 (528)
T COG0365 149 --------------GLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGD 214 (528)
T ss_pred --------------cccHHHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCC
Confidence 167888887777777777799999999999999999999999999999999888888899999999
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCC
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (759)
+++++++++|++|+.+.+|++|++|+|++++++.+.+ +++++|++|++|+||+++++|+.+++|++.+. ..++++++
T Consensus 215 v~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~~~~dlss 291 (528)
T COG0365 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--GEPYDLSS 291 (528)
T ss_pred EEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--cccccchh
Confidence 9999999999999999999999999999999999888 89999999999999999999999999999976 56789999
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCC
Q 004348 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (759)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g 590 (759)
||.+.+.||||+++.++|+.+.+| ++|.+.||+||++++.+...+ +.++++.|+|+||+++.|+|++|+++++|
T Consensus 292 Lr~~~SaGEPLnpe~~~w~~~~~g---~~i~d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~g~~~~~~ 365 (528)
T COG0365 292 LRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDEGNPVPPG 365 (528)
T ss_pred heeeeccCCCCCHHHHHHHHHHhC---CCEeccccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCCCCcCCCC
Confidence 999999999999999999999998 899999999999966655444 34666669999999999999999999999
Q ss_pred ceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcC
Q 004348 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSH 651 (759)
Q Consensus 591 ~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~ 651 (759)
+ |+|+|+.|||++++|||+|||++.+.|+.. ||+|||.++ .|+||.+.|||++|.+|
T Consensus 366 ~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~---~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~h 441 (528)
T COG0365 366 V-GELVVRLPWPGMALTYWNDPERYKEAYFGR---WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAH 441 (528)
T ss_pred c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc---eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhC
Confidence 9 999999999999999999999999999864 999999877 89999999999999999
Q ss_pred CccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHH
Q 004348 652 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731 (759)
Q Consensus 652 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~ 731 (759)
|.|.||+||+++|+.+|+.++|||+++++...+ ++.++|++++++.+.++++|+.|+++++||||+||||+|+.||+++
T Consensus 442 P~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~ 520 (528)
T COG0365 442 PAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKIL 520 (528)
T ss_pred cceeeeEEEeccCCCCCcEEEEEEEecCCCChH-HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999877 9999999999999888999999999999999999999999999998
Q ss_pred hc
Q 004348 732 SR 733 (759)
Q Consensus 732 ~~ 733 (759)
.+
T Consensus 521 ~~ 522 (528)
T COG0365 521 HK 522 (528)
T ss_pred hh
Confidence 84
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-90 Score=808.85 Aligned_cols=599 Identities=60% Similarity=1.086 Sum_probs=523.5
Q ss_pred hhHHHHHHHHHhhChHHHHHHhhcc-cccccccccccccccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEE
Q 004348 142 PQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (759)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al 220 (759)
+++|+++++++++||+.||.+++++ +.|.++|.+ +++.. .+.+.+||+++++|+++++|+++++ .+||++|+
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~Al 76 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFTK-VLDWS-----FPPFYKWFVGGELNVSYNCVDRHLE-ARPDKVAI 76 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcCceecCCce-eecCC-----CCCCCeeCCCCEEEHHHHHHHHhhc-cCCCCeEE
Confidence 5789999999999999999999877 889999887 65221 1124599999999999999999998 89999999
Q ss_pred EEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHH
Q 004348 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI 300 (759)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il 300 (759)
++.+++.+..+.+||+||.++++++|+.|+++|+++||+|+++++|++|+++++|||+++|++++|++|.++.+++.+++
T Consensus 77 ~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l 156 (625)
T TIGR02188 77 IWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRI 156 (625)
T ss_pred EEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHH
Confidence 98754334467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCC-CccEEEEeccCccccccccccCCCCccchhhhcCCCCCCC
Q 004348 301 MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI-SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379 (759)
Q Consensus 301 ~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (759)
++++++++|+++...++++.+.++..+++++..+ + .++.+++++.... ...+....+.+|++.+.......
T Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 228 (625)
T TIGR02188 157 NDAGAKLVITADEGLRGGKVIPLKAIVDEALEKC----PVSVEHVLVVRRTGN----PVPWVEGRDVWWHDLMAKASAYC 228 (625)
T ss_pred HhcCCCEEEEcCccccCCcccchHHHHHHHHHhC----CCCccEEEEEcCCCC----CcCccccccccHHHHHhhcCCCC
Confidence 9999999999998888888888888887776654 4 4666776654321 11122234556776655443334
Q ss_pred CccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEE
Q 004348 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 380 ~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlv 459 (759)
+.....++++++|+|||||||+||||+++|++++.+........+++.++|++++.++++|..++.+.++.+|++|++++
T Consensus 229 ~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~v 308 (625)
T TIGR02188 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTV 308 (625)
T ss_pred CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEE
Confidence 44556789999999999999999999999999776666666667899999999999999999998888999999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCcc
Q 004348 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (759)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (759)
++++.+..+++..++++|+++++|+++++|++++.|.+.........++++||.+++|||++++++++++.+.++..+++
T Consensus 309 l~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~ 388 (625)
T TIGR02188 309 MFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCP 388 (625)
T ss_pred EECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCc
Confidence 99887777799999999999999999999999999998765444456789999999999999999999999999865689
Q ss_pred EeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccC-CCceEEEEEecCCCcccccccCChhhHHhh
Q 004348 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (759)
Q Consensus 540 l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp-~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~ 618 (759)
+++.||+||+++.++...++..+.+++++|+|++|++++|+|++|++++ .|+.|||+|+||||++++|||++++++.+.
T Consensus 389 i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~ 468 (625)
T TIGR02188 389 IVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDT 468 (625)
T ss_pred eEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHH
Confidence 9999999999987655444333456789999999999999999999999 899999999999999999999999999999
Q ss_pred hcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcC
Q 004348 619 YFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 679 (759)
Q Consensus 619 ~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 679 (759)
|+...+|||+|||+|+ +|+||+|.|||++|.+||.|.||+|++++++..++.++|||++++
T Consensus 469 ~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~ 548 (625)
T TIGR02188 469 YFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKD 548 (625)
T ss_pred HhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCC
Confidence 9877789999999998 899999999999999999999999999999988999999999998
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhHHHHHh
Q 004348 680 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755 (759)
Q Consensus 680 ~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 755 (759)
+...++++.++|+++++++|+++++|+.|+++++||+|+|||++|+.|++++.++.....+.++++||+++++|++
T Consensus 549 ~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 624 (625)
T TIGR02188 549 GYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGEEEILGDTSTLEDPSVVEELIE 624 (625)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHh
Confidence 7766666778999999999999999999999999999999999999999998875433678999999999999975
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-88 Score=796.70 Aligned_cols=608 Identities=60% Similarity=1.065 Sum_probs=521.2
Q ss_pred hhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHHHHHhhccc
Q 004348 132 DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIE 211 (759)
Q Consensus 132 lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~ 211 (759)
-|...+... +++|.+++++++++|+.||.++++++.|.++|++ +++. .+.+.+||+++++|.++++|+++++
T Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~------~~~~~~w~~~~~~n~~~~~l~~~~~ 78 (637)
T PRK00174 7 EFAANALID-MEQYKALYQESVEDPEGFWAEQAKRLDWFKPFDT-VLDW------NAPFIKWFEDGELNVSYNCLDRHLK 78 (637)
T ss_pred HHHhhcCCC-hHHHHHHHHHHhcCHHHHHHHHHHhcCeecCCcc-cccC------CCCCCccCCCCEeEHHHHHHHHhhc
Confidence 344444443 5899999999999999999999877889999988 6532 1224599999999999999999998
Q ss_pred ccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCC
Q 004348 212 AGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291 (759)
Q Consensus 212 ~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~ 291 (759)
.+||++|+++.+.+++..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 79 -~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~ 157 (637)
T PRK00174 79 -TRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGF 157 (637)
T ss_pred -cCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCC
Confidence 8999999998754323467899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhh
Q 004348 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371 (759)
Q Consensus 292 ~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (759)
+.+++.+++++++++++|+++......+.+.+.+.+.+.+..+ +.++.+++++.... ...+....+.+|++.
T Consensus 158 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 229 (637)
T PRK00174 158 SAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANC----PSVEKVIVVRRTGG----DVDWVEGRDLWWHEL 229 (637)
T ss_pred CHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhC----CCccEEEEEcCCCC----CcCcCCCCcccHHHH
Confidence 9999999999999999999988777777777777776666554 45666666554321 111222234556666
Q ss_pred cCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHH
Q 004348 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451 (759)
Q Consensus 372 ~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~ 451 (759)
........+.....+++++||+|||||||+||||+++|++++.+........++++++|++++.++++|+.++.+.++.+
T Consensus 230 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (637)
T PRK00174 230 VAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGP 309 (637)
T ss_pred HhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHH
Confidence 54433333444567899999999999999999999999997666665566678999999999999999999988889999
Q ss_pred hhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHH
Q 004348 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531 (759)
Q Consensus 452 L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 531 (759)
|++|++++++++.+..+++..++++|++++||++.++|++++.|++.........++++||.+++|||++++++++++.+
T Consensus 310 l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~ 389 (637)
T PRK00174 310 LANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYK 389 (637)
T ss_pred HHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHH
Confidence 99999999998766667999999999999999999999999999887543334457899999999999999999999999
Q ss_pred HhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCC
Q 004348 532 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611 (759)
Q Consensus 532 ~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~ 611 (759)
.++..++++++.||+||+++..+...++....+++++|+|++|++++|+|++|+++|.|+.|||+|+||+|++++|||++
T Consensus 390 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~ 469 (637)
T PRK00174 390 VVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGD 469 (637)
T ss_pred HhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCC
Confidence 98855689999999999987665443332234567899999999999999999999999999999999989999999999
Q ss_pred hhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEE
Q 004348 612 HERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIY 672 (759)
Q Consensus 612 ~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lv 672 (759)
++++.+.||...+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++++++..++.++
T Consensus 470 ~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~ 549 (637)
T PRK00174 470 HERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIY 549 (637)
T ss_pred HHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEE
Confidence 99999999877789999999988 89999999999999999999999999999998899999
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhHHH
Q 004348 673 AFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQ 752 (759)
Q Consensus 673 a~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~~~ 752 (759)
|||++.++...++++.++|+++++++|+.|++|..|+++++||+|+|||++|++|++++.++. ...+.++++||+++++
T Consensus 550 a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~-~~~~~~~~~~~~~~~~ 628 (637)
T PRK00174 550 AFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEE-ILGDTSTLADPSVVEK 628 (637)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCC-CCCCcccccCHHHHHH
Confidence 999998876555666789999999999999999999999999999999999999999987653 4678999999999999
Q ss_pred HHhhh
Q 004348 753 LIALA 757 (759)
Q Consensus 753 ~~~~~ 757 (759)
|++..
T Consensus 629 ~~~~~ 633 (637)
T PRK00174 629 LIEAR 633 (637)
T ss_pred HHHHH
Confidence 98864
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-88 Score=749.49 Aligned_cols=595 Identities=56% Similarity=0.928 Sum_probs=539.9
Q ss_pred ChhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEE
Q 004348 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (759)
Q Consensus 141 ~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al 220 (759)
-+++|+.++++++.||+.||+++++++.|...+.. . +....++...++||+++.+|.++++++++.....+|++|+
T Consensus 9 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a~ 84 (626)
T KOG1175|consen 9 SLSSYREFYRFSVEDPERFWGEVAKELHWKFPWPR-C---NKDENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVAI 84 (626)
T ss_pred CHHHHHHHHhhcccCHHHHHHHhhhhhhcccCccc-c---ccccccCCCCccccccchhhhhHhhhhhhhhhcCCCCcEE
Confidence 46899999999999999999999887776665552 1 2222333445699999999999999999877445999999
Q ss_pred EEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHH
Q 004348 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI 300 (759)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il 300 (759)
++....++....+||.||.+++.++|..|.+.|+++||+|+++||+.+|+++++|||.++|++++++...+++..+..+|
T Consensus 85 ~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl 164 (626)
T KOG1175|consen 85 IFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRL 164 (626)
T ss_pred EEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHH
Confidence 99977666666699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCC
Q 004348 301 MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380 (759)
Q Consensus 301 ~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (759)
++++||+|+|.+...+..+.+.++.++.+++..+..........+.+.+.. .+++|++.+.......+
T Consensus 165 ~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~d~~~~~~~~~a~~~~~ 232 (626)
T KOG1175|consen 165 QDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN------------RDLFWSLELKKASPEHP 232 (626)
T ss_pred HhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc------------ccccHHHHhhhcCCCCC
Confidence 999999999999999999999999999888876532222222233333221 37888888787777777
Q ss_pred ccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEE
Q 004348 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (759)
Q Consensus 381 ~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl 460 (759)
+...+.+|+.+|+|||||||.|||+++++.+++...+......++++++|+++++++++|+.++++.++++|++|+++++
T Consensus 233 ~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl 312 (626)
T KOG1175|consen 233 CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVL 312 (626)
T ss_pred ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccE
Q 004348 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (759)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l 540 (759)
+++.+. ++..+|+++++|+||++++.|+.++.|.+........+++++||++.++||++.++.++|+.+.++. .+|
T Consensus 313 ~~g~p~--~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~--~pv 388 (626)
T KOG1175|consen 313 YEGPPF--DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGL--DPI 388 (626)
T ss_pred EcCCCC--ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCc--cch
Confidence 998765 9999999999999999999999999999888776777777889999999999999999999999984 379
Q ss_pred eeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCC-ceEEEEEecCCC-cccccccCChhhHHhh
Q 004348 541 SDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE-CSGYLCIKSSWP-GAFRTLYGDHERYETT 618 (759)
Q Consensus 541 ~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g-~~GEL~I~g~~~-~v~~GY~~~~e~~~~~ 618 (759)
++.||+||+|+.++...++..+.++++++.|++|+.+.|+|++|++++++ +.|+|+++.||| +++++||+|++++...
T Consensus 389 ~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~ 468 (626)
T KOG1175|consen 389 YETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAA 468 (626)
T ss_pred hhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhh
Confidence 99999999999988777665478999999999999999999999999987 899999999998 9999999999999999
Q ss_pred hcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcC
Q 004348 619 YFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 679 (759)
Q Consensus 619 ~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 679 (759)
||.+++|+|+|||.++ +|+||++.|||++|.+||.|.|++||+.+|+.++|.++|||++++
T Consensus 469 yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~ 548 (626)
T KOG1175|consen 469 YFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKS 548 (626)
T ss_pred hcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcC
Confidence 9999999999999998 899999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhHHHHHhhh
Q 004348 680 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALA 757 (759)
Q Consensus 680 ~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 757 (759)
+....+++.++|++++|+.+.+|+.|+.|+++++||+|+||||+|++||++.+++ +++|.+|++||++++.+++..
T Consensus 549 g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~--~~~d~st~~dp~v~~~~~~~~ 624 (626)
T KOG1175|consen 549 GSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK--AVGDTSTLADPSVIDHLRSIL 624 (626)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC--ccccccccCChHHHHHHHHhh
Confidence 9888899999999999999999999999999999999999999999999999998 789999999999999998754
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-87 Score=784.54 Aligned_cols=596 Identities=38% Similarity=0.695 Sum_probs=506.4
Q ss_pred HHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEE
Q 004348 144 KYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWE 223 (759)
Q Consensus 144 ~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~ 223 (759)
+|.++++++++||+.||.++++.+.|.++|++ +++.+ ...+.+||.++.+|.++++|++++. .+|+++|+++.
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~Al~~~ 74 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPPQR-ILDYS-----NPPFARWFAGGRTNLCHNALDRHLD-ERGEQLALVTV 74 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHhCCeecCCcc-cccCC-----CCCcCccCCCCEeeHHHHHHHHHhC-cCCCCeEEEEE
Confidence 48899999999999999999888999999988 65321 1124599999999999999999988 89999999986
Q ss_pred cCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhc
Q 004348 224 ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC 303 (759)
Q Consensus 224 ~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~ 303 (759)
+.+.+..+++||+||+++++++|++|+++|+++||+|+|+++|++|+++++|||+++|++++|+++.++.+++.++++++
T Consensus 75 ~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~ 154 (628)
T TIGR02316 75 SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDA 154 (628)
T ss_pred cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc
Confidence 54334568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCC-CCCCcc
Q 004348 304 KPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVE 382 (759)
Q Consensus 304 ~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 382 (759)
+|++||+++...++++.+.++..+++++.... ....++++++.... ........+.+|.+...... ...+..
T Consensus 155 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (628)
T TIGR02316 155 TPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ---HPPPHVLLVDRGLA----PMRLIPGRDVDYAALRTQHEDAQVPVE 227 (628)
T ss_pred CceEEEECCccccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCC----CcCcccCccccHHHHhhccccCCCCce
Confidence 99999999888778888888888877665431 23456666654211 11112223455666544322 122333
Q ss_pred ccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 383 ~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
...+++++||+|||||||+||||+++|++++.+........++++++|++++.++++|+.++.+.++++|+.|+++++++
T Consensus 228 ~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~ 307 (628)
T TIGR02316 228 WLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYE 307 (628)
T ss_pred ecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeC
Confidence 45789999999999999999999999999766666666777899999999999999999998888999999999999998
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEee
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n 542 (759)
+.+..+++..++++|+++++|+++++|++++.|.+.........++++||.+++|||++++++++++.+.++ .++++
T Consensus 308 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~---~~~~~ 384 (628)
T TIGR02316 308 GLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG---KPVID 384 (628)
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhC---CCEEe
Confidence 876677999999999999999999999999999886543344567899999999999999999999999887 68999
Q ss_pred eeccccccceecccCCCC--CCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCC-CcccccccCChhhHHhh
Q 004348 543 TWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETT 618 (759)
Q Consensus 543 ~YG~TE~~~~~~~~~~~~--~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~-~~v~~GY~~~~e~~~~~ 618 (759)
.||+||++..++....+. ...+.+++|+|++|++++|+|+ +|++++.|+.|||+|+||+ ++++.|||++++++.+.
T Consensus 385 ~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~ 464 (628)
T TIGR02316 385 NYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKT 464 (628)
T ss_pred cccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHh
Confidence 999999986444322211 1345678999999999999998 7999999999999999976 37899999999999998
Q ss_pred hcccC-CcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEc
Q 004348 619 YFKPF-PGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV 678 (759)
Q Consensus 619 ~~~~~-~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~ 678 (759)
|+... ++||+|||+|+ +|+||+|.|||++|.+||+|.||+|++++++..++.+++||+++
T Consensus 465 ~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~ 544 (628)
T TIGR02316 465 YWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILK 544 (628)
T ss_pred hhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEc
Confidence 87543 45999999988 89999999999999999999999999999998899999999988
Q ss_pred CCCCC-----cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhHHHH
Q 004348 679 EGVPY-----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 753 (759)
Q Consensus 679 ~~~~~-----~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~~~~ 753 (759)
++... .+.+.++|+++++++|++|++|+.|+++++||+|+|||++|+.|++++.+. ...+.++++||+++++|
T Consensus 545 ~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~--~~~~~~~~~~~~~~~~~ 622 (628)
T TIGR02316 545 ESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR--DPGDLTTIDDPGALEQV 622 (628)
T ss_pred CCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCC--CCCCcccccCHHHHHHH
Confidence 65432 235678999999999999999999999999999999999999999998765 46789999999999999
Q ss_pred Hhhhc
Q 004348 754 IALAD 758 (759)
Q Consensus 754 ~~~~~ 758 (759)
++...
T Consensus 623 ~~~~~ 627 (628)
T TIGR02316 623 RRAME 627 (628)
T ss_pred HHHhh
Confidence 88643
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-86 Score=777.24 Aligned_cols=598 Identities=27% Similarity=0.438 Sum_probs=491.8
Q ss_pred ChhHHHHHHHHHhhChHHHHHHhhcc-cccccccccccccccccccCCCcccccCCCccccHHHHHHhhccccc--CCCe
Q 004348 141 SPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAG--LGDK 217 (759)
Q Consensus 141 ~~~~~~~ll~~~~~~p~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~--~pd~ 217 (759)
-+++|.++++++++||+.||.+++++ +.|.++|.+ +++.+ +.+++||+++++|+++++|++++. . +||+
T Consensus 6 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~------~~~~~wf~~~~~n~~~~~l~~~~~-~~~~~~~ 77 (647)
T PTZ00237 6 DPFDYENDSNYANSNPESFWDEVAKKYVHWDKMYDK-VYSGD------EIYPDWFKGGELNTCYNVLDIHVK-NPLKRDQ 77 (647)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHhcCeeeCCccc-ccCCC------CCchhhCCCCeeeHHHHHHHHhhc-ccCCCCc
Confidence 36889999999999999999999987 789999888 65321 123599999999999999999886 4 7999
Q ss_pred EEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHH
Q 004348 218 VAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297 (759)
Q Consensus 218 ~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~ 297 (759)
+|+++..+..+..+++||+||+++++++|+.|+++||++||+|+|+++|++|+++++|||+++|++++|+++.++.+++.
T Consensus 78 ~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~ 157 (647)
T PTZ00237 78 DALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLI 157 (647)
T ss_pred eEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHH
Confidence 99999754323357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccc----cc-CCCCccchhhhc
Q 004348 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT----KW-QDGRDIWWQDVV 372 (759)
Q Consensus 298 ~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~~-~~~~~~~~~~~~ 372 (759)
++|++++|++||+++...++.+.+.+.+.+.+++... .....+++++........... .. .......|++++
T Consensus 158 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (647)
T PTZ00237 158 DRIETITPKLIITTNYGILNDEIITFTPNLKEAIELS---TFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEI 234 (647)
T ss_pred HHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcc---cCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHH
Confidence 9999999999999887777777777777776655421 012345554422110000000 00 001234566654
Q ss_pred CCC-----CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHH
Q 004348 373 PKY-----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447 (759)
Q Consensus 373 ~~~-----~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~ 447 (759)
... ..........++|+++|+|||||||+||||+++|++++..........++..++|++++.++++|+.++ ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~-~~ 313 (647)
T PTZ00237 235 KKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFH-GF 313 (647)
T ss_pred hhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeH-HH
Confidence 321 111223456789999999999999999999999999655544444556778889999999999999875 46
Q ss_pred HHHHhhcCcEEEEecCCCCCC--ChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcc---cccCCCCCeeEEEEeCCCCC
Q 004348 448 TYGPMLNGASVVVFEGAPTYP--DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY---VTRYSRKSLRVLGSVGEPIN 522 (759)
Q Consensus 448 ~~~~L~~G~tlvl~~~~~~~~--d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~---~~~~~l~sLr~v~~gGe~l~ 522 (759)
++++|+.|++++++++.+..+ .++.+|++|++++||+++++|++++.|++...+. ....++++||.+++|||+++
T Consensus 314 ~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~ 393 (647)
T PTZ00237 314 LYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIE 393 (647)
T ss_pred HHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCC
Confidence 889999999999998743221 2789999999999999999999999998764321 23457899999999999999
Q ss_pred HHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCC
Q 004348 523 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602 (759)
Q Consensus 523 ~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~ 602 (759)
+++++++++.+| +++++.||+||++++.+.... ......+++|+|++|++++|+|++|++++.|+.|||+|++|+|
T Consensus 394 ~~~~~~~~~~~g---~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~ 469 (647)
T PTZ00237 394 ESIPEYIENKLK---IKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMP 469 (647)
T ss_pred HHHHHHHHHhcC---CCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCC
Confidence 999999999987 789999999999865543322 1122347899999999999999999999999999999999874
Q ss_pred -cccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeE
Q 004348 603 -GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGV 662 (759)
Q Consensus 603 -~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~ 662 (759)
+++.|||++++++.+ +|...+|||+|||+|+ +|+||+|.|||++|.+||.|.||+|+++
T Consensus 470 p~~~~gy~~~~~~~~~-~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~ 548 (647)
T PTZ00237 470 PSFATTFYKNDEKFKQ-LFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGI 548 (647)
T ss_pred chhhCceeCCHHHHHH-HHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEee
Confidence 999999999999985 5565689999999998 8999999999999999999999999999
Q ss_pred ecCCCCeEEEEEEEEcCCC---CCc-HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCC
Q 004348 663 EHEVKGQGIYAFVTLVEGV---PYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDEL 738 (759)
Q Consensus 663 ~~~~~~~~lva~Vv~~~~~---~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~ 738 (759)
+++..++.++|||+++++. ..+ +++.++|+++++++|++|++|+.|+++++||+|+||||+|+.|++++.+. +.
T Consensus 549 ~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~--~~ 626 (647)
T PTZ00237 549 YDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS--NY 626 (647)
T ss_pred EcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC--CC
Confidence 9998899999999998542 222 46678999999999999999999999999999999999999999998765 45
Q ss_pred CCCCCCCChhhHHHHHhhh
Q 004348 739 GDTSTLADPGVVDQLIALA 757 (759)
Q Consensus 739 ~~~~~~~~p~~~~~~~~~~ 757 (759)
.+++|++||++++++++..
T Consensus 627 ~~~~~~~~~~~~~~~~~~~ 645 (647)
T PTZ00237 627 QLPDNVNDSEIFYKIKELY 645 (647)
T ss_pred CCCccccCHHHHHHHHHHh
Confidence 7899999999999998754
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-85 Score=769.50 Aligned_cols=597 Identities=38% Similarity=0.691 Sum_probs=505.3
Q ss_pred hhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEE
Q 004348 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221 (759)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~ 221 (759)
+.+|.++++++++||+.||.++++.+.|.++|.+ +++.+ .+.+++||+++++|.++++|+++++ .+|+++|++
T Consensus 1 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~A~~ 73 (629)
T PRK10524 1 MMSYSEFYQRSIDDPEAFWAEQARRIDWQTPFTQ-VLDYS-----NPPFARWFVGGRTNLCHNAVDRHLA-KRPEQLALI 73 (629)
T ss_pred ChhHHHHHHHHhcCHHHHHHHHHHhCCcccCchh-hccCC-----CCCcCccCCCcEeeHHHHHHHHhhc-cCCCCeEEE
Confidence 3579999999999999999999888999999988 75321 1124599999999999999999988 899999999
Q ss_pred EEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 004348 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIM 301 (759)
Q Consensus 222 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~ 301 (759)
+.+.+.+..+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++|+
T Consensus 74 ~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~ 153 (629)
T PRK10524 74 AVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARID 153 (629)
T ss_pred EEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHH
Confidence 86533344689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCC-CCCC
Q 004348 302 DCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCE 380 (759)
Q Consensus 302 ~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 380 (759)
+++++++|+++...++++.+.+++.+.+++.... .....+++++.... ........+..|.+...... ...+
T Consensus 154 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (629)
T PRK10524 154 DAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ---HKPRHVLLVDRGLA----PMARVAGRDVDYATLRAQHLGARVP 226 (629)
T ss_pred hcCCcEEEEccCcccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCC----CcCcccCCcccHHHHHhcCCCCCCC
Confidence 9999999999888788888888887777665431 23455666543211 11112223445655443321 1222
Q ss_pred ccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEE
Q 004348 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (759)
Q Consensus 381 ~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl 460 (759)
.....+++++||+|||||||.||||+++|++++..........++++++|++++.++++|+.++.+.++.+|++|+++++
T Consensus 227 ~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~ 306 (629)
T PRK10524 227 VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIM 306 (629)
T ss_pred ceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEE
Confidence 33456899999999999999999999999997766666666678999999999999999999988889999999999999
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccE
Q 004348 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (759)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l 540 (759)
+++.+..+++..++++|+++++|+++++|++++.|.+.........++++||.+++|||++++++++++.+.++ +++
T Consensus 307 ~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~---~~v 383 (629)
T PRK10524 307 YEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALG---VPV 383 (629)
T ss_pred ECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcC---CCe
Confidence 98877677999999999999999999999999999876543334567899999999999999999999999887 789
Q ss_pred eeeeccccccceecccCCC--CCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCC-cccccccCChhhHH
Q 004348 541 SDTWWQTETGGFMITPLPG--AWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWP-GAFRTLYGDHERYE 616 (759)
Q Consensus 541 ~n~YG~TE~~~~~~~~~~~--~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~-~v~~GY~~~~e~~~ 616 (759)
++.||+||++..++..... ....+++++|+|++|++++|+|+ +|++++.|+.|||+|+||++ +++.|||++++++.
T Consensus 384 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~ 463 (629)
T PRK10524 384 IDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFV 463 (629)
T ss_pred EeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHH
Confidence 9999999998533322221 12345678999999999999999 99999999999999999763 78999999999999
Q ss_pred hhhcccC-CcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEE
Q 004348 617 TTYFKPF-PGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVT 676 (759)
Q Consensus 617 ~~~~~~~-~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv 676 (759)
+.||... +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++++++..++.+++||+
T Consensus 464 ~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv 543 (629)
T PRK10524 464 KTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVV 543 (629)
T ss_pred HhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEE
Confidence 9887543 47999999987 899999999999999999999999999999888999999999
Q ss_pred EcCCCCC-----cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhHH
Q 004348 677 LVEGVPY-----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVD 751 (759)
Q Consensus 677 ~~~~~~~-----~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~~ 751 (759)
++++... .+.+.++|+++++++|++|++|..|+++++||+|+|||++|+.|++++.++ ...+.++++||++++
T Consensus 544 ~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~--~~~~~~~~~~~~~~~ 621 (629)
T PRK10524 544 PKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR--DPGDLTTIEDPAALQ 621 (629)
T ss_pred ECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC--CCCCcccccCHHHHH
Confidence 9865432 235678999999999999999999999999999999999999999998764 467899999999999
Q ss_pred HHHhhh
Q 004348 752 QLIALA 757 (759)
Q Consensus 752 ~~~~~~ 757 (759)
+|++..
T Consensus 622 ~~~~~~ 627 (629)
T PRK10524 622 QIRQAL 627 (629)
T ss_pred HHHHHh
Confidence 998753
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-84 Score=759.64 Aligned_cols=591 Identities=23% Similarity=0.413 Sum_probs=495.2
Q ss_pred hhHHHHHHHHHhhChHHHHHHhhcc--cccccccccccccccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEE
Q 004348 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (759)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~A 219 (759)
+..|.++++++++||+.||.++++. +.|..+|.+ +++... +.+++||.++++|.+.+++++ +++++|
T Consensus 34 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~wf~~~~~n~~~~~~~~-----~~~~~a 102 (652)
T TIGR01217 34 EGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCAR-VVDDRT-----MPGAQWFPGARLNYAENLLRA-----AGTEPA 102 (652)
T ss_pred hhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCce-eeeCCC-----CCCCEECCCCeeeHHHHHhcc-----CCCCeE
Confidence 4789999999999999999999876 889999888 653211 123599999999999999973 457899
Q ss_pred EEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHH
Q 004348 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (759)
Q Consensus 220 l~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~i 299 (759)
+++.++. +..+++||+||.++++++|+.|+++|+++||+|+|+++|++|+++++|||+++|++++|++|.++.+++.++
T Consensus 103 ~~~~~~~-~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~ 181 (652)
T TIGR01217 103 LLYVDET-HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDR 181 (652)
T ss_pred EEEECCC-CCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHH
Confidence 9997543 345789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCC-CCC
Q 004348 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTK 378 (759)
Q Consensus 300 l~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 378 (759)
|++++|++||+++...++++.+.+.+.+.++...+ +.++.++++........ ... ......+|++++... ...
T Consensus 182 l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 255 (652)
T TIGR01217 182 FQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKEL----PTLRAVVHIPYLGPRET-EAP-KIDGALDLEDFTAAAQAAE 255 (652)
T ss_pred HHhcCCcEEEEccccccCCcccchHHHHHHHHhcC----CCccEEEEEeCCCCccc-ccc-cccCcccHHHHHhcccCCC
Confidence 99999999999998888888888888877766554 55666666543211000 000 011245566665432 112
Q ss_pred CCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEE
Q 004348 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458 (759)
Q Consensus 379 ~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tl 458 (759)
.......++++++|+|||||||.||||+++|++++.+........++++++|+++++++++|+++ .+ ++.+|+.|+++
T Consensus 256 ~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~-~~~~l~~G~t~ 333 (652)
T TIGR01217 256 LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NW-LVSGLATGATL 333 (652)
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HH-HHHHHhcCcEE
Confidence 22334567999999999999999999999999977666666666789999999999999999864 33 56899999999
Q ss_pred EEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCc
Q 004348 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (759)
Q Consensus 459 vl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~ 538 (759)
+++++.+.++++..++++++++++|++.++|++++.|.+.........++++||.+++|||++++++++++.+.++. ++
T Consensus 334 vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~-~~ 412 (652)
T TIGR01217 334 VLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKA-DV 412 (652)
T ss_pred EEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCC-Cc
Confidence 99987766678999999999999999999999998887653322345678999999999999999999999998874 46
Q ss_pred cEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChh--hHH
Q 004348 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616 (759)
Q Consensus 539 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e--~~~ 616 (759)
.+.+.||+||+++......+ ..+...+++|.|.+|++++|+|++|++++ |+.|||+|+||+|+++.|||++++ ++.
T Consensus 413 ~~~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~v~ivd~~g~~~~-g~~GEl~v~gp~p~~~~gy~~~~~~t~~~ 490 (652)
T TIGR01217 413 WLASISGGTDICSCFAGANP-TLPVHIGEIQAPGLGTAVQSWDPEGKPVT-GEVGELVCTNPMPSMPIRFWNDPDGSKYR 490 (652)
T ss_pred eEEeccCHHHHhccccCCCC-CCCCcCCccCCCcCCCceEEECCCCCCCC-CCccEEEEecCCCccccceeCCCccchhH
Confidence 78899999997543332211 12345678999999999999999999994 899999999988899999999997 455
Q ss_pred hhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEE
Q 004348 617 TTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677 (759)
Q Consensus 617 ~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 677 (759)
+.||..++|||+|||+|+ +|+||+|.|||++|.+||+|.||+|++++++..++.++|||++
T Consensus 491 ~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~ 570 (652)
T TIGR01217 491 DAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHL 570 (652)
T ss_pred HhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEE
Confidence 677777789999999998 8999999999999999999999999999999889999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhHHHHHhhh
Q 004348 678 VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALA 757 (759)
Q Consensus 678 ~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 757 (759)
+++...++++.++|+++++++|++|++|+.|+++++||+|+||||+|+.|++++.++ +..+.++++||+++++|++++
T Consensus 571 ~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 648 (652)
T TIGR01217 571 APGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGT--PVDNPGAIDNPELLDLYEELA 648 (652)
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCC--CCCCcccccCHHHHHHHHHHH
Confidence 887766677788999999999999999999999999999999999999999998764 467899999999999998864
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-83 Score=756.05 Aligned_cols=593 Identities=27% Similarity=0.450 Sum_probs=498.1
Q ss_pred hhHHHHHHHHHhhChHHHHHHhhcc--cccccccccccccccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEE
Q 004348 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (759)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~A 219 (759)
+..|.++++++++||+.||.++++. +.|..+|.. +++. ... .+++||.++++|.+++++++ .+|+++|
T Consensus 33 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~-~~~~-~~~----~~~~wf~~~~~n~~~~~~~~----~~~~~~A 102 (655)
T PRK03584 33 FDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTV-VLAG-RRM----PGARWFPGARLNYAENLLRH----RRDDRPA 102 (655)
T ss_pred hHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcE-eecC-CCC----CCCeeCCCCEeeHHHHhhcc----CCCCCeE
Confidence 4789999999999999999999765 788888877 5421 111 13599999999999999874 4799999
Q ss_pred EEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHH
Q 004348 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (759)
Q Consensus 220 l~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~i 299 (759)
+++.++. +..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 103 l~~~~~~-~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~ 181 (655)
T PRK03584 103 IIFRGED-GPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDR 181 (655)
T ss_pred EEEECCC-CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHH
Confidence 9987543 446789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCC-CCC
Q 004348 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTK 378 (759)
Q Consensus 300 l~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 378 (759)
|++++++++|+++....+.+.+.....+.+....+ +.+..+++++.... ............|++.+... ...
T Consensus 182 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 254 (655)
T PRK03584 182 FGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAAL----PSLEHVVVVPYLGP---AAAAAALPGALLWEDFLAPAEAAE 254 (655)
T ss_pred HHHcCCcEEEEccccccCCcccchHHHHHHHHhcC----CCccEEEEEecCCC---cccccccCCcccHHHHhhccccCC
Confidence 99999999999988877777777777776665544 45566666543210 00011122345576665421 122
Q ss_pred CCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEE
Q 004348 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458 (759)
Q Consensus 379 ~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tl 458 (759)
.......+++++||+|||||||.||||+++|++++.+........+++.++|+++++++++|+.+. .++++|+.|+++
T Consensus 255 ~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~ 332 (655)
T PRK03584 255 LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATL 332 (655)
T ss_pred CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEE
Confidence 233456789999999999999999999999999776666666777899999999999999998653 367899999999
Q ss_pred EEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCc
Q 004348 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (759)
Q Consensus 459 vl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~ 538 (759)
+++++.+..+++..++++|+++++|++.++|++++.|.+.........++++||.+++|||++++++++++.+.++. ++
T Consensus 333 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~-~~ 411 (655)
T PRK03584 333 VLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKA-DV 411 (655)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCC-Cc
Confidence 99988776779999999999999999999999999998754332344678999999999999999999999999864 48
Q ss_pred cEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChh--hHH
Q 004348 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616 (759)
Q Consensus 539 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e--~~~ 616 (759)
++.+.||+||+++......+ ..+.+++++|.|++|++++|+|++|+++ .|+.|||+|+||+|+++.|||++++ ++.
T Consensus 412 ~~~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~ 489 (655)
T PRK03584 412 WLASISGGTDICSCFVGGNP-LLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYR 489 (655)
T ss_pred eEEeccChHhhhcccccCCC-CCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHH
Confidence 89999999998654332221 1235678899999999999999999999 7899999999988899999999997 556
Q ss_pred hhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEE
Q 004348 617 TTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677 (759)
Q Consensus 617 ~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 677 (759)
..||..++|||+|||+|+ +|+||+|.|||++|.+||.|.+|+|++++++..++.+++||++
T Consensus 490 ~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~ 569 (655)
T PRK03584 490 DAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVL 569 (655)
T ss_pred HhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEE
Confidence 777777789999999998 8999999999999999999999999999998889999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc-CCCCCCCCCCChhhHHHHHhh
Q 004348 678 VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL-DELGDTSTLADPGVVDQLIAL 756 (759)
Q Consensus 678 ~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 756 (759)
+++...++++.++|+++|+++|++|++|+.|+++++||+|+||||+|+.|++++.+.. ..+.+.++++||++++.|++.
T Consensus 570 ~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (655)
T PRK03584 570 AEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRPVKKAVNRDALANPEALDWFADL 649 (655)
T ss_pred CCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCCCCCCCCCcccccCHHHHHHHHHH
Confidence 8876656667789999999999999999999999999999999999999999987652 223489999999999999886
Q ss_pred h
Q 004348 757 A 757 (759)
Q Consensus 757 ~ 757 (759)
+
T Consensus 650 ~ 650 (655)
T PRK03584 650 A 650 (655)
T ss_pred H
Confidence 4
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=719.41 Aligned_cols=563 Identities=25% Similarity=0.387 Sum_probs=458.1
Q ss_pred hhHHHHHHHHHhhChHHHHHHhhcc--ccccccccccccccc-ccccCCCcccccCCCccccHHHHHHhhcccccCCCeE
Q 004348 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSEN-LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKV 218 (759)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~l~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~ 218 (759)
+.+|..+++++++||+.||.++++. +.|.+++.+ +++.. ..+ ...+||+++++|.++++|+++++ .+||++
T Consensus 119 ~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~wf~g~~ln~~~~~l~~~~~-~~pd~~ 192 (728)
T PLN03052 119 ISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRC-ILDTSDESN----PGGQWLPGAVLNVAECCLTPKPS-KTDDSI 192 (728)
T ss_pred hhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCce-eecCCCCCC----CCCEECCCCEeEHHHHHHHHHhc-cCCCCe
Confidence 4789999999999999999999875 578888887 66321 122 12489999999999999999877 799999
Q ss_pred EEEEEcCC--CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHH
Q 004348 219 AIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSL 296 (759)
Q Consensus 219 Al~~~~~~--~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l 296 (759)
|+++.++. ++..+++||+||+++++++|+.|+++|+++||+|+++++|++|+++++|||+++|++++|++|+++.+++
T Consensus 193 Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l 272 (728)
T PLN03052 193 AIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEI 272 (728)
T ss_pred EEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHH
Confidence 99998542 1134689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCC
Q 004348 297 AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 376 (759)
Q Consensus 297 ~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (759)
.+++++++|++||+++...++++.+.+...+.+... ..++++....... .. .....+..|++++....
T Consensus 273 ~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~---------~~~iv~~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 340 (728)
T PLN03052 273 ATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA---------PKAIVLPADGKSV--RV-KLREGDMSWDDFLARAN 340 (728)
T ss_pred HHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC---------CcEEEEeCCCCcc--cc-ccccCCccHHHHHhccc
Confidence 999999999999999888777777776555443221 1234333221000 00 00113456776654321
Q ss_pred -----CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHH
Q 004348 377 -----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451 (759)
Q Consensus 377 -----~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~ 451 (759)
...+.....+++++||+|||||||+||||+++|++++.. .......++++++|+++++++++|+++. +.++++
T Consensus 341 ~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~-~~~~~~~~~l~~~d~~~~~~~l~w~~g~-~~v~~~ 418 (728)
T PLN03052 341 GLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRA-AADAWAHLDIRKGDIVCWPTNLGWMMGP-WLVYAS 418 (728)
T ss_pred cccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHH-HHHHHHhcCCCCCcEEEECCCcHHHhHH-HHHHHH
Confidence 111222335789999999999999999999999985443 3334445789999999999999999995 678899
Q ss_pred hhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHH
Q 004348 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531 (759)
Q Consensus 452 L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 531 (759)
|++|++++++++. +++..+++++++++||++.++|++++.|.+... ....++++||.+++|||+++++.+.|+.+
T Consensus 419 L~~Gat~vl~~g~---p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~--~~~~dlssLr~i~s~Ge~l~~~~~~~~~~ 493 (728)
T PLN03052 419 LLNGATLALYNGS---PLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRCFGSTGEASSVDDYLWLMS 493 (728)
T ss_pred HHhCCEEEEeCCC---CCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC--cccCChhheeEEEecCCCCCHHHHHHHHH
Confidence 9999999999875 355679999999999999999999999987653 24568899999999999999999999998
Q ss_pred HhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCc--eEEEEEecCCCccccccc
Q 004348 532 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC--SGYLCIKSSWPGAFRTLY 609 (759)
Q Consensus 532 ~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~--~GEL~I~g~~~~v~~GY~ 609 (759)
.++. .+++|.||+||+++..+...+ ..+..++++|+|++|++++|+|++|++++.|+ .|||+|++++++...+|+
T Consensus 494 ~~~~--~~i~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~ 570 (728)
T PLN03052 494 RAGY--KPIIEYCGGTELGGGFVTGSL-LQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLL 570 (728)
T ss_pred hcCC--CCeEeeccChhhCcccccCCC-CCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCcccc
Confidence 8762 579999999999865443222 12345688999999999999999999999985 599999987677788999
Q ss_pred CChhhHHhhhcccCC---c--EEEeCCeee-------------------ccEeeCHHHHHHHHh-cCCccceEEEEeEec
Q 004348 610 GDHERYETTYFKPFP---G--YYFTGDGCS-------------------SGHRIGTAEVESALV-SHPQCAEAAVVGVEH 664 (759)
Q Consensus 610 ~~~e~~~~~~~~~~~---g--~y~TGDl~~-------------------~G~rI~~~eIE~~L~-~~p~V~ea~Vv~~~~ 664 (759)
++. ....||..++ | ||+|||+++ +|+||+|.|||++|. .||.|.||+|+++++
T Consensus 571 ~~~--~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d 648 (728)
T PLN03052 571 NAD--HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPP 648 (728)
T ss_pred Cch--hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeec
Confidence 874 3355664322 4 999999988 899999999999995 899999999999999
Q ss_pred CCCC-eEEEEEEEEc--CCCCCc-HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 665 EVKG-QGIYAFVTLV--EGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 665 ~~~~-~~lva~Vv~~--~~~~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+..+ +.+++||+++ ++...+ +++.+.|+++|+++|+++++|+.|+++++||+|+||||+|+.|++.+...
T Consensus 649 ~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~ 722 (728)
T PLN03052 649 PGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQE 722 (728)
T ss_pred CCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhh
Confidence 8665 8999999997 554433 67888899999999999999999999999999999999999999988654
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=782.54 Aligned_cols=556 Identities=19% Similarity=0.237 Sum_probs=457.2
Q ss_pred CCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccc-cc
Q 004348 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SE 180 (759)
Q Consensus 102 ~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~~ 180 (759)
...++|||++.+.. .+++.+.++|++++|+++++++++++|..+|++++++|++.++++.. +.. .+... ++ .+
T Consensus 3011 ~~~~~~~l~l~~~~---~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~-l~~-~~~~~-~~~~~ 3084 (3956)
T PRK12467 3011 REQTNYPLTLAVGL---GDTLELEFSYDRQHFDAAAIERLAESFDRLLQAMLNNPAARLGELPT-LAA-HERRQ-VLHAW 3084 (3956)
T ss_pred cccccCceEEEecc---CcceeEEEEechhhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccC-CCH-HHHHH-HHHhh
Confidence 34578999988764 24688899999999999999999999999999999999999998852 111 11111 11 11
Q ss_pred cccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 004348 181 NLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260 (759)
Q Consensus 181 ~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V 260 (759)
+.... .+ ....+++++|+++++ ++||++|+++. ++++||+||+++++++|+.|+++|+++|++|
T Consensus 3085 ~~~~~------~~---~~~~~~~~l~~~~a~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V 3148 (3956)
T PRK12467 3085 NATAA------AY---PSERLVHQLIEAQVA-RTPEAPALVFG------DQQLSYAELNRRANRLAHRLIAIGVGPDVLV 3148 (3956)
T ss_pred ccCCC------CC---CccccHHHHHHHHHH-hCCCcceEeeC------CcccCHHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence 11100 00 112378999999999 89999999987 6789999999999999999999999999999
Q ss_pred EEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCC
Q 004348 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS 340 (759)
Q Consensus 261 ai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 340 (759)
+|+++|++++++++|||+|+|++|+||||.+|.+|+.+++++++++++|++...... +.. ..
T Consensus 3149 ~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~-------------~~~-----~~ 3210 (3956)
T PRK12467 3149 GVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQ-------------LPA-----PA 3210 (3956)
T ss_pred EEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhh-------------ccc-----cc
Confidence 999999999999999999999999999999999999999999999999997653210 000 00
Q ss_pred ccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHH
Q 004348 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (759)
Q Consensus 341 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~ 420 (759)
...++.++... + .......+.....++++|||+|||||||+||||+++|++ +.+...+.
T Consensus 3211 ~~~~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~-l~~~~~~~ 3269 (3956)
T PRK12467 3211 GDTALTLDRLD----------------L----NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGA-LANHLCWI 3269 (3956)
T ss_pred CCceeeecchh----------------h----cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHH-HHHHHHHH
Confidence 11122222110 0 001112222345789999999999999999999999999 55666677
Q ss_pred HHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCC
Q 004348 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (759)
Q Consensus 421 ~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~ 500 (759)
...++++++|++++++|++|+.+ +++++.+|+.|+++++.++ ...++..+++.|++++||++.++|++++.|++...
T Consensus 3270 ~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~~--~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~ 3346 (3956)
T PRK12467 3270 AEAYELDANDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRDN--DLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG 3346 (3956)
T ss_pred HHhcCCCcCCEEEEecCccHhHH-HHHHHHHHhCCCEEEECCc--ccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc
Confidence 77899999999999999999988 6899999999999999872 23489999999999999999999999999987532
Q ss_pred cccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceE
Q 004348 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQP 577 (759)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~ 577 (759)
..++++||.+++|||+++++++++|.+.++ +++++|.||+||+++.++...... ......++|+|++|+++
T Consensus 3347 ----~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 3420 (3956)
T PRK12467 3347 ----GADCASLDIYVFGGEAVPPAAFEQVKRKLK--PRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSI 3420 (3956)
T ss_pred ----ccCCCCceEEEEecCCCCHHHHHHHHHhCC--CCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEE
Confidence 236789999999999999999999998876 488999999999987665422111 11234689999999999
Q ss_pred EEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc-----CCcEEEeCCeee------------------
Q 004348 578 VIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCS------------------ 634 (759)
Q Consensus 578 ~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~-----~~g~y~TGDl~~------------------ 634 (759)
+|+|++++++|.|+.|||+|+| +++++||+|+|+.|.+.|..+ ..+||||||+|+
T Consensus 3421 ~v~d~~~~~vp~G~~GEL~i~G--~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~ik 3498 (3956)
T PRK12467 3421 YVLDGQLNPVPVGVAGELYIGG--VGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVK 3498 (3956)
T ss_pred EEECCCCCCCCCCCCceEEEcc--hhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEe
Confidence 9999999999999999999999 999999999999999888642 235999999998
Q ss_pred -ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCC
Q 004348 635 -SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPG 713 (759)
Q Consensus 635 -~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~ 713 (759)
+|+||+|+|||++|.+||+|.+|+|++..+ ..++.++|||++...... ..++|+++++++||.||+|..|+++++
T Consensus 3499 i~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~---~~~~l~~~l~~~Lp~y~vP~~~~~l~~ 3574 (3956)
T PRK12467 3499 IRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGD---WRETLRDHLAASLPDYMVPAQLLVLAA 3574 (3956)
T ss_pred eceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcc---cHHHHHHHHhccCChhhCCCeeeeecc
Confidence 999999999999999999999999998754 467899999998765332 267899999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHhc
Q 004348 714 LPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 714 lP~T~~GKvdR~~L~~~~~~ 733 (759)
||+|+||||||++|++....
T Consensus 3575 lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3575 MPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred CCCCCCCccchhhcCCCCcc
Confidence 99999999999999987543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-74 Score=779.96 Aligned_cols=566 Identities=18% Similarity=0.237 Sum_probs=460.9
Q ss_pred CCCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhccccccccccccccc-
Q 004348 101 PSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCS- 179 (759)
Q Consensus 101 ~~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~- 179 (759)
...+++|||++.+.+. ++++...++|++++|+++++++++++|..+|++++++|+..++++.. ....+... ++.
T Consensus 1488 ~~~~~~~dL~l~v~~~--~~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~--~~~~~~~~-~~~~ 1562 (3956)
T PRK12467 1488 ESQTAQFDLTLDTYES--SEGLQASLTYATDLFEASTIERLAGHWLNLLQGLVADPERRLGELDL--LDEAERRQ-ILEG 1562 (3956)
T ss_pred CCcccccceEEEEEec--CCeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccc--cchHHhhh-hHHh
Confidence 3567899999988744 36788899999999999999999999999999999999999988742 11111111 111
Q ss_pred ccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004348 180 ENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259 (759)
Q Consensus 180 ~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 259 (759)
++... .+++. ..+++++|+++++ .+||++|+++. ++.+||+||+++++++|++|+++|+++|++
T Consensus 1563 ~~~~~-------~~~~~--~~~~~~~~~~~a~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~ 1626 (3956)
T PRK12467 1563 WNATH-------TGYPL--ARLVHQLIEDQAA-ATPEAVALVFG------EQELTYGELNRRANRLAHRLIALGVGPEVL 1626 (3956)
T ss_pred hcCCc-------cCCCc--cccHHHHHHHHHH-hCCCCeEEEeC------CcEEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 11110 11111 1368999999999 89999999986 678999999999999999999999999999
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCC
Q 004348 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339 (759)
Q Consensus 260 Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 339 (759)
|+|+++|++++++++|||+|+|++|+||||.+|.+|+.+++++++++++|++...... +... .
T Consensus 1627 V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~-------------~~~~----~ 1689 (3956)
T PRK12467 1627 VGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQAR-------------LPLP----D 1689 (3956)
T ss_pred EEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhh-------------Cccc----c
Confidence 9999999999999999999999999999999999999999999999999997653210 0000 0
Q ss_pred CccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHH
Q 004348 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419 (759)
Q Consensus 340 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~ 419 (759)
.. .++.++... +.........+.....++++|||+|||||||+||||+++|++ +.+...+
T Consensus 1690 ~~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~-l~~~~~~ 1749 (3956)
T PRK12467 1690 GL-RSLVLDQED------------------DWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGA-LVNRLCA 1749 (3956)
T ss_pred CC-cEEEecccc------------------chhccCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHH-HHHHHHH
Confidence 11 122222110 000111112222345689999999999999999999999999 5566666
Q ss_pred HHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcC
Q 004348 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499 (759)
Q Consensus 420 ~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~ 499 (759)
....++++++|++++++|++|+.+ ++++|.+|++|+++++.+.... .++..+++.|++++||++.++|++++.|.+..
T Consensus 1750 ~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~lvi~~~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~ 1827 (3956)
T PRK12467 1750 TQEAYQLSAADVVLQFTSFAFDVS-VWELFWPLINGARLVIAPPGAH-RDPEQLIQLIERQQVTTLHFVPSMLQQLLQMD 1827 (3956)
T ss_pred HHHhcCCCcccEEEEecCccHHHH-HHHHHHHHhCCCEEEEcChhhc-CCHHHHHHHHHHcCCeEEECCHHHHHHHHhhc
Confidence 777899999999999999999998 6899999999999999876433 48999999999999999999999999998742
Q ss_pred CcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC---CCCCCCCCcCCCCCCce
Q 004348 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---AWPQKPGSATFPFFGVQ 576 (759)
Q Consensus 500 ~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~~iG~p~~g~~ 576 (759)
. ...++++||.+++|||+++++++++|.+.++ +++++|.||+||+++.++..... .......++|+|++|++
T Consensus 1828 ~---~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~ 1902 (3956)
T PRK12467 1828 E---QVEHPLSLRRVVCGGEALEVEALRPWLERLP--DTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLS 1902 (3956)
T ss_pred c---ccccCCCceEEEEccccCCHHHHHHHHHhCC--CCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCE
Confidence 2 2235789999999999999999999999887 47899999999999766543211 11123578999999999
Q ss_pred EEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc-----CCcEEEeCCeee-----------------
Q 004348 577 PVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCS----------------- 634 (759)
Q Consensus 577 ~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~-----~~g~y~TGDl~~----------------- 634 (759)
++|+|++++++|.|+.|||+|+| +++++||+|+|+.+.+.|... ..+||+|||+|+
T Consensus 1903 ~~vld~~~~~vp~G~~GEl~i~G--~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qV 1980 (3956)
T PRK12467 1903 TYILDASLNPVPIGVAGELYLGG--VGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQV 1980 (3956)
T ss_pred EEEECCCCCCCCCCCceEEEecc--ccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceE
Confidence 99999999999999999999999 999999999999999888532 235999999998
Q ss_pred --ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCc-----HHHHHHHHHHHHhhcCCCccccE
Q 004348 635 --SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-----EELRKSLVLAVRKQIGAFAAPDK 707 (759)
Q Consensus 635 --~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~-----~~l~~~l~~~l~~~Lp~~~vP~~ 707 (759)
+|+||+|+|||++|.+||+|.+|+|++.+ ...++.++|||+..++.... ....++|+++++++||.||+|+.
T Consensus 1981 ki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~ 2059 (3956)
T PRK12467 1981 KIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAH 2059 (3956)
T ss_pred EeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchh
Confidence 99999999999999999999999999886 44678899999986543211 11357899999999999999999
Q ss_pred EEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 708 IHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 708 iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
|+++++||+|+||||||++|++.....
T Consensus 2060 ~~~l~~lP~t~~GKidr~~L~~~~~~~ 2086 (3956)
T PRK12467 2060 LVFLARMPLTPNGKLDRKALPAPDASE 2086 (3956)
T ss_pred hhhhhcCCCCCCCCcchhhCCCCcccc
Confidence 999999999999999999998765443
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-73 Score=723.02 Aligned_cols=590 Identities=18% Similarity=0.192 Sum_probs=453.1
Q ss_pred CCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhccccccccccccccccc
Q 004348 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSEN 181 (759)
Q Consensus 102 ~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (759)
...++|||++.+.+ .++++...++|++++|+++++++++++|..+|++++++|++++.++.. +. ..+.. .+...
T Consensus 152 ~~~~~~dl~~~v~~--~~~~l~l~~~y~~~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~-~~-~~~~~--~~~~~ 225 (1389)
T TIGR03443 152 STGSTTDLTVFLTP--SSPELELSIYYNSLLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSL-IT-PSQKS--LLPDP 225 (1389)
T ss_pred ccCCccceEEEEEe--cCCcEEEEEEEchhcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccC-CC-HHHHh--hhhcc
Confidence 35678999988774 447788999999999999999999999999999999999999988742 11 11100 11000
Q ss_pred ccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCC---CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCC
Q 004348 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258 (759)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd 258 (759)
.. ...|.. ...+++++|+++++ .+||++|+++.... ....+++||+||+++++++|++|++.|+++||
T Consensus 226 ---~~---~~~~~~--~~~~l~~~~~~~a~-~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~ 296 (1389)
T TIGR03443 226 ---TK---DLDWSG--FRGAIHDIFADNAE-KHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGD 296 (1389)
T ss_pred ---cc---ccCcCc--ccCcHHHHHHHHHH-hCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 00 013421 12368999999999 89999999864211 02357899999999999999999999999999
Q ss_pred EEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcC
Q 004348 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSG 338 (759)
Q Consensus 259 ~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 338 (759)
+|+|+++|++++++++|||+++|++++|++|.+|.+++.+++++++++++|+...... +...+...........
T Consensus 297 ~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~~~~~~~ 370 (1389)
T TIGR03443 297 VVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT------LDQLVRDYIDKELELR 370 (1389)
T ss_pred EEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc------cchhhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999998764211 0111111111000000
Q ss_pred CCccEEEEeccCccccccccccCCCCccchhhhcCCC---CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHH
Q 004348 339 ISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY---PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415 (759)
Q Consensus 339 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~ 415 (759)
..+..+ .+....... . ... ...+.+..... ..........+++++||+|||||||+||||+++|++ +.+
T Consensus 371 ~~~~~~-~~~~~~~~~--~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~-l~~ 442 (1389)
T TIGR03443 371 TEIPAL-ALQDDGSLV--G-GSL---EGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFS-LAY 442 (1389)
T ss_pred cccceE-Eeccccccc--c-ccc---ccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHH-HHH
Confidence 011111 111100000 0 000 00000000000 001111234688999999999999999999999999 455
Q ss_pred HHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHH
Q 004348 416 TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (759)
Q Consensus 416 ~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l 495 (759)
...+....+++.++|++++.++++|+.+ .+++|.+|+.|+++++.+.. ...++..+++.|++++||+++++|++++.|
T Consensus 443 ~~~~~~~~~~~~~~d~~~~~~~~~~d~~-~~~i~~~L~~G~~l~~~~~~-~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l 520 (1389)
T TIGR03443 443 YFPWMAKRFGLSENDKFTMLSGIAHDPI-QRDMFTPLFLGAQLLVPTAD-DIGTPGRLAEWMAKYGATVTHLTPAMGQLL 520 (1389)
T ss_pred HHHHHHHhcCCCCCCEEEEecCceecch-HHHHHHHHhCCCEEEEcChh-hccCHHHHHHHHHHhCCeEEEeCHHHHHHH
Confidence 5666777889999999999999999987 57899999999999997653 234788999999999999999999999998
Q ss_pred HhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC-CC--------CCCCC
Q 004348 496 MRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AW--------PQKPG 566 (759)
Q Consensus 496 ~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~-~~--------~~~~~ 566 (759)
..... ..+++||.+++|||++++.+.+++.+..+ +++++|.||+||++.+++..... .. .....
T Consensus 521 ~~~~~-----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1389)
T TIGR03443 521 SAQAT-----TPIPSLHHAFFVGDILTKRDCLRLQTLAE--NVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVM 593 (1389)
T ss_pred Hhccc-----ccCCCccEEEEecccCCHHHHHHHHHhCC--CCEEEECccCCccceeEEEEEccccccccchhhcccCcC
Confidence 75432 25789999999999999999999888765 58999999999998765432111 00 11346
Q ss_pred CcCCCCCCceEEEECCC--CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc-----------------------
Q 004348 567 SATFPFFGVQPVIVDEK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----------------------- 621 (759)
Q Consensus 567 ~iG~p~~g~~~~IvD~~--g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~----------------------- 621 (759)
++|+|++|++++|+|++ ++++|.|+.|||+|+| |++++||+|+|+.+.+.|..
T Consensus 594 ~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G--~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1389)
T TIGR03443 594 PAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRA--GGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREF 671 (1389)
T ss_pred cCCCccCCCEEEEECCccCCCcCCCCCceEEEecc--cccchhcCCChhHhhhhccCCcccCcccccccccccccccccc
Confidence 79999999999999974 5789999999999999 89999999999999988753
Q ss_pred ---cCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcC
Q 004348 622 ---PFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 679 (759)
Q Consensus 622 ---~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 679 (759)
+.+|||+|||+|+ +|+||+|.|||++|.+||.|.+++|++.++...++.++|||++..
T Consensus 672 ~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~ 751 (1389)
T TIGR03443 672 WLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQD 751 (1389)
T ss_pred cCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccC
Confidence 1357999999997 999999999999999999999999999888878889999999863
Q ss_pred CCC-C----------------------cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHH
Q 004348 680 GVP-Y----------------------SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731 (759)
Q Consensus 680 ~~~-~----------------------~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~ 731 (759)
... . ..+..++|+++++++||.||+|..|+++++||+|+||||||++|++.+
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~ 826 (1389)
T TIGR03443 752 KSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPD 826 (1389)
T ss_pred ccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCc
Confidence 211 0 011357899999999999999999999999999999999999997543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-72 Score=623.54 Aligned_cols=481 Identities=28% Similarity=0.459 Sum_probs=399.3
Q ss_pred CCCe-EEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCC
Q 004348 214 LGDK-VAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIG--VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290 (759)
Q Consensus 214 ~pd~-~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~G--v~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~ 290 (759)
.+++ +++++.... ++.+||+|+..++.|+|..|.++| +++||+|++++||++++++++|||+.+|+++.|++|.
T Consensus 29 ~~~~~~~~i~~~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~ 105 (537)
T KOG1176|consen 29 YLDRNTSLVYQDSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPR 105 (537)
T ss_pred cccCcceEEEecCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcc
Confidence 4444 888877432 589999999999999999999876 8999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC-CCCccc-h
Q 004348 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ-DGRDIW-W 368 (759)
Q Consensus 291 ~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~-~ 368 (759)
+.+.++.+.+++++++++|++.... +.+.++...+ . ..++++..... ..... ...... +
T Consensus 106 ~~~~ei~~~~~~s~~kiif~d~~~~---------~~i~~~~~~~-----~-~~i~~l~~~~~----~~~~~~~~~~~~~~ 166 (537)
T KOG1176|consen 106 LTASEIAKQLKDSKPKLIFVDEDFY---------DKISEATSKL-----A-LKIIVLTGDEG----VISISDLVEDLDAF 166 (537)
T ss_pred cCHHHHHHHHHhcCCeEEEEcCchH---------HHHHHHHhhc-----C-CceEEEecccC----ccccccccccccch
Confidence 9999999999999999999988753 3333333322 1 33444433210 00000 001111 3
Q ss_pred hhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHH
Q 004348 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (759)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~ 448 (759)
.+......... ......+|++.|+|||||||.||||++||++++.+.. .......+...|+.+++.|++|..|+...+
T Consensus 167 ~~~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~-~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~ 244 (537)
T KOG1176|consen 167 EDLMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTL-SIKIGWELTSDDVYLCTLPLFHIYGLITLL 244 (537)
T ss_pred hhccccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHH-HhhhcccCCCCceEEEechHHHHhHHHHHH
Confidence 33333222222 4456679999999999999999999999999655433 333445667789999999999999976554
Q ss_pred HHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHH
Q 004348 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528 (759)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 528 (759)
++.+..|+++++. ..++++.++++|++|+||+++++|.++..|++.+. ...++++++|.+++||.+++++++++
T Consensus 245 ~~~~~~~~~ii~~----~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~--~~~~~l~sl~~v~~gga~~~~~~~~~ 318 (537)
T KOG1176|consen 245 LSLLAGGTTIICL----RKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI--VKKYDLSSLRSVLSGGAPLSPATLEK 318 (537)
T ss_pred HHHHhCCceEEEC----CCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc--cCcccCCccEEEEecCCCCCHHHHHH
Confidence 4455555555553 23599999999999999999999999999999863 45679999999999999999999999
Q ss_pred HHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccc
Q 004348 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608 (759)
Q Consensus 529 ~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY 608 (759)
+.+++| ...+.+.||+||+++.++.+..... .+++++|++++|++..|.++.|+.+++++.||||++| +.++.||
T Consensus 319 ~~~~l~--~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg--~~imkGY 393 (537)
T KOG1176|consen 319 VKERLP--NVTVIQGYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRG--PQVMKGY 393 (537)
T ss_pred HHHhCC--CceEEEeeccccccCceeecCCCcc-CcccccCccccceEEEeeCCCCCCCCCCCceEEEEEC--cccchhh
Confidence 999998 4889999999999977665544332 5889999999999999999999999999999999999 9999999
Q ss_pred cCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCe
Q 004348 609 YGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669 (759)
Q Consensus 609 ~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 669 (759)
|+||+.|.+.|-. +|||+|||+|+ +|+.|+|.|||++|.+||.|.|||||+++|+..|+
T Consensus 394 ~~NpeaT~~~~~~--~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge 471 (537)
T KOG1176|consen 394 LKNPEATKEAFDD--DGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGE 471 (537)
T ss_pred cCChHHHHhhccc--CCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCC
Confidence 9999999988854 49999999998 89999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 670 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 670 ~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
.++||||.+++...+ .++|+++++++|++|++|..++|+++||+|+||||.|+.|++.+...
T Consensus 472 ~p~A~VV~k~g~~lt---e~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 472 TPAAFVVLKKGSTLT---EKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred cceEEEEecCCCcCC---HHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence 999999999876665 68999999999999999999999999999999999999999998753
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-73 Score=776.47 Aligned_cols=563 Identities=18% Similarity=0.214 Sum_probs=456.9
Q ss_pred CCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccc-ccc
Q 004348 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SEN 181 (759)
Q Consensus 103 ~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~~~ 181 (759)
..++|||++.+.++ +.+...+.|++++|+++++++++++|.++|++++++|+..++++.. +. ..+... .+ .++
T Consensus 3637 ~~~~~~l~~~~~~~---~~l~~~l~y~~~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~ 3710 (4334)
T PRK05691 3637 THTNFPLTAVCYPG---DDLGLHLSYDQRYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPL-LG-EQERDF-LLDGCN 3710 (4334)
T ss_pred cccCCCeEEEEecC---CceEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCC-CC-HHHHHH-HHHhhC
Confidence 45789998876543 4577899999999999999999999999999999999999988852 11 111111 11 011
Q ss_pred ccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004348 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (759)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 261 (759)
.... .+ ....+++++|+++++ ++||++|+++. +.++||+||+++++++|++|+++||++|++|+
T Consensus 3711 ~~~~------~~---~~~~~~~~~~~~~~~-~~p~~~Av~~~------~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~ 3774 (4334)
T PRK05691 3711 RSER------DY---PLEQSYVRLFEAQVA-AHPQRIAASCL------DQQWSYAELNRAANRLGHALRAAGVGVDQPVA 3774 (4334)
T ss_pred CccC------CC---ccccCHHHHHHHHHH-hCCCceEEEcC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 1000 01 112378999999999 89999999987 67899999999999999999999999999999
Q ss_pred EEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004348 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (759)
Q Consensus 262 i~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 341 (759)
|+++++++++++||||+|+|++||||||.+|.+|+.+|+++++++++|+++..... .......+.. ...
T Consensus 3775 v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~---------~~~~~~~~~~--~~~ 3843 (4334)
T PRK05691 3775 LLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQ---------ARALLDELGC--ANR 3843 (4334)
T ss_pred EEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccch---------hhhhhccccc--ccc
Confidence 99999999999999999999999999999999999999999999999998764321 0111111100 001
Q ss_pred cEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH
Q 004348 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (759)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (759)
..+++.+... ....+...+.....++++|||+|||||||+||||+++|++ +.+...+..
T Consensus 3844 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~-~~~~~~~~~ 3902 (4334)
T PRK05691 3844 PRLLVWEEVQ--------------------AGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRG-MLNNQLSKV 3902 (4334)
T ss_pred cceeeecccc--------------------cccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHH-HHHHHHHHH
Confidence 1122111110 0000111222345789999999999999999999999999 555566667
Q ss_pred HHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc
Q 004348 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (759)
Q Consensus 422 ~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~ 501 (759)
..++++++|+++++++++|+.+ ++++|.+|+.|+++++++.... .++..+++.+++++||++.++|++++.|+....
T Consensus 3903 ~~~~~~~~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~i~~~~~~-~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~- 3979 (4334)
T PRK05691 3903 PYLALSEADVIAQTASQSFDIS-VWQFLAAPLFGARVEIVPNAIA-HDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR- 3979 (4334)
T ss_pred HhcCCCccceEEEecCCchhHH-HHHHHHHHhCCCEEEEcCcccc-CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc-
Confidence 7799999999999999999998 6899999999999999886544 489999999999999999999999998876532
Q ss_pred ccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC--CCCCCCCcCCCCCCceEEE
Q 004348 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVI 579 (759)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~~iG~p~~g~~~~I 579 (759)
..+++||.+++|||+++++++++|.+.++ +++++|.||+||++..++...... ......++|+|++|++++|
T Consensus 3980 ----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v 4053 (4334)
T PRK05691 3980 ----QALDGLRWMLPTGEAMPPELARQWLQRYP--QIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYL 4053 (4334)
T ss_pred ----ccCCCceEEEecCCcCCHHHHHHHHHhCC--CCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEE
Confidence 25689999999999999999999998876 589999999999998665432111 1223457999999999999
Q ss_pred ECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc-----CCcEEEeCCeee-------------------c
Q 004348 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCS-------------------S 635 (759)
Q Consensus 580 vD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~-----~~g~y~TGDl~~-------------------~ 635 (759)
+|++++++|.|+.|||+|+| +++++||+|+|++|.+.|..+ ..+||||||+|+ +
T Consensus 4054 ~d~~~~~~p~g~~GEL~i~G--~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~ 4131 (4334)
T PRK05691 4054 LDEALELVPLGAVGELCVAG--TGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIR 4131 (4334)
T ss_pred ECCCCCCCCCCCceEEEEec--ccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEec
Confidence 99999999999999999999 999999999999999988642 346999999998 9
Q ss_pred cEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCC
Q 004348 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 715 (759)
Q Consensus 636 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP 715 (759)
|+||+++|||++|.++|+|.+|+|+... ...++.++|||+.........+..++|+++|+++||+||+|+.|+.+++||
T Consensus 4132 G~riel~eIE~~l~~~~~v~~a~v~~~~-~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP 4210 (4334)
T PRK05691 4132 GYRIELGEIEARLHEQAEVREAAVAVQE-GVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLP 4210 (4334)
T ss_pred eEEecHHHHHHHHHhCCCccEEEEEEec-CCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCC
Confidence 9999999999999999999999887654 445678999999876654444557889999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHH
Q 004348 716 KTRSGKIMRRILRKIA 731 (759)
Q Consensus 716 ~T~~GKvdR~~L~~~~ 731 (759)
+|+||||||++|+++.
T Consensus 4211 ~t~~GKidr~~L~~~~ 4226 (4334)
T PRK05691 4211 LNANGKLDRKALPALD 4226 (4334)
T ss_pred CCCCCcccHhhcCCCc
Confidence 9999999999998763
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-72 Score=714.35 Aligned_cols=553 Identities=19% Similarity=0.268 Sum_probs=445.3
Q ss_pred CcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhccccccccccccccccccccc
Q 004348 106 KISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185 (759)
Q Consensus 106 ~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 185 (759)
.+||.+.+... .++++...++|++++|+++++++++++|..+|++++++|+.+++++.. +...+ ... ...++....
T Consensus 378 ~~dl~l~~~~~-~~~~l~~~~~y~~~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~-~~~~~-~~~-~~~~~~~~~ 453 (1296)
T PRK10252 378 VNDLELALFPD-EHGGLSIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDVDI-LLPGE-YAQ-LAQVNATAV 453 (1296)
T ss_pred cCCeEEEEEEC-CCCcEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCC-CCHHH-HHH-HHHhcCCCC
Confidence 46887776532 235678899999999999999999999999999999999999988742 11111 000 000000000
Q ss_pred CCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 004348 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265 (759)
Q Consensus 186 ~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~ 265 (759)
.+ ...+++++|+++++ .+||++|+++. ++.+||+||+++++++|+.|.+.|+++||+|+|+++
T Consensus 454 ------~~----~~~~l~~~~~~~~~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~ 516 (1296)
T PRK10252 454 ------EI----PETTLSALVAQQAA-KTPDAPALADA------RYQFSYREMREQVVALANLLRERGVKPGDSVAVALP 516 (1296)
T ss_pred ------CC----CcCCHHHHHHHHHH-hCCCCeEEEcC------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Confidence 11 11268899999998 89999999976 678999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEE
Q 004348 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (759)
Q Consensus 266 ~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi 345 (759)
|++++++++|||+++|++|+|+||++|.+++.+++++++++++|+++..... .... ..+. ++
T Consensus 517 ~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~-------------~~~~----~~~~-~~ 578 (1296)
T PRK10252 517 RSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPR-------------FADV----PDLT-SL 578 (1296)
T ss_pred CCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhh-------------cccC----CCce-ee
Confidence 9999999999999999999999999999999999999999999997653210 0000 0010 11
Q ss_pred EeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC
Q 004348 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (759)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (759)
.++.. ... ....+.....++++|||+|||||||+||||+++|++ +.+...+....++
T Consensus 579 ~~~~~---------------------~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~-l~~~~~~~~~~~~ 635 (1296)
T PRK10252 579 CYNAP---------------------LAP-QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTA-IVNRLLWMQNHYP 635 (1296)
T ss_pred ecccc---------------------ccc-ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHH-HHHHHHHHHHhcC
Confidence 11100 000 001111223678999999999999999999999999 5566777778899
Q ss_pred CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccccc
Q 004348 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (759)
Q Consensus 426 l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~ 505 (759)
++++|++++.++++|+.+ ++++|.+|++|+++++.+.... .++..+++.|++++||++.++|+++..+++........
T Consensus 636 ~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~-~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~ 713 (1296)
T PRK10252 636 LTADDVVLQKTPCSFDVS-VWEFFWPFIAGAKLVMAEPEAH-RDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR 713 (1296)
T ss_pred CCCCCEEEEeCCcchhhh-HHHHHHHHhCCCEEEECChhcc-CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc
Confidence 999999999999999998 6789999999999999865433 48999999999999999999999999988764321122
Q ss_pred CCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC-C----CCCCCCcCCCCCCceEEEE
Q 004348 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-W----PQKPGSATFPFFGVQPVIV 580 (759)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~-~----~~~~~~iG~p~~g~~~~Iv 580 (759)
..+++||.+++|||+++++++++|.+.++ ++++|.||+||++..++...... . .....++|+|++|++++|+
T Consensus 714 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~ 790 (1296)
T PRK10252 714 QSCASLRQVFCSGEALPADLCREWQQLTG---APLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRIL 790 (1296)
T ss_pred ccCCCccEEEEecCCCCHHHHHHHHhcCC---CEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEE
Confidence 34689999999999999999999998765 78999999999987655322111 1 2345689999999999999
Q ss_pred CCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc----CCcEEEeCCeee-------------------ccE
Q 004348 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPGYYFTGDGCS-------------------SGH 637 (759)
Q Consensus 581 D~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~----~~g~y~TGDl~~-------------------~G~ 637 (759)
|++++++|.|+.|||+|+| +++++||+++|+.+.+.|... ..+||+|||+|+ +|+
T Consensus 791 d~~~~~~~~g~~Gel~i~g--~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ 868 (1296)
T PRK10252 791 DARMRPVPPGVAGDLYLTG--IQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQ 868 (1296)
T ss_pred CCCCCCCCCCCceEEEecc--cccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeE
Confidence 9999999999999999999 899999999999888887542 345999999998 899
Q ss_pred eeCHHHHHHHHhcCCccceEEEEeEe----c--CCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEe
Q 004348 638 RIGTAEVESALVSHPQCAEAAVVGVE----H--EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWA 711 (759)
Q Consensus 638 rI~~~eIE~~L~~~p~V~ea~Vv~~~----~--~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v 711 (759)
||+|.|||++|.+||+|.+|+|+.+. + ....+.+++||+...+...+ .++|+++++++||.||+|..++.+
T Consensus 869 ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~ 945 (1296)
T PRK10252 869 RIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLD---TSALQAQLRERLPPHMVPVVLLQL 945 (1296)
T ss_pred EecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCC---HHHHHHHHHhhCchhcCCcEEEEe
Confidence 99999999999999999999887653 1 11224799999987664433 578999999999999999999999
Q ss_pred CCCCCCCCCcccHHHHHHH
Q 004348 712 PGLPKTRSGKIMRRILRKI 730 (759)
Q Consensus 712 ~~lP~T~~GKvdR~~L~~~ 730 (759)
++||+|+||||||++|++.
T Consensus 946 ~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 946 DQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred cCCCCCCCcChhHHhcCCC
Confidence 9999999999999999864
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-71 Score=640.61 Aligned_cols=517 Identities=41% Similarity=0.702 Sum_probs=431.7
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~i 271 (759)
+||.++.+|.++++++++++..+|+++|+++.+.. ..+++||+||.++++++|.+|.++|+++||+|+|+++|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~ 112 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHADGGRKDKVALRYLDAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELY 112 (570)
T ss_pred ccCCCCceeHHHHHHHHhhccCCCCceEEEEECCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHH
Confidence 79999999999999999886347999999986432 2578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCc
Q 004348 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (759)
Q Consensus 272 va~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~ 351 (759)
+++|||+++|++++|+++.++.+++.+++++++++++|+++....... ...+ +.++.++.++...
T Consensus 113 ~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~ 177 (570)
T PRK04319 113 FALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKP-----------ADDL----PSLKHVLLVGEDV 177 (570)
T ss_pred HHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccc-----------hhcC----CCceEEEEECCCc
Confidence 999999999999999999999999999999999999999866432100 0011 3344555443221
Q ss_pred cccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcE
Q 004348 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431 (759)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~ 431 (759)
. .......|.+.+...+...+.....++++++|+|||||||.||||+++|++++ .........+++.++|+
T Consensus 178 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~-~~~~~~~~~~~~~~~d~ 248 (570)
T PRK04319 178 E--------EGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAML-QHYQTGKYVLDLHEDDV 248 (570)
T ss_pred C--------CCcCccCHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHH-HHHHHHHHhcCCCCCce
Confidence 0 01122345554433333333344567899999999999999999999999954 44444556688999999
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCe
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (759)
+++..+++|..++.+.++.+|++|+++++.... +++..+++.|+++++|+++++|++++.|++.........++++|
T Consensus 249 ~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l 325 (570)
T PRK04319 249 YWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR---FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSL 325 (570)
T ss_pred EEecCChHHhhCchHHHHHHHhcCceEEEECCC---CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccc
Confidence 999999999999888899999999999997542 58999999999999999999999999998765433344578899
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCc
Q 004348 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC 591 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~ 591 (759)
|.+++||+++++++.+++.+.++ .++++.||+||++...+..... ....++++|+|++|++++|+|+++++++.|+
T Consensus 326 r~~~~gG~~l~~~~~~~~~~~~g---~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~ 401 (570)
T PRK04319 326 RHILSVGEPLNPEVVRWGMKVFG---LPIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVDDQGNELPPNR 401 (570)
T ss_pred eEEEEcccCCCHHHHHHHHHHhC---CCeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEECCCCCCCCCCC
Confidence 99999999999999999999887 7899999999998765443222 1345688999999999999999999999999
Q ss_pred eEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCC
Q 004348 592 SGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHP 652 (759)
Q Consensus 592 ~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p 652 (759)
.|||+|+|++|++++|||++++.+.+.|. +|||+|||+++ +|++|+|.|||++|.+||
T Consensus 402 ~Gel~i~~~~~~~~~GY~~~~~~~~~~~~---~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~ 478 (570)
T PRK04319 402 MGNLAIKKGWPSMMRGIWNNPEKYESYFA---GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHP 478 (570)
T ss_pred ceEEEEcCCCChHHhHhcCCHHHhhhhhc---CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCC
Confidence 99999998778999999999999887763 78999999988 799999999999999999
Q ss_pred ccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 653 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 653 ~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
.|.+++|++.+++..++.+++||++.++....+++.++|+++++++|+.|++|..|+++++||+|++||++|++|+++..
T Consensus 479 ~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 479 AVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred CeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 99999999999988899999999998776555666789999999999999999999999999999999999999999875
Q ss_pred cccCCCCCCCCCCC
Q 004348 733 RQLDELGDTSTLAD 746 (759)
Q Consensus 733 ~~~~~~~~~~~~~~ 746 (759)
+. ...+.+++.|
T Consensus 559 ~~--~~~~~~~~~~ 570 (570)
T PRK04319 559 GL--PEGDLSTMED 570 (570)
T ss_pred CC--CcCccccccC
Confidence 43 2234455543
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-72 Score=772.30 Aligned_cols=558 Identities=19% Similarity=0.252 Sum_probs=458.6
Q ss_pred CCCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccc-c
Q 004348 101 PSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-S 179 (759)
Q Consensus 101 ~~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~ 179 (759)
....++|||++.+.. ..+++.+.++|++++|+++++.+++++|.++|+.++++|+..++++.. +. ..+... .+ .
T Consensus 425 ~~~~~~~dL~l~v~~--~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~-~~-~~~~~~-~~~~ 499 (5163)
T PRK12316 425 KSRTTQFDLTLDTYE--KGGRLHAALTYATDLFEARTVERMARHWQNLLRGMVENPQARVDELPM-LD-AEERGQ-LVEG 499 (5163)
T ss_pred CCCccceeEEEEEEE--cCCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhccccccccCCC-CC-HHHHHH-HHHH
Confidence 456789999998764 457788899999999999999999999999999999999999988852 11 111111 11 0
Q ss_pred ccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004348 180 ENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259 (759)
Q Consensus 180 ~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 259 (759)
++.... .+ ....+++++|+++++ ++||++|+++. ++++||+||+++++++|+.|++.|+++|++
T Consensus 500 ~~~~~~------~~---~~~~~~~~~~~~~a~-~~p~~~A~~~~------~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~ 563 (5163)
T PRK12316 500 WNATAA------EY---PLQRGVHRLFEEQVE-RTPEAPALAFG------EETLDYAELNRRANRLAHALIERGVGPDVL 563 (5163)
T ss_pred hcCccc------cC---CCCCCHHHHHHHHHH-HCCCCeEEEeC------CceEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 110000 00 012368999999999 89999999986 678999999999999999999999999999
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCC
Q 004348 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339 (759)
Q Consensus 260 Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 339 (759)
|+|+++|++++++++|||+|+|++|+|+||.+|.+++.+++++++++++|++...... +.. .
T Consensus 564 V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~-------------~~~-----~ 625 (5163)
T PRK12316 564 VGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRK-------------LPL-----A 625 (5163)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhh-------------CCc-----c
Confidence 9999999999999999999999999999999999999999999999999997653210 000 0
Q ss_pred CccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHH
Q 004348 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419 (759)
Q Consensus 340 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~ 419 (759)
....++.++.... | ........+.....++++|||+|||||||+||||+++|++ +.+...+
T Consensus 626 ~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~-l~~~~~~ 686 (5163)
T PRK12316 626 AGVQVLDLDRPAA---------------W---LEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA-LSNRLCW 686 (5163)
T ss_pred cCceEEEecCcch---------------h---hccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHH-HHHHHHH
Confidence 0111232221110 0 0111111222345689999999999999999999999999 4566667
Q ss_pred HHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcC
Q 004348 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499 (759)
Q Consensus 420 ~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~ 499 (759)
....++++++|++++++|++|+.+ .+++|.+|++|+++++.+.... .++..+++.|++++||++.++|++++.|++..
T Consensus 687 ~~~~~~~~~~d~~l~~~p~~fd~~-~~~~~~~L~~G~~l~i~~~~~~-~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~ 764 (5163)
T PRK12316 687 MQQAYGLGVGDTVLQKTPFSFDVS-VWEFFWPLMSGARLVVAAPGDH-RDPAKLVELINREGVDTLHFVPSMLQAFLQDE 764 (5163)
T ss_pred HHHhcCCCCCCEEEeeCCeehHHH-HHHHHHHHhCCCEEEECCcccc-CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc
Confidence 778899999999999999999998 5789999999999999875433 48999999999999999999999999998753
Q ss_pred CcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEE
Q 004348 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVI 579 (759)
Q Consensus 500 ~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~I 579 (759)
. ..++++||.+++|||+++++++++|.+.++ +++++|.||+||++..++............++|+|++|++++|
T Consensus 765 ~----~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 838 (5163)
T PRK12316 765 D----VASCTSLRRIVCSGEALPADAQEQVFAKLP--QAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYI 838 (5163)
T ss_pred c----cccCCCccEEEEeeccCCHHHHHHHHHhCC--CCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEE
Confidence 2 236789999999999999999999988876 4899999999999865443222222335678999999999999
Q ss_pred ECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc----cCCcEEEeCCeee-------------------cc
Q 004348 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCS-------------------SG 636 (759)
Q Consensus 580 vD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~----~~~g~y~TGDl~~-------------------~G 636 (759)
+|++++++|.|+.|||+|+| |++++||+|+|+.+.+.|.. +.++||+|||+|+ +|
T Consensus 839 ~d~~~~~~p~G~~GEl~i~G--~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G 916 (5163)
T PRK12316 839 LDANLEPVPVGVLGELYLAG--RGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRG 916 (5163)
T ss_pred ECCCCCCCCCCCceEEEecc--cccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEce
Confidence 99999999999999999999 99999999999999888854 2356999999998 89
Q ss_pred EeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCC
Q 004348 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716 (759)
Q Consensus 637 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~ 716 (759)
+||+|.|||++|.+||+|.+|+|++.+ ++.++|||++.++.... .++|+++++++||+||+|+.|+++++||+
T Consensus 917 ~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~---~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~ 989 (5163)
T PRK12316 917 LRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDW---REALKAHLAASLPEYMVPAQWLALERLPL 989 (5163)
T ss_pred EEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCC---HHHHHHHHHhhCCCccCCCeEEEHhhCCC
Confidence 999999999999999999999999875 67899999987654333 57899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHhc
Q 004348 717 TRSGKIMRRILRKIASR 733 (759)
Q Consensus 717 T~~GKvdR~~L~~~~~~ 733 (759)
|+||||||++|++....
T Consensus 990 t~~GKidr~~L~~~~~~ 1006 (5163)
T PRK12316 990 TPNGKLDRKALPAPEAS 1006 (5163)
T ss_pred CCCCChhHHhhcCcccc
Confidence 99999999999876543
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-72 Score=768.91 Aligned_cols=549 Identities=19% Similarity=0.245 Sum_probs=452.9
Q ss_pred CCCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccc-c
Q 004348 101 PSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-S 179 (759)
Q Consensus 101 ~~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~ 179 (759)
....++|||.+.+.. ..+++...++|++++|+++++++++++|..+|++++++|+..++++.. +. ..+... ++ .
T Consensus 2971 ~~~~~~~dL~l~v~~--~~~~l~~~~~y~~~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~l~~-~~-~~~~~~-~~~~ 3045 (5163)
T PRK12316 2971 DGAATQFDLALDTWE--SAEGLGASLTYATDLFDARTVERLARHWQNLLRGMVENPQRSVDELAM-LD-AEERGQ-LLEA 3045 (5163)
T ss_pred cCCccceeeEEEEEe--cCCcEEEEEEECcCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccC-CC-HHHHHH-HHHH
Confidence 345688999888764 346688899999999999999999999999999999999999998842 11 111111 11 0
Q ss_pred ccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004348 180 ENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259 (759)
Q Consensus 180 ~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 259 (759)
++.... .+ ....+++++|+++++ ++|+++|+++. ++.+||+||+++++++|++|++.|+++|++
T Consensus 3046 ~~~~~~------~~---~~~~~~~~~~~~~~~-~~p~~~Av~~~------~~~lTY~eL~~~~~~lA~~L~~~gv~~~~~ 3109 (5163)
T PRK12316 3046 WNATAA------EY---PLERGVHRLFEEQVE-RTPDAVALAFG------EQRLSYAELNRRANRLAHRLIERGVGPDVL 3109 (5163)
T ss_pred hCCCCc------CC---CCcCCHHHHHHHHHH-hCCCCeeEeeC------CeEEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 111100 00 111368999999999 89999999987 688999999999999999999999999999
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCC
Q 004348 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339 (759)
Q Consensus 260 Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 339 (759)
|+|+++|++++++++|||+|+|++||||||.+|.+|+.+++++++++++|+++... +.. .
T Consensus 3110 V~l~~~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~---------------~~~-----~ 3169 (5163)
T PRK12316 3110 VGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR---------------LPL-----A 3169 (5163)
T ss_pred EEEEccCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCcccc---------------CCc-----c
Confidence 99999999999999999999999999999999999999999999999999876430 000 0
Q ss_pred CccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHH
Q 004348 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419 (759)
Q Consensus 340 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~ 419 (759)
....++.++... .......+.....++++|||+|||||||+||||+++|++ +.+...+
T Consensus 3170 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~-l~~~~~~ 3227 (5163)
T PRK12316 3170 QGVQVLDLDRGD---------------------ENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSA-LSNHLCW 3227 (5163)
T ss_pred CCccEEEecccc---------------------ccccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHH-HHHHHHH
Confidence 111223222210 000111222345689999999999999999999999999 5566677
Q ss_pred HHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcC
Q 004348 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499 (759)
Q Consensus 420 ~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~ 499 (759)
....++++++|+++++++++|+.+ ++++|.+|++|+++++.+.... .++..+.+.++++++|++.++|+++..+++..
T Consensus 3228 ~~~~~~~~~~d~~l~~~~~~fd~~-~~~i~~~L~~G~~l~~~~~~~~-~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~ 3305 (5163)
T PRK12316 3228 MQQAYGLGVGDRVLQFTTFSFDVF-VEELFWPLMSGARVVLAGPEDW-RDPALLVELINSEGVDVLHAYPSMLQAFLEEE 3305 (5163)
T ss_pred HHHhhCCCcccEEEeecCccHHHH-HHHHHHHHhCCCEEEEcChhhc-CCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc
Confidence 777899999999999999999987 6899999999999999865433 48899999999999999999999999988653
Q ss_pred CcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEE
Q 004348 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVI 579 (759)
Q Consensus 500 ~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~I 579 (759)
. ...+++||.+++|||++++++.++|. .+ ++++|.||+||+++.++............++|+|++|++++|
T Consensus 3306 ~----~~~~~~lr~~~~gGe~l~~~~~~~~~--~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 3376 (5163)
T PRK12316 3306 D----AHRCTSLKRIVCGGEALPADLQQQVF--AG---LPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYI 3376 (5163)
T ss_pred c----cccCCcceEEEEccccCCHHHHHHHH--hC---CcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEE
Confidence 2 23568999999999999999999998 33 789999999999987664332222234678999999999999
Q ss_pred ECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc----CCcEEEeCCeee-------------------cc
Q 004348 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPGYYFTGDGCS-------------------SG 636 (759)
Q Consensus 580 vD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~----~~g~y~TGDl~~-------------------~G 636 (759)
+|++++++|.|+.|||+|+| +++++||+|+|++|.+.|..+ ..+||+|||+|+ +|
T Consensus 3377 ~d~~~~~~p~G~~GEl~i~G--~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G 3454 (5163)
T PRK12316 3377 LDGSLEPVPVGALGELYLGG--EGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRG 3454 (5163)
T ss_pred ECCCCCCCCCCCCceEEecc--cccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCc
Confidence 99999999999999999999 999999999999999888642 346999999998 89
Q ss_pred EeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCC
Q 004348 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716 (759)
Q Consensus 637 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~ 716 (759)
+||+|+|||++|.+||+|.+|+|++.. ++.++|||++...... ..++|+++|+++||.||+|..|+++++||+
T Consensus 3455 ~rIel~eIE~~l~~~~~V~~a~v~~~~----~~~l~a~vv~~~~~~~---~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~ 3527 (5163)
T PRK12316 3455 FRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVPEDEAGD---LREALKAHLKASLPEYMVPAHLLFLERMPL 3527 (5163)
T ss_pred EeeChHHHHHHHHhCCCcceEEEEEcc----CCeEEEEEEcCCcCcc---cHHHHHHHHHhhCCcccCcceeeeHhhcCC
Confidence 999999999999999999999998764 5689999998654332 257899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHh
Q 004348 717 TRSGKIMRRILRKIAS 732 (759)
Q Consensus 717 T~~GKvdR~~L~~~~~ 732 (759)
|+||||||++|++...
T Consensus 3528 t~~GKvdr~~L~~~~~ 3543 (5163)
T PRK12316 3528 TPNGKLDRKALPRPDA 3543 (5163)
T ss_pred CCCcchhHHhcCCCcc
Confidence 9999999999987543
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-71 Score=571.45 Aligned_cols=504 Identities=23% Similarity=0.292 Sum_probs=428.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++++-.++ .-||+.|+++..+ +.++||+|+.+.+..+|..|.++|+++||||+|..||+.+|+..+|||.++
T Consensus 51 Tigq~l~~~t~-~v~dkea~Vf~~e----g~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~A 125 (596)
T KOG1177|consen 51 TIGQLLETTTE-RVPDKEAAVFDHE----GIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARA 125 (596)
T ss_pred cHHHHHHHHhh-ccCcceEEEEeec----cchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHh
Confidence 78889988888 8999999998843 677999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhh---------cCCCccEEEEeccCc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK---------SGISVDVCLTYENQS 351 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~vi~~~~~~ 351 (759)
|.+.++++|.|+.+++++.|+..+++++|+...+ +..++.+.+.++..+... .-+.+.++|..++..
T Consensus 126 G~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~----k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~ 201 (596)
T KOG1177|consen 126 GLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQF----KTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH 201 (596)
T ss_pred ceEEeccCcccccHHHHHHHhhcCeEEEEccchh----hhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC
Confidence 9999999999999999999999999999987654 333444555555544321 114556666655322
Q ss_pred cccccccccCCCCccchhhhcCCCCCCC------CccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC
Q 004348 352 AMTRENTKWQDGRDIWWQDVVPKYPTKC------EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (759)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (759)
. ......++|.+.....+. -.....|+|++.|.|||||||.|||+.+||-|++.+ .......++
T Consensus 202 ~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nn-a~~vg~r~g 271 (596)
T KOG1177|consen 202 P---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNN-ARAVGARAG 271 (596)
T ss_pred c---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhh-HHHHHHHhC
Confidence 1 112333455544332211 123567899999999999999999999999996655 444556789
Q ss_pred CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccccc
Q 004348 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (759)
Q Consensus 426 l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~ 505 (759)
++..+++++..|+.|.+|....++.+|+.|+|+|++... +++...++.|.++|+|.++.+|+++..|++.+. ..+
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~---f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~--~~~ 346 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPS---FDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQ--KQQ 346 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCC---CChHHHHHHHHhhceEEEecChHHHHHHhcchh--hcc
Confidence 999889999999999999889999999999999998654 699999999999999999999999999998765 567
Q ss_pred CCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCC-CCCCCCcCCCCCCceEEEECCCC
Q 004348 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW-PQKPGSATFPFFGVQPVIVDEKG 584 (759)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~-~~~~~~iG~p~~g~~~~IvD~~g 584 (759)
.+++++|.++.||.++|+++++.+.+.... ..+...||+|||+...+....++. .....++|+.+++.+..|+|++|
T Consensus 347 ~~~s~lr~~vigGa~~s~eLlk~iv~~~~m--~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g 424 (596)
T KOG1177|consen 347 VDLSSLRKGVIGGAPVSPELLKLIVNQMNM--KDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDG 424 (596)
T ss_pred CchhhhhhheeCCCCCCHHHHHHHHHhhCc--eeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCC
Confidence 899999999999999999999999987652 457889999999987776655542 23456899999999999999999
Q ss_pred cccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHH
Q 004348 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVE 645 (759)
Q Consensus 585 ~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE 645 (759)
..+|-|+.|||+|+| ++.|.|||++++++.+..- .+.||+|||.++ +|.+|+|.|||
T Consensus 425 ~~v~~~~~Gel~iRG--Y~tMl~Ywg~~~kT~eti~--~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE 500 (596)
T KOG1177|consen 425 SEVPLGTKGELLIRG--YSTMLGYWGEEEKTKETIG--NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELE 500 (596)
T ss_pred CccccCCCceEEEEe--chhheeecCCcccchhhcc--cccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHH
Confidence 999999999999999 8999999999998888754 378999999988 89999999999
Q ss_pred HHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHH
Q 004348 646 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 725 (759)
Q Consensus 646 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~ 725 (759)
+.|.+||.|.++.||+++|+..|+.++|+|.+.++...- ...++|+.+++.+|..|++|++|+++++||+|-+|||.|-
T Consensus 501 ~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~-~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKF 579 (596)
T KOG1177|consen 501 DFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK-TTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKF 579 (596)
T ss_pred HHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc-ccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhH
Confidence 999999999999999999999999999999998876531 2378999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 004348 726 ILRKIASRQL 735 (759)
Q Consensus 726 ~L~~~~~~~~ 735 (759)
+++++..+++
T Consensus 580 eir~~~k~~l 589 (596)
T KOG1177|consen 580 EIREMSKGHL 589 (596)
T ss_pred HHHHHHHhhc
Confidence 9999988653
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=751.03 Aligned_cols=556 Identities=20% Similarity=0.268 Sum_probs=454.9
Q ss_pred CCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhccccccccccccccccc
Q 004348 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSEN 181 (759)
Q Consensus 102 ~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (759)
....+|||.+.+.... ++.+...++|++++|+.+++++++++|..+|++++++|++.++++.. +. ..+... +..++
T Consensus 1047 ~~~~~~~l~l~~~~~~-~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~~~~~p~~~~~~l~l-~~-~~~~~~-l~~~~ 1122 (4334)
T PRK05691 1047 SREAKFDLQLHSEEDR-NGRLTLSFDYAAELFDAATIERLAEHFLALLEQVCEDPQRALGDVQL-LD-AAERAQ-LAQWG 1122 (4334)
T ss_pred CCcccceEEEEEEECC-CCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcccchhhhcC-CC-HHHHHH-HHhcc
Confidence 4457899988755322 34578899999999999999999999999999999999999999852 11 111111 11111
Q ss_pred ccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004348 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (759)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 261 (759)
.... .....+++++|+++++ .+||++|+++. ++.+||+||+++++++|++|++.|+++|++|+
T Consensus 1123 ~~~~----------~~~~~~l~~~~~~~a~-~~p~~~Al~~~------~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~ 1185 (4334)
T PRK05691 1123 QAPC----------APAQAWLPELLNEQAR-QTPERIALVWD------GGSLDYAELHAQANRLAHYLRDKGVGPDVCVA 1185 (4334)
T ss_pred CCCC----------CCccCCHHHHHHHHHH-hCCCCeEEEEC------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 1100 0112368999999999 89999999986 57899999999999999999999999999999
Q ss_pred EEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004348 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (759)
Q Consensus 262 i~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 341 (759)
|++++++++++++|||+|+|++|+|+||.+|.+|+.+++++++++++|++...... +... ...
T Consensus 1186 i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~-------------~~~~----~~~ 1248 (4334)
T PRK05691 1186 IAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLER-------------LPQA----EGV 1248 (4334)
T ss_pred EEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhh-------------cccc----cCc
Confidence 99999999999999999999999999999999999999999999999997653210 0000 001
Q ss_pred cEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH
Q 004348 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (759)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (759)
.++.++... . .......+.....++++|||+|||||||+||||+++|++ +.+...+..
T Consensus 1249 -~~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~-l~~~~~~~~ 1306 (4334)
T PRK05691 1249 -SAIALDSLH----------------L----DSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAA-LAERLQWMQ 1306 (4334)
T ss_pred -eEEeecccc----------------c----cccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHH-HHHHHHHHH
Confidence 111111110 0 000111122234678999999999999999999999999 555666777
Q ss_pred HHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc
Q 004348 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (759)
Q Consensus 422 ~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~ 501 (759)
..+++.++|+++++++++|+.+ .+++|.+|++|+++++.+.... .++..+++.|++++||++.++|++++.|.+...
T Consensus 1307 ~~~~~~~~d~~l~~~~~~fd~s-~~~~~~~L~~G~~l~i~~~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~- 1383 (4334)
T PRK05691 1307 ATYALDDSDVLMQKAPISFDVS-VWECFWPLITGCRLVLAGPGEH-RDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL- 1383 (4334)
T ss_pred HhcCCCCCCEEEEeCCccHHHH-HHHHHHHHhCCCEEEEcCcccc-CCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-
Confidence 7899999999999999999998 5799999999999999865433 489999999999999999999999999986532
Q ss_pred ccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC
Q 004348 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581 (759)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD 581 (759)
..++++||.+++|||++++++.++|.+.++ +++++|.||+||+++.++............++|+|++|+.++|+|
T Consensus 1384 ---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d 1458 (4334)
T PRK05691 1384 ---AAACTSLRRLFSGGEALPAELRNRVLQRLP--QVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD 1458 (4334)
T ss_pred ---cccCCcccEEEEeecCCCHHHHHHHHHhCC--CcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC
Confidence 236789999999999999999999999886 589999999999987665422212223457899999999999999
Q ss_pred CCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc-----CCcEEEeCCeee-------------------ccE
Q 004348 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCS-------------------SGH 637 (759)
Q Consensus 582 ~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~-----~~g~y~TGDl~~-------------------~G~ 637 (759)
++++++|.|+.|||+|+| +++++||+|+|+.+.+.|... ..+||+|||+|+ +|+
T Consensus 1459 ~~~~~vp~G~~GEL~i~G--~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~ 1536 (4334)
T PRK05691 1459 AELNLLPPGVAGELCIGG--AGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGF 1536 (4334)
T ss_pred CCCCCCCCCCceEEEecC--cccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCE
Confidence 999999999999999999 999999999999999888642 235999999998 899
Q ss_pred eeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCC
Q 004348 638 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717 (759)
Q Consensus 638 rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T 717 (759)
||+|+|||++|.+||+|.+|+|++..+. .++.+++|++...+.... .++|+++|+++||.||+|..|+++++||+|
T Consensus 1537 rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~---~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t 1612 (4334)
T PRK05691 1537 RVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAE---AERLKAALAAELPEYMVPAQLIRLDQMPLG 1612 (4334)
T ss_pred EcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCC---HHHHHHHHHHhCccccCCcEEEEccccCCC
Confidence 9999999999999999999999976654 457899999987654433 468999999999999999999999999999
Q ss_pred CCCcccHHHHHHHH
Q 004348 718 RSGKIMRRILRKIA 731 (759)
Q Consensus 718 ~~GKvdR~~L~~~~ 731 (759)
+||||||++|++..
T Consensus 1613 ~~GKidr~~L~~~~ 1626 (4334)
T PRK05691 1613 PSGKLDRRALPEPV 1626 (4334)
T ss_pred CCCCcChhhcCccc
Confidence 99999999998654
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=607.95 Aligned_cols=491 Identities=31% Similarity=0.403 Sum_probs=401.7
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.+.+++++. .+|+++|+++.+.. .++||+||.++++++|+.|++.||++||+|+|+++|++++++++|||+++
T Consensus 12 ~~~~~l~~~a~-~~~~~~a~~~~~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~ 86 (534)
T COG0318 12 TLASLLERAAR-RNPDRPALIFLGRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA 86 (534)
T ss_pred cHHHHHHHHHH-hCCCceEEEEcCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 57888999988 89999999998421 25999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++.+||+|.+..+++.+++++++++++++++... +.+....... +....++......
T Consensus 87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 144 (534)
T COG0318 87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA---------ALLEAVAEAL----PVVLVVLLVGDAD--------- 144 (534)
T ss_pred CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccch---------hHHHHHhccC----CcceEEEeccccc---------
Confidence 99999999999999999999999999999987631 2222211111 1111111111110
Q ss_pred CCCCc-cchhhhcCCCCCC-CCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC--CCCCcEEEEec
Q 004348 361 QDGRD-IWWQDVVPKYPTK-CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD--YKPSDVYWCTA 436 (759)
Q Consensus 361 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~--l~~~d~~l~~~ 436 (759)
... ..+.+.....+.. ......+++|+|+|+|||||||.||||++||++++.+ .......++ +++.|++++.+
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~-~~~~~~~~~~~~~~~d~~l~~l 221 (534)
T COG0318 145 --DRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLAN-AAGIAAALGGGLTPDDVVLSWL 221 (534)
T ss_pred --ccccccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHH-HHHHHHHhcccCCCCceEEEec
Confidence 000 1233332222111 1112267899999999999999999999999996655 444555667 89999999999
Q ss_pred CcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCC-eeEEE
Q 004348 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS-LRVLG 515 (759)
Q Consensus 437 ~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~s-Lr~v~ 515 (759)
|++|++|+...++.+++.|+++++..+. .+++..++..+.++++|++..+|+++..|+...... ..++.+ ||.++
T Consensus 222 Pl~H~~Gl~~~~~~~~~~G~~~v~~~~~--~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~--~~~~~~~lr~~~ 297 (534)
T COG0318 222 PLFHIFGLIVGLLAPLLGGGTLVLLSPE--PFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKD--DDDLSSSLRLVL 297 (534)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEeCCCC--CcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccC--ccccccceEEEE
Confidence 9999999887778789999999997632 258999999999999999999999999998886532 223444 99999
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCc-ccCCCceEE
Q 004348 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGV-EIEGECSGY 594 (759)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~-~vp~g~~GE 594 (759)
+||++++++++++|.+.++. ..++..||+||++..++.........+.+++|+|++|++++|+|+++. ++| |..||
T Consensus 298 ~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGe 374 (534)
T COG0318 298 SGGAPLPPELLERFEERFGP--IAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGE 374 (534)
T ss_pred ecCCcCCHHHHHHHHHHhCC--CceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceE
Confidence 99999999999999999983 579999999999976654433220135677899999999999997665 666 88999
Q ss_pred EEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccc
Q 004348 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCA 655 (759)
Q Consensus 595 L~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ 655 (759)
|+|+| |+++.|||++|+.+.+.|-. +|||+|||+|+ +|++|+|.|||.+|.+||.|.
T Consensus 375 i~irg--p~v~~GY~~~pe~t~~~f~~--~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~ 450 (534)
T COG0318 375 IWVRG--PNVMKGYWNRPEATAEAFDE--DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVA 450 (534)
T ss_pred EEEEC--chhhhhhcCChHHHHHhhcc--CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcc
Confidence 99999 99999999999999985532 59999999986 899999999999999999999
Q ss_pred eEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 656 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 656 ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+|+|++++|+..|+.++|+|+++++.. .....++|+++|+++++.|++|+.++++++||+|++||++|+.|++.+..
T Consensus 451 ~aavvgvpd~~~Ge~~~a~v~~~~~~~-~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 451 EAAVVGVPDERWGERVVAVVVLKPGGD-AELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred eEEEEeCCCCccCceEEEEEEEcCCCC-CCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999987632 01126899999999999999999999999999999999999999998875
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-68 Score=615.21 Aligned_cols=480 Identities=23% Similarity=0.297 Sum_probs=396.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++. .+++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 50 ~~~~~~~~~a~-~~pd~~Al~~~------~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 122 (549)
T PRK07788 50 PFAGLVAHAAR-RAPDRAALIDE------RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKV 122 (549)
T ss_pred hHHHHHHHHHH-HCCCceEEEEC------CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 68899999998 89999999976 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++|+++... ..+....... ..+..++...... ..
T Consensus 123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~-------~~ 182 (549)
T PRK07788 123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEFT---------DLLSALPPDL----GRLRAWGGNPDDD-------EP 182 (549)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhH---------HHHHhhcccc----ccceEEEEecCcc-------cc
Confidence 99999999999999999999999999999986532 2221111111 1222222111110 00
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
.......|++........ .....+++.++|+|||||||+||||+++|++++ .........+++.++|+++...|++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~-~~~~~~~~~~~~~~~d~~~~~~p~~~ 259 (549)
T PRK07788 183 SGSTDETLDDLIAGSSTA--PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPL-APLAGLLSRVPFRAGETTLLPAPMFH 259 (549)
T ss_pred CCcCcccHHHHhcCCCCC--CCCCCCCCCcEEEECCCCCCCCCEEeccCccHH-HHHHHHHhhCCCCcCCeEEEccchHH
Confidence 011223455554432221 112346788999999999999999999999954 44445556678899999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..++ ..++.++..|+++++... +++..+++.++++++|++.++|++++.|++.........++++||.+++|||+
T Consensus 260 ~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~ 334 (549)
T PRK07788 260 ATGW-AHLTLAMALGSTVVLRRR----FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSA 334 (549)
T ss_pred HHHH-HHHHHHHHhCCEEEECCC----CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCC
Confidence 9885 457788999999988742 48999999999999999999999999998875432244568899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
++++++++|.+.++ .+++|.||+||++...+... ......++++|+|++|++++|+|+++++++.|+.|||+|+|
T Consensus 335 l~~~~~~~~~~~~~---~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g- 409 (549)
T PRK07788 335 LSPELATRALEAFG---PVLYNLYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGN- 409 (549)
T ss_pred CCHHHHHHHHHHhC---ccceeccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeC-
Confidence 99999999999987 67999999999986544322 11224567899999999999999999999999999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
+.++.||+++++. . ..+|||+|||+++ +|+||+|.|||++|.+||+|.+|+|++
T Consensus 410 -~~~~~gY~~~~~~---~---~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~ 482 (549)
T PRK07788 410 -GFPFEGYTDGRDK---Q---IIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIG 482 (549)
T ss_pred -CCccccccCCCcc---c---ccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEEC
Confidence 8899999998865 1 1378999999987 899999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHH
Q 004348 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~ 730 (759)
++++..++.++|||+++++...+ .++|+++++++||.|++|..|+++++||+|++||++|++|+++
T Consensus 483 ~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 483 VDDEEFGQRLRAFVVKAPGAALD---EDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred CcCcccccEEEEEEEeCCCCCCC---HHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99988889999999998765444 5789999999999999999999999999999999999999863
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=625.58 Aligned_cols=464 Identities=21% Similarity=0.311 Sum_probs=385.9
Q ss_pred HHHHHhhccccc--CCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 202 CYNCLDRNIEAG--LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 202 ~~~~l~~~~~~~--~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
+.++|.+++. . +||++|++.. +.+||+||+++++++|++|.++|+++||+|+|+++|++++++++|||++
T Consensus 6 ~~~~~~~~a~-~~~~pd~~a~~~~-------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 77 (705)
T PRK06060 6 LAGLLAEQAS-EAGWYDRPAFYAA-------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLA 77 (705)
T ss_pred HHHHHHHHHh-hccCCCceEEEec-------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 5677888776 4 7999999853 3799999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++.+++.+++++++++++|+++........ ..++.....
T Consensus 78 aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~---------------------~~~~~~~~~--------- 127 (705)
T PRK06060 78 RGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQP---------------------SRVAEAAEL--------- 127 (705)
T ss_pred hCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc---------------------cccchhhhh---------
Confidence 99999999999999999999999999999997643210000 000000000
Q ss_pred cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
+.+.....+ .......+++++||+|||||||+||||+++|++++.+........+++.++|++++.+++.
T Consensus 128 --------~~~~~~~~~--~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 197 (705)
T PRK06060 128 --------MSEAARVAP--GGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMY 197 (705)
T ss_pred --------hhhccccCC--CCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccch
Confidence 000000000 0112345789999999999999999999999996544333334467889999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++...++.+|..|+++++.+.. .++..++.+++++++|+++++|+++..|++... ..++++||.+++|||
T Consensus 198 ~~~~~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----~~~~~slr~i~~gGe 270 (705)
T PRK06060 198 FAYGLGNSVWFPLATGGSAVINSAP---VTPEAAAILSARFGPSVLYGVPNFFARVIDSCS----PDSFRSLRCVVSAGE 270 (705)
T ss_pred hhcchhHHHHHHHhcCCEEEEeCCC---CCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc----cccccceeEEEEecC
Confidence 9988767788999999999997532 478889999999999999999999999887542 235789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
+++++++++|.+.++ +++++|.||+||++.+....... ..+.+++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 271 ~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g 346 (705)
T PRK06060 271 ALELGLAERLMEFFG--GIPILDGIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRG 346 (705)
T ss_pred cCCHHHHHHHHHHcC--CCceEeeeeccccCceEEeccCC--CCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEcc
Confidence 999999999999987 47899999999998654432211 23567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVV 660 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv 660 (759)
+++++||||+++.+. ..+|||+|||+|+ +|+||+|.|||++|.+||.|.+|+|+
T Consensus 347 --~~v~~GY~~~~~~~~-----~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv 419 (705)
T PRK06060 347 --PAIAKGYWNRPDSPV-----ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVV 419 (705)
T ss_pred --chhhhhhhCCCcccc-----cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 899999999998642 2478999999988 89999999999999999999999999
Q ss_pred eEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHH
Q 004348 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~ 731 (759)
++++...++.+++||++.++...+.+..++|+++|+++||.||+|..|+++++||+|+|||+||++|++.+
T Consensus 420 ~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 420 AVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred eecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 99988888899999998766544444467899999999999999999999999999999999999999865
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=610.91 Aligned_cols=506 Identities=24% Similarity=0.312 Sum_probs=406.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCC--CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
+++++|+++++ .+||++|+++.... .+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 26 t~~~~l~~~a~-~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~ 104 (632)
T PRK07529 26 STYELLSRAAA-RHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE 104 (632)
T ss_pred CHHHHHHHHHH-HCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 57899999998 89999999974221 1236789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc-c
Q 004348 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE-N 357 (759)
Q Consensus 279 kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~ 357 (759)
++| +++|++|.++.+++.+++++++++++|+++.... ..+.+.+....... +.++.++.++........ .
T Consensus 105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~ 175 (632)
T PRK07529 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPG----TDIWQKVAEVLAAL----PELRTVVEVDLARYLPGPKR 175 (632)
T ss_pred HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCC----chHHHHHHHHHhcC----CcceeEEEecCccccccccc
Confidence 999 5799999999999999999999999999876421 11222232333322 455666655432100000 0
Q ss_pred --ccc----CCCCccchhhhcCCCCCC--CCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCC
Q 004348 358 --TKW----QDGRDIWWQDVVPKYPTK--CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPS 429 (759)
Q Consensus 358 --~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~ 429 (759)
... .......|.+.+...+.. .......++++++|+|||||||.||||+++|++++ .........+++.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~-~~~~~~~~~~~~~~~ 254 (632)
T PRK07529 176 LAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEV-ANAWLGALLLGLGPG 254 (632)
T ss_pred ccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHH-HHHHHHHHhcCCCCC
Confidence 000 111233455544433221 11223467999999999999999999999999954 445555566788999
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCC---hhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccC
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD---SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d---~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~ 506 (759)
|++++..|++|..++...++.+|..|+++++.+.... .+ ...++++|+++++|++.++|+++..|++... ...
T Consensus 255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~ 330 (632)
T PRK07529 255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGY-RGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV---DGH 330 (632)
T ss_pred CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCcccc-CcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---cCC
Confidence 9999999999998877788999999999999754211 12 3679999999999999999999999988653 234
Q ss_pred CCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEE--ECCCC
Q 004348 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVI--VDEKG 584 (759)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~I--vD~~g 584 (759)
++++||.+++||+++++++.++|.+.++ ++++|.||+||++.++...... ...+.+++|+|++++.++| +|+++
T Consensus 331 ~~~slr~v~~gg~~l~~~l~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d~~g 406 (632)
T PRK07529 331 DISSLRYALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILDDAG 406 (632)
T ss_pred CccceEEEEEcCCCCCHHHHHHHHHHhC---CcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcCCCC
Confidence 7899999999999999999999999887 7899999999998765443222 2346789999999999888 47777
Q ss_pred ---cccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHH
Q 004348 585 ---VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTA 642 (759)
Q Consensus 585 ---~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~ 642 (759)
++++.|+.|||+|+| |+++.||++++ .+...|+ .+|||+|||+|+ +|+||+|.
T Consensus 407 ~~~~~~~~g~~Gel~v~g--p~v~~GY~~~~-~~~~~~~--~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~ 481 (632)
T PRK07529 407 RYLRDCAVDEVGVLCIAG--PNVFSGYLEAA-HNKGLWL--EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPA 481 (632)
T ss_pred cccccCCCCCceEEEEEC--CCccccccCCc-ccccccc--CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHH
Confidence 889999999999999 89999999865 3444454 378999999998 89999999
Q ss_pred HHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcC-CCccccEEEEeCCCCCCCCCc
Q 004348 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG-AFAAPDKIHWAPGLPKTRSGK 721 (759)
Q Consensus 643 eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp-~~~vP~~iv~v~~lP~T~~GK 721 (759)
|||++|.+||+|.+|+|++++++..++.++|||+++++...+ .++|+++++++|+ .+++|+.|+++++||+|++||
T Consensus 482 eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~---~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GK 558 (632)
T PRK07529 482 AIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASAT---EAELLAFARDHIAERAAVPKHVRILDALPKTAVGK 558 (632)
T ss_pred HHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCC---HHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCc
Confidence 999999999999999999999988899999999998776544 5689999999997 579999999999999999999
Q ss_pred ccHHHHHHHHhc
Q 004348 722 IMRRILRKIASR 733 (759)
Q Consensus 722 vdR~~L~~~~~~ 733 (759)
|+|++|++.+..
T Consensus 559 i~r~~Lr~~~~~ 570 (632)
T PRK07529 559 IFKPALRRDAIR 570 (632)
T ss_pred ccHHHHHHHHHH
Confidence 999999987654
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=600.06 Aligned_cols=492 Identities=24% Similarity=0.329 Sum_probs=404.8
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+|+++|+++.+...+..+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 25 ~l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~ 103 (547)
T PRK13295 25 TINDDLDACVA-SCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRI 103 (547)
T ss_pred CHHHHHHHHHH-HCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 57889999988 89999999986432233489999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++.... ....+.+.+....+ +.+..++.++....
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 167 (547)
T PRK13295 104 GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRG----FDHAAMARRLRPEL----PALRHVVVVGGDGA-------- 167 (547)
T ss_pred CcEEeccccccCHHHHHHHHHhcCceEEEEeccccC----cchHHHHHHHhhhC----CCcceEEEecCCCc--------
Confidence 999999999999999999999999999999876421 11112222222222 34455554432210
Q ss_pred CCCCccchhhhcCC--------CCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEE
Q 004348 361 QDGRDIWWQDVVPK--------YPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (759)
Q Consensus 361 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~ 432 (759)
..|.+.... .+.........++++++|+|||||||.||||+++|++++.+ .......+++.++|++
T Consensus 168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~ 241 (547)
T PRK13295 168 -----DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMAN-IVPYAERLGLGADDVI 241 (547)
T ss_pred -----cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHH-HHHHHHHhCCCCCCeE
Confidence 112111110 00111122346789999999999999999999999996544 4445566889999999
Q ss_pred EEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCee
Q 004348 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (759)
Q Consensus 433 l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr 512 (759)
++..|++|..++.+.++.+|..|+++++.+. .++..+++.++++++|++.++|+++..|..... ....++++||
T Consensus 242 l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~--~~~~~~~~l~ 315 (547)
T PRK13295 242 LMASPMAHQTGFMYGLMMPVMLGATAVLQDI----WDPARAAELIRTEGVTFTMASTPFLTDLTRAVK--ESGRPVSSLR 315 (547)
T ss_pred EEecCchhhhhHHHHHHHHHHcCCeEEeCCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--ccCCCcccce
Confidence 9999999999888889999999999998753 489999999999999999999999999887643 2234678999
Q ss_pred EEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCce
Q 004348 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592 (759)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~ 592 (759)
.+++||+++++++++++.+.++ ++++|.||+||++.+.+............++|+|+++++++|+|+++++++.|+.
T Consensus 316 ~~~~~G~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~ 392 (547)
T PRK13295 316 TFLCAGAPIPGALVERARAALG---AKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI 392 (547)
T ss_pred EEEEecCCCCHHHHHHHHHHhC---CCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC
Confidence 9999999999999999999886 7899999999998755433221112234678999999999999999999999999
Q ss_pred EEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 593 GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
|||+|+| ++++.||+++++.+... .+|||+|||+|+ +|+||+|.|||++|.+|+.
T Consensus 393 Gel~v~g--~~~~~gY~~~~~~t~~~----~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~ 466 (547)
T PRK13295 393 GRLQVRG--CSNFGGYLKRPQLNGTD----ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA 466 (547)
T ss_pred CeEEEEc--CcccccccCCccccccC----CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCC
Confidence 9999999 89999999999887654 478999999988 8999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
|.+++|++++++..++.++++|++.++...+ .+++++++++ +|++||+|..|+++++||+|.+||++|++|++++.
T Consensus 467 v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~ 543 (547)
T PRK13295 467 IAQVAIVAYPDERLGERACAFVVPRPGQSLD---FEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLR 543 (547)
T ss_pred eeeEEEEeeecCCCCcEEEEEEEeCCCCCCC---HHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHh
Confidence 9999999999988889999999988764433 4678888986 79999999999999999999999999999999886
Q ss_pred c
Q 004348 733 R 733 (759)
Q Consensus 733 ~ 733 (759)
+
T Consensus 544 ~ 544 (547)
T PRK13295 544 G 544 (547)
T ss_pred c
Confidence 4
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=603.29 Aligned_cols=496 Identities=20% Similarity=0.188 Sum_probs=391.5
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 8 ~~~~~~~~~~~-~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~ 80 (563)
T PLN02860 8 HICQCLTRLAT-LRGNAVVTISG------NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACA 80 (563)
T ss_pred HHHHHHHHHHH-hcCCceEEecC------CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence 57888999998 89999999865 578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHH-HHHhhcCCCccEEEEeccCccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-DECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
|++++||+|.++.+++.+++++++++++++++.... ...... ..+ +.+..++..+.... ...
T Consensus 81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~----~~~~~~i~~~~~~~----~~~ 143 (563)
T PLN02860 81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSS---------WYEELQNDRL----PSLMWQVFLESPSS----SVF 143 (563)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccch---------HHHHHhhccC----CceeEEEEecCccc----ccc
Confidence 999999999999999999999999999999875321 111110 011 22333333322110 000
Q ss_pred cCCCCccchhhhcCCC-CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCc
Q 004348 360 WQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l 438 (759)
......+.+++..... ..........++++++|+|||||||.||||+++|++++.+. ......+++.++|+++..+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~-~~~~~~~~~~~~d~~l~~~pl 222 (563)
T PLN02860 144 IFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQS-LAKIAIVGYGEDDVYLHTAPL 222 (563)
T ss_pred cchhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHH-HHHHhhcCCCCCCEEEEecCc
Confidence 0000001111111110 00011112457899999999999999999999999965443 334456789999999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
+|+.++ ..++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++..........+++||.+++||
T Consensus 223 ~h~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG 297 (563)
T PLN02860 223 CHIGGL-SSALAMLMVGACHVLLPK----FDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGG 297 (563)
T ss_pred hhhccH-HHHHHHHHcCceEEecCC----CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCC
Confidence 999986 467899999999999753 489999999999999999999999999987643222234678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC--------------------C-CCCCCCcCCCCCCceE
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--------------------W-PQKPGSATFPFFGVQP 577 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~--------------------~-~~~~~~iG~p~~g~~~ 577 (759)
++++++++++|.+.++ ++++++.||+||++..++...... . .....++|+|++++++
T Consensus 298 ~~l~~~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v 375 (563)
T PLN02860 298 GSLSSRLLPDAKKLFP--NAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVEL 375 (563)
T ss_pred CcCCHHHHHHHHHhcC--CCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEE
Confidence 9999999999999986 488999999999976443211100 0 0112368999999999
Q ss_pred EEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEe
Q 004348 578 VIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHR 638 (759)
Q Consensus 578 ~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~r 638 (759)
+|+|++ .|+.|||+|+| |+++.|||++++.+...+.. +|||+|||+|+ +|++
T Consensus 376 ~i~~~~-----~g~~Gel~v~g--~~~~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~ 446 (563)
T PLN02860 376 KIGLDE-----SSRVGRILTRG--PHVMLGYWGQNSETASVLSN--DGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGEN 446 (563)
T ss_pred EEecCC-----CCceeEEEEec--CcccccccCCccccchhccC--CCeEEccceEEEcCCCCEEEeecccceeEECCEE
Confidence 999876 57899999999 89999999999988877643 78999999988 8999
Q ss_pred eCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCC-----------cHHHHHHHHHHHHh-hcCCCcccc
Q 004348 639 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY-----------SEELRKSLVLAVRK-QIGAFAAPD 706 (759)
Q Consensus 639 I~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~-----------~~~l~~~l~~~l~~-~Lp~~~vP~ 706 (759)
|+|.|||++|.+||+|.+|+|++++++..++.++|+|+++++... .....++|++++++ +|++|++|+
T Consensus 447 v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~ 526 (563)
T PLN02860 447 VYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPK 526 (563)
T ss_pred ccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccce
Confidence 999999999999999999999999998889999999998865210 01125688999987 599999999
Q ss_pred EEEEe-CCCCCCCCCcccHHHHHHHHhcccCC
Q 004348 707 KIHWA-PGLPKTRSGKIMRRILRKIASRQLDE 737 (759)
Q Consensus 707 ~iv~v-~~lP~T~~GKvdR~~L~~~~~~~~~~ 737 (759)
.|+++ ++||+|++|||+|++|++++.+..+.
T Consensus 527 ~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~~~ 558 (563)
T PLN02860 527 LFVQWRKPFPLTTTGKIRRDEVRREVLSHLQS 558 (563)
T ss_pred EEEEEecCCCCCcccchhHHHHHHHHHHHHhc
Confidence 98775 67999999999999999998876554
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=590.67 Aligned_cols=474 Identities=23% Similarity=0.284 Sum_probs=389.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|.++++ ++||++|+++. .+.+||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 44 ~~~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 116 (537)
T PRK13382 44 GPTSGFAIAAQ-RCPDRPGLIDE------LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRI 116 (537)
T ss_pred CHHHHHHHHHH-hCCCCeEEEeC------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHc
Confidence 47788999998 89999999965 578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|++.... ..+....... +....++.+....
T Consensus 117 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 174 (537)
T PRK13382 117 GADILLLNTSFAGPALAEVVTREGVDTVIYDEEFS---------ATVDRALADC----PQATRIVAWTDED--------- 174 (537)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhH---------HHHHHHHhhc----cccceEEEecCCc---------
Confidence 99999999999999999999999999999976532 2222222211 2222233222110
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
....+++......... ....+++.++|+|||||||+||||+++|++++. ........+.+..+++++...|++|
T Consensus 175 ---~~~~~~~~~~~~~~~~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~ 248 (537)
T PRK13382 175 ---HDLTVEVLIAAHAGQR--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIG-TLKAILDRTPWRAEEPTVIVAPMFH 248 (537)
T ss_pred ---ccccHHHHhhccCcCC--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHH-HHHHHHHhhCCCCCCeEEEecChHh
Confidence 0122332222211111 123468899999999999999999999988543 3444555677888999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..++ ..++.++..|+++++... ++++.+++.|+++++|++..+|++++.|++.........+++++|.+++|||+
T Consensus 249 ~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~ 323 (537)
T PRK13382 249 AWGF-SQLVLAASLACTIVTRRR----FDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSR 323 (537)
T ss_pred hhHH-HHHHHHHhcCcEEEECCC----cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCC
Confidence 9886 578889999999988642 58999999999999999999999999998765332234456789999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
++++++++|.+.+| .+++|.||+||++.+++.... .....++++|+|++|+.++|+|++++++|.|+.|||+|+|
T Consensus 324 l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g- 398 (537)
T PRK13382 324 MRPDVVIAFMDQFG---DVIYNNYNATEAGMIATATPA-DLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRN- 398 (537)
T ss_pred CCHHHHHHHHHHcC---CcEEecccccccCcceecChh-HhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEc-
Confidence 99999999999987 579999999999876543321 1134567899999999999999999999999999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
|+++.||+ ++.+.. + .+|||+|||+++ +|+||+|.|||++|.+||+|.+++|++
T Consensus 399 -~~~~~gY~--~~~~~~-~---~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~ 471 (537)
T PRK13382 399 -DTQFDGYT--SGSTKD-F---HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIG 471 (537)
T ss_pred -CCcccCcc--ccchhh-c---cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEc
Confidence 89999998 444432 2 268999999988 899999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
++++..++.+++||++.++.... .++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 472 ~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 472 VDDEQYGQRLAAFVVLKPGASAT---PETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred cCccccCCEEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 99887889999999987664433 578999999999999999999999999999999999999874
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-66 Score=594.78 Aligned_cols=480 Identities=18% Similarity=0.167 Sum_probs=378.3
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
+++.+.|.+.++ ++|+++|+.+.. .+++||+||.++++++|+.|.+ .+||+|+|+++|++++++++|||++
T Consensus 19 ~~~~~~~~~~~~-~~p~~~a~~~~~-----~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~ 89 (539)
T PRK06334 19 KTVLESFLKLCS-EMTTATVCWDEQ-----LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLL 89 (539)
T ss_pred CcHHHHHHHHHH-hCCCceEEEeCC-----CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHh
Confidence 367888999998 899999998642 3689999999999999999987 3899999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++.+++.++|+++++++||++++.. ..+.+..... . .....+++++....
T Consensus 90 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~--~-~~~~~~i~~~~~~~------- 150 (539)
T PRK06334 90 SGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLM---------QHLAQTHGED--A-EYPFSLIYMEEVRK------- 150 (539)
T ss_pred cCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHH---------HHHhhhhhcc--c-cccccEEEEehhhh-------
Confidence 999999999999999999999999999999875431 1111111000 0 00112333322100
Q ss_pred cCCCCccchhhhcC-----CCC-----CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCC
Q 004348 360 WQDGRDIWWQDVVP-----KYP-----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPS 429 (759)
Q Consensus 360 ~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~ 429 (759)
...+.+... ..+ .........++++++|+|||||||.||||+++|++++.+ .......++++++
T Consensus 151 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~ 224 (539)
T PRK06334 151 -----ELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLAN-QRACLKFFSPKED 224 (539)
T ss_pred -----hccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHH-HHHHHHhcCCCCC
Confidence 000000000 000 001112356799999999999999999999999995544 4445566888999
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCC
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (759)
|++++.+|++|.+++...++.+|..|+++++.... +++..+++.|+++++|++.++|++++.|++... ....+++
T Consensus 225 d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~ 299 (539)
T PRK06334 225 DVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNP---LYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAK--KQESCLP 299 (539)
T ss_pred ceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCC---CCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhh--hcccccc
Confidence 99999999999998777788999999999886432 489999999999999999999999999987643 2234678
Q ss_pred CeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccC
Q 004348 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIE 588 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp 588 (759)
+||.+++||+++++++++++.+.++ ++.+++.||+||++.+++..... .....+++|+|++|++++|+|+ ++++++
T Consensus 300 ~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~~~~~~~~ 376 (539)
T PRK06334 300 SLRFVVIGGDAFKDSLYQEALKTFP--HIQLRQGYGTTECSPVITINTVN-SPKHESCVGMPIRGMDVLIVSEETKVPVS 376 (539)
T ss_pred cccEEEECCccCCHHHHHHHHHHCC--CCeEEecccccccCceEEeccCC-CCCCCCcCceecCCCEEEEEcCCCCccCC
Confidence 9999999999999999999999886 48899999999998765543222 1234567999999999999996 589999
Q ss_pred CCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 589 ~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
.|+.|||+|+| +++++|||++++.+.... .+.+|||+|||+|+ +|+||+|.|||++|.
T Consensus 377 ~g~~Gel~v~g--~~~~~GY~~~~~~~~~~~-~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 453 (539)
T PRK06334 377 SGETGLVLTRG--TSLFSGYLGEDFGQGFVE-LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILM 453 (539)
T ss_pred CCceEEEEEec--CcccccccCCccccccee-eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHH
Confidence 99999999999 899999999998543211 22467999999998 899999999999999
Q ss_pred cCCccce------EEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcc
Q 004348 650 SHPQCAE------AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKI 722 (759)
Q Consensus 650 ~~p~V~e------a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKv 722 (759)
+||+|.+ ++|++.+++ ...+++|++.. . + .++|+++|+++ ++.||+|+.|+++++||+|++|||
T Consensus 454 ~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~~--~--~---~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi 524 (539)
T PRK06334 454 EGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTFP--T--S---ISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKP 524 (539)
T ss_pred HccCCccccccCceEEEcCCCC--ceEEEEEEecc--C--C---hHHHHHHHHhcCCcccccchheeeecccccccCCcc
Confidence 9999998 777777643 24566666532 1 1 46788889886 789999999999999999999999
Q ss_pred cHHHHHHHHhc
Q 004348 723 MRRILRKIASR 733 (759)
Q Consensus 723 dR~~L~~~~~~ 733 (759)
||++|++++..
T Consensus 525 ~r~~L~~~~~~ 535 (539)
T PRK06334 525 DYCSLNALAKS 535 (539)
T ss_pred cHHHHHHHHHH
Confidence 99999998654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-66 Score=608.26 Aligned_cols=507 Identities=18% Similarity=0.204 Sum_probs=389.2
Q ss_pred cHHHHHHhhcccccCCCeEEEEEE---cCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWE---ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
.+++++|+++++ ++||++|+.+. +...+..+.+||+||+++++++|++|+++|+++||+|+|+++|++||++++||
T Consensus 44 ~tl~~~l~~~a~-~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 122 (651)
T PLN02736 44 GTLHDNFVYAVE-TFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHA 122 (651)
T ss_pred CCHHHHHHHHHH-hCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468899999998 89999999642 11112246799999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|+++|++++|+++.++.+++.++|++++++++|+++... +.+......+ +.++.+++.+........
T Consensus 123 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~---------~~~~~~~~~~----~~l~~ii~~~~~~~~~~~ 189 (651)
T PLN02736 123 CSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTL---------NTLLSCLSEI----PSVRLIVVVGGADEPLPS 189 (651)
T ss_pred HHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHH---------HHHHHHhhcC----CCceEEEEECCCchhhhh
Confidence 999999999999999999999999999999999975431 2222222222 455666655321100000
Q ss_pred ccccCCCCccchhhhcCCCCC-CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEe
Q 004348 357 NTKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~ 435 (759)
...........|++.+..... ..+.....++|+++|+|||||||.||||++||++++ .........+++.++|+++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~-~~~~~~~~~~~~~~~d~~l~~ 268 (651)
T PLN02736 190 LPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLI-ANVAGSSLSTKFYPSDVHISY 268 (651)
T ss_pred hhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHH-HHHHHHHhccCCCCCCEEEEe
Confidence 000000112345554432211 112234568999999999999999999999999954 445555566788999999999
Q ss_pred cCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcc-------------
Q 004348 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY------------- 502 (759)
Q Consensus 436 ~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~------------- 502 (759)
+|++|++++. .++.+|..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....
T Consensus 269 lPl~h~~~~~-~~~~~l~~G~~i~~~~~-----~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (651)
T PLN02736 269 LPLAHIYERV-NQIVMLHYGVAVGFYQG-----DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFN 342 (651)
T ss_pred CCHHHHHHHH-HHHHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999864 67889999999998753 6788999999999999999999998876531000
Q ss_pred ----------------c---c-------cCCC-CCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecc
Q 004348 503 ----------------V---T-------RYSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT 555 (759)
Q Consensus 503 ----------------~---~-------~~~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~ 555 (759)
. . +..+ ++||.+++||+++++++++++.+.+| +++++.||+||+++.++.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~~~ 419 (651)
T PLN02736 343 AAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG---GRVLEGYGMTETSCVISG 419 (651)
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC---CCeEEEechHHhchheec
Confidence 0 0 0012 48999999999999999999998887 789999999999875543
Q ss_pred cCCCCCCCCCCCcCCCCCCceEEEECC-CCc---ccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCC
Q 004348 556 PLPGAWPQKPGSATFPFFGVQPVIVDE-KGV---EIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD 631 (759)
Q Consensus 556 ~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~---~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGD 631 (759)
.... ....+++|+|++|++++|+|. ++. ...++..|||+|+| |+++.|||++|+.+.+.|.. +|||+|||
T Consensus 420 ~~~~--~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrg--p~v~~GY~~~~~~t~~~~~~--dgw~~TGD 493 (651)
T PLN02736 420 MDEG--DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRG--PIIFKGYYKDEVQTREVIDE--DGWLHTGD 493 (651)
T ss_pred cCCC--CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecC--CccccccccCHHHHHhhhcc--CCCeeccc
Confidence 3322 245688999999999999983 322 12233469999999 89999999999999887743 79999999
Q ss_pred eee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCC----------C
Q 004348 632 GCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG----------V 681 (759)
Q Consensus 632 l~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~----------~ 681 (759)
+|+ +|++|+|.|||++|.+||.|.+|+|++. ..++.++|+|+++++ .
T Consensus 494 lg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~ 570 (651)
T PLN02736 494 IGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGI 570 (651)
T ss_pred eEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCC
Confidence 998 5999999999999999999999999973 246789999998653 1
Q ss_pred CC--------cHHHHHHHHHHHH-----hhcCCCccccEEEEeCCCC------CCCCCcccHHHHHHHHhcccCCCC
Q 004348 682 PY--------SEELRKSLVLAVR-----KQIGAFAAPDKIHWAPGLP------KTRSGKIMRRILRKIASRQLDELG 739 (759)
Q Consensus 682 ~~--------~~~l~~~l~~~l~-----~~Lp~~~vP~~iv~v~~lP------~T~~GKvdR~~L~~~~~~~~~~~~ 739 (759)
+. .+++.+.|.+.+. ++|+.|++|++|+++++.| +|++|||+|++|++.+.+++++++
T Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~~y 647 (651)
T PLN02736 571 KYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMY 647 (651)
T ss_pred CccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHHHH
Confidence 10 1112223333332 2599999999999999987 799999999999999988877665
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=591.26 Aligned_cols=489 Identities=22% Similarity=0.324 Sum_probs=393.3
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
+.+..+|++ + .+|+++|+++.. ...++||+||.++++++|++|++ .|+++||+|+|+++|++++++++|||+
T Consensus 41 ~~~~~l~~~--~-~~~~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~ 113 (560)
T PLN02574 41 DAVSFIFSH--H-NHNGDTALIDSS----TGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL 113 (560)
T ss_pred CHHHHHhcC--c-ccCCCCEEEECC----CCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence 455666765 4 699999999752 13479999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccc
Q 004348 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 279 kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (759)
++|++++|++|.++.+++.++++++++++++++.+.. .. +... ... ++.+..... .
T Consensus 114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~----~~~~-----~~~-~~~~~~~~~-----~ 169 (560)
T PLN02574 114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENV---------EK----LSPL-----GVP-VIGVPENYD-----F 169 (560)
T ss_pred HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHH---------HH----HHhc-----CCc-EEecCcccc-----c
Confidence 9999999999999999999999999999999976421 11 1111 111 222211100 0
Q ss_pred ccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhCC-CCCcEEEE
Q 004348 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDY-KPSDVYWC 434 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~l-~~~d~~l~ 434 (759)
.........|.+.+.......+.....++++++|+|||||||.||||+++|++++.+...... ..+.. ..+++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 249 (560)
T PLN02574 170 DSKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLA 249 (560)
T ss_pred ccCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEE
Confidence 000001122333333222222223456789999999999999999999999996544322211 11222 34678899
Q ss_pred ecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEE
Q 004348 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (759)
Q Consensus 435 ~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v 514 (759)
.+|++|..++...++.++..|+++++.+. +++..+++.|++|++|++.++|++++.|++.... ....++++||.+
T Consensus 250 ~~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~lr~~ 324 (560)
T PLN02574 250 ALPMFHIYGLSLFVVGLLSLGSTIVVMRR----FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG-VCGEVLKSLKQV 324 (560)
T ss_pred ecchHHHHHHHHHHHHHHhcCCEEEEecC----CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-cccCccccceEE
Confidence 99999999877777788899999998753 4899999999999999999999999999886432 123568899999
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceE
Q 004348 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (759)
Q Consensus 515 ~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~G 593 (759)
++||++++++++++|.+.++ ++++++.||+||++.+.+...........+++|+|++|++++|+| +++++++.|+.|
T Consensus 325 ~~gg~~l~~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~G 402 (560)
T PLN02574 325 SCGAAPLSGKFIQDFVQTLP--HVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCG 402 (560)
T ss_pred EEecccCCHHHHHHHHHHCC--CCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCe
Confidence 99999999999999999886 488999999999986554322222224567899999999999999 689999999999
Q ss_pred EEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCcc
Q 004348 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQC 654 (759)
Q Consensus 594 EL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V 654 (759)
||+|+| ++++.|||++++.+.+.|.. +|||+|||+|+ +|++|++.|||++|.+||+|
T Consensus 403 ei~v~g--~~~~~GY~~~~~~t~~~~~~--~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V 478 (560)
T PLN02574 403 ELWIQG--PGVMKGYLNNPKATQSTIDK--DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEI 478 (560)
T ss_pred EEEEEC--cchhhhhcCChhHhhhhccC--CCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCc
Confidence 999999 89999999999999887653 78999999987 89999999999999999999
Q ss_pred ceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 655 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
.|++|++++++..++.+++||+.+++...+ .++|+++++++|++|++|+.++++++||+|++|||+|+.|++.+.+
T Consensus 479 ~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 479 IDAAVTAVPDKECGEIPVAFVVRRQGSTLS---QEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN 554 (560)
T ss_pred ceEEEEccccCCCCcceEEEEEeCCCCCCC---HHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence 999999999888888999999987655443 4789999999999999999999999999999999999999998864
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=583.50 Aligned_cols=486 Identities=24% Similarity=0.348 Sum_probs=399.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.+++.++++ .+||++|+++.. .++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 24 ~~~~~l~~~~~-~~~~~~a~~~~~----~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~ 98 (537)
T PLN02246 24 PLHDYCFERLS-EFSDRPCLIDGA----TGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRR 98 (537)
T ss_pred cHHHHHHHHHH-hCCCCeEEEecC----CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 47788888888 899999998652 2478999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++..++++++++++|+++... ..+.+.... ..+ .++.++...
T Consensus 99 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~-----~~~-~~i~~~~~~--------- 154 (537)
T PLN02246 99 GAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYV---------DKLKGLAED-----DGV-TVVTIDDPP--------- 154 (537)
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHHHHhhc-----CCc-eEEEeCCCC---------
Confidence 99999999999999999999999999999976532 112111110 122 233333211
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhCCCCCcEEEEecC
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~l~~~d~~l~~~~ 437 (759)
.....+.+.........+.....++++++|+|||||||.||||+++|++++.+...... ..+++.++|+++..+|
T Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 232 (537)
T PLN02246 155 --EGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP 232 (537)
T ss_pred --CCceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeec
Confidence 00112233322222222233456899999999999999999999999996554332221 2467889999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|..++...++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....+++++|.+++|
T Consensus 233 l~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~g 306 (537)
T PLN02246 233 MFHIYSLNSVLLCGLRVGAAILIMPK----FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV--VEKYDLSSIRMVLSG 306 (537)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEeCC----CCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc--ccccCccceeEEEEe
Confidence 99998876778889999999999864 388999999999999999999999999987643 233467899999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCC---CCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceE
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP---GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSG 593 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~G 593 (759)
|+++++++.+++.+.++ +..+++.||+||++.+++.... .....+++++|+|+++++++|+|+ ++++++.|+.|
T Consensus 307 g~~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 384 (537)
T PLN02246 307 AAPLGKELEDAFRAKLP--NAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPG 384 (537)
T ss_pred cCcCCHHHHHHHHHHcC--CCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCce
Confidence 99999999999999986 4789999999999865432211 112235678999999999999994 78999999999
Q ss_pred EEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCcc
Q 004348 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQC 654 (759)
Q Consensus 594 EL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V 654 (759)
||+|+| +.++.||+++++.+...|. .+|||+|||+|+ +|+||+|.|||++|.+||+|
T Consensus 385 el~v~g--~~~~~GY~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v 460 (537)
T PLN02246 385 EICIRG--PQIMKGYLNDPEATANTID--KDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSI 460 (537)
T ss_pred EEEEEC--CchhccccCCchhhhhccc--CCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCe
Confidence 999999 8999999999998877653 378999999988 89999999999999999999
Q ss_pred ceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 655 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
.+|+|++.++...++.++++|+..++...+ .++|+++|+++|++|++|..|+++++||+|++||++|++|++.+.
T Consensus 461 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~ 535 (537)
T PLN02246 461 ADAAVVPMKDEVAGEVPVAFVVRSNGSEIT---EDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLA 535 (537)
T ss_pred eEEEEEcccCccCCceeEEEEEeCCCCCCC---HHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHh
Confidence 999999998888888999999987665443 578999999999999999999999999999999999999998865
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=582.38 Aligned_cols=496 Identities=24% Similarity=0.343 Sum_probs=404.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|++++. .+|+++|+++. ++.+||+||.++++++|..|.+. |+++||+|+|+++|++++++++|||++
T Consensus 11 tl~~~l~~~a~-~~~~~~a~~~~------~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 83 (546)
T PRK08314 11 SLFHNLEVSAR-RYPDKTAIVFY------GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILR 83 (546)
T ss_pred CHHHHHHHHHH-HcCCCcceeec------CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 57888988888 89999999987 67899999999999999999999 999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc---
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE--- 356 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~--- 356 (759)
+|++++|++|.++.+++.+++++++++++|+++... ..+......+ .+..+++..........
T Consensus 84 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 149 (546)
T PRK08314 84 ANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELA---------PKVAPAVGNL-----RLRHVIVAQYSDYLPAEPEI 149 (546)
T ss_pred cCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchh---------hhHHHHhhcc-----CcceEEEecchhhccccccc
Confidence 999999999999999999999999999999986642 1121111111 22233322110000000
Q ss_pred c-----------cccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC
Q 004348 357 N-----------TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (759)
Q Consensus 357 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (759)
. ..........|++...... ..+.....++++++|+|||||||.||||+++|++++.+ .......++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~-~~~~~~~~~ 227 (546)
T PRK08314 150 AVPAWLRAEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMAN-AVGSVLWSN 227 (546)
T ss_pred CcccccccccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHH-HHHHHHhhC
Confidence 0 0000112234544443221 12233456789999999999999999999999996554 444555688
Q ss_pred CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccccc
Q 004348 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (759)
Q Consensus 426 l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~ 505 (759)
+.++|++++..|++|..++.+.++.+|.+|+++++.+. +++..++++++++++|++.++|+++..++.... ...
T Consensus 228 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~--~~~ 301 (546)
T PRK08314 228 STPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR----WDREAAARLIERYRVTHWTNIPTMVVDFLASPG--LAE 301 (546)
T ss_pred CCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC----CCHHHHHHHHHHhcCceecccHHHHHHHHhCCC--ccc
Confidence 89999999999999999987888999999999999864 488999999999999999999999998887543 234
Q ss_pred CCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CC
Q 004348 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KG 584 (759)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g 584 (759)
.+++++|.+++||+++++++++++.+.++ +++++.||+||++......... ....+++|+|++|++++|+|+ ++
T Consensus 302 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~ 376 (546)
T PRK08314 302 RDLSSLRYIGGGGAAMPEAVAERLKELTG---LDYVEGYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETL 376 (546)
T ss_pred cCchhhheeeeccccCCHHHHHHHHHHcC---CcEEecccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCC
Confidence 46789999999999999999999999887 7899999999998765433221 124578999999999999995 78
Q ss_pred cccCCCceEEEEEecCCCcccccccCChhhHHhhhcc-cCCcEEEeCCeee-------------------ccEeeCHHHH
Q 004348 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCS-------------------SGHRIGTAEV 644 (759)
Q Consensus 585 ~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~-~~~g~y~TGDl~~-------------------~G~rI~~~eI 644 (759)
++++.|..|||+|+| ++++.||+++++.+.+.|.. +..+||+|||+|+ +|+||+|.||
T Consensus 377 ~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eI 454 (546)
T PRK08314 377 EELPPGEVGEIVVHG--PQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEV 454 (546)
T ss_pred cCCCCCCceEEEEEC--CchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHH
Confidence 999999999999999 89999999999988877753 2345999999987 7999999999
Q ss_pred HHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccH
Q 004348 645 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724 (759)
Q Consensus 645 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR 724 (759)
|++|.+||+|.+++|++.++...++.+++||+++++.... ...++|+++++++|++|++|..++++++||+|.|||++|
T Consensus 455 E~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~-~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r 533 (546)
T PRK08314 455 ENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK-TTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILW 533 (546)
T ss_pred HHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCC-CCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeH
Confidence 9999999999999999999888889999999988764321 114789999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004348 725 RILRKIASR 733 (759)
Q Consensus 725 ~~L~~~~~~ 733 (759)
++|++...+
T Consensus 534 ~~L~~~~~~ 542 (546)
T PRK08314 534 RQLQEQEKA 542 (546)
T ss_pred HHHHHHHhh
Confidence 999987653
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=583.66 Aligned_cols=495 Identities=20% Similarity=0.315 Sum_probs=395.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|+++++ .+|+++|++.. ++.+||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||++
T Consensus 25 ~~~~~l~~~a~-~~p~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 25 NIQAVLKQSCQ-RFADKPAFSNL------GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred cHHHHHHHHHH-hCCCCeeEEEC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57888998888 89999999965 5789999999999999999997 6999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccc--
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN-- 357 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-- 357 (759)
+|++++|++|.++.+++.+++++++++++|++.... ..+.+.... ..++.++..+.........
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 163 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMA---------HLAEKVLPK-----TGVKHVIVTEVADMLPPLKRL 163 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecchh---------hhHHHhhhc-----cCcceeEEecccccccchhhh
Confidence 999999999999999999999999999999876532 111111111 1223232221100000000
Q ss_pred ------------c-ccCCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH
Q 004348 358 ------------T-KWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (759)
Q Consensus 358 ------------~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (759)
. .........|.+.+.... .........++++++|+|||||||+||||+++|++++.+. ......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~-~~~~~~ 242 (562)
T PRK05677 164 LINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANM-LQCRAL 242 (562)
T ss_pred hcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHH-HHHHHH
Confidence 0 000001122333222111 1111223467999999999999999999999999965443 333333
Q ss_pred hC--CCC-CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCC
Q 004348 424 FD--YKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (759)
Q Consensus 424 ~~--l~~-~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~ 500 (759)
++ +.. .+++++.+|+.|..++.+.++.++..|++.++.+.. .++..+++.|+++++|+++.+|+++..|+....
T Consensus 243 ~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 319 (562)
T PRK05677 243 MGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNP---RDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA 319 (562)
T ss_pred hccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCc---ccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc
Confidence 33 443 468899999999998777788889999988777542 478999999999999999999999999887532
Q ss_pred cccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEE
Q 004348 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580 (759)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~Iv 580 (759)
....+++++|.+++||++++++++++|.+.++ +++++.||+||++.++...... ..+++++|+|++++.++|+
T Consensus 320 --~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~ 392 (562)
T PRK05677 320 --FRKLDFSALKLTLSGGMALQLATAERWKEVTG---CAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVI 392 (562)
T ss_pred --cccCChhhceEEEEcCccCCHHHHHHHHHHcC---CCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEE
Confidence 22345679999999999999999999999876 7899999999998765433221 2356789999999999999
Q ss_pred CCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCH
Q 004348 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGT 641 (759)
Q Consensus 581 D~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~ 641 (759)
|++++++|.|+.|||+|+| |.+++||+++++.+.+.|.. +|||+|||+|+ +|++|+|
T Consensus 393 d~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~--~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p 468 (562)
T PRK05677 393 DDDGNELPLGEVGELCVKG--PQVMKGYWQRPEATDEILDS--DGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYP 468 (562)
T ss_pred CCCCCCCCCCCCeEEEEec--CccchhhcCCchhhhhccCC--CCcccccceEEECCCCcEEEEecCcCeEEeCCEEECH
Confidence 9999999999999999999 89999999999998877643 68999999987 8999999
Q ss_pred HHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCc
Q 004348 642 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721 (759)
Q Consensus 642 ~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GK 721 (759)
.|||++|.+||+|.+++|++++++..++.+++||+++++...+ .++|+++++++|++|++|..|+++++||+|+|||
T Consensus 469 ~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK 545 (562)
T PRK05677 469 NELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLT---KEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGK 545 (562)
T ss_pred HHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCC---HHHHHHHHHHhhhhccCCcEEEEeccCCCCCccc
Confidence 9999999999999999999999888889999999987654433 5789999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcc
Q 004348 722 IMRRILRKIASRQ 734 (759)
Q Consensus 722 vdR~~L~~~~~~~ 734 (759)
++|++|++.+..+
T Consensus 546 i~r~~L~~~~~~~ 558 (562)
T PRK05677 546 ILRRELRDEELKK 558 (562)
T ss_pred ccHHHHHHHHHHh
Confidence 9999999876543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-64 Score=574.57 Aligned_cols=487 Identities=24% Similarity=0.331 Sum_probs=407.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.+.|++++. .+|+++|+++. ++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 6 ~i~~~l~~~~~-~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~ 78 (513)
T PRK07656 6 TLPELLARAAR-RFGDKEAYVFG------DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKA 78 (513)
T ss_pred cHHHHHHHHHH-HCCCCeEEEeC------CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 57889999888 89999999986 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++..++++++++++++++... .........+ +.++.++....... . .
T Consensus 79 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----~-~ 139 (513)
T PRK07656 79 GAVVVPLNTRYTADEAAYILARGDAKALFVLGLFL---------GVDYSATTRL----PALEHVVICETEED-----D-P 139 (513)
T ss_pred CeEEEecCcccCHHHHHHHHhhcCceEEEEchhhH---------HHHHHHHhcc----CCccEEEEEcCccc-----c-c
Confidence 99999999999999999999999999999987642 1122222222 34444444432211 0 0
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
.......|++.........+.....++++++|+|||||||.||+|.++|+++ ..........++++++|++++.+++.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (513)
T PRK07656 140 HTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQL-LSNAADWAEYLGLTEGDRYLAANPFFH 218 (513)
T ss_pred CccccccHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHH-HHHHHHHHHhhCCCCCCeEEEccchHH
Confidence 0112234555544333222334467889999999999999999999999995 444555667789999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
.+++...++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ...+++++|.+++||++
T Consensus 219 ~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~l~~v~~~g~~ 292 (513)
T PRK07656 219 VFGYKAGVNAPLMRGATILPLPV----FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDR--SAEDLSSLRLAVTGAAS 292 (513)
T ss_pred HHHHHHHHHHHHHcCceEEecCc----CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCc--CCCCccceeeEEecCCC
Confidence 99987788999999999988643 3899999999999999999999999999887542 23467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC-CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++++|.+.++. .++++.||+||++++.+...... ....++++|+|++|+.++|+|+++++++.|..|||+|+|
T Consensus 293 ~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~ 370 (513)
T PRK07656 293 MPVALLERFESELGV--DIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRG 370 (513)
T ss_pred CCHHHHHHHHHHcCC--CceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEc
Confidence 999999999999872 28999999999987665443222 112367899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVV 660 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv 660 (759)
+.++.||+++++.+...+. .+|||+|||+|+ +|.||+|.|||++|.+|++|.+++|+
T Consensus 371 --~~~~~gy~~~~~~~~~~~~--~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 446 (513)
T PRK07656 371 --PNVMKGYYDDPEATAAAID--ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVI 446 (513)
T ss_pred --chhhhhhcCCHHHHhhhhc--cCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 8999999999988877653 378999999988 89999999999999999999999999
Q ss_pred eEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
+.++...++.+++||+.+++...+ .++|+++++++||++++|..|+++++||+|++||++|+.|++
T Consensus 447 ~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 447 GVPDERLGEVGKAYVVLKPGAELT---EEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred ecCCcccCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 998887888999999987644433 478999999999999999999999999999999999999975
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-64 Score=578.30 Aligned_cols=500 Identities=20% Similarity=0.232 Sum_probs=399.0
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~i 271 (759)
+|++....+++.++|+++++ ++|+++|+++.+ ..+.+||+||.++++++|++|.+.|+++||+|+|+++|+++++
T Consensus 8 ~~~~~~~~~~l~~~l~~~a~-~~p~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~ 82 (534)
T PRK05852 8 APMASDFGPRIADLVEVAAT-RLPEAPALVVTA----DRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFV 82 (534)
T ss_pred cchhhhhcccHHHHHHHHHH-hCCCCcEEEecC----CCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHH
Confidence 56666677789999999998 899999999752 2468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCc
Q 004348 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (759)
Q Consensus 272 va~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~ 351 (759)
+++|||+++|++++|++|.++.+++.++|++++++++|+++....... .... ......+.+....
T Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~ 147 (534)
T PRK05852 83 VALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA---------EPTT------RWWPLTVNVGGDS 147 (534)
T ss_pred HHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc---------cccc------cccceeeeecccc
Confidence 999999999999999999999999999999999999998764321000 0000 0001111111100
Q ss_pred cccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcE
Q 004348 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431 (759)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~ 431 (759)
... ... ....+...... ..........++++++|+|||||||.||||+++|+++. .........+++.++|+
T Consensus 148 ~~~--~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~-~~~~~~~~~~~~~~~d~ 219 (534)
T PRK05852 148 GPS--GGT----LSVHLDAATEP-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIA-SSVRAIITGYRLSPRDA 219 (534)
T ss_pred ccc--ccc----cccccccccCC-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHH-HHHHHHHHHhCCCCcce
Confidence 000 000 00001111100 00011112235788999999999999999999999954 44555566788999999
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCe
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (759)
+++..|+.|..++...++.+|+.|+++++.... .+++..+++.|+++++|+++++|+++..|.+.........+++++
T Consensus 220 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l 297 (534)
T PRK05852 220 TVAVMPLYHGHGLIAALLATLASGGAVLLPARG--RFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAAL 297 (534)
T ss_pred EEEecCcchhHHHHHHHHHHHhcCCeEEeCCCc--CcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCe
Confidence 999999999999877889999999998875432 248889999999999999999999999998865432223457899
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC------CCCCCCCCcCCCCCCceEEEECCCCc
Q 004348 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------AWPQKPGSATFPFFGVQPVIVDEKGV 585 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~------~~~~~~~~iG~p~~g~~~~IvD~~g~ 585 (759)
|.++++|+++++++++++.+.++ .++++.||+||++..++..... ......+..|+ .+|++++|+|++++
T Consensus 298 r~i~~~G~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~ 373 (534)
T PRK05852 298 RFIRSCSAPLTAETAQALQTEFA---APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGL 373 (534)
T ss_pred eEEEECCCCCCHHHHHHHHHHhC---CChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCC
Confidence 99999999999999999999987 7899999999998654432111 00112233444 69999999999999
Q ss_pred ccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHH
Q 004348 586 EIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVES 646 (759)
Q Consensus 586 ~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~ 646 (759)
+++.|+.|||+|+| +.+++|||++++.+.+.|. +|||+|||+++ +|.+|+|.|||+
T Consensus 374 ~~~~g~~Gel~v~g--~~v~~gY~~~~~~t~~~~~---~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~ 448 (534)
T PRK05852 374 PLPAGAVGEVWLRG--TTVVRGYLGDPTITAANFT---DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEG 448 (534)
T ss_pred CCCCCCceEEEEec--CcccchhcCCcccchhhhc---CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHH
Confidence 99999999999999 8999999999999888763 68999999988 799999999999
Q ss_pred HHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHH
Q 004348 647 ALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 726 (759)
Q Consensus 647 ~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~ 726 (759)
+|.+||+|.+|+|++++++..++.++++|+.++....+ .++|+++++++||.|++|+.|++++++|+|++||++|++
T Consensus 449 ~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~---~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~ 525 (534)
T PRK05852 449 VLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT---AEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRA 525 (534)
T ss_pred HHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHH
Confidence 99999999999999999888889999999987654333 578999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 004348 727 LRKIASR 733 (759)
Q Consensus 727 L~~~~~~ 733 (759)
|++.+..
T Consensus 526 L~~~~~~ 532 (534)
T PRK05852 526 VAEQFGH 532 (534)
T ss_pred HHHHhcc
Confidence 9998753
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=576.96 Aligned_cols=487 Identities=23% Similarity=0.323 Sum_probs=395.8
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+|+++|+++..+..+..+.+||+||+++++++|.+|++.|+++|++|+++++|++++++++|||+++
T Consensus 23 ~~~~~~~~~~~-~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 101 (538)
T TIGR03208 23 TINDHFDAAVA-NCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI 101 (538)
T ss_pred cHHHHHHHHHH-HCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 57788999998 89999999874322233578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++.... .............+ +....++..+...
T Consensus 102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 164 (538)
T TIGR03208 102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRG----FDHAAMARELQSKL----PALRQVVVIDGDG--------- 164 (538)
T ss_pred CEEEeccCcccCHHHHHHHHHhcCCeEEEEcccccc----ccHHHHHHHHhccC----CcceEEEEecCCC---------
Confidence 999999999999999999999999999999765421 11112222221111 3334455443221
Q ss_pred CCCCccchhhhcCCC-----CC---CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEE
Q 004348 361 QDGRDIWWQDVVPKY-----PT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~ 432 (759)
...|++.+... +. ........++++++|+|||||||.||||+++|++++ .........+++..+|++
T Consensus 165 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~-~~~~~~~~~~~~~~~d~~ 239 (538)
T TIGR03208 165 ----DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLF-SNIHPYAERLELGGGDVI 239 (538)
T ss_pred ----CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHH-HHHHHHHhhcCCCCCCeE
Confidence 01122111100 00 011123467899999999999999999999999954 444455566788899999
Q ss_pred EEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCee
Q 004348 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (759)
Q Consensus 433 l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr 512 (759)
++.+|++|..++.+.++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|...... ...+++++|
T Consensus 240 l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~--~~~~~~~l~ 313 (538)
T TIGR03208 240 LMASPMAHQTGFMYGLMMPLILNATAVLQDI----WNPARAAELIRETGVTFTMASTPFLTDLCRAVKE--SGAPVPSLF 313 (538)
T ss_pred EEeCCchhHHHHHHHHHHHHHcCCEEEecCc----cCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc--cCCCCCcce
Confidence 9999999998888889999999999998743 4899999999999999999999999988765421 234678999
Q ss_pred EEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCce
Q 004348 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592 (759)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~ 592 (759)
.+++||+++++++++++.+.++ ++++|.||+||++.+.+............++|+|++|++++|+|+++++++.|+.
T Consensus 314 ~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~ 390 (538)
T TIGR03208 314 TFLCAGAPIPGILVERAWELLG---ALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET 390 (538)
T ss_pred EEEEcCCCCCHHHHHHHHHHcC---CeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC
Confidence 9999999999999999999886 7899999999998765433221111234578999999999999999999999999
Q ss_pred EEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 593 GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
|||+|+| +.++.||+++++.+.. ..+|||+|||+|+ +|++|+|.|||++|.+||+
T Consensus 391 Gel~v~g--~~~~~gy~~~~~~~~~----~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~ 464 (538)
T TIGR03208 391 GRLLVRG--CSNFGGYLKRPHLNST----DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPA 464 (538)
T ss_pred cEEEEec--CcccccccCCcccccc----cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcc
Confidence 9999999 8899999999986542 2478999999988 8999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
|.+++|++.++...++.++++|++.++...+ .+++++++++ +++.|++|..|++++++|+|++||++|+.|+
T Consensus 465 v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 465 VAQVAIVAYPDERLGERACAVVVPKPGCTLD---FAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred eeeEEEEeccCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 9999999999887889999999987665443 4678888985 7999999999999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=595.81 Aligned_cols=509 Identities=18% Similarity=0.238 Sum_probs=382.8
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcC---CCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
+++.++|+++++ ++||++|+.+... ..+..+.+||+||+++++++|++|+++|+++||+|+|+++|++||++++||
T Consensus 45 ~t~~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA 123 (666)
T PLN02614 45 DSCWDVFRMSVE-KYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123 (666)
T ss_pred CcHHHHHHHHHH-hCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 478899999998 8999999986321 111234689999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|+++|+++||++|.++.+++.++|++++++++|+++.. +......+....+.++.++.++........
T Consensus 124 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~------------~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~ 191 (666)
T PLN02614 124 CNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK------------ISELFKTCPNSTEYMKTVVSFGGVSREQKE 191 (666)
T ss_pred HHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH------------HHHHHHhcccccccceEEEEeCCCChHHhh
Confidence 99999999999999999999999999999999997542 111111110000224556655431100000
Q ss_pred ccccCCCCccchhhhcCCCCC-CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH-----hCCCCCc
Q 004348 357 NTKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-----FDYKPSD 430 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~-----~~l~~~d 430 (759)
...........|++++..... ..+.....++|+++|+|||||||.||||++||++++.+ ....... +++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~-~~~~~~~~~~~~~~~~~~d 270 (666)
T PLN02614 192 EAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTL-IAGVIRLLKSANAALTVKD 270 (666)
T ss_pred hhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHH-HHHHHhhccccccCCCCCc
Confidence 000000011234444332111 11122346799999999999999999999999996544 3333222 2578899
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccc-------
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV------- 503 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~------- 503 (759)
++++++|++|.++... ++..+..|+++++.+ +++..+++.|+++++|+++++|++++.|........
T Consensus 271 ~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~ 344 (666)
T PLN02614 271 VYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-----GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLK 344 (666)
T ss_pred EEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHH
Confidence 9999999999988643 556788999998864 278999999999999999999999998764210000
Q ss_pred ----------------------c-------------cCCC-CCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccc
Q 004348 504 ----------------------T-------------RYSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT 547 (759)
Q Consensus 504 ----------------------~-------------~~~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~T 547 (759)
. ...+ ++||.+++||+++++++ ++|.+.++ ++++++.||+|
T Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~--~~~i~~~YG~T 421 (666)
T PLN02614 345 KFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVA--CCHVLQGYGLT 421 (666)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhc--CCCEEeeCchH
Confidence 0 0011 68999999999999875 56667775 47899999999
Q ss_pred cccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CC--CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCC
Q 004348 548 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624 (759)
Q Consensus 548 E~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~--g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~ 624 (759)
|+++..+...+.. ..+.+++|+|++|++++|+| ++ +++++.|+.|||+|+| |+++.|||++|+.|.+.| . +
T Consensus 422 E~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrG--p~v~~GY~~~pe~T~~~f-~--d 495 (666)
T PLN02614 422 ESCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRG--KTLFSGYYKREDLTKEVL-I--D 495 (666)
T ss_pred hhhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcC--CcccccccCCHHHhhhhh-c--c
Confidence 9986544333221 23568999999999999998 33 4789999999999999 899999999999999887 2 7
Q ss_pred cEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCC---
Q 004348 625 GYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--- 681 (759)
Q Consensus 625 g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~--- 681 (759)
|||+|||+|+ +|++|+|.|||++|.+||.|.+|+|++..+ ...++|+|++....
T Consensus 496 Gw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~---~~~l~alvv~~~~~~~~ 572 (666)
T PLN02614 496 GWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF---ESFLVAIANPNQQILER 572 (666)
T ss_pred CCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEeCCHHHHHH
Confidence 9999999998 599999999999999999999999998642 23699999986421
Q ss_pred -------C-------CcHHHHHHHHHHH-----HhhcCCCccccEEEEeCC-C-----CCCCCCcccHHHHHHHHhcccC
Q 004348 682 -------P-------YSEELRKSLVLAV-----RKQIGAFAAPDKIHWAPG-L-----PKTRSGKIMRRILRKIASRQLD 736 (759)
Q Consensus 682 -------~-------~~~~l~~~l~~~l-----~~~Lp~~~vP~~iv~v~~-l-----P~T~~GKvdR~~L~~~~~~~~~ 736 (759)
. .++++.+.|.+.+ ++.|+.|.+++.|+++++ | -+|+++|+.|+.+.+.|..+++
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~ 652 (666)
T PLN02614 573 WAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVID 652 (666)
T ss_pred HHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHH
Confidence 0 0122334444443 356999999999999874 3 3899999999999999998888
Q ss_pred CCCC
Q 004348 737 ELGD 740 (759)
Q Consensus 737 ~~~~ 740 (759)
+++.
T Consensus 653 ~ly~ 656 (666)
T PLN02614 653 EMYK 656 (666)
T ss_pred HHHH
Confidence 7763
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=567.72 Aligned_cols=471 Identities=21% Similarity=0.285 Sum_probs=393.7
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+.+.|+++++ .+||++|+++. ++.+||+||.++++++|++|++ .|+++|++|+++++|++++++++|||+++
T Consensus 4 ~~~~~~~~a~-~~p~~~a~~~~------~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 76 (496)
T PRK06839 4 IAYWIEKRAY-LHPDRIAIITE------EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV 76 (496)
T ss_pred HHHHHHHHHH-HCCCCeEEEEC------CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 4567888998 89999999976 7899999999999999999985 79999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++..++++++++++++++... ..+.+.... .....++.+.+
T Consensus 77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~----------- 131 (496)
T PRK06839 77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQ---------NMALSMQKV-----SYVQRVISITS----------- 131 (496)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHH---------HHHHHhhhc-----cCcceEEEecc-----------
Confidence 99999999999999999999999999999876532 111111110 11222332221
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
+.+...... .......++++++|+|||||||.||+|+++|.+++.+.. .....+++.++|+++...|+.|
T Consensus 132 -------~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~ 201 (496)
T PRK06839 132 -------LKEIEDRKI--DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL-NNTFAIDLTMHDRSIVLLPLFH 201 (496)
T ss_pred -------hHhhhccCC--CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHH-HHHHHcCCCCCCeEEEeeCCcc
Confidence 111111111 112234568899999999999999999999999544433 3345578889999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..++.+.++.++..|+++++.+. ++++.++++++++++|++.++|++++.|++... ....+++++|.+++||++
T Consensus 202 ~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~~ 275 (496)
T PRK06839 202 IGGIGLFAFPTLFAGGVIIVPRK----FEPTKALSMIEKHKVTVVMGVPTIHQALINCSK--FETTNLQSVRWFYNGGAP 275 (496)
T ss_pred hhhHHHHHHHHHhcCcEEEEccC----CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc--cccCCCcccceEEECCCC
Confidence 98877777889999999988643 489999999999999999999999999988753 233567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
+++++++++.+. | +++++.||+||++...+.........+.+++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 276 ~~~~~~~~~~~~-g---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~- 350 (496)
T PRK06839 276 CPEELMREFIDR-G---FLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRG- 350 (496)
T ss_pred CCHHHHHHHHHh-C---CeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEEC-
Confidence 999999999886 5 78999999999987544332222234567899999999999999999999999999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
+.++.||+++++.+...+ .+|||+|||+++ +|.+|+|.|||++|.+||+|.+|+|++
T Consensus 351 -~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~ 426 (496)
T PRK06839 351 -PNVMKEYWNRPDATEETI---QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVG 426 (496)
T ss_pred -CCcchhhcCChHHHHHHH---cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence 899999999998877654 378999999988 799999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
++++..++.++++|+++++...+ .++|+++++++|++|++|..|++++++|+|.+||++|++|+++..
T Consensus 427 ~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~ 494 (496)
T PRK06839 427 RQHVKWGEIPIAFIVKKSSSVLI---EKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLK 494 (496)
T ss_pred ccccccCceEEEEEEECCCCCCC---HHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhh
Confidence 99988889999999998765544 478999999999999999999999999999999999999998764
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=574.66 Aligned_cols=501 Identities=22% Similarity=0.276 Sum_probs=405.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++|+++|+++.+ .++.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~~~-~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~ 93 (558)
T PRK12583 19 TIGDAFDATVA-RFPDREALVVRH----QALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARI 93 (558)
T ss_pred cHHHHHHHHHH-HCCCCeEEEecC----CCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhh
Confidence 68999999998 899999999852 2578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHh--------h-cCCCccEEEEeccCc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA--------K-SGISVDVCLTYENQS 351 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~--------~-~~~~~~~vi~~~~~~ 351 (759)
|++++|+++.++.+++.+++++++++++|+.+...... +...+......+. . .-+.+..++......
T Consensus 94 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (558)
T PRK12583 94 GAILVNINPAYRASELEYALGQSGVRWVICADAFKTSD----YHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP 169 (558)
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccc----hhHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence 99999999999999999999999999999987543211 1111111111110 0 001222223222111
Q ss_pred cccccccccCCCCccchhhhcCCCC------CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC
Q 004348 352 AMTRENTKWQDGRDIWWQDVVPKYP------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (759)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (759)
......|++...... .........++++++++|||||||.||||+++|++++ .........++
T Consensus 170 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~-~~~~~~~~~~~ 238 (558)
T PRK12583 170 ----------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNIL-NNGYFVAESLG 238 (558)
T ss_pred ----------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHH-HHHHHHHHHhC
Confidence 001122332221111 0111123457889999999999999999999999954 44555566688
Q ss_pred CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccccc
Q 004348 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (759)
Q Consensus 426 l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~ 505 (759)
+.++|+++...|++|..+..+.++.++..|+++++.... +++..+++.++++++|++.++|+++..++.... ...
T Consensus 239 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~ 313 (558)
T PRK12583 239 LTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEA---FDPLATLQAVEEERCTALYGVPTMFIAELDHPQ--RGN 313 (558)
T ss_pred CCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCC---CCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc--ccC
Confidence 999999999999999999888899999999999876432 488999999999999999999999988876543 233
Q ss_pred CCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC-CCCCCCCCcCCCCCCceEEEECCCC
Q 004348 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKG 584 (759)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~~iG~p~~g~~~~IvD~~g 584 (759)
.++++||.+++||+++++++++++.+.++ ...+++.||+||++.+.+..... ....+..++|+|++++.++|+|+++
T Consensus 314 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~ 391 (558)
T PRK12583 314 FDLSSLRTGIMAGAPCPIEVMRRVMDEMH--MAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDG 391 (558)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHHcC--CcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCC
Confidence 56789999999999999999999999987 35799999999999765543221 1223567899999999999999999
Q ss_pred cccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHH
Q 004348 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVE 645 (759)
Q Consensus 585 ~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE 645 (759)
++++.|+.|||+|+| +.++.||+++++.+...+. .+|||+|||+++ +|.+|+|.|||
T Consensus 392 ~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE 467 (558)
T PRK12583 392 ATVPRGEIGELCTRG--YSVMKGYWNNPEATAESID--EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIE 467 (558)
T ss_pred CCCCCCCeeEEEEEe--CccchhhcCChHHHHhhcC--CCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHH
Confidence 999999999999999 8999999999998877653 368999999987 79999999999
Q ss_pred HHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHH
Q 004348 646 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 725 (759)
Q Consensus 646 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~ 725 (759)
++|.+||+|.+++|++++++..++.++++|+..++...+ .++|+++++++||+|++|..++++++||+|++||++|+
T Consensus 468 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~ 544 (558)
T PRK12583 468 EFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAAS---EEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKF 544 (558)
T ss_pred HHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCC---HHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHH
Confidence 999999999999999999887788999999987654433 57899999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 004348 726 ILRKIASRQL 735 (759)
Q Consensus 726 ~L~~~~~~~~ 735 (759)
.|++++..+.
T Consensus 545 ~L~~~~~~~~ 554 (558)
T PRK12583 545 RMREISIEEL 554 (558)
T ss_pred HHHHHHHhhc
Confidence 9999977543
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=576.23 Aligned_cols=486 Identities=20% Similarity=0.269 Sum_probs=382.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.+.|.++++ .+|+++|+++.+ .++.+||+||+++++++|+.|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 15 ~~~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~ 89 (540)
T PRK05857 15 TVLDRVFEQAR-QQPEAIALRRCD----GTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKL 89 (540)
T ss_pred chHHHHHHHHh-hCCCcEEEeecC----CCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 56788888888 899999998652 2467999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.++++.++++++|+++....... .+.+.. ..+. .+.++.... .
T Consensus 90 G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~------~~~~~~-------~~~~-~~~~~~~~~----~--- 148 (540)
T PRK05857 90 GAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASS------AVPEAL-------HSIP-VIAVDIAAV----T--- 148 (540)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccc------cccccc-------cccc-eeEeecccc----c---
Confidence 999999999999999999999999999999876431110 000000 1111 122221100 0
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH----HHhCCCCCcEEEEec
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK----YAFDYKPSDVYWCTA 436 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~----~~~~l~~~d~~l~~~ 436 (759)
.. +.+...... ........++++++|+|||||||.||||+++|++++.+ ..... ..++...+++++...
T Consensus 149 ----~~-~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (540)
T PRK05857 149 ----RE-SEHSLDAAS-LAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAV-PDILQKEGLNWVTWVVGETTYSPL 221 (540)
T ss_pred ----cc-ccccccccc-cccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhh-hHHhhhccccccccccCceeeecC
Confidence 00 000000000 01122346789999999999999999999999996543 22211 124566788999999
Q ss_pred CcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEE
Q 004348 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (759)
Q Consensus 437 ~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (759)
|+.|+.++ +..+.+|+.|+++++.+ .++..++++|++|++|+++++|++++.|++... ....+++++|.+++
T Consensus 222 p~~h~~~l-~~~~~~l~~G~~~v~~~-----~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~ 293 (540)
T PRK05857 222 PATHIGGL-WWILTCLMHGGLCVTGG-----ENTTSLLEILTTNAVATTCLVPTLLSKLVSELK--SANATVPSLRLVGY 293 (540)
T ss_pred CccccchH-HHHHHHhhcceeEEecC-----CChhHHHHHHHhcCcceEEeChHHHHHHHhccc--cCCCcCccceEEEE
Confidence 99999986 46788999999987632 277899999999999999999999999987643 23357889999999
Q ss_pred eCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceEEEECCCCcc------c
Q 004348 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVE------I 587 (759)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~~IvD~~g~~------v 587 (759)
||++++....++ .+.++ +++++.||+||++...+...... ...+++++|+|++|++++|+|++++. +
T Consensus 294 gG~~~~~~~~~~-~~~~g---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~ 369 (540)
T PRK05857 294 GGSRAIAADVRF-IEATG---VRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAG 369 (540)
T ss_pred cCccCCchhHHH-HHHhC---CeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccC
Confidence 999999888764 45665 88999999999986443221111 12346789999999999999987753 2
Q ss_pred CCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHH
Q 004348 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESAL 648 (759)
Q Consensus 588 p~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L 648 (759)
+.|+.|||+|+| |++++|||++++.+.+.|. +|||+|||+|+ +|+||+|.|||++|
T Consensus 370 ~~~~~Gel~v~g--~~~~~GY~~~~~~t~~~~~---~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l 444 (540)
T PRK05857 370 PSASFGTLWIKS--PANMLGYWNNPERTAEVLI---DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIA 444 (540)
T ss_pred CCCCcceEEEeC--cchhhhhhCCccchhhhcC---CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHH
Confidence 457899999999 8999999999999888774 68999999998 89999999999999
Q ss_pred hcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCC--cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHH
Q 004348 649 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY--SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 726 (759)
Q Consensus 649 ~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~--~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~ 726 (759)
..||+|.+|+|+++++...++.++++|+..+.... .+++.+.+.+++++++++|++|..|++++++|+|++||+||++
T Consensus 445 ~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~ 524 (540)
T PRK05857 445 EGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRAS 524 (540)
T ss_pred HhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHH
Confidence 99999999999999988777888888887654321 2345677778888999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 004348 727 LRKIASRQLD 736 (759)
Q Consensus 727 L~~~~~~~~~ 736 (759)
|++++.+...
T Consensus 525 l~~~~~~~~~ 534 (540)
T PRK05857 525 LAAAATADKA 534 (540)
T ss_pred HHHhhhhccc
Confidence 9999887543
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=572.98 Aligned_cols=495 Identities=23% Similarity=0.294 Sum_probs=399.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+|+++|+++. ++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 33 ~l~~~~~~~~~-~~p~~~a~~~~------~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 105 (573)
T PRK05605 33 TLVDLYDNAVA-RFGDRPALDFF------GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRL 105 (573)
T ss_pred CHHHHHHHHHH-HCCCCeEEEeC------CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 47888999998 89999999986 578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccc-----
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR----- 355 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~----- 355 (759)
|++++|++|.++.+++.+++++++++++|+++... ..+...... ..+..++.++.......
T Consensus 106 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~ 171 (573)
T PRK05605 106 GAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVA---------PTVERLRRT-----TPLETIVSVNMIAAMPLLQRLA 171 (573)
T ss_pred CcEEeecCcCCCHHHHHHHHhccCCcEEEechhhH---------HHHHhhhhc-----cccceeEeeecccccccccccc
Confidence 99999999999999999999999999999976532 111111111 12333333321100000
Q ss_pred ------------cccccCCCCccchhhhcCCCCCC----CCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHH
Q 004348 356 ------------ENTKWQDGRDIWWQDVVPKYPTK----CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419 (759)
Q Consensus 356 ------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~ 419 (759)
+.........+.|.+........ .......++++++|+|||||||.||+|+++|++++.+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~ 251 (573)
T PRK05605 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQG 251 (573)
T ss_pred cccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHH
Confidence 00000011223455443321111 12233567899999999999999999999999965544322
Q ss_pred HHHHhCCC-CCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhc
Q 004348 420 FKYAFDYK-PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (759)
Q Consensus 420 ~~~~~~l~-~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~ 498 (759)
.....++. .++++++..|+.|..++.+.++.++..|+++++.+. ++++.+++.|+++++|++.++|++++.|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~ 327 (573)
T PRK05605 252 KAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA----PDIDLILDAMKKHPPTWLPGVPPLYEKIAEA 327 (573)
T ss_pred HhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCEEEEchHHHHHHHHhC
Confidence 22222233 468999999999988877778888999999999864 3899999999999999999999999999876
Q ss_pred CCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEE
Q 004348 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (759)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~ 578 (759)
.. ....++++||.+++||+++++++.++|.+.++ .++++.||+||+++++...... ...+++++|+|++|+.++
T Consensus 328 ~~--~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~ 401 (573)
T PRK05605 328 AE--ERGVDLSGVRNAFSGAMALPVSTVELWEKLTG---GLLVEGYGLTETSPIIVGNPMS-DDRRPGYVGVPFPDTEVR 401 (573)
T ss_pred cc--ccCCCchhccEEEECCCcCCHHHHHHHHHHhC---CCeecccccchhchhhhcCCcc-cCCcCCccccCCCCCEEE
Confidence 53 23446789999999999999999999998876 7899999999998765543221 123567899999999999
Q ss_pred EECCC--CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccE
Q 004348 579 IVDEK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGH 637 (759)
Q Consensus 579 IvD~~--g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~ 637 (759)
|+|++ +++++.|..|||+|+| +.++.||+++++.+...|. +|||+|||+++ +|+
T Consensus 402 i~d~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~ 476 (573)
T PRK05605 402 IVDPEDPDETMPDGEEGELLVRG--PQVFKGYWNRPEETAKSFL---DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGF 476 (573)
T ss_pred EEcCCCCCccCCCCCeeEEEEec--CchhhhhcCChhHhhhccc---CCCcccCCEEEEcCCCcEEEEeccccceeeCCE
Confidence 99976 5899999999999999 8999999999998887764 57999999988 899
Q ss_pred eeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCC
Q 004348 638 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717 (759)
Q Consensus 638 rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T 717 (759)
+|+|.|||++|.+|+.|.+++|++++++..++.++++|+++++...+ .++|+++++++|+.|++|..|+++++||+|
T Consensus 477 ~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t 553 (573)
T PRK05605 477 NVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD---PEGLRAYCREHLTRYKVPRRFYHVDELPRD 553 (573)
T ss_pred EECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC---HHHHHHHHHHhCccccCCcEEEEeccCCCC
Confidence 99999999999999999999999999888889999999988765443 578999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcc
Q 004348 718 RSGKIMRRILRKIASRQ 734 (759)
Q Consensus 718 ~~GKvdR~~L~~~~~~~ 734 (759)
.+||++|++|++++..+
T Consensus 554 ~~GKi~r~~L~~~~~~~ 570 (573)
T PRK05605 554 QLGKVRRREVREELLEK 570 (573)
T ss_pred CcccccHHHHHHHHHHH
Confidence 99999999999988654
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-63 Score=563.82 Aligned_cols=475 Identities=21% Similarity=0.294 Sum_probs=395.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++|+++|+++. ++.+||.||.++++++|.+|.+.|+++|++|+++++|++++++++|||+++
T Consensus 3 ~~~~~~~~~~~-~~~~~~a~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~ 75 (497)
T PRK06145 3 NLSASIAFHAR-RTPDRAALVYR------DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYL 75 (497)
T ss_pred cHHHHHHHHHH-HCCCceEEEEC------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 35688999998 89999999976 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++++++..... . .. . ...+.++....
T Consensus 76 G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-------------~-~~-----~-~~~~~~~~~~~-------- 127 (497)
T PRK06145 76 GAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAI-------------V-AL-----E-TPKIVIDAAAQ-------- 127 (497)
T ss_pred CcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhh-------------h-hc-----c-cceEEecCccc--------
Confidence 9999999999999999999999999999997653210 0 00 0 11121211100
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
..+.................++++++|+|||||||.||||+++|++++.. .......+++..+++++...|+.|
T Consensus 128 -----~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~ 201 (497)
T PRK06145 128 -----ADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWK-SIDHVIALGLTASERLLVVGPLYH 201 (497)
T ss_pred -----chhHHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHH-HHHHHHhhCCCCCcEEEEecCchh
Confidence 00000000000011112346789999999999999999999999995543 334445678999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..++.+..+.++..|+++++.+. +++..+++.++++++|++.++|++++.|+..... ...+++++|.+++|||+
T Consensus 202 ~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--~~~~~~~l~~~~~gG~~ 275 (497)
T PRK06145 202 VGAFDLPGIAVLWVGGTLRIHRE----FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--DRFDLDSLAWCIGGGEK 275 (497)
T ss_pred HhHHHHHHHHHHhccCEEEECCc----CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--cccccccceEEEecCCC
Confidence 88876666788999999998753 4899999999999999999999999999876542 34467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
+++++++++.+.++ +.++++.||+||++...+...........+++|+|+++++++|+|+++++++.|+.|||+++|
T Consensus 276 ~~~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g- 352 (497)
T PRK06145 276 TPESRIRDFTRVFT--RARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRG- 352 (497)
T ss_pred CCHHHHHHHHHHcC--CCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEEC-
Confidence 99999999999987 478999999999987544332222223567899999999999999999999999999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
+.++.||+++++.+...|. ++||+|||+++ +|++|+|.|||++|.+||+|.+++|++
T Consensus 353 -~~~~~Gy~~~~~~~~~~~~---~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~ 428 (497)
T PRK06145 353 -PKVTKGYWKDPEKTAEAFY---GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIG 428 (497)
T ss_pred -cchhhhhcCChHHHHHHHh---CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEe
Confidence 8999999999999988874 68999999987 799999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
.+++..++.+++++++.+..... .++|+++++++|++|++|..|+++++||+|++||++|++|++.+.
T Consensus 429 ~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 429 VHDDRWGERITAVVVLNPGATLT---LEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred cCCCccCceEEEEEEECCCCCCC---HHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 99888888999999987654433 578999999999999999999999999999999999999998764
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=565.58 Aligned_cols=493 Identities=24% Similarity=0.298 Sum_probs=407.2
Q ss_pred ccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 199 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
.+++.++|.++++ .+|+++|+++. ++.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+
T Consensus 10 ~~~l~~~l~~~a~-~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~ 82 (523)
T PRK08316 10 RQTIGDILRRSAR-RYPDKTALVFG------DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACA 82 (523)
T ss_pred CCCHHHHHHHHHH-HCCCCeEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3478999999998 89999999986 6889999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccc
Q 004348 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 279 kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (759)
++|++++|+++.++.+++..+++.++++++++++... ..+....+.. . ...+...... ..
T Consensus 83 ~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~-~~~~~~~~~~------~~ 142 (523)
T PRK08316 83 RAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA---------PTAEAALALL----P-VDTLILSLVL------GG 142 (523)
T ss_pred hcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchH---------HHHHHHhhhc----C-ccceeeeecc------cc
Confidence 9999999999999999999999999999999987542 2222222221 1 1111110000 00
Q ss_pred ccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCc
Q 004348 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l 438 (759)
.........+.+.....+..........+++++|+|||||||.||+|.++|++++.+ .......+++.++|+++...|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~ 221 (523)
T PRK08316 143 REAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAE-YVSCIVAGDMSADDIPLHALPL 221 (523)
T ss_pred cccccchhhHHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHH-HHHHHHHhCCCCCceEEEccCC
Confidence 000111223333333222222333467789999999999999999999999995444 4445566889999999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
.|..++...++.++..|+++++.+. ++++.+++.|+++++|++.++|+++..|.+... ....+++++|.+++||
T Consensus 222 ~h~~g~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~gg 295 (523)
T PRK08316 222 YHCAQLDVFLGPYLYVGATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD--FDTRDLSSLRKGYYGA 295 (523)
T ss_pred chhhhHHHHHHHHHhcCceEEEecC----CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc--cccCCcccceEEEEcC
Confidence 9988865566677899999999864 389999999999999999999999999987653 2345778999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEe
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++.++.+++.+.++ ++++++.||+||++.+.............+++|+|+++++++|+|+++++++.|+.|||+++
T Consensus 296 ~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~ 373 (523)
T PRK08316 296 SIMPVEVLKELRERLP--GLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHR 373 (523)
T ss_pred CcCCHHHHHHHHHHcC--CCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEE
Confidence 9999999999999885 48899999999998765543222223456789999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| ++++.||+++++.+...| .+|||+|||+|+ +|++|+|.|||+.|.++++|.+++|
T Consensus 374 ~--~~~~~~y~~~~~~~~~~~---~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v 448 (523)
T PRK08316 374 S--PQLMLGYWDDPEKTAEAF---RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAV 448 (523)
T ss_pred C--CchhhhhcCCHHHHHHHh---hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeE
Confidence 9 899999999999888776 368999999988 7999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
++.+++..++.++++++++++...+ .++|+++++++|+.|++|..+++++++|+|++||++|++|++.+.+.+
T Consensus 449 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~ 521 (523)
T PRK08316 449 IGLPDPKWIEAVTAVVVPKAGATVT---EDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF 521 (523)
T ss_pred ecccCcccCCeEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence 9999988889999999988765433 577899999999999999999999999999999999999999997654
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=574.76 Aligned_cols=494 Identities=21% Similarity=0.216 Sum_probs=380.5
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCC----CcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDP----GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~----~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
.+.++|+++++ ++||++|+++.+... ...+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 7 ~~~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la 85 (552)
T PRK09274 7 NIARHLPRAAQ-ERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA 85 (552)
T ss_pred hHHHHHHHHHH-hCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence 35677888887 899999999863210 0123899999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|+++|++++|++|.++.+++.+++++++++++|+++... ....+... .......++.++....
T Consensus 86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-----------~~~~~~~~--~~~~~~~~i~~~~~~~---- 148 (552)
T PRK09274 86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-----------LARRLFGW--GKPSVRRLVTVGGRLL---- 148 (552)
T ss_pred HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH-----------HHHHHhcc--Cccchhheeccccccc----
Confidence 999999999999999999999999999999999864210 00101000 0011222332221100
Q ss_pred ccccCCCCccchhhhcCCC-CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEe
Q 004348 357 NTKWQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~ 435 (759)
.....+.+..... ..........++++++|+|||||||.||||+++|+++ ..........+++.++|+.++.
T Consensus 149 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~ 221 (552)
T PRK09274 149 ------WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMF-EAQIEALREDYGIEPGEIDLPT 221 (552)
T ss_pred ------cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHH-HHHHHHHHHHhCCCCCceeeec
Confidence 0011233322111 1112223456789999999999999999999999995 4445556667899999999988
Q ss_pred cCcchhchhhHHHHHHhhcCcEEEEecCC---CCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCee
Q 004348 436 ADCGWITGHSYVTYGPMLNGASVVVFEGA---PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (759)
Q Consensus 436 ~~l~~~~g~~~~~~~~L~~G~tlvl~~~~---~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr 512 (759)
.|+.|.. ++..|+++++.+.. +..+++..+++.|+++++|+++++|++++.|.+... ....++++||
T Consensus 222 ~pl~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~~lr 291 (552)
T PRK09274 222 FPLFALF--------GPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGE--ANGIKLPSLR 291 (552)
T ss_pred cCHHHhh--------hhhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhh--hcCCCCchhh
Confidence 8875532 24568888876422 123588999999999999999999999999987643 2344789999
Q ss_pred EEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC------C--CCCCCCCcCCCCCCceEEEECC--
Q 004348 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------A--WPQKPGSATFPFFGVQPVIVDE-- 582 (759)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~------~--~~~~~~~iG~p~~g~~~~IvD~-- 582 (759)
.+++|||++++++++++.+.++. ++++++.||+||++.+++..... . ......++|+|++|++++|+|+
T Consensus 292 ~~~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~ 370 (552)
T PRK09274 292 RVISAGAPVPIAVIERFRAMLPP-DAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISD 370 (552)
T ss_pred EEEecCCcCCHHHHHHHHHHcCC-CceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccc
Confidence 99999999999999999999863 37899999999998754432211 0 0112347899999999999984
Q ss_pred -------CCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCc--EEEeCCeee-------------------
Q 004348 583 -------KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCS------------------- 634 (759)
Q Consensus 583 -------~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g--~y~TGDl~~------------------- 634 (759)
++++++.|+.|||+|+| |.++.|||++++.+...|+.+.+| ||+|||+|+
T Consensus 371 ~~~~~~~~~~~~~~g~~Gel~v~g--~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~ 448 (552)
T PRK09274 371 APIPEWDDALRLATGEIGEIVVAG--PMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET 448 (552)
T ss_pred cccccccccccCCCCCeeEEEEec--CcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE
Confidence 56789999999999999 899999999999998887654566 999999998
Q ss_pred ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCCccccEEEEeCC
Q 004348 635 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPG 713 (759)
Q Consensus 635 ~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~ 713 (759)
+|++|+|.|||++|.+||+|.+|+|++++++ .++.++++|++.++...+ +++.++++++++. ++.++.|..++++++
T Consensus 449 ~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~ 526 (552)
T PRK09274 449 AGGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPVLCVELEPGVACSKSALYQELRALAAA-HPHTAGIERFLIHPS 526 (552)
T ss_pred CCEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEEEEEEccCccccchHHHhhhhHHHHHh-cCCCcceeEEeccCC
Confidence 7999999999999999999999999999876 466889999988765433 3345566665544 356678899999999
Q ss_pred CCCC--CCCcccHHHHHHHHhcc
Q 004348 714 LPKT--RSGKIMRRILRKIASRQ 734 (759)
Q Consensus 714 lP~T--~~GKvdR~~L~~~~~~~ 734 (759)
||+| +||||||++|++++...
T Consensus 527 lP~t~~~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 527 FPVDIRHNAKIFREKLAVWAAKQ 549 (552)
T ss_pred CCccccccccccHHHHHHHHHHh
Confidence 9999 79999999999987643
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=566.55 Aligned_cols=482 Identities=21% Similarity=0.308 Sum_probs=392.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+|+++|+++. .+.+||+||.++++++|..|.++|+++|++|+++++|++++++++|||+++
T Consensus 24 ~l~~~~~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 96 (527)
T TIGR02275 24 PLTDILRDQAA-RYPDAIAIICG------NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKL 96 (527)
T ss_pred cHHHHHHHHHH-HCCCceEEEeC------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence 47789999998 89999999875 679999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++++++.++.+++.++++.++++++++++.... .............+ +.++.++...... .
T Consensus 97 G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~ 160 (527)
T TIGR02275 97 GIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSL----FDYDAFARQLQSKL----PTLRNIIVAGQTR--------V 160 (527)
T ss_pred CeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccc----cchHHHHHHHHhhC----CcceEEEEecCCC--------C
Confidence 999999999999999999999999999999765321 01111111111111 2333333322110 0
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
.......+.......+.....++++++|+|||||||.||||+++|.+++.+ .......+.++++|++++.+|++|
T Consensus 161 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~-~~~~~~~~~~~~~d~~l~~~P~~h 235 (527)
T TIGR02275 161 ----EAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYS-VRRSVEICWLTQQTRYLCALPAAH 235 (527)
T ss_pred ----cchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHH-HHHHHhhcCCCcCCEEEECCChHh
Confidence 000000111111112223456789999999999999999999999996544 444556688999999999999999
Q ss_pred hchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
.+++.. .++.+|..|+++++.+. +++..+++.++++++|++.++|+++..|++.... ...+++++|.+++||+
T Consensus 236 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~gG~ 309 (527)
T TIGR02275 236 NYPLSSPGALGVFYAGGCVVLAPD----PSPTDCFPLIERHKVTVTALVPPAVALWMQAASK--SRYDLSSLKLLQVGGA 309 (527)
T ss_pred hhhhhHHHHHHHHhcCCeEEECCC----CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccc--cCCCccceEEEEEcCC
Confidence 887654 57889999999988643 4889999999999999999999999998876542 3456789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCC-CceEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~-g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++++++.+.++ +++++.||+||++..... .........+++|+|++ +..++|+|+++++++.|+.|||+|+
T Consensus 310 ~l~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~ 385 (527)
T TIGR02275 310 KFSEAAARRVPAVFG---CQLQQVFGMAEGLVNYTR-LDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTR 385 (527)
T ss_pred CCCHHHHHHHHHHhC---CeEEeeeccCccCccccC-CCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999999887 789999999997643321 11111234568999994 8899999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| +.++.||+++++.+...|.. +|||+|||+++ +|++|+|.|||++|.+||+|.+|+|
T Consensus 386 g--~~~~~gY~~~~~~~~~~~~~--dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v 461 (527)
T TIGR02275 386 G--PYTFRGYYKAPEHNAAAFDA--EGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAAL 461 (527)
T ss_pred C--CccchhhcCChhHhHhhcCc--CCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEE
Confidence 9 89999999999998877644 78999999988 7999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
++.++...++.+++||+++++.. + .++|+++++++ +|.|++|..|+++++||+|++||++|++|+
T Consensus 462 ~~~~~~~~~~~~~a~vv~~~~~~-~---~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 462 VSMPDELLGEKSCAFIVVRDPAL-K---AAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EecCCcccccEEEEEEEECCCCC-C---HHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 99999888899999999876532 2 57899999985 999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=567.94 Aligned_cols=494 Identities=23% Similarity=0.339 Sum_probs=400.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++.+ ++.+||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 24 ~l~~~~~~~~~-~~pd~~a~~~~~-----~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~ 97 (547)
T PRK06087 24 SLADYWQQTAR-AMPDKIAVVDNH-----GASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKV 97 (547)
T ss_pred CHHHHHHHHHH-HCCCceEEEcCC-----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 47889999998 899999998641 378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++++++..... ...+.+......+ +.+..++.++....
T Consensus 98 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 161 (547)
T PRK06087 98 GAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQT----RPVDLILPLQNQL----PQLQQIVGVDKLAP-------- 161 (547)
T ss_pred CcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccc----cHHHHHHHHHhhC----CCCcEEEEeCCcCC--------
Confidence 9999999999999999999999999999997653211 1222232222222 34445555443210
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
......+.+.....+.........++++++|+|||||||.||||+++|++++.. .......+++.++|++++..|+.|
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~l~~~pl~h 239 (547)
T PRK06087 162 -ATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-ERAYCARLNLTWQDVFMMPAPLGH 239 (547)
T ss_pred -CcCccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHH-HHHHHHhcCCCCCCeEEEecchHH
Confidence 001123333333222211222356789999999999999999999999995544 444556678899999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
.+++...++.+++.|+++++.+. +++..+++.|+++++|++..+|+.+..+++... ....++++||.+++||++
T Consensus 240 ~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~--~~~~~~~~lr~i~~gG~~ 313 (547)
T PRK06087 240 ATGFLHGVTAPFLIGARSVLLDI----FTPDACLALLEQQRCTCMLGATPFIYDLLNLLE--KQPADLSALRFFLCGGTT 313 (547)
T ss_pred HHHHHHHHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccc--cCCCCCCCeEEEEEcCCC
Confidence 99877788999999999999754 489999999999999999887776666665532 123467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
+++++.+.+.+. + +++++.||+||++...+...........+++|+|++++.++|+|+++++++.|+.|||+|+|
T Consensus 314 ~~~~~~~~~~~~-~---~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g- 388 (547)
T PRK06087 314 IPKKVARECQQR-G---IKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRG- 388 (547)
T ss_pred CCHHHHHHHHHc-C---CcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEec-
Confidence 999999887764 4 88999999999987654332221122345789999999999999999999999999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
+.++.||+++++.+...+.. +|||+|||+++ +|.+|+|.+||++|.++|+|.+++|++
T Consensus 389 -~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~ 465 (547)
T PRK06087 389 -PNVFMGYLDEPELTARALDE--EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVA 465 (547)
T ss_pred -ccccccccCCHHHHHHHhCC--CCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence 89999999999988777643 68999999988 799999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCC-CCCcHHHHHHHHHHHH-hhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 662 VEHEVKGQGIYAFVTLVEG-VPYSEELRKSLVLAVR-KQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~-~~~~~~l~~~l~~~l~-~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
.+++..+++++++|++.+. ...+ .+++.+++. +.++.|++|..|.++++||+|.+||++|+.|++.+..+.
T Consensus 466 ~~~~~~g~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~ 538 (547)
T PRK06087 466 MPDERLGERSCAYVVLKAPHHSLT---LEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL 538 (547)
T ss_pred cCCCCcCceEEEEEEECCCCCCCC---HHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence 9988888999999998753 2222 467777775 579999999999999999999999999999999887654
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=562.54 Aligned_cols=488 Identities=26% Similarity=0.353 Sum_probs=410.7
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ .+|+++|+.+. ++.+||+||+++++++|+.|.+.|+++|++|++++++++++++++|||+++
T Consensus 7 ~l~~~l~~~~~-~~p~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~ 79 (521)
T PRK06187 7 TIGRILRHGAR-KHPDKEAVYFD------GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKI 79 (521)
T ss_pred CHHHHHHHHHH-HCCCceEEEeC------CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 68899999999 89999999987 567999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++..+++.+++++++++... ...+......+ +.++.++.++.... ..
T Consensus 80 G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~------~~ 140 (521)
T PRK06187 80 GAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEF---------VPLLAAILPQL----PTVRTVIVEGDGPA------AP 140 (521)
T ss_pred CeEEEecccCCCHHHHHHHHHhcCCeEEEEcchH---------HHHHHHHhhcc----CCccEEEEecCccc------cc
Confidence 9999999999999999999999999999998753 23333333332 34455555543321 00
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
.......+.+.+...+...+.....++++++|+|||||||.||+|.++|++++ .........+++.++|++++.++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~-~~~~~~~~~~~~~~~d~~~~~~~~~~ 219 (521)
T PRK06187 141 LAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLF-LHSLAVCAWLKLSRDDVYLVIVPMFH 219 (521)
T ss_pred cccccccHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHH-HHHHHHHHhhCCCCCCEEEEeCCchH
Confidence 11123345555444443333445667899999999999999999999999954 44444556789999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..++.. .+.++..|+++++.+.. ++..+++.|+++++|+++++|++++.|.+.... ...++++||.+++|||+
T Consensus 220 ~~~~~~-~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~l~~v~~~Ge~ 292 (521)
T PRK06187 220 VHAWGL-PYLALMAGAKQVIPRRF----DPENLLDLIETERVTFFFAVPTIWQMLLKAPRA--YFVDFSSLRLVIYGGAA 292 (521)
T ss_pred HhhHHH-HHHHHHhCCEEEecCCC----CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--CccCcchhhEEEEcCcC
Confidence 887544 44599999999998652 889999999999999999999999999887653 34578899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCC----CCCCCCcCCCCCCceEEEECCCCcccCC--CceEE
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW----PQKPGSATFPFFGVQPVIVDEKGVEIEG--ECSGY 594 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~----~~~~~~iG~p~~g~~~~IvD~~g~~vp~--g~~GE 594 (759)
++++++++|.+.++ +++++.||+||++.+......... .....++|+|++++.++|+|+++++++. |..||
T Consensus 293 l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Ge 369 (521)
T PRK06187 293 LPPALLREFKEKFG---IDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGE 369 (521)
T ss_pred CCHHHHHHHHHHhC---cchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeE
Confidence 99999999999885 889999999999876554322211 1256789999999999999999999998 99999
Q ss_pred EEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccc
Q 004348 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCA 655 (759)
Q Consensus 595 L~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ 655 (759)
|+|+| +.++.||+++++.+...|. +|||+|||+++ +|.+|+|.+||++|.++++|.
T Consensus 370 l~v~~--~~~~~~y~~~~~~~~~~~~---~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~ 444 (521)
T PRK06187 370 IIVRG--PWLMQGYWNRPEATAETID---GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVA 444 (521)
T ss_pred EEEEC--cchhhhhcCCHHHHHHHhh---CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCce
Confidence 99999 8899999999998887764 56999999988 899999999999999999999
Q ss_pred eEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 656 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 656 ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+++|++.+++..++.++++++++++...+ .++++++++++|+.|++|..|+++++||+|++||++|+.|++++..
T Consensus 445 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 445 EVAVIGVPDEKWGERPVAVVVLKPGATLD---AKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred EEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 99999998887788999999987765443 5789999999999999999999999999999999999999998864
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=565.67 Aligned_cols=481 Identities=23% Similarity=0.314 Sum_probs=395.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++. ++.+||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 22 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 22 TLPAMLARQAE-RYPDRPLLVFG------GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred CHHHHHHHHHH-HCCCCeEEEeC------CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 57899999999 89999999976 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++..+++++++++++++.... ..+...... ...+..++.++.... .
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~-------~ 154 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALL---------AALEAADPG----DLPLPAVWLLDAPAS-------V 154 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhH---------HHHHHhccc----ccCcceEEEecCccc-------c
Confidence 99999999999999999999999999999976532 111111110 022344554443210 0
Q ss_pred CCCCccchhhh-cCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDV-VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.. ...|... ..............++++++|+|||||||.||||+++|++++. ........+++++++++++..|++
T Consensus 155 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~-~~~~~~~~~~~~~~~~~l~~~pl~ 231 (542)
T PRK06155 155 SV--PAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYW-WGRNSAEDLEIGADDVLYTTLPLF 231 (542)
T ss_pred cc--ccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHH-HHHHHHHhcCCCCCCEEEEecCHH
Confidence 00 0011100 0001111112234678999999999999999999999999544 344456668899999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++ ..++.+++.|+++++.+. .++..+++.|+++++|++.++|+++..|++.... .....+++|.++.||
T Consensus 232 ~~~~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~l~~~~~g~- 303 (542)
T PRK06155 232 HTNAL-NAFFQALLAGATYVLEPR----FSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR--ESDRAHRVRVALGPG- 303 (542)
T ss_pred HHHHH-HHHHHHHHcCceEEeeCC----CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc--cccccCceEEEEEcC-
Confidence 99885 467899999999998753 3899999999999999999999999999877542 234567899887666
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
+++++.+++.+.++ ++++|.||+||++..+..... ...++++|+|++++.++|+|++++++|.|..|||+|+|
T Consensus 304 -~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~ 376 (542)
T PRK06155 304 -VPAALHAAFRERFG---VDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRA 376 (542)
T ss_pred -CCHHHHHHHHHHcC---CCEEeeecccccCccccCCCC---CCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEec
Confidence 57899999999887 789999999999876543221 24567899999999999999999999999999999999
Q ss_pred CCC-cccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 600 SWP-GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 600 ~~~-~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
+.| +++.||+++++.+...| .+|||+|||+|+ +|.+|+|.|||++|.+||+|.+|+|
T Consensus 377 ~~~~~~~~GY~~~~~~~~~~~---~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v 453 (542)
T PRK06155 377 DEPFAFATGYFGMPEKTVEAW---RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAV 453 (542)
T ss_pred CCccccchhhcCCHHHHHHhh---cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEE
Confidence 433 79999999999888775 378999999988 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
++++++..++.+.++++++++...+ ..+++++++++|+.|++|..|+++++||+|++||++|++|++++.
T Consensus 454 ~~v~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 454 FPVPSELGEDEVMAAVVLRDGTALE---PVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred EeecccccCceEEEEEEECCCCCCC---HHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 9999888888899999987665443 578999999999999999999999999999999999999998764
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=565.62 Aligned_cols=485 Identities=22% Similarity=0.354 Sum_probs=395.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|.++++ .+||++|+++. ++.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 8 ~~~~~~~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~ 80 (528)
T PRK07470 8 NLAHFLRQAAR-RFPDRIALVWG------DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRL 80 (528)
T ss_pred CHHHHHHHHHH-HCCCceEEEEC------CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 36688888888 89999999975 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++++++... +.+....... .....++.+....
T Consensus 81 G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 138 (528)
T PRK07470 81 GAVWVPTNFRQTPDEVAYLAEASGARAMICHADFP---------EHAAAVRAAS----PDLTHVVAIGGAR--------- 138 (528)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCceEEEEcchhH---------HHHHHHHhhC----CcCceEEEeCCCc---------
Confidence 99999999999999999999999999999987642 1111111111 2334444443211
Q ss_pred CCCCccchhhhcCCC-CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHh-CCCCCcEEEEecCc
Q 004348 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF-DYKPSDVYWCTADC 438 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~-~l~~~d~~l~~~~l 438 (759)
....|.+..... ..........++++++|+|||||||.||||+++|++++..........+ ++.++|+++..+|+
T Consensus 139 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~ 215 (528)
T PRK07470 139 ---AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPL 215 (528)
T ss_pred ---ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccc
Confidence 012333333221 1112223456789999999999999999999999995433222222222 56788999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
+|..++ ..+ ..++.|+++++.+.. .++++.+++.|+++++|++.++|++++.|.+... ....+++++|.+++||
T Consensus 216 ~~~~~~-~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG 289 (528)
T PRK07470 216 SHGAGI-HQL-CQVARGAATVLLPSE--RFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA--VDRYDHSSLRYVIYAG 289 (528)
T ss_pred hhHHHH-HHH-HHHhcCceEEEeccc--CcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC--cCCCCCcceEEEEEcC
Confidence 999885 334 467888888887643 2488999999999999999999999999987643 2335678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC------CCCCCCCCcCCCCCCceEEEECCCCcccCCCce
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~------~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~ 592 (759)
+++++.+.+++.+.+| .++++.||+||+++.++..... ......+++|+|++|+.++|+|+++++++.|+.
T Consensus 290 ~~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~ 366 (528)
T PRK07470 290 APMYRADQKRALAKLG---KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGET 366 (528)
T ss_pred CCCCHHHHHHHHHHhC---cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCc
Confidence 9999999999988887 6799999999998755432111 012245689999999999999999999999999
Q ss_pred EEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 593 GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
|||+|+| +.++.||+++++.+...|. +|||+|||+++ +|+||+|.|||++|.++|.
T Consensus 367 Gel~i~~--~~~~~gy~~~~~~~~~~~~---~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~ 441 (528)
T PRK07470 367 GEICVIG--PAVFAGYYNNPEANAKAFR---DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPA 441 (528)
T ss_pred eEEEEeC--CccchhhcCCHHHHHhhhc---CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCC
Confidence 9999999 8999999999998877652 78999999988 7999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
|.+|+|++.+++..++.++++++..++...+ .++++++|+++||+|++|..++++++||+|++||++|+.|++++.+
T Consensus 442 v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 518 (528)
T PRK07470 442 VSEVAVLGVPDPVWGEVGVAVCVARDGAPVD---EAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEE 518 (528)
T ss_pred ceEEEEEeccCcccCceeEEEEEECCCCCCC---HHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHh
Confidence 9999999999887788899999987765433 5789999999999999999999999999999999999999998875
Q ss_pred c
Q 004348 734 Q 734 (759)
Q Consensus 734 ~ 734 (759)
.
T Consensus 519 ~ 519 (528)
T PRK07470 519 R 519 (528)
T ss_pred c
Confidence 4
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=560.55 Aligned_cols=460 Identities=26% Similarity=0.351 Sum_probs=384.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++++.|++++. .+||++|+++. .+.+||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++
T Consensus 3 ~~~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~ 75 (483)
T PRK03640 3 TMPNWLKQRAF-LTPDRTAIEFE------EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75 (483)
T ss_pred cHHHHHHHHHH-hCCCceEEEeC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 47788999998 89999999976 688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++..++++++++++|+++..... .... ..
T Consensus 76 G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-------------~~~~----~~-------------------- 118 (483)
T PRK03640 76 GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAK-------------LIPG----IS-------------------- 118 (483)
T ss_pred CcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHH-------------Hhhh----cc--------------------
Confidence 9999999999999999999999999999997653210 0000 00
Q ss_pred CCCCccchhhhcCCC-CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
..|.+..... ..........++++++|+|||||||.||||+++|++++... ......++++++|++++..|++
T Consensus 119 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~ 192 (483)
T PRK03640 119 -----VKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSA-VGSALNLGLTEDDCWLAAVPIF 192 (483)
T ss_pred -----ccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHH-HHHHHhcCCCcCcEEEEecCHH
Confidence 0011111100 01111123467899999999999999999999999965543 3344458899999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++ ..++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|....... ....+||.+++||+
T Consensus 193 ~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---~~~~~lr~~~~~g~ 264 (483)
T PRK03640 193 HISGL-SILMRSVIYGMRVVLVEK----FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG---TYPSSFRCMLLGGG 264 (483)
T ss_pred HHHHH-HHHHHHHhcCCEEEecCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc---ccCCcceEEEEcCC
Confidence 98885 457889999999999864 48999999999999999999999999998654321 23468999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++++++.+. + +++++.||+||++...+...........+++|+|+++++++|+|+ +++++.|+.|||+|+|
T Consensus 265 ~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~-~~~~~~g~~Gel~v~g 339 (483)
T PRK03640 265 PAPKPLLEQCKEK-G---IPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKG 339 (483)
T ss_pred CCCHHHHHHHHHh-C---CCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecC-CCcCCCCCceEEEEEC
Confidence 9999999988774 4 889999999998764433222222345688999999999999986 4899999999999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVV 660 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv 660 (759)
|+++.||+++++.+...| .+|||+|||+++ +|.+|++.|||+++.++|.|.+++|+
T Consensus 340 --~~~~~gy~~~~~~~~~~~---~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~ 414 (483)
T PRK03640 340 --PNVTKGYLNREDATRETF---QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVV 414 (483)
T ss_pred --cchhhhhcCCHHHHHHHH---hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 899999999999888776 268999999988 89999999999999999999999999
Q ss_pred eEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+.+++..++.++++++...... .++++++++++|++|++|..|+++++||+|++||++|++|++.++.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 415 GVPDDKWGQVPVAFVVKSGEVT-----EEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred eCCCcccCCceEEEEEeCCCCC-----HHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 9988877888889888654332 5779999999999999999999999999999999999999998763
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=566.99 Aligned_cols=500 Identities=21% Similarity=0.278 Sum_probs=404.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+|+++|+++.+ .++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 17 ~l~~~l~~~~~-~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 91 (559)
T PRK08315 17 TIGQLLDRTAA-RYPDREALVYRD----QGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKI 91 (559)
T ss_pred cHHHHHHHHHH-HCCCCeEEEEcC----CCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 58899999998 899999999852 2578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhh---------cCCCccEEEEeccCc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK---------SGISVDVCLTYENQS 351 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~vi~~~~~~ 351 (759)
|++++|++|.++.+++..++++++++++|+++..... .....+.+....+.. .-+....++.++...
T Consensus 92 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 92 GAILVTINPAYRLSELEYALNQSGCKALIAADGFKDS----DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCCEEEEecccccc----chHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 9999999999999999999999999999998764211 111111111111100 001122333322211
Q ss_pred cccccccccCCCCccchhhhcCCC------CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC
Q 004348 352 AMTRENTKWQDGRDIWWQDVVPKY------PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (759)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (759)
......|.+..... ..........++++++|+|||||||.||||.++|++++ .........++
T Consensus 168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~-~~~~~~~~~~~ 236 (559)
T PRK08315 168 ----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNIL-NNGYFIGEAMK 236 (559)
T ss_pred ----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHH-HHHHHHHHhcC
Confidence 00112233322111 00111223457889999999999999999999999954 44555566789
Q ss_pred CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccccc
Q 004348 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (759)
Q Consensus 426 l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~ 505 (759)
++++|+++...|+.|..++.+.++.+|..|+++++.... +++..+++.++++++|++.++|+++..++.... ...
T Consensus 237 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~--~~~ 311 (559)
T PRK08315 237 LTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEG---FDPLATLAAVEEERCTALYGVPTMFIAELDHPD--FAR 311 (559)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCC---CCHHHHHHHHHHcCCeEEecchHHHHHHHhCcc--cCC
Confidence 999999999999999998888889999999999965432 489999999999999999999999988887643 233
Q ss_pred CCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC-CCCCCCCCcCCCCCCceEEEECCC-
Q 004348 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEK- 583 (759)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~~iG~p~~g~~~~IvD~~- 583 (759)
.++++||.+++||+++++++++++.+.++ ..++++.||+||++.+++..... ....+..++|+|++|+.++|+|++
T Consensus 312 ~~~~~lr~~~~~G~~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~ 389 (559)
T PRK08315 312 FDLSSLRTGIMAGSPCPIEVMKRVIDKMH--MSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPET 389 (559)
T ss_pred CCchhhheeEecCCCCCHHHHHHHHHHcC--CcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCcc
Confidence 46789999999999999999999999987 35699999999998755433221 112356789999999999999987
Q ss_pred CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHH
Q 004348 584 GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEV 644 (759)
Q Consensus 584 g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eI 644 (759)
+++++.|+.|||+|+| +++++|||++++.+...|. .++||+|||+++ +|+||+|.||
T Consensus 390 ~~~~~~g~~GEl~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eI 465 (559)
T PRK08315 390 GETVPRGEQGELCTRG--YSVMKGYWNDPEKTAEAID--ADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREI 465 (559)
T ss_pred CCcCCCCCceEEEEEC--chhhhhhcCChhHHhhcCC--CCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHH
Confidence 9999999999999999 8999999999988876653 378999999987 7999999999
Q ss_pred HHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccH
Q 004348 645 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724 (759)
Q Consensus 645 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR 724 (759)
|++|.++|+|.+++|++++++..++.+++||++.++...+ .++++++++++||.|++|..|+++++||+|++||++|
T Consensus 466 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r 542 (559)
T PRK08315 466 EEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLT---EEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQK 542 (559)
T ss_pred HHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCC---HHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeH
Confidence 9999999999999999998887788899999987654433 5789999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 004348 725 RILRKIASRQ 734 (759)
Q Consensus 725 ~~L~~~~~~~ 734 (759)
++|++++...
T Consensus 543 ~~L~~~~~~~ 552 (559)
T PRK08315 543 FKMREMMIEE 552 (559)
T ss_pred HHHHHHHHhh
Confidence 9999987754
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=560.58 Aligned_cols=478 Identities=24% Similarity=0.343 Sum_probs=395.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
.+.+++.+++ .+|+++|+.+.+ ++.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 4 ~l~~~~~~~~--~~~~~~a~~~~~-----~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~ 76 (504)
T PRK07514 4 NLFDALRAAF--ADRDAPFIETPD-----GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRA 76 (504)
T ss_pred cHHHHHHHHh--hCCCCeEEEeCC-----CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 4677777766 489999998742 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++..++++++++++|+++... ..+...... .....++.++...
T Consensus 77 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~--------- 133 (504)
T PRK07514 77 GAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANF---------AWLSKIAAA-----AGAPHVETLDADG--------- 133 (504)
T ss_pred CcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchh---------HHHHHhhhc-----cCCceEEEecCCC---------
Confidence 99999999999999999999999999999986532 111111111 1222233332211
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...+.+.....+.........++++++|+|||||||.||||+++|++++ .........+++.++|++++..|+.|
T Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~ 208 (504)
T PRK07514 134 ----TGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLL-SNALTLVDYWRFTPDDVLIHALPIFH 208 (504)
T ss_pred ----cccHHHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHH-HHHHHHHHHhCCCCccEEEEecchHH
Confidence 0011111111122222334568899999999999999999999999955 44555566788999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..++.+.++.+++.|+++++.+. .++..+++.+. ++|++..+|+++..++.... .....++++|.+++||++
T Consensus 209 ~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~ 280 (504)
T PRK07514 209 THGLFVATNVALLAGASMIFLPK----FDPDAVLALMP--RATVMMGVPTFYTRLLQEPR--LTREAAAHMRLFISGSAP 280 (504)
T ss_pred HHHHHHHHHHHHhcCcEEEECCC----CCHHHHHHHHH--hheeeecHHHHHHHHHcCCC--CCcccccceeeEEecCCC
Confidence 98877788899999999999854 38899999994 79999999999998887643 233467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceEEEEEec
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~GEL~I~g 599 (759)
++++++++|.+.++ .++++.||+||++...+.... .....+++|.|+++++++|+| +++++++.|+.|||+|+|
T Consensus 281 ~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~ 355 (504)
T PRK07514 281 LLAETHREFQERTG---HAILERYGMTETNMNTSNPYD--GERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG 355 (504)
T ss_pred CCHHHHHHHHHHhC---CcceeecccccccccccCCcc--ccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEec
Confidence 99999999999887 689999999999865443221 123457899999999999999 799999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVV 660 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv 660 (759)
++++.||+++++.+.+.|.. +|||+|||+++ +|+||+|.|||++|.++++|.+++|+
T Consensus 356 --~~~~~gy~~~~~~~~~~~~~--~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~ 431 (504)
T PRK07514 356 --PNVFKGYWRMPEKTAEEFRA--DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVI 431 (504)
T ss_pred --CCccccccCCchhhhhhccc--CCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEE
Confidence 89999999999988877643 68999999987 89999999999999999999999999
Q ss_pred eEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+++++..++.++++++..++...+ .++|+++++++|++|++|..|++++++|+|++||++|++|++.+.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 432 GVPHPDFGEGVTAVVVPKPGAALD---EAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred eCCCCCcCceEEEEEEECCCCCCC---HHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence 998887788999999987655433 5789999999999999999999999999999999999999998764
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=585.51 Aligned_cols=510 Identities=19% Similarity=0.241 Sum_probs=382.0
Q ss_pred ccHHHHHHhhcccccCCCeEEEEEE---cCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHH
Q 004348 199 TNICYNCLDRNIEAGLGDKVAIYWE---ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275 (759)
Q Consensus 199 ~n~~~~~l~~~~~~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~L 275 (759)
..+++++|+++++ ++|+++|+.+. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++|
T Consensus 42 ~~t~~~~l~~~~~-~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 120 (660)
T PLN02861 42 IDSPWQFFSDAVK-KYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120 (660)
T ss_pred CCCHHHHHHHHHH-hCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3478899999998 89999999753 1111334689999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccc
Q 004348 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (759)
Q Consensus 276 A~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (759)
||+++|++++||++.++.+++.++|++++++++|+++... ..+......+ ...++.++.++.......
T Consensus 121 A~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~---------~~~~~~~~~~---~~~l~~ii~~~~~~~~~~ 188 (660)
T PLN02861 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI---------SSILSCLPKC---SSNLKTIVSFGDVSSEQK 188 (660)
T ss_pred HHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH---------HHHHHhhhhC---CCCCEEEEEECCCChhhh
Confidence 9999999999999999999999999999999999865421 1121111111 124566666543210000
Q ss_pred cccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC-----CCCCc
Q 004348 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSD 430 (759)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~-----l~~~d 430 (759)
............|.+...............++|+++|+|||||||.||||++||++++.+ .......++ +.++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~-~~~~~~~~~~~~~~~~~~d 267 (660)
T PLN02861 189 EEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAE-VLSTDHLLKVTDRVATEED 267 (660)
T ss_pred hhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHH-HHHHHhccccccccCCCCC
Confidence 000000001133444433221111222356899999999999999999999999996544 333333333 46789
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcC-----------
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG----------- 499 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~----------- 499 (759)
++++++|++|.++..+. +.+|+.|+++++.. +++..+++.|+++++|+++++|+++..|.+..
T Consensus 268 ~~l~~lPl~H~~~~~~~-~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~ 341 (660)
T PLN02861 268 SYFSYLPLAHVYDQVIE-TYCISKGASIGFWQ-----GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLR 341 (660)
T ss_pred EEEEECcHHHHHHHHHH-HHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHH
Confidence 99999999999986654 45799999998873 37899999999999999999999999886410
Q ss_pred ------------------------CcccccC-------CC-CCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccc
Q 004348 500 ------------------------NEYVTRY-------SR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT 547 (759)
Q Consensus 500 ------------------------~~~~~~~-------~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~T 547 (759)
....... .+ .+||.+++||+++++++. +|.+.++ ...+++.||+|
T Consensus 342 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~--~~~l~~~YG~T 418 (660)
T PLN02861 342 KKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTS--CSVLSQGYGLT 418 (660)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHc--CCCeeEecchh
Confidence 0000000 12 589999999999999975 4666666 25799999999
Q ss_pred cccceecccCCCCCCCCCCCcCCCCCCceEEEEC--CCC-cccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCC
Q 004348 548 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD--EKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624 (759)
Q Consensus 548 E~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD--~~g-~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~ 624 (759)
|+++.++...... ..+.+++|+|+++++++|+| ++| ..++.+..|||+|+| |+++.|||++|+.|.+.|. +
T Consensus 419 E~~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrG--p~v~~GY~~~pe~T~~~f~---d 492 (660)
T PLN02861 419 ESCGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRG--NTLFSGYHKRQDLTEEVLI---D 492 (660)
T ss_pred hhhhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcC--CcccccccCCHHHHHhhhh---c
Confidence 9986554332221 23568999999999999997 344 344556689999999 8999999999999998872 7
Q ss_pred cEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCC----
Q 004348 625 GYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG---- 680 (759)
Q Consensus 625 g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~---- 680 (759)
|||+|||+|+ +|++|+|.|||++|.+||.|.+|+|++.+ .++.++|+|++...
T Consensus 493 Gw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~~~~l~~ 569 (660)
T PLN02861 493 GWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPDRQALED 569 (660)
T ss_pred cCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcCHHHHHH
Confidence 9999999998 69999999999999999999999999875 34679999998632
Q ss_pred ------CCCc-H------HHHHHHHHHHHh-----hcCCCccccEEEEeC-CC-----CCCCCCcccHHHHHHHHhcccC
Q 004348 681 ------VPYS-E------ELRKSLVLAVRK-----QIGAFAAPDKIHWAP-GL-----PKTRSGKIMRRILRKIASRQLD 736 (759)
Q Consensus 681 ------~~~~-~------~l~~~l~~~l~~-----~Lp~~~vP~~iv~v~-~l-----P~T~~GKvdR~~L~~~~~~~~~ 736 (759)
...+ . .....+.+.+.+ .|+.|..++.|.+++ .| .+|+++|+.|+.+.+.|..+++
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~ 649 (660)
T PLN02861 570 WAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCID 649 (660)
T ss_pred HHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHH
Confidence 0000 1 122334444433 489999999999966 46 7999999999999999998888
Q ss_pred CCCC
Q 004348 737 ELGD 740 (759)
Q Consensus 737 ~~~~ 740 (759)
++++
T Consensus 650 ~lY~ 653 (660)
T PLN02861 650 QLYS 653 (660)
T ss_pred HHHH
Confidence 7664
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=581.37 Aligned_cols=493 Identities=19% Similarity=0.172 Sum_probs=382.8
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcC---CCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~ 277 (759)
++.++|+++++ .+||++|+++.+. ..+..+.+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||
T Consensus 22 ~l~~~l~~~a~-~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~ 99 (631)
T PRK07769 22 NLVRHVERWAK-VRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGA 99 (631)
T ss_pred CHHHHHHHHHH-hCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHH
Confidence 57888999888 8999999997531 112246899999999999999999987 899999999999999999999999
Q ss_pred HHhCCeEEec-CCCCC--HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc
Q 004348 278 ARIGAVHSVV-FAGFS--SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (759)
Q Consensus 278 ~kaGav~vpl-dp~~~--~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (759)
+++|++++|+ ++..+ .+++.+++++++++++|+++... +.+........ ......++.++...
T Consensus 100 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--- 165 (631)
T PRK07769 100 LYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSA---------EGVRKFFRARP--AKERPRVIAVDAVP--- 165 (631)
T ss_pred HHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHH---------HHHHHHHhhcc--ccccceEEEccccc---
Confidence 9999999999 56665 68999999999999999976531 11222111110 00112233222110
Q ss_pred ccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEE
Q 004348 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434 (759)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~ 434 (759)
+... .........++++++|+|||||||+||||+++|++++.+ .......+++.++|++++
T Consensus 166 ---------------~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~ 226 (631)
T PRK07769 166 ---------------DEVG---ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTN-VLQVIDALEGQEGDRGVS 226 (631)
T ss_pred ---------------cccc---cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHH-HHHHHHHcCCCCcceEEE
Confidence 0000 001111346789999999999999999999999995544 444556688899999999
Q ss_pred ecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCC---cEEEehHHHHHHHHhc---CCcccccCCC
Q 004348 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV---TIFYTAPTLVRSLMRD---GNEYVTRYSR 508 (759)
Q Consensus 435 ~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~v---T~l~~~Ps~l~~l~~~---~~~~~~~~~l 508 (759)
.+|++|+.++. .++.+++.|+++++........++..+++.++++++ |++..+|+++..+... ........++
T Consensus 227 ~~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l 305 (631)
T PRK07769 227 WLPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDL 305 (631)
T ss_pred eCCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcch
Confidence 99999999964 456678889999987542222388899999999986 7899999987766543 1111113578
Q ss_pred CCeeEEEEeCCCCCHHHHHHHHHHhCC---CCccEeeeeccccccceecccCCCCC------------------------
Q 004348 509 KSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW------------------------ 561 (759)
Q Consensus 509 ~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~l~n~YG~TE~~~~~~~~~~~~~------------------------ 561 (759)
++||.+++||++++++++++|.+.++. +...++|.||+||++.+++.......
T Consensus 306 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 385 (631)
T PRK07769 306 SNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAP 385 (631)
T ss_pred hheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCC
Confidence 999999999999999999999998742 23469999999999865543211100
Q ss_pred -CCCCCCcCCCCCCceEEEEC-CCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc---------------cCC
Q 004348 562 -PQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------------PFP 624 (759)
Q Consensus 562 -~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~---------------~~~ 624 (759)
.....++|+|++++.++|+| ++++++|.|+.|||+|+| |+++.|||++++.+.+.|.. ..+
T Consensus 386 ~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~g--p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~ 463 (631)
T PRK07769 386 NAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHG--NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463 (631)
T ss_pred CceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecC--CCccccccCChhHHHHHHhhhcccccccccccCcccCC
Confidence 01124799999999999999 478999999999999999 89999999999999888753 124
Q ss_pred cEEEeCCeee------------------ccEeeCHHHHHHHHhc-CCccce--EEEEeEec-------------------
Q 004348 625 GYYFTGDGCS------------------SGHRIGTAEVESALVS-HPQCAE--AAVVGVEH------------------- 664 (759)
Q Consensus 625 g~y~TGDl~~------------------~G~rI~~~eIE~~L~~-~p~V~e--a~Vv~~~~------------------- 664 (759)
|||+|||+|+ +|+||+|.|||++|.+ ||.|.+ ++|+++++
T Consensus 464 gw~~TGDlg~~~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~ 543 (631)
T PRK07769 464 LWVRTGDYGVYFDGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDP 543 (631)
T ss_pred CeeeccccccEECCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEeccccccccccccccccccccc
Confidence 8999999987 8999999999999996 899998 99999988
Q ss_pred CCCCeEEEEEEEEcCCC-CCcHHHHHHHHHHHHhhcCC-Cc-cccEEEEeC--CCCCCCCCcccHHHHHHHHhcc
Q 004348 665 EVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGA-FA-APDKIHWAP--GLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 665 ~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~-~~-vP~~iv~v~--~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+..++.++++|+++++. ..+ .++|.++++++|+. |+ .|+.+++++ +||+|++|||+|++|++.+...
T Consensus 544 ~~~ge~~~a~v~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 615 (631)
T PRK07769 544 EDTSEQLVIVAERAPGAHKLD---PQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDG 615 (631)
T ss_pred CCCCccEEEEEEecCcccccc---HHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcC
Confidence 45788999999988753 222 57889999999985 56 488888887 6999999999999999987644
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=560.15 Aligned_cols=461 Identities=21% Similarity=0.264 Sum_probs=383.0
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.+.|+++++ ++||++|+++. ++.+||.||.++++++|++|.+.|. +|++|+|+++|++++++++|||+++|
T Consensus 3 ~~~~~~~~a~-~~p~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G 74 (487)
T PRK07638 3 ITKEYKKHAS-LQPNKIAIKEN------DRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAG 74 (487)
T ss_pred hHHHHHHHHH-hCCCCeEEecC------CcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 5677888888 89999999976 6789999999999999999999985 89999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (759)
++++|+++.++.+++.++++.++++++|+++..... +. . .. ..++.++.
T Consensus 75 ~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~---------~~----~-----~~-~~~~~~~~------------ 123 (487)
T PRK07638 75 WTCVPLDIKWKQDELKERLAISNADMIVTERYKLND---------LP----D-----EE-GRVIEIDE------------ 123 (487)
T ss_pred eEEEecCccCCHHHHHHHHHhCCCCEEEEecccccc---------hh----h-----cc-ceEEEehh------------
Confidence 999999999999999999999999999998753211 00 0 00 11222211
Q ss_pred CCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchh
Q 004348 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (759)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~ 441 (759)
|.+................+++++|+|||||||.||||+++|++++.+ .......+++.++|+++...++.|.
T Consensus 124 ------~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~-~~~~~~~~~~~~~d~~~~~~~l~~~ 196 (487)
T PRK07638 124 ------WKRMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHS-FDCNVHDFHMKREDSVLIAGTLVHS 196 (487)
T ss_pred ------hhhhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHH-HHHHHHhcCcCCCCEEEEeecchHH
Confidence 111111111111111223567899999999999999999999996544 4455566889999999999999998
Q ss_pred chhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCC
Q 004348 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (759)
Q Consensus 442 ~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (759)
.+ .+.++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|.+... ...+.+.++++|+++
T Consensus 197 ~~-l~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------~~~~~~~~~~~G~~l 265 (487)
T PRK07638 197 LF-LYGAISTLYVGQTVHLMRK----FIPNQVLDKLETENISVMYTVPTMLESLYKENR------VIENKMKIISSGAKW 265 (487)
T ss_pred HH-HHHHHHHHccCcEEEEcCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC------cCCceeEEEEcCCCC
Confidence 76 4678899999999998754 489999999999999999999999999987632 234566678899999
Q ss_pred CHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCC
Q 004348 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (759)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~ 601 (759)
++++.+++.+.++ ++++++.||+||++.+..... .....+.+++|+|++|+.++|+|++|++++.|+.|||+|+|
T Consensus 266 ~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~-- 340 (487)
T PRK07638 266 EAEAKEKIKNIFP--YAKLYEFYGASELSFVTALVD-EESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKS-- 340 (487)
T ss_pred CHHHHHHHHHHcC--CCeEEEEecCCccCceEEecc-cccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEec--
Confidence 9999999999986 588999999999987654332 22234667899999999999999999999999999999999
Q ss_pred CcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeE
Q 004348 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGV 662 (759)
Q Consensus 602 ~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~ 662 (759)
+.++.||+++++.+... + .+|||+|||+++ +|++|+|.|||++|.+||+|.+|+|++.
T Consensus 341 ~~~~~gy~~~~~~~~~~-~--~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~ 417 (487)
T PRK07638 341 PQFFMGYIIGGVLAREL-N--ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGV 417 (487)
T ss_pred ccceeeecCCHHHHhhh-c--cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEec
Confidence 88999999999876553 2 378999999987 8999999999999999999999999999
Q ss_pred ecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 663 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 663 ~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+++..++.++++|+.. .. .++|+++++++|++|++|..|+++++||+|++||++|++|++++...
T Consensus 418 ~~~~~g~~~~~~v~~~----~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 418 PDSYWGEKPVAIIKGS----AT---KQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred CchhcCCeeEEEEECC----CC---HHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcc
Confidence 9888888899988742 12 57899999999999999999999999999999999999999987654
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=569.97 Aligned_cols=504 Identities=18% Similarity=0.223 Sum_probs=399.5
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|++++. .+|++.|+++.++ ..+.+||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||++
T Consensus 11 ~~~~~l~~~a~-~~~~~~a~~~~~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~ 86 (576)
T PRK05620 11 SLTRILEYGST-VHGDTTVTTWGGA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC 86 (576)
T ss_pred cHHHHHHHHHH-hCCCceEEEEcCC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 47889999988 8999999998632 26899999999999999999986 8999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++.+++.+++++++++++|+++.. .+.+.+....+ +..+.++.++...... ....
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~---------~~~~~~~~~~~----~~~~~i~~~~~~~~~~-~~~~ 152 (576)
T PRK05620 87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRL---------AEQLGEILKEC----PCVRAVVFIGPSDADS-AAAH 152 (576)
T ss_pred cCCEEeecccccCHHHHHHHHhccCCcEEEEChhh---------HHHHHHHHhhC----ccccEEEEecCccccc-chhc
Confidence 99999999999999999999999999999997653 22333333333 3444455443221000 0000
Q ss_pred c-CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHH-HHHHHhCCCCCcEEEEecC
Q 004348 360 W-QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT-TFKYAFDYKPSDVYWCTAD 437 (759)
Q Consensus 360 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~-~~~~~~~l~~~d~~l~~~~ 437 (759)
. ......+|.++........+.....++++++|+|||||||.||||+++|+++...... .....+++.+++++++.+|
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p 232 (576)
T PRK05620 153 MPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVP 232 (576)
T ss_pred cccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCC
Confidence 0 0112234666554333222233456789999999999999999999999995443222 1223478889999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
+.|+.++ ..++.++..|+++++.... +++..+++.|+++++|++..+|+++..|+..... ...+..+||.+++|
T Consensus 233 l~h~~g~-~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~g 306 (576)
T PRK05620 233 IYHVLSW-GVPLAAFMSGTPLVFPGPD---LSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLK--NPPERMSLQEIYVG 306 (576)
T ss_pred hHHhhhh-HHHHHHHhcCceEEecCCC---CCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhc--cCcccCceeEEEEc
Confidence 9999985 5678899999999887532 4889999999999999999999999888764321 11234689999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC--C----CCCCCCcCCCCCCceEEEECCCCcccC--C
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--W----PQKPGSATFPFFGVQPVIVDEKGVEIE--G 589 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~--~----~~~~~~iG~p~~g~~~~IvD~~g~~vp--~ 589 (759)
|++++++++++|.+.++ +++++.||+||++...+...+.. . .....++|++.++++++|+|+ +++++ .
T Consensus 307 G~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~ 382 (576)
T PRK05620 307 GSAVPPILIKAWEERYG---VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTD 382 (576)
T ss_pred CCCCCHHHHHHHHHHhC---CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCC
Confidence 99999999999999887 78999999999987544322111 0 012347899999999999997 77765 4
Q ss_pred CceEEEEEecCCCcccccccCChhhH----Hhhhcc----------cCCcEEEeCCeee-------------------cc
Q 004348 590 ECSGYLCIKSSWPGAFRTLYGDHERY----ETTYFK----------PFPGYYFTGDGCS-------------------SG 636 (759)
Q Consensus 590 g~~GEL~I~g~~~~v~~GY~~~~e~~----~~~~~~----------~~~g~y~TGDl~~-------------------~G 636 (759)
+..|||+|+| +.++.|||++++.+ ...|.. ..+|||+|||+++ +|
T Consensus 383 ~~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G 460 (576)
T PRK05620 383 RNEGEIQVRG--NWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGG 460 (576)
T ss_pred CCceEEEEEc--CcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCC
Confidence 6889999999 88999999999766 222210 1368999999988 89
Q ss_pred EeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCC
Q 004348 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716 (759)
Q Consensus 637 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~ 716 (759)
++|+|.|||++|.+||.|.+|+|++.+++..++.+++++++.++...++...++|+++|+++||+|++|+.|+++++||+
T Consensus 461 ~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~ 540 (576)
T PRK05620 461 EWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDK 540 (576)
T ss_pred EEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCC
Confidence 99999999999999999999999999998888899999998876543333368899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHhcc
Q 004348 717 TRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 717 T~~GKvdR~~L~~~~~~~ 734 (759)
|.+||++|++|++++...
T Consensus 541 t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 541 TSVGKFDKKDLRQHLADG 558 (576)
T ss_pred CCcccCcHHHHHHHHhcC
Confidence 999999999999998843
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=560.43 Aligned_cols=486 Identities=28% Similarity=0.403 Sum_probs=402.3
Q ss_pred cccHHHHHHhhc-ccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 198 ITNICYNCLDRN-IEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 198 ~~n~~~~~l~~~-~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
.+|.+.++++++ ++ .+||++|++.. .+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~~~~~~-~~p~~~a~~~~------~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a 74 (508)
T TIGR02262 2 KYNAAEDLLDRNVVE-GRGGKTAFIDD------ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG 74 (508)
T ss_pred cchHHHHHHHHHHhc-ccCCceEEEeC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 357899999987 45 79999999865 67899999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|+++|++++|+++.++.+++.++++.++++++|+++... ..+.+....+ +....++..+...
T Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~----- 136 (508)
T TIGR02262 75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL---------PVIKAALGKS----PHLEHRVVVGRPE----- 136 (508)
T ss_pred HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH---------HHHHHHHhcC----CCccEEEEeCCCC-----
Confidence 999999999999999999999999999999999976532 2222222222 3444444433211
Q ss_pred ccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEec
Q 004348 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~ 436 (759)
.....+.+...............++++++|+|||||||.||||+++|+++...........++++++|+++...
T Consensus 137 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 210 (508)
T TIGR02262 137 ------AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAA 210 (508)
T ss_pred ------cccccHHHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcC
Confidence 01122333332222222223456789999999999999999999999996554433245567899999999999
Q ss_pred CcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEE
Q 004348 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (759)
Q Consensus 437 ~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (759)
|++|+.++...++.++..|+++++.++. +++..+++.|+++++|++.++|+++..++.... .......++|.+++
T Consensus 211 p~~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~--~~~~~~~~l~~~~~ 285 (508)
T TIGR02262 211 KLFFAYGLGNALTFPMSVGATTVLMGER---PTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN--LPAEDQVRLRLCTS 285 (508)
T ss_pred chHHHHHHHHHHHHHHHcCceEEEeCCC---CCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc--ccccccccceeEEE
Confidence 9999988777788899999999998653 488999999999999999999999988876532 12234678999999
Q ss_pred eCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEE
Q 004348 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (759)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~ 596 (759)
||+++++++++.|.+.++ +++++.||+||++...+..... ..+.+++|+|++|+.++|+|+++++++.|+.|||+
T Consensus 286 ~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~ 360 (508)
T TIGR02262 286 AGEALPAEVGQRWQARFG---VDIVDGIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELL 360 (508)
T ss_pred cCCCCCHHHHHHHHHHhC---CchhhCccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEE
Confidence 999999999999999987 7899999999998755433221 23457899999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceE
Q 004348 597 IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEA 657 (759)
Q Consensus 597 I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea 657 (759)
|+| ++++.||+++++.+...| .++||+|||+++ +|.+|+|.|||++|.+||+|.++
T Consensus 361 i~~--~~~~~gY~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~ 435 (508)
T TIGR02262 361 ISG--PSSATMYWNNRAKTRDTF---QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEA 435 (508)
T ss_pred Eec--CccccccCCCHHHhHhhh---hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEE
Confidence 999 899999999999887765 268999999886 79999999999999999999999
Q ss_pred EEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 658 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 658 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
++++.++....+.+++|++..++....+.+.++|+++++++|++|++|..+++++++|+|++||++|++|++
T Consensus 436 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 436 AVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred EEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence 999988877778899999987665433344688999999999999999999999999999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=560.97 Aligned_cols=473 Identities=23% Similarity=0.325 Sum_probs=378.7
Q ss_pred hcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEec
Q 004348 208 RNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287 (759)
Q Consensus 208 ~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpl 287 (759)
.+++ .+|+++|+++.+ .++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 5 ~~a~-~~p~~~a~~~~~----~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 5 THAQ-IAPDRPAVIVAE----TGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhh-hCCCCcEEEecC----CCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 4555 799999998752 25789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccc
Q 004348 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIW 367 (759)
Q Consensus 288 dp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 367 (759)
++.++.+++.+++++++++++++++... ...... . ......+.+.... .....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~-~------~~~~~~~~~~~~~-----------~~~~~ 132 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALD---------GLAAKV-G------ADLPLRLSFGGEI-----------DGFGS 132 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhh---------hHHHHh-h------hccceEEEecCcc-----------ccccc
Confidence 9999999999999999999999876421 111110 0 0111112111100 00111
Q ss_pred hhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEE--ccchHHHH---HHHHHHHHhCCCCCcEEEEecCcchhc
Q 004348 368 WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH--TTGGYMVH---TATTFKYAFDYKPSDVYWCTADCGWIT 442 (759)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~--th~~~l~~---~~~~~~~~~~l~~~d~~l~~~~l~~~~ 442 (759)
+++...... +. .....++++|+|||||||.||||++ +|.++..+ ........+++..+|+++..+|++|..
T Consensus 133 ~~~~~~~~~---~~-~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~ 208 (501)
T PRK13390 133 FEAALAGAG---PR-LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAA 208 (501)
T ss_pred HHHHhcccC---CC-CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhh
Confidence 222211111 00 1122357999999999999999995 55553221 112223457889999999999999988
Q ss_pred hhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCC
Q 004348 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522 (759)
Q Consensus 443 g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~ 522 (759)
++.+. +..+..|+++++.+. +++..+++.|+++++|++.++|+++..|++.........+++++|.+++||++++
T Consensus 209 ~~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~ 283 (501)
T PRK13390 209 PLRWC-SMVHALGGTVVLAKR----FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCP 283 (501)
T ss_pred HHHHH-HHHHhcCceEEEcCC----cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCC
Confidence 76443 445778999988753 4899999999999999999999999998875433223456789999999999999
Q ss_pred HHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCC
Q 004348 523 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602 (759)
Q Consensus 523 ~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~ 602 (759)
+++.+.+.+.++ .++++.||+||+++++..... ......+++|+|++| .++|+|+++++++.|+.|||+|+| +
T Consensus 284 ~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~--~ 356 (501)
T PRK13390 284 VDVKHAMIDWLG---PIVYEYYSSTEAHGMTFIDSP-DWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFER--D 356 (501)
T ss_pred HHHHHHHHHhcC---CceeeeecccccCceEEecch-hhccCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEec--C
Confidence 999999999886 679999999999865443221 112356789999999 799999999999999999999999 8
Q ss_pred cccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEe
Q 004348 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663 (759)
Q Consensus 603 ~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 663 (759)
+++.||+++++.+.+.+....++||+|||+|+ +|+||+|.|||++|.+||.|.+++|++++
T Consensus 357 ~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~ 436 (501)
T PRK13390 357 RLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVP 436 (501)
T ss_pred CccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEecc
Confidence 99999999999998887665578999999988 89999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 664 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
++..++.++++|++.++...++++.++|+++++++||.||+|..++++++||+|++||++|++|+
T Consensus 437 ~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 437 DPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred CcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 98888999999998876544445567899999999999999999999999999999999999984
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-62 Score=564.97 Aligned_cols=483 Identities=20% Similarity=0.286 Sum_probs=392.8
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
+++.++|.++++ .+|+++|+++.. .++.+||+||.++++++|+.|++.|+++||+|+++++|++++++++|||++
T Consensus 28 ~~~~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 102 (546)
T PLN02330 28 LTLPDFVLQDAE-LYADKVAFVEAV----TGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMA 102 (546)
T ss_pred CcHHHHHhhhhh-cCCCccEEEecC----CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence 357888998988 899999998642 247899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|+++.++.+++.+++++++++++|+++..... ++.+ ... ++.++...
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~-----~~~-~i~~~~~~-------- 155 (546)
T PLN02330 103 AGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGK-------------VKGL-----GLP-VIVLGEEK-------- 155 (546)
T ss_pred hCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhh-------------Hhhc-----CCc-EEEecCCC--------
Confidence 99999999999999999999999999999998764311 1111 111 23332211
Q ss_pred cCCCCccchhhhcCCCCC---CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCC----CCcEE
Q 004348 360 WQDGRDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK----PSDVY 432 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~----~~d~~ 432 (759)
......|.+.+..... ..+.....++++++|+|||||||.||||+++|++++.+... ..+++. ..+++
T Consensus 156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~---~~~~~~~~~~~~~~~ 230 (546)
T PLN02330 156 --IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCS---SLFSVGPEMIGQVVT 230 (546)
T ss_pred --CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHH---HhhccCccccCceEE
Confidence 0012334444432211 11223345789999999999999999999999996544322 223333 34678
Q ss_pred EEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCC--C
Q 004348 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK--S 510 (759)
Q Consensus 433 l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~--s 510 (759)
+...|++|..++...++.+|..|+++++.+. +++..+++.++++++|++.++|+++..|++... ....++. +
T Consensus 231 ~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~~~~ 304 (546)
T PLN02330 231 LGLIPFFHIYGITGICCATLRNKGKVVVMSR----FELRTFLNALITQEVSFAPIVPPIILNLVKNPI--VEEFDLSKLK 304 (546)
T ss_pred EEecChHHHHHHHHHHHHHhhcCCEEEEecc----cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc--ccccccchhe
Confidence 8899999988876678889999999998754 489999999999999999999999999987543 1222333 5
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccC-CC--CCCCCCCCcCCCCCCceEEEEC-CCCcc
Q 004348 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PG--AWPQKPGSATFPFFGVQPVIVD-EKGVE 586 (759)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~-~~--~~~~~~~~iG~p~~g~~~~IvD-~~g~~ 586 (759)
+|.+++||++++++++++|.+.++ ++++++.||+||++.+.+... +. ....+..++|+|++|++++|+| +++++
T Consensus 305 l~~i~~~g~~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~ 382 (546)
T PLN02330 305 LQAIMTAAAPLAPELLTAFEAKFP--GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRS 382 (546)
T ss_pred eeeEEEcCCcCCHHHHHHHHHHcC--CCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCcc
Confidence 799999999999999999999985 489999999999986543221 11 1112446899999999999999 57899
Q ss_pred cCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHH
Q 004348 587 IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESA 647 (759)
Q Consensus 587 vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~ 647 (759)
+|.|+.|||+|+| +.++.||+++++.+.+.+. .+|||+|||+|+ +|+||+|.|||++
T Consensus 383 ~p~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~ 458 (546)
T PLN02330 383 LPKNTPGELCVRS--QCVMQGYYNNKEETDRTID--EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI 458 (546)
T ss_pred CCCCCceEEEEec--chhhhhhccCccchhhhcc--CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHH
Confidence 9999999999999 8999999999988877653 478999999988 8999999999999
Q ss_pred HhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHH
Q 004348 648 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727 (759)
Q Consensus 648 L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L 727 (759)
|.+||.|.+++|++++++..++.++++|++.++...+ .++|+++++++|+.|++|+.|+++++||+|++||++|++|
T Consensus 459 l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L 535 (546)
T PLN02330 459 LLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKES---EEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLL 535 (546)
T ss_pred HHhCCchheEEEEeccccccCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHH
Confidence 9999999999999999888889999999987654433 5679999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 004348 728 RKIASRQ 734 (759)
Q Consensus 728 ~~~~~~~ 734 (759)
++++...
T Consensus 536 ~~~~~~~ 542 (546)
T PLN02330 536 KEKMLSI 542 (546)
T ss_pred HHHHHhh
Confidence 9998654
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=505.63 Aligned_cols=488 Identities=22% Similarity=0.308 Sum_probs=412.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.+.|.++++ ++||++|+++. ++.|||+||+++++++|..|+++|+++||+|.+.+||..|+++++||.+|+
T Consensus 29 ~l~d~L~~~A~-~~pdriAv~d~------~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrl 101 (542)
T COG1021 29 TLTDILTDHAA-RYPDRIAVIDG------ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRL 101 (542)
T ss_pred cHHHHHHHHHh-hcCCceEEecC------cccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHc
Confidence 56788999998 89999999977 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|+++|.--|+....+|.+..+.+.|+.+|.+.... -.+..+...+.+... +.++++++.++....
T Consensus 102 Gv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~----gFd~~~~ar~~~a~~----~tlr~v~v~ge~~~~------- 166 (542)
T COG1021 102 GVAPVLALPSHRASELGAFASQIEAALLIVARQHS----GFDYRPFARELVAKH----PTLRHVIVAGEAEHP------- 166 (542)
T ss_pred CcchhhccchhhHHHHHHHHHhhcchheeechhhc----ccCcHHHHHHHHhhC----CcceEEEEccCCCCc-------
Confidence 99999988999999999999999999999876532 123344444444443 778888876543210
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...|...........+..+.+++++||..-+.||||.||-|..||..|..+ .......++++..+++++..|..|
T Consensus 167 ----~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ys-v~aSaEiC~~~~~tvyL~~LP~AH 241 (542)
T COG1021 167 ----SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYS-VRASAEICGFDQQTVYLCALPAAH 241 (542)
T ss_pred ----chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeee-eeehhhhhCcCccceEEEeccccc
Confidence 011222222223334455678889999999999999999999999997654 444556789999999999999998
Q ss_pred hchhh-HHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHS-YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~-~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
.+-++ -.+++.+..|+++|+.+. ++|+..+.+|++|+||+..++|.+...+++..+. ...+++|||.+-+||.
T Consensus 242 NfplssPG~LGv~~agG~VVla~~----psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~--~~~~LsSLrllQVGGa 315 (542)
T COG1021 242 NFPLSSPGALGVFLAGGTVVLAPD----PSPELCFPLIERHGVTVTALVPPLASLWLQAAEW--ERADLSSLRLLQVGGA 315 (542)
T ss_pred CCCCCCcchhheeeeccEEEECCC----CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc--ccCCchheeEEeecCc
Confidence 86432 267889999999999865 4899999999999999999999999999988653 5678999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCC-CceEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~-g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
.+++++.+++...+| |.+-+.+||.|--...+ ...+..+.-..+-|+|+. .-+++|+|++|++|++|+.|+|..+
T Consensus 316 rl~~~~Arrv~~~lg---C~LQQVFGMAEGLvnyT-RLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltR 391 (542)
T COG1021 316 RLSATLARRVPAVLG---CQLQQVFGMAEGLVNYT-RLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTR 391 (542)
T ss_pred ccCHHHHhhchhhhC---chHHHHhhhhhhhhccc-ccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeec
Confidence 999999999999998 89999999999643322 222222233456799985 5689999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| |...+|||+-|+.+...|.. +|+|+|||+++ +|++|-..|||+.|+.||.|.+|++
T Consensus 392 G--PYTirGYyrap~HNa~aF~a--~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAl 467 (542)
T COG1021 392 G--PYTIRGYYRAPEHNARAFDA--DGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAAL 467 (542)
T ss_pred C--CeeeeeeccCchhhhhccCc--CCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhh
Confidence 9 89999999999998888865 89999999988 7999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
|..+|+..|++.+|||++++.... ..+|+++|+++ |..|++|++|.+++.||+|+-||||+++|++.+..
T Consensus 468 VampDelLGEksCAfiv~~~~~~~----~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 468 VAMPDELLGEKSCAFIVVKEPPLR----AAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred hcCchhhcCcceeEEEEecCCCCC----HHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhh
Confidence 999999999999999999877532 57888888777 99999999999999999999999999999987754
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-62 Score=562.08 Aligned_cols=492 Identities=20% Similarity=0.250 Sum_probs=394.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+.++. .+|+++++.+..+ +..+.+||.||+++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~~~~~l~~~~~-~~~~~~~~~~~~~--~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~ 87 (539)
T PRK07008 11 LISSLIAHAAR-HAGDTEIVSRRVE--GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87 (539)
T ss_pred CHHHHHHHHHh-hCCCceEEEeecc--CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 57888998887 7899888875321 22468999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++++++... +.+.+....+ ..+..++.+.+.... ..
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~ 149 (539)
T PRK07008 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFL---------PLVDALAPQC----PNVKGWVAMTDAAHL-----PA 149 (539)
T ss_pred CcEEeecccccCHHHHHHHHhccCCcEEEEcchhH---------HHHHHHHhhC----CCceEEEEEccCCcc-----cc
Confidence 99999999999999999999999999999876532 2233322222 344444444332110 00
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHH-HHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~-~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.....++|+++..............++++++|+|||||||.||||+++|++++.+.. ......+++.++|++++..|++
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 229 (539)
T PRK07008 150 GSTPLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMF 229 (539)
T ss_pred CCcccccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchH
Confidence 011134455544332222222345678899999999999999999999999654322 2223457888999999999998
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++ ..++.++..|+++++.+.. +++..++++++++++|++.++|+++..|++.... ...++++||.++++|+
T Consensus 230 h~~~~-~~~~~~l~~G~~~~~~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~~G~ 303 (539)
T PRK07008 230 HVNAW-GLPYSAPLTGAKLVLPGPD---LDGKSLYELIEAERVTFSAGVPTVWLGLLNHMRE--AGLRFSTLRRTVIGGS 303 (539)
T ss_pred HhhhH-HHHHHHHhcCceEEEecCC---cCHHHHHHHHHHcCCEEEEechHHHHHHHhcccc--cCCCcccceEEEEcCC
Confidence 87764 3457789999999987532 4899999999999999999999999999876542 2346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC-----C----CCCCCCcCCCCCCceEEEECCCCcccCCC
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-----W----PQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~-----~----~~~~~~iG~p~~g~~~~IvD~~g~~vp~g 590 (759)
+++++++++|.+.++ +++++.||+||++...+...... . .....++|+|++|+.++|+|+++++++.+
T Consensus 304 ~l~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~ 380 (539)
T PRK07008 304 ACPPAMIRTFEDEYG---VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWD 380 (539)
T ss_pred CCCHHHHHHHHHHhC---CceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCC
Confidence 999999999999887 78999999999986543221110 0 01235789999999999999999988853
Q ss_pred --ceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 591 --CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 591 --~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
+.|||+++| +.++.||+++++. . +. +|||+|||+++ +|++|+|.|||++|.
T Consensus 381 ~~~~Gei~v~g--~~~~~gy~~~~~~---~-~~--~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 452 (539)
T PRK07008 381 GKAFGDLQVRG--PWVIDRYFRGDAS---P-LV--DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV 452 (539)
T ss_pred CCcceEEEEeC--CccchhhcCChhh---h-hc--CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH
Confidence 579999999 8899999999832 2 22 68999999988 899999999999999
Q ss_pred cCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 650 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
+||.|.+++|+++++...++.++++|+..++...+ .++|+++++++|++|++|+.|+++++||+|++||++|++|++
T Consensus 453 ~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~ 529 (539)
T PRK07008 453 AHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVT---REELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLRE 529 (539)
T ss_pred hCCceeEEEEEecCCchhccceEEEEEeCCCCccC---HHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHH
Confidence 99999999999999887788899999887654433 578999999999999999999999999999999999999999
Q ss_pred HHhc
Q 004348 730 IASR 733 (759)
Q Consensus 730 ~~~~ 733 (759)
.+.+
T Consensus 530 ~~~~ 533 (539)
T PRK07008 530 QFRD 533 (539)
T ss_pred HHHh
Confidence 8875
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=557.66 Aligned_cols=490 Identities=22% Similarity=0.309 Sum_probs=397.7
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++++++|+++++ ++||++|+++.+.+ +..+.+||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 7 ~~l~~~~~~~a~-~~p~~~a~~~~~~~-~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~ 84 (517)
T PRK08008 7 QHLRQMWDDLAD-VYGHKTALIFESSG-GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK 84 (517)
T ss_pred ccHHHHHHHHHH-HCCCceEEEcccCC-CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 368899999998 89999999986432 3357899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++.+++.+++++++++++|+++... +.+.+..... ...++.++.......
T Consensus 85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~------- 145 (517)
T PRK08008 85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFY---------PMYRQIQQED---ATPLRHICLTRVALP------- 145 (517)
T ss_pred cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchh---------HHHHHHHhhc---cccCcEEEEecCCCc-------
Confidence 999999999999999999999999999999987532 2233222221 133444544432210
Q ss_pred cCCCCccchhhhcCCCCC-CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCc
Q 004348 360 WQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l 438 (759)
.......+.+....... ........++++++|+|||||||.||||+++|++++.. .........+.+++++++.+|+
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~ 223 (517)
T PRK08008 146 -ADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFA-GYYSAWQCALRDDDVYLTVMPA 223 (517)
T ss_pred -ccccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHH-HHHHhhhcCCCCCCeEEEecCc
Confidence 00011223333222111 11122345789999999999999999999999996533 2223334567889999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
.|..++...++.++..|+++++.+. +++..+++.|+++++|++.++|++++.++...... .....++|.+.++
T Consensus 224 ~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~~~~l~~~~~~- 296 (517)
T PRK08008 224 FHIDCQCTAAMAAFSAGATFVLLEK----YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA--NDRQHCLREVMFY- 296 (517)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEccc----cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc--ccccccceeeEEe-
Confidence 9987777788999999999999864 48899999999999999999999999988664321 1234678887775
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEe
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
.+++++.+.+|.+.++ +++++.||+||++..++...... .....++|+|+++++++|+|+++++++.|+.|||+|+
T Consensus 297 ~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~ 372 (517)
T PRK08008 297 LNLSDQEKDAFEERFG---VRLLTSYGMTETIVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIK 372 (517)
T ss_pred cCCCHHHHHHHHHHhC---CeEEeeccccccccccccCCccc-cccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEe
Confidence 5899999999999887 78999999999987655443322 3455789999999999999999999999999999999
Q ss_pred cC-CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEE
Q 004348 599 SS-WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAA 658 (759)
Q Consensus 599 g~-~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~ 658 (759)
|+ .+++++|||++++.+.+.|. .+|||+|||+|+ +|++|+|.|||++|.+||.|.+++
T Consensus 373 g~~~~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~ 450 (517)
T PRK08008 373 GVPGKTIFKEYYLDPKATAKVLE--ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIV 450 (517)
T ss_pred CCCCcchhhhHhCChHHHhhccc--CCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEE
Confidence 83 25899999999999887764 378999999987 799999999999999999999999
Q ss_pred EEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 659 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
|++++++..++.+.++|+++++...+ .++|++++++++++|++|..+++++++|+|++||++|+.|+
T Consensus 451 v~g~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 451 VVGIKDSIRDEAIKAFVVLNEGETLS---EEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EEccCCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 99999888888999999998765443 57899999999999999999999999999999999999874
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=556.46 Aligned_cols=485 Identities=23% Similarity=0.289 Sum_probs=398.1
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
++++|+++++ .+|+++|+.+. .+.+||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 2 ~~~~~~~~~~-~~p~~~a~~~~------~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 2 LHHLLEDAAA-RLPDATALVHH------DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred HHHHHHHHHH-HCCCCeEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 5678888888 89999999976 5789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (759)
++++|+++.++.+++..++++++++++|+++... ..+......+ +.+..++.++.... ....
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~ 136 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERL---------DLLHPALPGC----HDLRTLILVGEPAH-----ASEG 136 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchh---------hhhHhhhhcc----cccceEEEecCccc-----ccCC
Confidence 9999999999999999999999999999976532 1111222221 33444554443221 0001
Q ss_pred CCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchh
Q 004348 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (759)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~ 441 (759)
......|++....... .+......+++++|+|||||||.||||+++|++++.+ .......+++.++|++++..|++|+
T Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~~~ 214 (515)
T TIGR03098 137 GGESPSWPKLLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAG-AQSVATYLENRPDDRLLAVLPLSFD 214 (515)
T ss_pred ccccccHHHhhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHH-HHHHHHHhCCCcccEEEEECchhhH
Confidence 1123345554433221 1223345688999999999999999999999996544 4445566788999999999999999
Q ss_pred chhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCC
Q 004348 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (759)
Q Consensus 442 ~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (759)
.++ ..++.+|..|+++++.+. .+++.+++.++++++|++.++|+++..|.+... ...+++++|.+++||+++
T Consensus 215 ~~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~l~~~~~~g~~l 286 (515)
T TIGR03098 215 YGF-NQLTTAFYVGATVVLHDY----LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW---PESAAPSLRYLTNSGGAM 286 (515)
T ss_pred hHH-HHHHHHHHcCCEEEEcCC----CCHHHHHHHHHHcCCceEecChHHHHHHHhccc---CCCCccceEEEEecCCcC
Confidence 885 568899999999998754 489999999999999999999999999987532 123678999999999999
Q ss_pred CHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCC
Q 004348 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (759)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~ 601 (759)
++++++++.+.++ ++.+++.||+||++....... .....+++++|+|++|+.++|+|+++++++.|+.|||+++|
T Consensus 287 ~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g-- 361 (515)
T TIGR03098 287 PRATLSRLRSFLP--NARLFLMYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRG-- 361 (515)
T ss_pred CHHHHHHHHHHCC--CCeEeeeeccccccceEeccc-ccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcC--
Confidence 9999999999886 478999999999976443221 11234678999999999999999999999999999999999
Q ss_pred CcccccccCChhhHHhhhccc---------CCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 602 PGAFRTLYGDHERYETTYFKP---------FPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 602 ~~v~~GY~~~~e~~~~~~~~~---------~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
+.++.|||++++.+...|... .++||+|||+|+ +|.+|+|.|||++|.+||.
T Consensus 362 ~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~ 441 (515)
T TIGR03098 362 ALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGL 441 (515)
T ss_pred chhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCC
Confidence 889999999998877665321 134899999987 7999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
|.+|+|++++++..++.++++++..++...+ .++|+++++++|+++++|..++++++||+|.+||++|++|++
T Consensus 442 v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 442 VAEAVAFGVPDPTLGQAIVLVVTPPGGEELD---RAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred eeEEEEEeccCcccCceEEEEEEeCCCCCCC---HHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 9999999999988889999999876554433 578999999999999999999999999999999999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=560.72 Aligned_cols=487 Identities=23% Similarity=0.272 Sum_probs=398.8
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.+.+++++. .+|+++|+.+. ++.+||.||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|
T Consensus 19 ~~~~~~~~a~-~~~~~~a~~~~------~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G 91 (542)
T PRK07786 19 WVNQLARHAL-MQPDAPALRFL------GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLG 91 (542)
T ss_pred HHHHHHHHHH-HCCCCeEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5566788888 89999999977 6789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (759)
++++|+++.++.+++..++++++++++++++... ..+..... ..+.++.++...+...
T Consensus 92 ~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~--------- 149 (542)
T PRK07786 92 AIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA---------PVATAVRD----IVPLLSTVVVAGGSSD--------- 149 (542)
T ss_pred eEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH---------HHHHHhhh----ccCccceEEEecCCCc---------
Confidence 9999999999999999999999999999976532 11111111 1134455554432110
Q ss_pred CCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCC-CCCcEEEEecCcch
Q 004348 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY-KPSDVYWCTADCGW 440 (759)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l-~~~d~~l~~~~l~~ 440 (759)
.....+++.+.......+......+++++|+|||||||.||||+++|++++.+ .......+++ ..++++++..|+.|
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (542)
T PRK07786 150 -DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQ-AMTCLRTNGADINSDVGFVGVPLFH 227 (542)
T ss_pred -ccccCHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHH-HHHHHHhcCCCCCCceEEEecchHH
Confidence 01133444433322222223455678999999999999999999999996544 4444455666 56889999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
.+++ ..++.++..|+++++.+.. . +++..+++.|+++++|+++++|+++..|+..... .. ...++|.+++||++
T Consensus 228 ~~g~-~~~~~~l~~G~~~v~~~~~-~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~-~~~~lr~i~~gg~~ 301 (542)
T PRK07786 228 IAGI-GSMLPGLLLGAPTVIYPLG-A-FDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQA--RP-RDLALRVLSWGAAP 301 (542)
T ss_pred HHHH-HHHHHHHHccCEEEEccCC-C-cCHHHHHHHHHHcCCeEEEehHHHHHHHHhCccc--Cc-cCcceEEEEECCCC
Confidence 8885 6789999999999997532 2 4899999999999999999999999999876432 11 22379999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
+++++++++.+.++ +.++++.||+||++.+.+...........+++|+|++++.++|+|+++++++.|+.|||+++|
T Consensus 302 ~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g- 378 (542)
T PRK07786 302 ASDTLLRQMAATFP--EAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRA- 378 (542)
T ss_pred CCHHHHHHHHHHcC--CCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEC-
Confidence 99999999999986 488999999999986544322211123557899999999999999999999999999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
+.+++||+++++.+...|. +|||+|||+++ +|++|++.|||++|.+||.|.+++|++
T Consensus 379 -~~~~~gy~~~~~~~~~~f~---~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~ 454 (542)
T PRK07786 379 -PTLMSGYWNNPEATAEAFA---GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIG 454 (542)
T ss_pred -hhhhhhhcCCHHHHHHHhh---CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEe
Confidence 8999999999998887763 68999999987 899999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
++++..++.++++|++.+.... ...+++++++++++++|++|..|+++++||+|++||++|++|++.+...
T Consensus 455 ~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 525 (542)
T PRK07786 455 RADEKWGEVPVAVAAVRNDDAA--LTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC 525 (542)
T ss_pred ccCcccCceEEEEEEECCCCCC--CCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence 9887778889999998764321 1257899999999999999999999999999999999999999998754
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=566.92 Aligned_cols=473 Identities=18% Similarity=0.178 Sum_probs=359.3
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
|-+.+.|+++++ ++|+++|+++.+. +..+++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||++
T Consensus 2 ~~~~~~l~~~~~-~~~~~~a~~~~~~--~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 2 NELAAALSDAMT-ASGRDLVVLDRES--GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred chHHHHHHHHhc-CCCCceEEeCCCC--CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 446778888888 8999999987632 2258999999999999999999988 8999999999999999999999999
Q ss_pred hCCeEEecCCC--------CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCc
Q 004348 280 IGAVHSVVFAG--------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (759)
Q Consensus 280 aGav~vpldp~--------~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~ 351 (759)
+|+++++ +|. ...+++.+++++++++++|+++... ..+... . .. +.+.+..
T Consensus 77 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~---~----~~----~~~~~~~ 135 (525)
T PRK05851 77 AGAAVSI-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAV---D----SS----VTVHDLA 135 (525)
T ss_pred cCCCCcC-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHh---h----cc----ccccccc
Confidence 9998754 442 2335667789999999999875421 111110 0 00 0000000
Q ss_pred cccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCC-CCc
Q 004348 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK-PSD 430 (759)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~-~~d 430 (759)
..... ....+.....+++++||+|||||||.||||+++|++++ .........+++. ++|
T Consensus 136 ------------------~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~-~~~~~~~~~~~~~~~~d 195 (525)
T PRK05851 136 ------------------TAAHT-NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVL-SNLRGLNARVGLDAATD 195 (525)
T ss_pred ------------------ccccc-cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHH-HHHHHHHHHhCCCCCCC
Confidence 00000 00001112467899999999999999999999999954 4455566678888 899
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCC
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (759)
++++.+|++|++++ ..++.+|+.|+++++.+......++..+++.++++++|++..+|.++..+.+.... ....++++
T Consensus 196 ~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~-~~~~~l~~ 273 (525)
T PRK05851 196 VGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR-VSDVDLGA 273 (525)
T ss_pred eEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc-ccCCCHHH
Confidence 99999999999996 56889999999999975321222678899999999999886666656555443221 22346789
Q ss_pred eeEEEEeCCCCCHHHHHHHHHH---hCCCCccEeeeeccccccceecccCCCC-------------CCCCCCCcCCCCCC
Q 004348 511 LRVLGSVGEPINPSAWRWFFNV---VGDSRCPISDTWWQTETGGFMITPLPGA-------------WPQKPGSATFPFFG 574 (759)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~---~g~~~~~l~n~YG~TE~~~~~~~~~~~~-------------~~~~~~~iG~p~~g 574 (759)
||.+++||++++++++++|.+. +|.+..+++|.||+||++..++...+.. ...+.+++|+|++|
T Consensus 274 lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g 353 (525)
T PRK05851 274 LRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPG 353 (525)
T ss_pred hheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCC
Confidence 9999999999999999999875 3422346999999999986554332210 01234689999999
Q ss_pred ceEEEECCCC-cccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee------------------c
Q 004348 575 VQPVIVDEKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------S 635 (759)
Q Consensus 575 ~~~~IvD~~g-~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------~ 635 (759)
++++|+|+++ .++|.|+.|||+|+| +++++|||++++.+ .+|||+|||+|+ +
T Consensus 354 ~~v~i~d~~~~~~~~~g~~GEl~v~g--~~~~~GY~~~~~~~-------~~~~~~TGDl~~~~~G~l~~~GR~dd~i~~~ 424 (525)
T PRK05851 354 MEVRISPGDGAAGVAGREIGEIEIRG--ASMMSGYLGQAPID-------PDDWFPTGDLGYLVDGGLVVCGRAKELITVA 424 (525)
T ss_pred cEEEEECCCCCccCCCCCeEEEEEec--CchhhccccCCccC-------CCCceeccceEEEECCEEEEEeecCCEEEEC
Confidence 9999999876 468999999999999 89999999998632 268999999988 8
Q ss_pred cEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCC--ccccEEEEeC-
Q 004348 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF--AAPDKIHWAP- 712 (759)
Q Consensus 636 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~--~vP~~iv~v~- 712 (759)
|+||+|.|||++|.+||+|.+|+|++++++..++.+.++|+....... .++++++++++|+.+ ++|..+++++
T Consensus 425 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~l~~~P~~~~~v~~ 500 (525)
T PRK05851 425 GRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPD----EAGARSEVVQRVASECGVVPSDVVFVAP 500 (525)
T ss_pred CEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcc----hHHHHHHHHHHHHHHhCCCccEEEEECC
Confidence 999999999999999999999999999988777777777765422111 233444455555554 8999999999
Q ss_pred -CCCCCCCCcccHHHHHHHHhc
Q 004348 713 -GLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 713 -~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+||+|++|||+|++|++.+.+
T Consensus 501 ~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 501 GSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred CCcCcCcchHHHHHHHHHHHHh
Confidence 899999999999999988753
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=573.48 Aligned_cols=490 Identities=19% Similarity=0.206 Sum_probs=373.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCC---CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~ 277 (759)
++.++|+++++ ++|+++|+++.+.. .+..+.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||
T Consensus 35 ~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~ 112 (612)
T PRK12476 35 TLISLIERNIA-NVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAA 112 (612)
T ss_pred cHHHHHHHHHH-hCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHH
Confidence 47788998888 89999999975311 12346899999999999999999987 999999999999999999999999
Q ss_pred HHhCCeEEec-CCCCC--HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc
Q 004348 278 ARIGAVHSVV-FAGFS--SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (759)
Q Consensus 278 ~kaGav~vpl-dp~~~--~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (759)
+++|++++|+ ++.++ .+++.+++++++++++|+++... ..+......+. ......++.++...
T Consensus 113 ~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~--~~~~~~~i~~~~~~--- 178 (612)
T PRK12476 113 IKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAA---------EAVEGFLRNLP--RLRRPRVIAIDAIP--- 178 (612)
T ss_pred HHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHH---------HHHHHHHhhcc--cccCceEEEecccc---
Confidence 9999999999 68877 88999999999999999976532 22222111110 00112333332210
Q ss_pred ccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC-CCCCcEEE
Q 004348 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYW 433 (759)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~-l~~~d~~l 433 (759)
.............++++++|+|||||||+||||+++|++++.+ .......++ +.++++++
T Consensus 179 ------------------~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~~~~~l 239 (612)
T PRK12476 179 ------------------DSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTN-LVQMILSIDLLDRNTHGV 239 (612)
T ss_pred ------------------ccccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHH-HHHHHHHhccCCCCceEE
Confidence 0000011112346789999999999999999999999995544 333444567 78899999
Q ss_pred EecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHH--HcCCcEEEehHHHHHHHHhcCC--cccccCCCC
Q 004348 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD--KYKVTIFYTAPTLVRSLMRDGN--EYVTRYSRK 509 (759)
Q Consensus 434 ~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~--~~~vT~l~~~Ps~l~~l~~~~~--~~~~~~~l~ 509 (759)
+.+|++|..++. .++.+++.|+++++........++..+++.++ ++++|++..+|+++..++.... ......+++
T Consensus 240 ~~~Pl~h~~g~~-~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~ 318 (612)
T PRK12476 240 SWLPLYHDMGLS-MIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLS 318 (612)
T ss_pred EeCCcccccchH-HHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchh
Confidence 999999999864 44555566777666643222237899999995 5899999999998887765321 111234688
Q ss_pred CeeEEEEeCCCCCHHHHHHHHHHhC---CCCccEeeeeccccccceecccCCCCC-------------------------
Q 004348 510 SLRVLGSVGEPINPSAWRWFFNVVG---DSRCPISDTWWQTETGGFMITPLPGAW------------------------- 561 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g---~~~~~l~n~YG~TE~~~~~~~~~~~~~------------------------- 561 (759)
+|| +++||++++++++++|.+.++ .+...+++.||+||++..++...+...
T Consensus 319 ~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (612)
T PRK12476 319 NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPN 397 (612)
T ss_pred Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCC
Confidence 999 999999999999999999883 223469999999998765432211100
Q ss_pred CCCCCCcCCCCCCceEEEECCC-CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc----------------cCC
Q 004348 562 PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----------------PFP 624 (759)
Q Consensus 562 ~~~~~~iG~p~~g~~~~IvD~~-g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~----------------~~~ 624 (759)
....+++|+|++|++++|+|++ ++++|.|+.|||+|+| |+++.|||++|+.+.+.|.. ..+
T Consensus 398 ~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~ 475 (612)
T PRK12476 398 AVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHG--DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDG 475 (612)
T ss_pred cceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcC--CcccccccCChHHHHHHHhhhhccccccccccccccCCC
Confidence 0123578999999999999987 9999999999999999 89999999999999888752 123
Q ss_pred cEEEeCCeee------------------ccEeeCHHHHHHHHhc-CCccce--EEEEeEecCCCCeEEEEEEEEcCCCC-
Q 004348 625 GYYFTGDGCS------------------SGHRIGTAEVESALVS-HPQCAE--AAVVGVEHEVKGQGIYAFVTLVEGVP- 682 (759)
Q Consensus 625 g~y~TGDl~~------------------~G~rI~~~eIE~~L~~-~p~V~e--a~Vv~~~~~~~~~~lva~Vv~~~~~~- 682 (759)
+||+|||+|+ +|+||+|.|||++|.+ ||.|.+ ++|++++++. ++.++++|+++++..
T Consensus 476 ~w~~TGDlg~~~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~ 554 (612)
T PRK12476 476 TWLRTGDLGVYLDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSR 554 (612)
T ss_pred CeeeccccceeECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCccc
Confidence 5999999996 8999999999999985 899999 7778888776 788999999876532
Q ss_pred CcHHHHHHHHHHHHhhcC-CCcc-ccEEEEeC--CCCCCCCCcccHHHHHHHHhc
Q 004348 683 YSEELRKSLVLAVRKQIG-AFAA-PDKIHWAP--GLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 683 ~~~~l~~~l~~~l~~~Lp-~~~v-P~~iv~v~--~lP~T~~GKvdR~~L~~~~~~ 733 (759)
.+ .++|.++++++|. .|++ |..+++++ +||+|++|||+|++|++.+..
T Consensus 555 ~~---~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 555 AD---PAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred cc---HHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 22 3556666666666 3777 68888887 699999999999999998754
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=583.41 Aligned_cols=481 Identities=20% Similarity=0.255 Sum_probs=375.4
Q ss_pred HHHHHHhhcccccCCC-eEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
+++++|+++++ ++|+ ++|+.+. ..+.+||+||.++++++|++|++. +++||+|+|+++|++|+++++|||++
T Consensus 205 t~~~~l~~~~~-~~p~~~~a~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~ 277 (718)
T PRK08043 205 TLYEALLSAQY-RYGAGKPCIEDV-----NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASL 277 (718)
T ss_pred CHHHHHHHHHH-HhCCCCcceEcC-----CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 46788999888 8998 6888642 146899999999999999999987 59999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|+++.++.+++++++++++++++|++++.....+...+ ...+ ..+. ++.+++... ...
T Consensus 278 ~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~-------~~~~----~~~~-~i~~~~~~~----~~~ 341 (718)
T PRK08043 278 RRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHL-------PEQL----TQVR-WVYLEDLKD----DVT 341 (718)
T ss_pred cCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCCh-------hhhh----cccc-EEEhhhhhh----hcc
Confidence 99999999999999999999999999999997654211000000 0001 1111 222221100 000
Q ss_pred cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
... ....+.+... + ........++|+++|+|||||||.||||+++|++++ .........++++++|++++.+|++
T Consensus 342 ~~~-~~~~~~~~~~--~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~Pl~ 416 (718)
T PRK08043 342 TAD-KLWIFAHLLM--P-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLL-ANVEQIKTIADFTPNDRFMSALPLF 416 (718)
T ss_pred hhH-HHHHHHHHhC--C-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHH-HHHHHHHHhhCCCccCeEEEcCcch
Confidence 000 0000000000 0 011123467899999999999999999999999954 4445556678899999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++...++.+|..|+++++.+.. .++..+++.++++++|++..+|+++..+.+.. ...++++||.+++|||
T Consensus 417 h~~g~~~~~~~~l~~G~~vv~~~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----~~~~~~~lr~i~~gg~ 489 (718)
T PRK08043 417 HSFGLTVGLFTPLLTGAEVFLYPSP---LHYRIVPELVYDRNCTVLFGTSTFLGNYARFA----NPYDFARLRYVVAGAE 489 (718)
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCCc---ccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc----CcccccceEEEEEeCc
Confidence 9998877889999999999998642 36678899999999999999999998876642 2346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++.++|.+.+| +++++.||+||++.+.+...+. ..+.+++|+|++|++++|+|+++. +..|||+|+|
T Consensus 490 ~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d~~~~----~~~Gel~v~g 560 (718)
T PRK08043 490 KLQESTKQLWQDKFG---LRILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSVPGI----EQGGRLQLKG 560 (718)
T ss_pred cCCHHHHHHHHHHcC---CCeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEecCCCC----CCceEEEEec
Confidence 999999999999887 7899999999998765543221 245789999999999999998753 4569999999
Q ss_pred CCCcccccccC--ChhhHHhhhc-----ccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 600 SWPGAFRTLYG--DHERYETTYF-----KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 600 ~~~~v~~GY~~--~~e~~~~~~~-----~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
++++.|||+ +++.+..... ...+|||+|||+|+ +|+||+|.|||++|.+|+.
T Consensus 561 --~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~ 638 (718)
T PRK08043 561 --PNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSP 638 (718)
T ss_pred --CCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCc
Confidence 899999998 4442211110 01268999999998 8999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
+.+++|++.+++..++.++++++. ...+ .++|+++++++ |+.|++|..|+++++||+|++|||||++|++++.
T Consensus 639 ~~~~avv~~~~~~~ge~~v~~~~~---~~~~---~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~ 712 (718)
T PRK08043 639 DKQHATAIKSDASKGEALVLFTTD---SELT---REKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVD 712 (718)
T ss_pred cceEEEEEccCCCCCceEEEEEcC---cccC---HHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHh
Confidence 999999999888888888888742 1222 46799999987 9999999999999999999999999999998876
Q ss_pred c
Q 004348 733 R 733 (759)
Q Consensus 733 ~ 733 (759)
.
T Consensus 713 ~ 713 (718)
T PRK08043 713 E 713 (718)
T ss_pred c
Confidence 4
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=557.67 Aligned_cols=486 Identities=22% Similarity=0.311 Sum_probs=393.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ||++|+++. ++.+||+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus 26 ~~~~~~~~~a~---p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~ 96 (536)
T PRK10946 26 PLTDILTRHAA---SDAIAVICG------ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL 96 (536)
T ss_pred cHHHHHHHhhC---CCCeEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHc
Confidence 57888988763 999999976 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++++++..+..++..++++++++++++++..... ...... ..+.. ..+.+..+++.+...
T Consensus 97 G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~~~~-~~l~~---~~~~~~~~~~~~~~~--------- 159 (536)
T PRK10946 97 GVAPVNALFSHQRSELNAYASQIEPALLIADRQHALF----SDDDFL-NTLVA---EHSSLRVVLLLNDDG--------- 159 (536)
T ss_pred CeEEecCCccccHHHHHHHHhhcCCCEEEEecccccc----chHHHH-HHHHh---hCCCceEEEEecCCC---------
Confidence 9988877777788899999999999999987653110 001111 11111 113344333332111
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...+.+.+.......+.....++++++|+|||||||.||||+++|++++.+ .......+++.++|++++..|++|
T Consensus 160 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h 234 (536)
T PRK10946 160 ----EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYS-VRRSVEICGFTPQTRYLCALPAAH 234 (536)
T ss_pred ----CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHH-HHHHHHhcCCCCCceEEEecCccc
Confidence 112222332222222233456789999999999999999999999995544 445566788999999999999999
Q ss_pred hchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
.+++.. .++.+|..|+++++.+. +++..++++++++++|++.++|+++..|++..........+++||.+++||+
T Consensus 235 ~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~ 310 (536)
T PRK10946 235 NYPMSSPGALGVFLAGGTVVLAPD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGA 310 (536)
T ss_pred cccchhhhHHHHhhcCcEEEECCC----CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCC
Confidence 877543 57889999999998654 4888999999999999999999999999876322222345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCC-CCceEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~-~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++.++|.+.++ +++++.||+||++..... .........+++|+|+ +++.++|+|+++++++.|+.|||+|+
T Consensus 311 ~l~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~ 386 (536)
T PRK10946 311 RLSETLARRIPAELG---CQLQQVFGMAEGLVNYTR-LDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTR 386 (536)
T ss_pred CCCHHHHHHHHHhcC---CeEEEeecccccceeeec-CCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEe
Confidence 999999999998887 789999999997643321 1111123457899999 79999999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| +.++.|||++++.+...|.. +|||+|||+|+ +|++|+|.|||++|.+||+|.+++|
T Consensus 387 g--~~~~~GY~~~~~~t~~~~~~--d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v 462 (536)
T PRK10946 387 G--PYTFRGYYKSPQHNASAFDA--NGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAAL 462 (536)
T ss_pred c--CccchhhcCCcccchhhccc--CCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEE
Confidence 9 89999999999988776643 68999999997 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+++++...++.++++|+++++.. .++|++++++. ||+|++|..+++++++|+|++||++|++|++.+...
T Consensus 463 ~~~~~~~~g~~~~a~vv~~~~~~-----~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~ 533 (536)
T PRK10946 463 VSMEDELMGEKSCAFLVVKEPLK-----AVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 533 (536)
T ss_pred EcCCCcccCceEEEEEEeCCCCC-----HHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhh
Confidence 99998888889999999876522 46788999886 999999999999999999999999999999987654
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=556.38 Aligned_cols=469 Identities=22% Similarity=0.274 Sum_probs=376.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGV-KKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv-~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|.++ .+|+++|+++. +..+||+||.++++++|..|.++|+ ++||+|+++++|++++++++|||++
T Consensus 4 ~~~~~l~~~---~~p~~~Al~~~------~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~ 74 (540)
T PRK13388 4 TIAQLLRDR---AGDDTIAVRYG------DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAAL 74 (540)
T ss_pred hHHHHHHhh---ccCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHh
Confidence 567777764 37999999876 5789999999999999999999999 8999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++.+++..++++++++++|+++... ..+ ..+. .+..+ ++.++..
T Consensus 75 ~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~----~~~~--~~~~~-~i~~~~~--------- 129 (540)
T PRK13388 75 GGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHR---------PLL----DGLD--LPGVR-VLDVDTP--------- 129 (540)
T ss_pred CCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhh---------HHH----Hhhc--ccCce-EEEccch---------
Confidence 999999999999999999999999999999976532 111 1110 01222 3322211
Q ss_pred cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.|.+.+.......+.....++++++|+|||||||+||||+++|+++ ..........+++.++|+++..+|+.
T Consensus 130 -------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~-~~~~~~~~~~~~~~~~d~~l~~~p~~ 201 (540)
T PRK13388 130 -------AYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRL-AFAGRALTERFGLTRDDVCYVSMPLF 201 (540)
T ss_pred -------hhhhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHH-HHHHHHHHHHhCCCCCCEEEEeeCch
Confidence 1222222111112222356799999999999999999999999995 44455556778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++...++.+|..|+++++.+. +++..+++.|+++++|++..+|+.+..++..... ......++|.+ + |+
T Consensus 202 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~~~l~~~-~-G~ 273 (540)
T PRK13388 202 HSNAVMAGWAPAVASGAAVALPAK----FSASGFLDDVRRYGATYFNYVGKPLAYILATPER--PDDADNPLRVA-F-GN 273 (540)
T ss_pred hhcchHHHHHHHHHcCcEEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--ccccccceEEE-E-CC
Confidence 998876666678999999988643 4889999999999999999999999988876432 11123466643 3 66
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEE-----------EECCCCccc-
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV-----------IVDEKGVEI- 587 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~-----------IvD~~g~~v- 587 (759)
+++++..++|.+.++ ++++|.||+||++.+++.. . ....+++|+|++|++++ ++|++|+++
T Consensus 274 ~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~-~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~ 346 (540)
T PRK13388 274 EASPRDIAEFSRRFG---CQVEDGYGSSEGAVIVVRE-P---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLN 346 (540)
T ss_pred CCCHHHHHHHHHHhC---CceecccccccccceeecC-C---CCCCCCCCCCCCCcEEEcCCCCccccceeccCcccccc
Confidence 778888899988886 7899999999998755422 1 13467899999998753 556667766
Q ss_pred CCCceEEEEEe-cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHH
Q 004348 588 EGECSGYLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESA 647 (759)
Q Consensus 588 p~g~~GEL~I~-g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~ 647 (759)
+.+..|||+++ | ++++.||+++++.+.+.|. +|||+|||+|+ +|++|+|.|||++
T Consensus 347 ~~~~~GEl~v~~g--~~~~~gY~~~~~~t~~~~~---~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~ 421 (540)
T PRK13388 347 ADEAIGELVNTAG--AGFFEGYYNNPEATAERMR---HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERI 421 (540)
T ss_pred CCCcceEEEEecC--CcccccccCChHHHHHHhh---cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHH
Confidence 34679999998 9 8999999999999888762 68999999988 7999999999999
Q ss_pred HhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh--cCCCccccEEEEeCCCCCCCCCcccHH
Q 004348 648 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ--IGAFAAPDKIHWAPGLPKTRSGKIMRR 725 (759)
Q Consensus 648 L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~--Lp~~~vP~~iv~v~~lP~T~~GKvdR~ 725 (759)
|.+||+|.+|+|++++++..++.+++++++.++...+ .++++++++.+ |++|++|..++++++||+|++||++|+
T Consensus 422 l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~ 498 (540)
T PRK13388 422 LLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD---PDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKR 498 (540)
T ss_pred HHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC---HHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHH
Confidence 9999999999999999887788889999887665443 46788888764 999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 004348 726 ILRKIASRQ 734 (759)
Q Consensus 726 ~L~~~~~~~ 734 (759)
+|+++....
T Consensus 499 ~L~~~~~~~ 507 (540)
T PRK13388 499 ELIAQGWAT 507 (540)
T ss_pred hHHHhccCC
Confidence 999976543
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=555.58 Aligned_cols=476 Identities=19% Similarity=0.231 Sum_probs=391.4
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.+.|.+++. .+|+++|+.+. ++++||+||.++++++|+.|++.|+++|++|+|+++++.++++++|||+++|
T Consensus 2 ~~~~l~~~a~-~~p~~~a~~~~------~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G 74 (502)
T TIGR01734 2 LIEAIQAFAE-TYPQTIAYRYQ------GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG 74 (502)
T ss_pred HHHHHHHHHH-HCCCceEEEcC------CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhC
Confidence 4577888888 89999999876 6789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (759)
++++|+++.++.+++.++++.++++.+++++...... .... ++.+....
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------~~~~-~~~~~~~~---------- 123 (502)
T TIGR01734 75 HAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDA--------------------VGTQ-IITLSALE---------- 123 (502)
T ss_pred CEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccc--------------------cCCc-eEEchHhh----------
Confidence 9999999999999999999999999999976542110 0000 11111000
Q ss_pred CCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchh
Q 004348 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (759)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~ 441 (759)
................++++++|+|||||||.||||+++|+++. ....+....+++..+++++...|++|.
T Consensus 124 --------~~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~ 194 (502)
T TIGR01734 124 --------QAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLV-SFTNWMLADFPLSEGKQFLNQAPFSFD 194 (502)
T ss_pred --------hhhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHH-HHHHHHHHhCCCCCCceEEeecCceec
Confidence 00000000001123457889999999999999999999999954 445555566888999999999999998
Q ss_pred chhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCC
Q 004348 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (759)
Q Consensus 442 ~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (759)
.++ +.++.+|+.|+++++.+.... .++..+++.++++++|.+.++|+++..++.... .....++++|.++++|+++
T Consensus 195 ~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~--~~~~~~~~l~~~~~~G~~~ 270 (502)
T TIGR01734 195 LSV-MDLYPCLASGGTLHCLDKDIT-NNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPN--FNQENYPHLTHFLFCGEEL 270 (502)
T ss_pred hhH-HHHHHHHHCCCEEEEcCHHHh-cCHHHHHHHHHHcCCeEEEEChhHHHHHHhccc--cccccCCcccEEEEcCCcC
Confidence 874 678899999999999875322 388999999999999999999999988765532 2344678999999999999
Q ss_pred CHHHHHHHHHHhCCCCccEeeeeccccccceeccc-CCCC--CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEe
Q 004348 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP-LPGA--WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~-~~~~--~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++++.+.++ ++++++.||+||++...+.. .... ......++|+|++|++++|+|+++++++.|+.|||+|+
T Consensus 271 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~ 348 (502)
T TIGR01734 271 PVKTAKALLERFP--KATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIV 348 (502)
T ss_pred CHHHHHHHHHHCC--CcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEc
Confidence 9999999999986 48999999999997644322 1111 12334679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhccc-CCcEEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKP-FPGYYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~-~~g~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| +.++.||+++++.+...|+.. ..+||+|||+|+ +|++|+|.|||++|.+||.|.+|+|
T Consensus 349 g--~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v 426 (502)
T TIGR01734 349 G--PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVV 426 (502)
T ss_pred c--ccccccccCCcccchHhheeCCCcEEEECCCEEEEECCEEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEE
Confidence 9 899999999999988887642 345999999988 8999999999999999999999999
Q ss_pred EeEe-cCCCCeEEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 660 VGVE-HEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 660 v~~~-~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
+++. +....+.++++|++.+..... .++.++|+++++++||+|++|+.++++++||+|++||++|++|++++.
T Consensus 427 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 427 VPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred EEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 9876 445668899999987643322 334588999999999999999999999999999999999999999865
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-61 Score=552.20 Aligned_cols=481 Identities=23% Similarity=0.278 Sum_probs=396.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|.++++ ++|+++|+++. ++.+||+||.++++++|+.|.+.|+++|++|++++++++++++++|||+++
T Consensus 13 ~~~~~~~~~~~-~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~ 85 (524)
T PRK06188 13 TYGHLLVSALK-RYPDRPALVLG------DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLA 85 (524)
T ss_pred cHHHHHHHHHH-HCCCCeEEEEC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 57788999998 89999999986 578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++..++++++++++++++... ...+.+..... +.+.+++.+.....
T Consensus 86 G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 145 (524)
T PRK06188 86 GLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF--------VERALALLARV----PSLKHVLTLGPVPD-------- 145 (524)
T ss_pred CCEEEecccCCCHHHHHHHHHhcCceEEEEecchh--------hHHHHHHhhhc----CCceEEEEeCCccc--------
Confidence 99999999999999999999999999999976521 11111111111 23344443332110
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
..+..+...............++++++|+|||||||.||||+++|.+++ .........+++..+|++++..|++|
T Consensus 146 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~-~~~~~~~~~~~~~~~~~~l~~~pl~~ 220 (524)
T PRK06188 146 ----GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIA-TMAQIQLAEWEWPADPRFLMCTPLSH 220 (524)
T ss_pred ----hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHH-HHHHHHHhhcCCCcCcEEEEecCchh
Confidence 0000001111111111112345679999999999999999999999954 44555666788999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..++ .++.+++.|+++++.+. .++..+++.++++++|++.++|+++..|++.... ...+++++|.+++||++
T Consensus 221 ~~g~--~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gg~~ 292 (524)
T PRK06188 221 AGGA--FFLPTLLRGGTVIVLAK----FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL--RTRDLSSLETVYYGASP 292 (524)
T ss_pred hhhH--HHHHHHHcCCEEEEcCC----CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc--cCCCCcceeEEEEcCCC
Confidence 8774 46788999999999864 3899999999999999999999999999887542 23478899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC----CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEE
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~ 596 (759)
++++.++.+.+.++ ..+++.||+||++..+....... ......++|+|++|+.++|+|+++++++.|+.|||+
T Consensus 293 ~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~ 369 (524)
T PRK06188 293 MSPVRLAEAIERFG---PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEIC 369 (524)
T ss_pred CCHHHHHHHHHHhC---chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEE
Confidence 99999999988887 67999999999976544322111 123567899999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceE
Q 004348 597 IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEA 657 (759)
Q Consensus 597 I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea 657 (759)
|+| +.++.||+++++.+...+ .+|||+|||+++ +|++|+|.|||++|.+|++|.++
T Consensus 370 v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~ 444 (524)
T PRK06188 370 VRG--PLVMDGYWNRPEETAEAF---RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQV 444 (524)
T ss_pred EEC--cchhhhhcCChHHhhhhh---cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEE
Confidence 999 899999999998887776 368999999987 89999999999999999999999
Q ss_pred EEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 658 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 658 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
+|++.+++..++.+++++++++..... .++|+++++++++.|++|..|+++++||+|++||++|++|++.+.
T Consensus 445 ~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~ 516 (524)
T PRK06188 445 AVIGVPDEKWGEAVTAVVVLRPGAAVD---AAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYW 516 (524)
T ss_pred EEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHH
Confidence 999998887889999999987654433 578999999999999999999999999999999999999999874
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=559.63 Aligned_cols=491 Identities=21% Similarity=0.327 Sum_probs=388.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|+++++ ++|+++|+++. ++.+||.||.++++++|++|.+. |+++||+|+++++|++++++++|||++
T Consensus 25 ~~~~~l~~~~~-~~p~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 25 SVVEVFERSCK-KFADRPAFSNL------GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred cHHHHHHHHHH-hCCCCeeEecC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57789999998 89999999865 57899999999999999999985 999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEec--cC-ccc---
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE--NQ-SAM--- 353 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~--~~-~~~--- 353 (759)
+|++++|++|.++.+++.+++++++++++|+++.... ........ .....++... +. ...
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 163 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGK---------LVQEVLPD-----TGIEYLIEAKMGDLLPAAKGW 163 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEeccccch---------HHHHhhhc-----cCceEEEeechhhccccccch
Confidence 9999999999999999999999999999998765321 11111110 0111111100 00 000
Q ss_pred ---------cccccccCCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH
Q 004348 354 ---------TRENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (759)
Q Consensus 354 ---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (759)
..............|++...... ..........+++++|+|||||||.||||+++|++++.+.. .....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~-~~~~~ 242 (562)
T PRK12492 164 LVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANML-QVRAC 242 (562)
T ss_pred hcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHH-HHHHH
Confidence 00000000011233444332211 11112245678999999999999999999999999644433 22222
Q ss_pred hC---------CCC-CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHH
Q 004348 424 FD---------YKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVR 493 (759)
Q Consensus 424 ~~---------l~~-~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~ 493 (759)
++ +.. +++++...|+.|..++.+.++..+..|+++++.... .++..+++.|+++++|++..+|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~ 319 (562)
T PRK12492 243 LSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNP---RDIPGFIKELGKWRFSALLGLNTLFV 319 (562)
T ss_pred HhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCC---cCHHHHHHHHHHhCCceeeCcHHHHH
Confidence 22 233 356788899999998777777788899988776432 37899999999999999999999999
Q ss_pred HHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCC
Q 004348 494 SLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573 (759)
Q Consensus 494 ~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~ 573 (759)
.|++... ....+++++|.+++||+++++++.++|.+.++ +++++.||+||++.+++...... ....+++|+|++
T Consensus 320 ~l~~~~~--~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~ 393 (562)
T PRK12492 320 ALMDHPG--FKDLDFSALKLTNSGGTALVKATAERWEQLTG---CTIVEGYGLTETSPVASTNPYGE-LARLGTVGIPVP 393 (562)
T ss_pred HHHhCcC--cccccccceeEEEeccccCCHHHHHHHHHHhC---CceeeccCccccCceeeecCCcc-cccCCccceecC
Confidence 9987653 23456789999999999999999999998876 78999999999987655332221 234578999999
Q ss_pred CceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------
Q 004348 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------- 634 (759)
Q Consensus 574 g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------- 634 (759)
++.++|+|+++++++.|+.|||+|+| +.+++|||++++.+.+.|. .+|||+|||+|+
T Consensus 394 ~~~v~ivd~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~ 469 (562)
T PRK12492 394 GTALKVIDDDGNELPLGERGELCIKG--PQVMKGYWQQPEATAEALD--AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIV 469 (562)
T ss_pred CCEEEEECCCCCCCCCCCceEEEEeC--CccccccccCchhhhhccc--CCCceecCcEEEECCCCeEEEecccCCeEEE
Confidence 99999999999999999999999999 8999999999999887653 368999999988
Q ss_pred ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCC
Q 004348 635 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 714 (759)
Q Consensus 635 ~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~l 714 (759)
+|++|+|.|||++|.+||.|.+++|++.++...++.++++++..+... + .++|+++++++|+.|++|..++++++|
T Consensus 470 ~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~---~~~i~~~~~~~l~~~~~P~~i~~~~~~ 545 (562)
T PRK12492 470 SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL-S---VEELKAYCKENFTGYKVPKHIVLRDSL 545 (562)
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC-C---HHHHHHHHHHhcccccCCcEEEEeccC
Confidence 799999999999999999999999999998878889999998765432 2 578999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHH
Q 004348 715 PKTRSGKIMRRILRKI 730 (759)
Q Consensus 715 P~T~~GKvdR~~L~~~ 730 (759)
|+|++||++|++|+++
T Consensus 546 P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 546 PMTPVGKILRRELRDI 561 (562)
T ss_pred CCCCCCceeHHHHHhh
Confidence 9999999999999975
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-61 Score=548.75 Aligned_cols=462 Identities=21% Similarity=0.322 Sum_probs=380.0
Q ss_pred hhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEe
Q 004348 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 286 (759)
Q Consensus 207 ~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vp 286 (759)
+.+++ .+||++|+.+.. .++.+||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|
T Consensus 2 ~~~a~-~~p~~~a~~~~~----~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 76 (488)
T PRK09088 2 AFHAR-LQPQRLAAVDLA----LGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVP 76 (488)
T ss_pred chhhh-hCCCceEEEecC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEe
Confidence 34556 799999998631 1578999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCcc
Q 004348 287 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDI 366 (759)
Q Consensus 287 ldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 366 (759)
+++.++.+++.+++++++++++|+++....... ..+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------------------~~~~~~~----------------- 116 (488)
T PRK09088 77 LNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------------------DVEDLAA----------------- 116 (488)
T ss_pred eCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------------------cccchhh-----------------
Confidence 999999999999999999999998765321000 0000000
Q ss_pred chhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhH
Q 004348 367 WWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446 (759)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~ 446 (759)
+.+...... ........++++++++|||||||.||+|+++|++++ .....+...+.+.++|++++..|+.|..++..
T Consensus 117 -~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~ 193 (488)
T PRK09088 117 -FIASADALE-PADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQ-QTAHNFGVLGRVDAHSSFLCDAPMFHIIGLIT 193 (488)
T ss_pred -hhhhccccc-cccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHH-HHHHHHHHhhCCCCCcEEEEecchHHHHHHHH
Confidence 000000000 001112356789999999999999999999999954 44445555667888999999999999999877
Q ss_pred HHHHHhhcCcEEEEecCCCCCCChhHHHHHHH--HcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHH
Q 004348 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD--KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS 524 (759)
Q Consensus 447 ~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~--~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~ 524 (759)
.++.++..|+++++.++ +++..++..+. ++++|+++.+|++++.|.+... ....++++||.+++||++++.+
T Consensus 194 ~~~~~l~~g~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~gG~~~~~~ 267 (488)
T PRK09088 194 SVRPVLAVGGSILVSNG----FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--FDAAALRHLTALFTGGAPHAAE 267 (488)
T ss_pred HHHHHHhcCCEEEEcCC----CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--cCccccccceEEEecCCCCCHH
Confidence 78889999999998754 37788888886 4899999999999999887642 1234578999999999999999
Q ss_pred HHHHHHHHhCCCCccEeeeeccccccceecccCC-CCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCc
Q 004348 525 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPG 603 (759)
Q Consensus 525 ~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~ 603 (759)
.++++.+. + +++++.||+||++........ .....+++++|+|+++++++|+|+++++++.|+.|||+|+| |+
T Consensus 268 ~~~~~~~~-g---~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~ 341 (488)
T PRK09088 268 DILGWLDD-G---IPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRG--PN 341 (488)
T ss_pred HHHHHHHh-C---CceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEEC--Cc
Confidence 88887764 4 789999999999865432211 11123567899999999999999999999999999999999 89
Q ss_pred ccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEec
Q 004348 604 AFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEH 664 (759)
Q Consensus 604 v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~ 664 (759)
++.||+++++.+.+.+. .+|||+|||+|+ +|++|+|.|||++|.+||.|.+++|+++++
T Consensus 342 ~~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~ 419 (488)
T PRK09088 342 LSPGYWRRPQATARAFT--GDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMAD 419 (488)
T ss_pred cchhhcCChhhhhhhhc--CCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCC
Confidence 99999999998877664 378999999998 799999999999999999999999999988
Q ss_pred CCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 665 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 665 ~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+..++..+++|+++++...+ .++|++++++++++|++|..|+++++||+|++||++|++|++++..
T Consensus 420 ~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~ 485 (488)
T PRK09088 420 AQWGEVGYLAIVPADGAPLD---LERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAA 485 (488)
T ss_pred ccCCceeEEEEEECCCCCCC---HHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence 77778889999987654433 5789999999999999999999999999999999999999998764
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-61 Score=557.37 Aligned_cols=493 Identities=21% Similarity=0.297 Sum_probs=378.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++. +.++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 15 ~~~~~l~~~~~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~ 87 (579)
T PLN03102 15 TPITFLKRASE-CYPNRTSIIYG------KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87 (579)
T ss_pred cHHHHHHHHHH-hCCCCeEEEEC------CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 46778899888 89999999986 578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhh--cCCCccEEEEeccCcccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK--SGISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~vi~~~~~~~~~~~~~ 358 (759)
|++++|++|.++.+++.++|+.+++++||++++.. ..+.+....+.. ....+ .++.++.... .
T Consensus 88 G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~ 152 (579)
T PLN03102 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFE---------PLAREVLHLLSSEDSNLNL-PVIFIHEIDF-----P 152 (579)
T ss_pred CcEEeeccccCCHHHHHHHHhccCCeEEEEChhhH---------HHHHHHHhhccccccccCc-eEEEeccccc-----c
Confidence 99999999999999999999999999999976532 222222221100 00112 2333332110 0
Q ss_pred ccCCCCccchhhhcCCCCCCC-----CccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEE
Q 004348 359 KWQDGRDIWWQDVVPKYPTKC-----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYW 433 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l 433 (759)
.........|.+......... ......++++++|+|||||||.||||+++|++++.... .....+.+...++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~-~~~~~~~~~~~~~~l 231 (579)
T PLN03102 153 KRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTL-SAIIGWEMGTCPVYL 231 (579)
T ss_pred cCCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHH-HHHhhcCCCCCCeEE
Confidence 000001223444332221110 01123568999999999999999999999999544332 233345667778999
Q ss_pred EecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeE
Q 004348 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513 (759)
Q Consensus 434 ~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~ 513 (759)
...|+.|..++ ...+.++..|+++++... +++..+++.|+++++|++.++|+++..|++.... .....++++.
T Consensus 232 ~~~pl~h~~g~-~~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~ 304 (579)
T PLN03102 232 WTLPMFHCNGW-TFTWGTAARGGTSVCMRH----VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL--DLSPRSGPVH 304 (579)
T ss_pred ecCChhhhcch-hHHHHHHHhcCcEEeecc----CChHHHHHHHHHcCCeEEEeChHHHHHHHhCccc--ccCCcccceE
Confidence 99999998885 456778899999988754 3788899999999999999999999999876431 2234567889
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCC-C-------C----CCCCCCCcCCCCCCceEEEEC
Q 004348 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-G-------A----WPQKPGSATFPFFGVQPVIVD 581 (759)
Q Consensus 514 v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~-~-------~----~~~~~~~iG~p~~g~~~~IvD 581 (759)
+++||+++++.+.+++.+ +| +++++.||+||+++..+.... . . .....+..+.|+++ +.|+|
T Consensus 305 ~~~gg~~~~~~~~~~~~~-~g---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~ 378 (579)
T PLN03102 305 VLTGGSPPPAALVKKVQR-LG---FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKN 378 (579)
T ss_pred EEECCCCCCHHHHHHHHH-cC---CeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEec
Confidence 999999999999998865 55 789999999999864432110 0 0 00112333444444 45666
Q ss_pred C-CCcccCC--CceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEee
Q 004348 582 E-KGVEIEG--ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRI 639 (759)
Q Consensus 582 ~-~g~~vp~--g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI 639 (759)
+ .+++++. ++.|||+|+| |++++|||++++.+.+.|. +|||+|||+|+ +|++|
T Consensus 379 ~~~~~~v~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~---~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v 453 (579)
T PLN03102 379 KETQESVPRDGKTMGEIVIKG--SSIMKGYLKNPKATSEAFK---HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENI 453 (579)
T ss_pred cccccccCCCCCCceEEEEEC--cchhhhhcCChhhhHhhhc---cCceecCceEEEcCCCeEEEEeccCcEEEECCEEE
Confidence 4 5677764 4689999999 8999999999999887762 68999999988 89999
Q ss_pred CHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcH-------HHHHHHHHHHHhhcCCCccccEEEEeC
Q 004348 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-------ELRKSLVLAVRKQIGAFAAPDKIHWAP 712 (759)
Q Consensus 640 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~-------~l~~~l~~~l~~~Lp~~~vP~~iv~v~ 712 (759)
+|.|||++|.+||.|.+++|++++++..++.++|+|++.++....+ ....+|+++++++||.|++|..|++++
T Consensus 454 ~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~ 533 (579)
T PLN03102 454 SSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQ 533 (579)
T ss_pred CHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcc
Confidence 9999999999999999999999999888899999999876543211 014679999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHhcc
Q 004348 713 GLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 713 ~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+||+|++||++|++|++++...
T Consensus 534 ~~P~t~~gKi~r~~L~~~~~~~ 555 (579)
T PLN03102 534 ELPKNGNGKILKPKLRDIAKGL 555 (579)
T ss_pred cCCCCCcccccHHHHHHHHHHh
Confidence 9999999999999999987654
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=566.63 Aligned_cols=503 Identities=17% Similarity=0.168 Sum_probs=377.8
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH---cCCCCC-----------CEEEEEcCC
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD---IGVKKG-----------DAVIIYLPM 266 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~---~Gv~~g-----------d~Vai~~~~ 266 (759)
++.++|.++++ ++|+++|+++... +...+.+||+||.++++++|++|.+ +|+++| |+|+|+++|
T Consensus 62 ~l~~~l~~~~~-~~p~~~Al~~~~~-g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 62 HIMKLLLEKYK-LNNNKIAIVEHSC-GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred hHHHHHHHHHh-hcCCceeEeccCC-CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 78899999998 8999999986421 1124789999999999999999997 499999 999999999
Q ss_pred ChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEE
Q 004348 267 LMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346 (759)
Q Consensus 267 s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~ 346 (759)
++||++++|||+++|++.||+++.++.+++.++|+++++++||++... .+.+.+....+ +.++.+++
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~---------~~~l~~~~~~~----~~l~~ii~ 206 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDL---------VEGLLERKNEL----PHLKKLII 206 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHH---------HHHHHHhhccC----CCceEEEE
Confidence 999999999999999999999999999999999999999999985432 12222222222 56777887
Q ss_pred eccCcccc-----------------cccc-----------------------ccC-----------------CCCccchh
Q 004348 347 YENQSAMT-----------------RENT-----------------------KWQ-----------------DGRDIWWQ 369 (759)
Q Consensus 347 ~~~~~~~~-----------------~~~~-----------------------~~~-----------------~~~~~~~~ 369 (759)
++...... .... .+. ......|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 286 (746)
T PTZ00342 207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFD 286 (746)
T ss_pred ECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHH
Confidence 76421100 0000 000 00001122
Q ss_pred hhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH-hCCCCCcEEEEecCcchhchhhHHH
Q 004348 370 DVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCTADCGWITGHSYVT 448 (759)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~-~~l~~~d~~l~~~~l~~~~g~~~~~ 448 (759)
+.........+.....++|+|+|+|||||||.||||++||+|++.+........ ....+.|++++++|++|+++.. ..
T Consensus 287 ~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~-~~ 365 (746)
T PTZ00342 287 DMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERV-IA 365 (746)
T ss_pred HHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHH-HH
Confidence 221111111122345689999999999999999999999999655433222111 1223568999999999999875 45
Q ss_pred HHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCC------ccccc-----------------
Q 004348 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN------EYVTR----------------- 505 (759)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~------~~~~~----------------- 505 (759)
+.+++.|+++++.++ ++..+++.|+++++|++.++|.++..|..... ...++
T Consensus 366 ~~~l~~G~~i~~~~~-----~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 440 (746)
T PTZ00342 366 YLSFMLGGTINIWSK-----DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGG 440 (746)
T ss_pred HHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCC
Confidence 678999999998753 78899999999999999999999998865200 00000
Q ss_pred -----------------CCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCc
Q 004348 506 -----------------YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568 (759)
Q Consensus 506 -----------------~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~i 568 (759)
.-.++||.+++||+++++++.++|...+| +++++.||+||+++..+...+. ....+++
T Consensus 441 ~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g---~~i~~gYGlTEt~~~~~~~~~~--~~~~gsv 515 (746)
T PTZ00342 441 FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN---VNYYQGYGLTETTGPIFVQHAD--DNNTESI 515 (746)
T ss_pred cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC---CCEEEeeccCcccceeeeccCC--CCCcccc
Confidence 01268999999999999999999999887 7899999999998765543332 2467899
Q ss_pred CCCC-CCceEEEEC-CCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee------------
Q 004348 569 TFPF-FGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------ 634 (759)
Q Consensus 569 G~p~-~g~~~~IvD-~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------ 634 (759)
|+|+ ++++++|+| ++....+.+..|||+|+| |+++.|||++|+.|.+.|.. +|||+|||+|+
T Consensus 516 G~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrG--p~v~~GY~~~pe~T~~~f~~--dGW~~TGDig~~d~dG~l~i~gR 591 (746)
T PTZ00342 516 GGPISPNTKYKVRTWETYKATDTLPKGELLIKS--DSIFSGYFLEKEQTKNAFTE--DGYFKTGDIVQINKNGSLTFLDR 591 (746)
T ss_pred cCcCCCcEEEEEecccccccCCCCCceEEEEec--CcccccccCChhhhhhhcCc--CCcccCCcEEEECCCCeEEEEcc
Confidence 9998 999999998 444444444579999999 89999999999999998853 79999999998
Q ss_pred --------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCC----------------CC---CcH--
Q 004348 635 --------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG----------------VP---YSE-- 685 (759)
Q Consensus 635 --------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~----------------~~---~~~-- 685 (759)
+|++|+|.|||++|.+||.|.+|+|++.. ....++|+|++... .. ..+
T Consensus 592 ~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~ 668 (746)
T PTZ00342 592 SKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKL 668 (746)
T ss_pred CCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHh
Confidence 69999999999999999999999999852 23468999987641 10 000
Q ss_pred --------HHHHHHHHHH-----HhhcCCCccccEEEEeCC-C----CCCCCCcccHHHHHHHHhcccC
Q 004348 686 --------ELRKSLVLAV-----RKQIGAFAAPDKIHWAPG-L----PKTRSGKIMRRILRKIASRQLD 736 (759)
Q Consensus 686 --------~l~~~l~~~l-----~~~Lp~~~vP~~iv~v~~-l----P~T~~GKvdR~~L~~~~~~~~~ 736 (759)
++.+.+++.+ +..|+.|.++++|.++++ + -+||+.|+.|+.+.+.|+..++
T Consensus 669 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~ 737 (746)
T PTZ00342 669 TDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFID 737 (746)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHH
Confidence 1122233222 235999999999998863 3 2899999999999999885544
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-61 Score=556.56 Aligned_cols=496 Identities=24% Similarity=0.329 Sum_probs=391.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|++++. .+|+++|+++. ++.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 25 ~~~~~~~~~a~-~~p~~~a~~~~------~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (563)
T PRK06710 25 PLHKYVEQMAS-RYPEKKALHFL------GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLA 97 (563)
T ss_pred cHHHHHHHHHH-HCCCceEEEec------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 57899999888 89999999986 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccc--cccc-
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM--TREN- 357 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~--~~~~- 357 (759)
|++++|++|.++.+++.++++.++++++++++...... ...... .....+++....... +...
T Consensus 98 G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 163 (563)
T PRK06710 98 GGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRV---------TNVQSA-----TKIEHVIVTRIADFLPFPKNLL 163 (563)
T ss_pred CeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhh---------hccchh-----hccceeEEeccccccccccccc
Confidence 99999999999999999999999999999987542110 000000 011122211100000 0000
Q ss_pred ------------cccC-CCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHh
Q 004348 358 ------------TKWQ-DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424 (759)
Q Consensus 358 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~ 424 (759)
.... ......|.................++++++|+|||||||.||||+++|++++.+........+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~ 243 (563)
T PRK06710 164 YPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLY 243 (563)
T ss_pred cchhhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhcc
Confidence 0000 000001221111111111111123578999999999999999999999996544333333334
Q ss_pred CCCC-CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccc
Q 004348 425 DYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503 (759)
Q Consensus 425 ~l~~-~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~ 503 (759)
+... ++++++..|+.|..++...++.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|++... .
T Consensus 244 ~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~ 317 (563)
T PRK06710 244 NCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK----FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL--L 317 (563)
T ss_pred CCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC----CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc--c
Confidence 5444 45888999999988876667788999999999753 488999999999999999999999999987543 2
Q ss_pred ccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-C
Q 004348 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-E 582 (759)
Q Consensus 504 ~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~ 582 (759)
...+++++|.+++||+++++++++++.+.++ +++++.||+||++......... ....++++|+|++++.++|+| +
T Consensus 318 ~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~ 393 (563)
T PRK06710 318 KEYDISSIRACISGSAPLPVEVQEKFETVTG---GKLVEGYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLE 393 (563)
T ss_pred ccCChhhhhheeeCCCcCCHHHHHHHHHhhC---CCEecccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECC
Confidence 2346689999999999999999999998886 7899999999998754432211 123457899999999999998 5
Q ss_pred CCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHH
Q 004348 583 KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAE 643 (759)
Q Consensus 583 ~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~e 643 (759)
++++++.|..|||+|+| +.+++||+++++.+...+ .+|||+|||+++ +|+||+|.|
T Consensus 394 ~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~e 468 (563)
T PRK06710 394 TGEALPPGEIGEIVVKG--PQIMKGYWNKPEETAAVL---QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPRE 468 (563)
T ss_pred CCccCCCCCceEEEEec--CccchhhhCChHHHhhhc---ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHH
Confidence 78999999999999999 899999999999887655 278999999987 899999999
Q ss_pred HHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCccc
Q 004348 644 VESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723 (759)
Q Consensus 644 IE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvd 723 (759)
||++|.+||.|.+++|++++++..++.++++|+.+++...+ .++++++++++|+.|++|..|+++++||+|++||++
T Consensus 469 iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~ 545 (563)
T PRK06710 469 VEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS---EEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKIL 545 (563)
T ss_pred HHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCCcEEEEcccCCCCccchhh
Confidence 99999999999999999999888889999999988765443 578999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 004348 724 RRILRKIASRQL 735 (759)
Q Consensus 724 R~~L~~~~~~~~ 735 (759)
|++|+++...+.
T Consensus 546 r~~L~~~~~~~~ 557 (563)
T PRK06710 546 RRVLIEEEKRKN 557 (563)
T ss_pred HHHHHHHHhhcC
Confidence 999999887653
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=551.06 Aligned_cols=493 Identities=22% Similarity=0.294 Sum_probs=393.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||+++++...+ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~~~~~~~~~a~-~~~~~~~~~~~~~--~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~ 87 (542)
T PRK06018 11 LCHRIIDHAAR-IHGNREVVTRSVE--GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI 87 (542)
T ss_pred CHHHHHHHHHH-hCCCceEEEeecc--CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence 57899999998 8999999985321 23578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++..+++++++++++++..+. +.+.+..... +.+..+++..+..... ...
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~- 151 (542)
T PRK06018 88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFV---------PILEKIADKL----PSVERYVVLTDAAHMP--QTT- 151 (542)
T ss_pred CeEeeccccccCHHHHHHHHhccCCCEEEEccccH---------HHHHHHHhhC----CCccEEEEeccccccc--ccC-
Confidence 99999999999999999999999999999976542 2233332222 3445555443221100 000
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHH-HHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~-~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
......|.+.+.............++++++|+|||||||.||||+++|++.+.. ........++++.+|+++...|++
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 230 (542)
T PRK06018 152 -LKNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLF 230 (542)
T ss_pred -ccccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHH
Confidence 001223444443322222223456788999999999999999999999974322 233344567889999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++. ..+.++..|+++++... .+++..+++.++++++|++.++|++++.|.+.... ...++++||.+++|||
T Consensus 231 h~~~~~-~~~~~~~~g~~~v~~~~---~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~G~ 304 (542)
T PRK06018 231 HANSWG-IAFSAPSMGTKLVMPGA---KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEK--EGLKLPHLKMVVCGGS 304 (542)
T ss_pred HHhhhH-HHHhhhhcCceEEccCc---CCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccc--cCCCcccceEEEEcCC
Confidence 988753 45678899999988542 24889999999999999999999999999876432 2346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccC-CCCC--------CCCCCCcCCCCCCceEEEECCCCcccCCC
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGAW--------PQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~-~~~~--------~~~~~~iG~p~~g~~~~IvD~~g~~vp~g 590 (759)
+++++++++|.+ ++ +++++.||+||++.+.+... .... .....++|+|++|++++|+|++++++|.+
T Consensus 305 ~l~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~ 380 (542)
T PRK06018 305 AMPRSMIKAFED-MG---VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWD 380 (542)
T ss_pred CCCHHHHHHHHH-hC---CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCC
Confidence 999999999999 76 78999999999987544321 1100 01235789999999999999999988753
Q ss_pred --ceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 591 --CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 591 --~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
..|||+|+| ++++.|||++... . .+.+|||+|||+++ +|++|++.|||++|.
T Consensus 381 ~~~~Gel~i~g--~~~~~gy~~~~~~----~-~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~ 453 (542)
T PRK06018 381 GKTFGRLKVRG--PAVAAAYYRVDGE----I-LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV 453 (542)
T ss_pred CCceeEEEEec--CCcchhhhcCccc----E-ecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH
Confidence 689999999 8999999984321 1 22478999999987 899999999999999
Q ss_pred cCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 650 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
+||+|.+|+|++.+++..++.+.++|++.++...+ .++++++++++++.|++|..|+++++||+|++||++|++|++
T Consensus 454 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~ 530 (542)
T PRK06018 454 GHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETAT---REEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALRE 530 (542)
T ss_pred hCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCC---HHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHH
Confidence 99999999999999887788999999988765544 568999999999999999999999999999999999999999
Q ss_pred HHhc
Q 004348 730 IASR 733 (759)
Q Consensus 730 ~~~~ 733 (759)
.+.+
T Consensus 531 ~~~~ 534 (542)
T PRK06018 531 QFKD 534 (542)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=552.46 Aligned_cols=503 Identities=23% Similarity=0.304 Sum_probs=396.7
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~i 271 (759)
.||+.... ++.+.|+++++ .+||++|+.+. ++.+||.||+++++++|++|.++|+++|++|+++++|+++++
T Consensus 26 ~~~~~~~~-~l~~~l~~~a~-~~p~~~al~~~------~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~ 97 (567)
T PRK06178 26 PEYPHGER-PLTEYLRAWAR-ERPQRPAIIFY------GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH 97 (567)
T ss_pred CCCCcCcc-cHHHHHHHHHH-HCCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHH
Confidence 46666654 57888999988 89999999976 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCc
Q 004348 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (759)
Q Consensus 272 va~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~ 351 (759)
++++||+++|++++|++|.++.+++.+++++++++++++++... +.+.+..+. ..+..+++.....
T Consensus 98 ~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~l~~~~~~-----~~~~~i~~~~~~~ 163 (567)
T PRK06178 98 IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA---------PVVEQVRAE-----TSLRHVIVTSLAD 163 (567)
T ss_pred HHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHHHhhcc-----CCcceEEEecccc
Confidence 99999999999999999999999999999999999999977532 222222111 1233333322111
Q ss_pred cccccc-cccCC------CCccchhhhcC---CCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH
Q 004348 352 AMTREN-TKWQD------GRDIWWQDVVP---KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (759)
Q Consensus 352 ~~~~~~-~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (759)
...... ..... .....|.+... ..+.........++++++|+|||||||.||||+++|++++.+......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~ 243 (567)
T PRK06178 164 VLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYA 243 (567)
T ss_pred ccccccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHH
Confidence 000000 00000 00011111111 111111223356789999999999999999999999996654444333
Q ss_pred HHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc
Q 004348 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (759)
Q Consensus 422 ~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~ 501 (759)
....+.++|+++..+|++|..|+...++.+|.+|+++++.++ +++..+++.|+++++|.+.++|..+..|.+...
T Consensus 244 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~- 318 (567)
T PRK06178 244 VAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLAR----WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR- 318 (567)
T ss_pred HhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-
Confidence 446778899999999999999877778889999999999864 489999999999999999999999998887643
Q ss_pred ccccCCCCCeeEEEE--eCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCC--CC---CCCCCCCcCCCCCC
Q 004348 502 YVTRYSRKSLRVLGS--VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GA---WPQKPGSATFPFFG 574 (759)
Q Consensus 502 ~~~~~~l~sLr~v~~--gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~--~~---~~~~~~~iG~p~~g 574 (759)
....+++++|.+.. .|++++++++++|.+.+|. ..+.+.||+||++........ .. ....++++|+|++|
T Consensus 319 -~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g 395 (567)
T PRK06178 319 -FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGS--VLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPG 395 (567)
T ss_pred -CCCCCcchheeeeeccccccCCHHHHHHHHHHhCC--cccccccccccccccceeccccccCccccccCCcccccccCC
Confidence 23346678887654 4599999999999999872 334468999999765432211 00 11345679999999
Q ss_pred ceEEEEC-CCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------
Q 004348 575 VQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------- 634 (759)
Q Consensus 575 ~~~~IvD-~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------- 634 (759)
++++|+| +++++++.|+.|||+|+| +.++.||+++++.+...|. +|||+|||+++
T Consensus 396 ~~v~v~d~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~~---dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~ 470 (567)
T PRK06178 396 TEFKICDFETGELLPLGAEGEIVVRT--PSLLKGYWNKPEATAEALR---DGWLHTGDIGKIDEQGFLHYLGRRKEMLKV 470 (567)
T ss_pred cEEEEEcCCCCCcCCCCCceEEEEEC--CcccccccCChhhhhhccc---CCceeecceEEEecCCeEEEEecccccEEE
Confidence 9999999 679999999999999999 8999999999988877653 68999999988
Q ss_pred ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCC
Q 004348 635 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 714 (759)
Q Consensus 635 ~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~l 714 (759)
+|++|+|.|||++|.++|+|.+++|++.+++..++.++++|+++++...+ .++|+++++++++.|++|. +++++++
T Consensus 471 ~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~-i~~v~~i 546 (567)
T PRK06178 471 NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLT---AAALQAWCRENMAVYKVPE-IRIVDAL 546 (567)
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCC---HHHHHHHHHhcCcccCCce-EEEeccC
Confidence 89999999999999999999999999998887788999999987655433 5789999999999999996 8889999
Q ss_pred CCCCCCcccHHHHHHHHhc
Q 004348 715 PKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 715 P~T~~GKvdR~~L~~~~~~ 733 (759)
|+|++||++|++|++++++
T Consensus 547 P~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 547 PMTATGKVRKQDLQALAEE 565 (567)
T ss_pred CCCCccceeHHHHHHHHHh
Confidence 9999999999999998864
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=544.95 Aligned_cols=476 Identities=18% Similarity=0.244 Sum_probs=393.8
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.++|++++. .+|+++|+... ++.+||+||.++++++|..|.++|+++|++|+++++++.++++++|||+++|
T Consensus 4 ~~~~l~~~a~-~~p~~~~~~~~------~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G 76 (503)
T PRK04813 4 IIETIEEFAQ-TQPDFPAYDYL------GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG 76 (503)
T ss_pred HHHHHHHHHH-hCCCceEEEeC------CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 5688888888 89999999876 5789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (759)
++++|+++.++.+++..+++.++++++++++...... ..+. .+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~------------ 123 (503)
T PRK04813 77 HAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------------------LGIP-VITLDE------------ 123 (503)
T ss_pred CEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------------------cCCc-EEehHH------------
Confidence 9999999999999999999999999999976541100 0000 111100
Q ss_pred CCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchh
Q 004348 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (759)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~ 441 (759)
+.+...............++++++++|||||||.||||.++|++++. ...+....+++..+++++...|++|.
T Consensus 124 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 124 ------LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVS-FTNWMLEDFALPEGPQFLNQAPYSFD 196 (503)
T ss_pred ------hhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHH-HHHHHHHHcCCCcCceeeecCCcchh
Confidence 00000000011112234678899999999999999999999999554 44455566889999999999999998
Q ss_pred chhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCC
Q 004348 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (759)
Q Consensus 442 ~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (759)
.+ .+.++.+|..|+++++.+... ..++..+++.++++++|++.++|++++.+..... ....+++++|.++++|+++
T Consensus 197 ~~-~~~~~~~l~~g~~~v~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~--~~~~~~~~l~~i~~~G~~l 272 (503)
T PRK04813 197 LS-VMDLYPTLASGGTLVALPKDM-TANFKQLFETLPQLPINVWVSTPSFADMCLLDPS--FNEEHLPNLTHFLFCGEEL 272 (503)
T ss_pred Hh-HHHHHHHHhcCCEEEEcChhh-hcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc--cCcccCCCceEEEEecCcC
Confidence 87 467889999999999987643 3488999999999999999999999988765432 2334678999999999999
Q ss_pred CHHHHHHHHHHhCCCCccEeeeeccccccceecccC-CC--CCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEe
Q 004348 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PG--AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~-~~--~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++.+++++.+.++ ++++++.||+||++...+... .. .......++|+|+++++++|+|+++.+++.|+.|||+++
T Consensus 273 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~ 350 (503)
T PRK04813 273 PHKTAKKLLERFP--SATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVIS 350 (503)
T ss_pred CHHHHHHHHHHCC--CceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEe
Confidence 9999999999986 478999999999976543211 11 112345679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcc-cCCcEEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~-~~~g~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| ++++.||+++++.+...|+. ...+||+|||+++ +|++|+|.|||++|.+||+|.+++|
T Consensus 351 ~--~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 428 (503)
T PRK04813 351 G--PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVV 428 (503)
T ss_pred c--cccccccCCChhHhHHhhccCCCceeEECCceEEeeCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEE
Confidence 9 89999999999999888865 2335999999887 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCC-CCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
++.++...++.++++|++.++. ....++.++++++++++|+.|++|..|+++++||+|+|||++|++|++.++
T Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 429 VPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred EEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 9988777778999999987642 222345678999999999999999999999999999999999999998875
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=549.25 Aligned_cols=491 Identities=23% Similarity=0.319 Sum_probs=389.5
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
+++.++|+++++ .+|+++|+++. ++.+||.||.++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 21 ~~~~~~~~~~~~-~~p~~~a~~~~------~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~ 93 (541)
T TIGR03205 21 GTLPDLLSKAAA-DYGPRPALEFR------DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALK 93 (541)
T ss_pred CCHHHHHHHHHH-HcCCCceEEEC------CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 368899999888 89999999976 57899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcc--ccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA--MTREN 357 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~--~~~~~ 357 (759)
+|++++|++|.++.+++.+++++++++++|+++... ....+.+.... ..+..+++...... .....
T Consensus 94 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 161 (541)
T TIGR03205 94 AGARVVHLSPLDGERALSHKLSDSGARLLITSDLAA-------LLPMALKFLEK-----GLLDRLIVCEDDNWGKVGTPQ 161 (541)
T ss_pred cCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchh-------hhHHHHHhhhc-----ccceEEEEecccccccccccc
Confidence 999999999999999999999999999999875321 11111111111 11233333332110 00000
Q ss_pred cc-cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHH-----HhCCCCCcE
Q 004348 358 TK-WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-----AFDYKPSDV 431 (759)
Q Consensus 358 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~-----~~~l~~~d~ 431 (759)
.. ........|.+.+.............++++++|+|||||||.||||+++|+++... ...... .+.....++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 240 (541)
T TIGR03205 162 APIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSA-VSIYDVWGKPSRATRGDVER 240 (541)
T ss_pred cccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHH-HHHHHhhcccccccCCCCce
Confidence 00 00112233444443222222223456789999999999999999999999995432 222111 112233578
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCe
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (759)
+++..+++|..++...++.++..|+++++.+. .++..+++.|+++++|++..+|+++..|++... ....+++++
T Consensus 241 ~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l 314 (541)
T TIGR03205 241 VICVLPLFHIYALTVILLRSLRRGDLISLHQR----FDVAAVFRDIEEKRATVFPGVPTMWIALANDPS--LEKRDLSSL 314 (541)
T ss_pred EEEeccHHHHHHHHHHHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--ccccCcccc
Confidence 99999999988877778899999999888743 489999999999999999999999999886532 233467899
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEE--CCCCcccCC
Q 004348 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV--DEKGVEIEG 589 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~Iv--D~~g~~vp~ 589 (759)
|.+++||+++++++.+++.+.++ +++++.||+||++...+..... ....++++|+|++++.++|+ |+++++++.
T Consensus 315 ~~i~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~ 390 (541)
T TIGR03205 315 ATIGSGGAPLPVEVANFFERKTG---LKLKSGWGMTETCSPGTGHPPE-GPDKPGSIGLMLPGIELDVVSLDDPTKVLPP 390 (541)
T ss_pred ceEEEccccCCHHHHHHHHHHhC---CCeecccccccCCcccccCCCC-CCCCCCCcceeccCceeEEEecCCCCccCCC
Confidence 99999999999999999988876 7899999999998765533221 12346789999999998875 678899999
Q ss_pred CceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhc
Q 004348 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVS 650 (759)
Q Consensus 590 g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~ 650 (759)
|+.|||+|+| ++++.||+++++.+.+.|. ++||+|||+++ +|+||+|.|||++|.+
T Consensus 391 g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~ 465 (541)
T TIGR03205 391 GEVGELRIRG--PNVTRGYWNRPEESAEAFV---GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYE 465 (541)
T ss_pred CCeeEEEEec--CCccccccCChhhhHhhhc---cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHh
Confidence 9999999999 8999999999999887764 57999999987 8999999999999999
Q ss_pred CCccceEEEEeEecCCCCeEEEEEEEEcCCCC-CcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 651 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP-YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 651 ~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~-~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
|+.|.+++|++++++..++.++++++++++.. .+ .++|+++++++|++|++|..|+++++||+|++||++|++|+
T Consensus 466 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 466 HPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFS---LDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred CCCeeeEEEEecCCcccCceEEEEEEECCCCCcCC---HHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 99999999999998877889999999876542 22 57899999999999999999999999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=545.57 Aligned_cols=466 Identities=22% Similarity=0.265 Sum_probs=379.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|++++ .++++|+++. ++.+||.||.++++++|++|+++ |++++++|+++++|++++++++|||++
T Consensus 6 ~~~~~l~~~a---~~~~~a~~~~------~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~ 76 (529)
T PRK07867 6 TVAELLLPLA---EDDDRGLYFE------DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAAL 76 (529)
T ss_pred cHHHHHHHhc---ccCCceEEEC------CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4778887765 3688999876 57899999999999999999997 899999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|+++.++.+++.+++++++++++|+++... .. ++.+. ..+. ++..+.
T Consensus 77 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~----~~~~~---~~~~-~~~~~~---------- 129 (529)
T PRK07867 77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHA---------EL----LDGLD---PGVR-VINVDS---------- 129 (529)
T ss_pred cCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHH---------HH----HHhhc---cCce-EEEecc----------
Confidence 999999999999999999999999999999987642 11 11110 1111 222111
Q ss_pred cCCCCccchhhhcCCC-CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCc
Q 004348 360 WQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l 438 (759)
..|.+.+... ..........++++++|+|||||||.||||+++|+++. .........+++.++|+++...|+
T Consensus 130 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~-~~~~~~~~~~~~~~~d~~l~~~pl 202 (529)
T PRK07867 130 ------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA-SAGVMLAQRFGLGPDDVCYVSMPL 202 (529)
T ss_pred ------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHH-HHHHHHHHhhCCCcccEEEEecch
Confidence 1133322211 11112234567899999999999999999999999954 445556667889999999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
+|..++...++.+|..|+++++.+. +++..+++.++++++|++.++|+.+..++...... ....+++|. ++||
T Consensus 203 ~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~--~~~~~~lr~-~~gg 275 (529)
T PRK07867 203 FHSNAVMAGWAVALAAGASIALRRK----FSASGFLPDVRRYGATYANYVGKPLSYVLATPERP--DDADNPLRI-VYGN 275 (529)
T ss_pred hHHHHHHHHHHHHHhcCceEEecCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc--cccccceEE-EecC
Confidence 9999877777889999999998753 48999999999999999999999999988764321 123357884 5688
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCc------
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGEC------ 591 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~------ 591 (759)
+.+++.. ++|.+.+| +++++.||+||++...... + ....+++|.|+++ ++|+| +++++++.|+
T Consensus 276 ~~~~~~~-~~~~~~~g---~~l~~~YG~TE~~~~~~~~-~---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~ 345 (529)
T PRK07867 276 EGAPGDI-ARFARRFG---CVVVDGFGSTEGGVAITRT-P---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRL 345 (529)
T ss_pred CCChHHH-HHHHHHhC---CcEEEeecccccccccccC-C---CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccc
Confidence 8888764 66777776 7899999999998654321 1 1245679999999 67777 4788999988
Q ss_pred ------eEEEEE-ecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHH
Q 004348 592 ------SGYLCI-KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVE 645 (759)
Q Consensus 592 ------~GEL~I-~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE 645 (759)
.|||++ +| ++++.||+++++.+...| .+|||+|||+++ +|+||+|.|||
T Consensus 346 ~~~~~~~Gel~i~~g--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE 420 (529)
T PRK07867 346 LNADEAIGELVNTAG--PGGFEGYYNDPEADAERM---RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIE 420 (529)
T ss_pred cccCCcceEEEEecC--CcccccccCChHhhhhhh---cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHH
Confidence 899999 99 899999999999887765 268999999988 89999999999
Q ss_pred HHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh--cCCCccccEEEEeCCCCCCCCCccc
Q 004348 646 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ--IGAFAAPDKIHWAPGLPKTRSGKIM 723 (759)
Q Consensus 646 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~--Lp~~~vP~~iv~v~~lP~T~~GKvd 723 (759)
++|.+||+|.+|+|++++++..++.++++|++.++...+ .++++++++++ |++|++|..|+++++||+|++||++
T Consensus 421 ~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~ 497 (529)
T PRK07867 421 RILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD---PDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVL 497 (529)
T ss_pred HHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC---HHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCccee
Confidence 999999999999999999988899999999998765444 56788888775 9999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 004348 724 RRILRKIASRQ 734 (759)
Q Consensus 724 R~~L~~~~~~~ 734 (759)
|+.|+++....
T Consensus 498 r~~L~~~~~~~ 508 (529)
T PRK07867 498 KRQLSAEGVDC 508 (529)
T ss_pred HHHHHHhcCCC
Confidence 99999987644
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=549.65 Aligned_cols=493 Identities=21% Similarity=0.328 Sum_probs=391.1
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
+++.++|.++++ .+|+++|+++. ++.+||+||+++++++|++|.+.|+++||+|+|+++|++++++++|||++
T Consensus 23 ~~i~~~l~~~a~-~~p~~~a~~~~------~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~ 95 (557)
T PRK07059 23 PSLADLLEESFR-QYADRPAFICM------GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLR 95 (557)
T ss_pred CCHHHHHHHHHH-HcCCCceEEEc------CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 468899999998 89999999986 67899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc-----
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT----- 354 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~----- 354 (759)
+|++++|++|.++.+++.+++++++++++|+++... ..+.+.... .....+++........
T Consensus 96 ~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 161 (557)
T PRK07059 96 AGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFA---------TTVQQVLAK-----TAVKHVVVASMGDLLGFKGHI 161 (557)
T ss_pred cCeEEeccCcccCHHHHHHHHHccCceEEEEchhhH---------HHHHHhhcc-----cCCceeEEecccccccccccc
Confidence 999999999999999999999999999999876532 112111111 1222232221100000
Q ss_pred ---------ccccccCCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---
Q 004348 355 ---------RENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--- 421 (759)
Q Consensus 355 ---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~--- 421 (759)
.....+.......|.+.+.... .........++++|+|+|||||||.||||+++|++++.+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~ 241 (557)
T PRK07059 162 VNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQ 241 (557)
T ss_pred cccccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhc
Confidence 0000011112233333332211 112223456889999999999999999999999996544322111
Q ss_pred HHhCCC---CCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhc
Q 004348 422 YAFDYK---PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (759)
Q Consensus 422 ~~~~l~---~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~ 498 (759)
..+... ....+++..|+.|.+++....+.++..|++.++.+.. .++..+++.++++++|.+.++|+++..|...
T Consensus 242 ~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 318 (557)
T PRK07059 242 PAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNP---RDIPGFIKELKKYQVHIFPAVNTLYNALLNN 318 (557)
T ss_pred ccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCC---cCHHHHHHHHHHhCCeeeecCHHHHHHHHcC
Confidence 111111 2346788899999887666777888999998887642 3788999999999999999999999999876
Q ss_pred CCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEE
Q 004348 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (759)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~ 578 (759)
.. ....+++++|.++.||+++++.+.++|.+.++ +++++.||+||++.+++..... ....++++|+|++|+.++
T Consensus 319 ~~--~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~ 392 (557)
T PRK07059 319 PD--FDKLDFSKLIVANGGGMAVQRPVAERWLEMTG---CPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVS 392 (557)
T ss_pred cC--cCcCCchhheEEEeccccCCHHHHHHHHHHhC---CCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEE
Confidence 43 23446789999999999999999999999887 7899999999998765433221 123467899999999999
Q ss_pred EECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEee
Q 004348 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRI 639 (759)
Q Consensus 579 IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI 639 (759)
|+|++++++|.|+.|||+|+| +.++.||+++++.+...|. .+|||+|||+++ +|++|
T Consensus 393 i~d~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i 468 (557)
T PRK07059 393 IRDDDGNDLPLGEPGEICIRG--PQVMAGYWNRPDETAKVMT--ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNV 468 (557)
T ss_pred EECCCCCCCCCCCceEEEEeC--CccchhhhcCHHHHhhhcc--cCCceecCcEEEEcCCCcEEEecccccceEECCEEE
Confidence 999999999999999999999 8999999999998877664 378999999987 89999
Q ss_pred CHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCC
Q 004348 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719 (759)
Q Consensus 640 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~ 719 (759)
+|.|||++|.+||+|.+++|+++++...++.++++|+..+.. .+ .++++++++++|+.|++|..+++++++|+|++
T Consensus 469 ~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~-~~---~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~ 544 (557)
T PRK07059 469 YPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA-LT---EEDVKAFCKERLTNYKRPKFVEFRTELPKTNV 544 (557)
T ss_pred cHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC-CC---HHHHHHHHHHhcccccCCcEEEEeccCCCCcc
Confidence 999999999999999999999999888889999999876532 22 46899999999999999999999999999999
Q ss_pred CcccHHHHHHH
Q 004348 720 GKIMRRILRKI 730 (759)
Q Consensus 720 GKvdR~~L~~~ 730 (759)
||++|+.|+++
T Consensus 545 GK~~r~~L~~~ 555 (557)
T PRK07059 545 GKILRRELRDG 555 (557)
T ss_pred cceeHHHHHhh
Confidence 99999999864
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=557.10 Aligned_cols=482 Identities=23% Similarity=0.308 Sum_probs=376.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|.++++ ++||++|++++ .+.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 38 tl~~~l~~~a~-~~p~~~Ai~~~------~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~ 110 (600)
T PRK08279 38 SLGDVFEEAAA-RHPDRPALLFE------DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKL 110 (600)
T ss_pred cHHHHHHHHHH-hCCCCcEEEeC------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 68899999998 89999999986 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++|+++... ..+.+..... .....++..+.... .
T Consensus 111 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~------~- 170 (600)
T PRK08279 111 GAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELV---------EAFEEARADL----ARPPRLWVAGGDTL------D- 170 (600)
T ss_pred CcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHhhhh----cccceEEEecCccc------c-
Confidence 99999999999999999999999999999976532 2222222221 11122222211100 0
Q ss_pred CCCCccchhhhc---CCCCC--CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEe
Q 004348 361 QDGRDIWWQDVV---PKYPT--KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435 (759)
Q Consensus 361 ~~~~~~~~~~~~---~~~~~--~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~ 435 (759)
....|.+.. ...+. ........++++++|+|||||||.||||+++|++++ +........+++.++|++++.
T Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~l~~~d~~l~~ 246 (600)
T PRK08279 171 ---DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWL-KAMGGFGGLLRLTPDDVLYCC 246 (600)
T ss_pred ---ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHH-HHHHHHHHhcCCCCCcEEEEe
Confidence 011122211 11111 111233467899999999999999999999999955 445555666899999999999
Q ss_pred cCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEE
Q 004348 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515 (759)
Q Consensus 436 ~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~ 515 (759)
+|++|.+++...++.+|..|+++++.+. +++..+++.++++++|++.++|++++.|+...... .....++|.+
T Consensus 247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~--~~~~~~l~~~- 319 (600)
T PRK08279 247 LPLYHNTGGTVAWSSVLAAGATLALRRK----FSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP--TDRDHRLRLM- 319 (600)
T ss_pred cCchhhhhHHHHHHHHHhcCcEEEEcCC----CCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc--cccCcceeEE-
Confidence 9999999987777788889999888653 48899999999999999999999999988764321 2234567754
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCC----CceE---------EEECC
Q 004348 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF----GVQP---------VIVDE 582 (759)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~----g~~~---------~IvD~ 582 (759)
+|+.++++++++|.+.++. ..++|.||+||++...+.. ....+++|++.+ +..+ .|.|.
T Consensus 320 -~g~~l~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~ 391 (600)
T PRK08279 320 -IGNGLRPDIWDEFQQRFGI--PRILEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDA 391 (600)
T ss_pred -ecCCCCHHHHHHHHHHhCc--ceeeeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCC
Confidence 4888999999999999983 4699999999998643321 123456676655 3322 23333
Q ss_pred CC--cccCCCceEEEE--EecCCCcccccccCChhhHHhhhcc----cCCcEEEeCCeee-------------------c
Q 004348 583 KG--VEIEGECSGYLC--IKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCS-------------------S 635 (759)
Q Consensus 583 ~g--~~vp~g~~GEL~--I~g~~~~v~~GY~~~~e~~~~~~~~----~~~g~y~TGDl~~-------------------~ 635 (759)
++ .+++.|+.|||+ |+| ++++.|| ++++.+...|+. +.++||+|||+|+ +
T Consensus 392 ~~~~~~~~~g~~Gel~~~i~~--~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~ 468 (600)
T PRK08279 392 DGRCIKVKPGEVGLLIGRITD--RGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWK 468 (600)
T ss_pred CCccccCCCCCceeEEEEecC--ccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEEC
Confidence 33 357889999998 678 8999999 888888777643 3467999999998 8
Q ss_pred cEeeCHHHHHHHHhcCCccceEEEEeEecCC-CCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCC
Q 004348 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEV-KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 714 (759)
Q Consensus 636 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~-~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~l 714 (759)
|+||+|.|||++|.+||+|.+|+|++++++. .+...+++++..++...+ .++|+++|+++||.|++|..|+++++|
T Consensus 469 G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~l 545 (600)
T PRK08279 469 GENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFD---LAALAAHLYERLPAYAVPLFVRLVPEL 545 (600)
T ss_pred CcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCC---HHHHHHHHHhhCccccCCeEEEeecCC
Confidence 9999999999999999999999999998764 344556666666443333 578999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHhcc
Q 004348 715 PKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 715 P~T~~GKvdR~~L~~~~~~~ 734 (759)
|+|++||++|++|++++...
T Consensus 546 P~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 546 ETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred CCCcchhhhHHHHhhcCCCc
Confidence 99999999999999887655
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-60 Score=542.70 Aligned_cols=482 Identities=23% Similarity=0.325 Sum_probs=388.7
Q ss_pred hcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEec
Q 004348 208 RNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287 (759)
Q Consensus 208 ~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpl 287 (759)
.+++ .+||++|+++.. .++.+||.||.++++++|++|++.|+++|++|++++++++++++++|||+++|++++|+
T Consensus 5 ~~a~-~~p~~~a~~~~~----~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l 79 (511)
T PRK13391 5 IHAQ-TTPDKPAVIMAS----TGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCV 79 (511)
T ss_pred hhHh-hCCCceEEEecC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecc
Confidence 4555 799999999752 25789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccc
Q 004348 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIW 367 (759)
Q Consensus 288 dp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 367 (759)
++.++.+++.+++++++++++++++... ..+.+....+ ......+.+..... ......
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~ 137 (511)
T PRK13391 80 NSHLTPAEAAYIVDDSGARALITSAAKL---------DVARALLKQC----PGVRHRLVLDGDGE---------LEGFVG 137 (511)
T ss_pred ccccCHHHHHHHHhccCCcEEEEchhhH---------HHHHHHHhcC----CCceEEEEecCCCC---------Cccccc
Confidence 9999999999999999999999986532 2222222222 23333343332110 001122
Q ss_pred hhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEc--cchHHH--HHHHHHHHHhCCCCCcEEEEecCcchhch
Q 004348 368 WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT--TGGYMV--HTATTFKYAFDYKPSDVYWCTADCGWITG 443 (759)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~t--h~~~l~--~~~~~~~~~~~l~~~d~~l~~~~l~~~~g 443 (759)
|.+.....+. ......++.++|+|||||||.||||+++ |.+... .........+++.+++++++..|++|..+
T Consensus 138 ~~~~~~~~~~---~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~ 214 (511)
T PRK13391 138 YAEAVAGLPA---TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAP 214 (511)
T ss_pred HHHHhcCCCC---CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHH
Confidence 3333222111 1112344679999999999999999964 555321 22233445677888999999999999887
Q ss_pred hhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCH
Q 004348 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (759)
Q Consensus 444 ~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (759)
+ ...+.++..|+++++.+. +++..+++.++++++|++.++|+++..+.+.........+++++|.+++||+++++
T Consensus 215 ~-~~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~ 289 (511)
T PRK13391 215 Q-RAVMLVIRLGGTVIVMEH----FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPP 289 (511)
T ss_pred H-HHHHHHHHcCceEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCH
Confidence 5 456778999999999753 48999999999999999999999999888764332334568899999999999999
Q ss_pred HHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCc
Q 004348 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPG 603 (759)
Q Consensus 524 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~ 603 (759)
++++++.+.+| ..+++.||+||++.+....... ....++++|+|+++ .++|+|+++++++.|+.|||+++| +
T Consensus 290 ~~~~~~~~~~g---~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel~~~g--~- 361 (511)
T PRK13391 290 QVKEQMIDWWG---PIIHEYYAATEGLGFTACDSEE-WLAHPGTVGRAMFG-DLHILDDDGAELPPGEPGTIWFEG--G- 361 (511)
T ss_pred HHHHHHHHHcC---CceeeeeccccccceEEecCcc-ccccCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEec--C-
Confidence 99999999887 6799999999998765432211 12456789999999 699999999999999999999999 7
Q ss_pred ccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEec
Q 004348 604 AFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEH 664 (759)
Q Consensus 604 v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~ 664 (759)
++.||+++++.+...+... ++||+|||+|+ +|++|++.|||++|.+||.|.+|+|+++++
T Consensus 362 ~~~gy~~~~~~~~~~~~~~-~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~ 440 (511)
T PRK13391 362 RPFEYLNDPAKTAEARHPD-GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPN 440 (511)
T ss_pred cceEEcCChhHhHHhhccC-CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCC
Confidence 8899999999988876542 58999999987 899999999999999999999999999988
Q ss_pred CCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 665 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 665 ~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+..++.+++++++.++...++.+.++|+++++++||.|++|..|++++++|+|++||++|+.|++.+..
T Consensus 441 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 441 EDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred cccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 888889999999877654444557899999999999999999999999999999999999999998764
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-61 Score=562.02 Aligned_cols=497 Identities=18% Similarity=0.179 Sum_probs=378.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++.+.. +..+.+||+||.++++++|++|.++|+++||+|+|+++|++|+++++|||+++
T Consensus 40 ~l~~~l~~~a~-~~p~~~a~~~~~~~-~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 40 RLTDRLVHWAQ-EAPDRVFLAERGAD-GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred cHHHHHHHHHH-HCCCCceeeeccCC-CceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 67889999998 89999999875211 22478999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCC-----HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccc
Q 004348 281 GAVHSVVFAGFS-----SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (759)
Q Consensus 281 Gav~vpldp~~~-----~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (759)
|++++|++|.++ .+++.+++++++++++|+++... ....+.... .....++......
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~-----------~~~~~~~~~---~~~~~~i~~~~~~---- 179 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA-----------FARALAAVV---PADVEVVAVRGAV---- 179 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH-----------HHHHHhhhc---cCCceEEEecCCC----
Confidence 999999999998 79999999999999999875311 111111110 1111223222110
Q ss_pred cccccCCCCccchhhhcCCCCC---CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCC--CCc
Q 004348 356 ENTKWQDGRDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK--PSD 430 (759)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~--~~d 430 (759)
.......|.+....... ........++|+++|+|||||||.||||++||++++.+ .......+++. .++
T Consensus 180 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~~~~ 253 (614)
T PRK08180 180 -----PGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCAN-QQMLAQTFPFLAEEPP 253 (614)
T ss_pred -----CCcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHH-HHHHHhhccccCCCCc
Confidence 00011334444332111 11112346789999999999999999999999995544 44444445553 568
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc--ccccCCC
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE--YVTRYSR 508 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~--~~~~~~l 508 (759)
++++++|++|..++.+.++.+|++|+++++.++.....+...+++.++++++|+++++|+++..|++.... .....++
T Consensus 254 ~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~ 333 (614)
T PRK08180 254 VLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFF 333 (614)
T ss_pred EEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhc
Confidence 99999999999987778889999999999976432212345788899999999999999999998864321 1123457
Q ss_pred CCeeEEEEeCCCCCHHHHHHHHHH----hCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCC
Q 004348 509 KSLRVLGSVGEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (759)
Q Consensus 509 ~sLr~v~~gGe~l~~~~~~~~~~~----~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g 584 (759)
++||.+++||++++++++++|.+. +|. ++++++.||+||++.+++..... ...++++|+|++|++++|+|++
T Consensus 334 ~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~~- 409 (614)
T PRK08180 334 SRLKLLFYAGAALSQDVWDRLDRVAEATCGE-RIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVPVG- 409 (614)
T ss_pred cceeEEEEccCCCCHHHHHHHHHHHHhhcCC-CceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEecCC-
Confidence 899999999999999999999875 342 37899999999998655433222 2456899999999999999863
Q ss_pred cccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee------------------------ccEeeC
Q 004348 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------------SGHRIG 640 (759)
Q Consensus 585 ~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------------~G~rI~ 640 (759)
..|||+|+| |+++.|||++|+.+.+.|. .+|||+|||+|+ +|++|+
T Consensus 410 ------~~GEi~vrg--~~v~~GY~~~p~~t~~~~~--~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~ 479 (614)
T PRK08180 410 ------GKLEVRVKG--PNVTPGYWRAPELTAEAFD--EEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVS 479 (614)
T ss_pred ------CCcEEEEec--CccchhhcCChhHhHhhcc--cCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEec
Confidence 359999999 8999999999999888764 379999999876 588776
Q ss_pred --HHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCC---------C--cH-HHHHHHHHHHHhhcCCCc---
Q 004348 641 --TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP---------Y--SE-ELRKSLVLAVRKQIGAFA--- 703 (759)
Q Consensus 641 --~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~---------~--~~-~l~~~l~~~l~~~Lp~~~--- 703 (759)
+.|||.++.+||.|++|+|++.+++ .+.|+|+++++.. . .+ ...++|+++++++|..|+
T Consensus 480 ~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 555 (614)
T PRK08180 480 VGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQA 555 (614)
T ss_pred chhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999998765 4779998865410 0 00 013456777766666666
Q ss_pred -----cccEEEEeCCCCCCC------CCcccHHHHHHHHhcccCCCCCC
Q 004348 704 -----APDKIHWAPGLPKTR------SGKIMRRILRKIASRQLDELGDT 741 (759)
Q Consensus 704 -----vP~~iv~v~~lP~T~------~GKvdR~~L~~~~~~~~~~~~~~ 741 (759)
+|+++++++++|+|+ +||+.|+++.+.|+.+++++++.
T Consensus 556 ~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~ 604 (614)
T PRK08180 556 TGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYAD 604 (614)
T ss_pred cccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhCC
Confidence 899999999999754 56889999999999999888763
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=539.51 Aligned_cols=436 Identities=21% Similarity=0.297 Sum_probs=368.1
Q ss_pred cCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCC
Q 004348 213 GLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292 (759)
Q Consensus 213 ~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~ 292 (759)
+.++++|+++. ++.+||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|++|.++
T Consensus 12 ~~~~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~ 80 (471)
T PRK07787 12 AADIADAVRIG------GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSG 80 (471)
T ss_pred ccCCceEEEeC------CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCC
Confidence 57899999986 689999999999999999996 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhc
Q 004348 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372 (759)
Q Consensus 293 ~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (759)
.+++.++++++++++++++..... ..+.... +.... ..|.
T Consensus 81 ~~~l~~~l~~~~~~~il~~~~~~~----------------------~~~~~~~-~~~~~--------------~~~~--- 120 (471)
T PRK07787 81 VAERRHILADSGAQAWLGPAPDDP----------------------AGLPHVP-VRLHA--------------RSWH--- 120 (471)
T ss_pred hHHHHHHHHhcCCCEEEecCCccc----------------------cccccee-eeccc--------------cccc---
Confidence 999999999999999998753110 0010000 00000 0010
Q ss_pred CCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHh
Q 004348 373 PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452 (759)
Q Consensus 373 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L 452 (759)
......++++++|+|||||||.||||+++|++++. ........+++.++|++++..|+.|..++...++.++
T Consensus 121 -------~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 192 (471)
T PRK07787 121 -------RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAA-DLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPL 192 (471)
T ss_pred -------cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHH-HHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHH
Confidence 01123578999999999999999999999999544 4545556688999999999999999999888899999
Q ss_pred hcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHH
Q 004348 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532 (759)
Q Consensus 453 ~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 532 (759)
..|+++++.+. +++..+++.|+ +++|++.++|+++..|.+... ....++++|.+++||++++++++++|.+.
T Consensus 193 ~~G~~~~~~~~----~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~---~~~~l~~l~~~~~gg~~~~~~~~~~~~~~ 264 (471)
T PRK07787 193 RIGNRFVHTGR----PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE---AARALRGARLLVSGSAALPVPVFDRLAAL 264 (471)
T ss_pred hcCCEEEecCC----CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc---ccccccceeEEEECCCCCCHHHHHHHHHH
Confidence 99999988753 48999999999 999999999999999887532 12367899999999999999999999998
Q ss_pred hCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccC-CC-ceEEEEEecCCCcccccccC
Q 004348 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GE-CSGYLCIKSSWPGAFRTLYG 610 (759)
Q Consensus 533 ~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp-~g-~~GEL~I~g~~~~v~~GY~~ 610 (759)
++ .++++.||+||++........ ....++++|+|++|+.++|+|+++++++ .| +.|||+|+| +++++||++
T Consensus 265 ~~---~~~~~~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~ 337 (471)
T PRK07787 265 TG---HRPVERYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRG--PTLFDGYLN 337 (471)
T ss_pred cC---CCeecccCccccCcceecCCC--CcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEEC--cccchhhcC
Confidence 86 689999999999865432221 1235678999999999999999999987 34 489999999 899999999
Q ss_pred ChhhHHhhhcccCCcEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeE
Q 004348 611 DHERYETTYFKPFPGYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 670 (759)
Q Consensus 611 ~~e~~~~~~~~~~~g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~ 670 (759)
+++.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||.|.+++|++.++...++.
T Consensus 338 ~~~~t~~~~~~--~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~ 415 (471)
T PRK07787 338 RPDATAAAFTA--DGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415 (471)
T ss_pred ChhhchhcccC--CCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeE
Confidence 99998877753 68999999987 799999999999999999999999999988877899
Q ss_pred EEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 671 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 671 lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
+++||+..... + .++|+++++++|++|++|..|+++++||+|++||++|++|++
T Consensus 416 ~~a~v~~~~~~--~---~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 416 IVAYVVGADDV--A---ADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred EEEEEEeCCCC--C---HHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 99999984332 2 567999999999999999999999999999999999999975
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=599.41 Aligned_cols=489 Identities=23% Similarity=0.245 Sum_probs=392.3
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
+++.+.|+++++ ++||++|+++.. ++++||+||+++++++|+.|++ ++++||+|+++++|++|+++++|||++
T Consensus 615 ~~l~~~~~~~a~-~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~ 687 (1146)
T PRK08633 615 PPLAEAWIDTAK-RNWSRLAVADST-----GGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLL 687 (1146)
T ss_pred CCHHHHHHHHHH-hcCCCcEEEcCC-----CCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHH
Confidence 357788888888 899999998531 4689999999999999999987 489999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHH--HHHHhhcCCCccEEEEeccCccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAA--LDECAKSGISVDVCLTYENQSAMTREN 357 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (759)
+|++++|++|.++.+++.+++++++++++++++.... .+.+. .... +....++..++...
T Consensus 688 ~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~----- 749 (1146)
T PRK08633 688 AGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLE---------KLKNKGFDLEL----PENVKVIYLEDLKA----- 749 (1146)
T ss_pred cCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHH---------HHhccCCchhc----ccCceEEEeehhcc-----
Confidence 9999999999999999999999999999998765321 11100 0001 11223333322110
Q ss_pred cccCCCCccchhhhcCCC--CC----CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcE
Q 004348 358 TKWQDGRDIWWQDVVPKY--PT----KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431 (759)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~ 431 (759)
.. .....+.+..... +. ........++|+++|+|||||||.||||+++|++++ .........+++.++|+
T Consensus 750 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~-~~~~~~~~~~~~~~~d~ 825 (1146)
T PRK08633 750 -KI--SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNIL-SNIEQISDVFNLRNDDV 825 (1146)
T ss_pred -cc--chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHH-HHHHHHHHhcCCCCCCE
Confidence 00 0000111111100 00 000123567999999999999999999999999954 44555666788999999
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCe
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (759)
+++.+|+.|..++...++.+++.|+++++.+.. .+++.+++.++++++|++.++|++++.+.+... ....+++++
T Consensus 826 ~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l 900 (1146)
T PRK08633 826 ILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDP---TDALGIAKLVAKHRATILLGTPTFLRLYLRNKK--LHPLMFASL 900 (1146)
T ss_pred EEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCC---CCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc--cCcccCCCe
Confidence 999999999999877789999999999987542 488999999999999999999999999987543 234578899
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC--------CCCCCCCcCCCCCCceEEEECC-
Q 004348 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--------WPQKPGSATFPFFGVQPVIVDE- 582 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~--------~~~~~~~iG~p~~g~~~~IvD~- 582 (759)
|.+++|||++++++.+++.+.+| +++++.||+||++..++...+.. ...+++++|+|++|++++|+|+
T Consensus 901 r~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~ 977 (1146)
T PRK08633 901 RLVVAGAEKLKPEVADAFEEKFG---IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPE 977 (1146)
T ss_pred eeEEEcCCcCCHHHHHHHHHHhC---CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCC
Confidence 99999999999999999999987 78999999999987655432211 1135678999999999999995
Q ss_pred CCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc-cCCcEEEeCCeee-------------------ccEeeCHH
Q 004348 583 KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCS-------------------SGHRIGTA 642 (759)
Q Consensus 583 ~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~-~~~g~y~TGDl~~-------------------~G~rI~~~ 642 (759)
+++++|.|+.|||+|+| |.++.||+++|+.+.+.+.. +.+|||+|||+|+ +|++|+|.
T Consensus 978 ~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~ 1055 (1146)
T PRK08633 978 TFEELPPGEDGLILIGG--PQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLG 1055 (1146)
T ss_pred CCccCCCCCceEEEEcC--CCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHH
Confidence 68999999999999999 89999999999988877642 2348999999998 79999999
Q ss_pred HHHHHHhcCC--ccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCC
Q 004348 643 EVESALVSHP--QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRS 719 (759)
Q Consensus 643 eIE~~L~~~p--~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~ 719 (759)
|||++|.+|| .+.+++|++++|+..++.++++++... .+ .+++++++++ ++|+|++|..+++++++|+|++
T Consensus 1056 eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~---~~---~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~ 1129 (1146)
T PRK08633 1056 AVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGA---ED---VEELKRAIKESGLPNLWKPSRYFKVEALPLLGS 1129 (1146)
T ss_pred HHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCc---cC---HHHHHHHHHhcCCCcccCCcEEEEecCcCCCCC
Confidence 9999999999 567899999999988999999998621 12 4678888875 6999999999999999999999
Q ss_pred CcccHHHHHHHHhc
Q 004348 720 GKIMRRILRKIASR 733 (759)
Q Consensus 720 GKvdR~~L~~~~~~ 733 (759)
||+||++|++++.+
T Consensus 1130 GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633 1130 GKLDLKGLKELALA 1143 (1146)
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999998654
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-60 Score=547.59 Aligned_cols=493 Identities=23% Similarity=0.287 Sum_probs=390.5
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+|+++|++.. .+.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~ 83 (540)
T PRK06164 11 TLASLLDAHAR-ARPDAVALIDE------DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARL 83 (540)
T ss_pred CHHHHHHHHHH-hCCCCeEEecC------CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 57889999998 89999999954 678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++|++++... +.+.+++....... .+.++.++.++.... ..
T Consensus 84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~-- 150 (540)
T PRK06164 84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVPPDA---LPPLRAIAVVDDAAD----AT-- 150 (540)
T ss_pred CcEEEecCCCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhcccccc---cCCcceEEEeccCcc----cC--
Confidence 999999999999999999999999999999766421 12222222211110 023344444431110 00
Q ss_pred CCCCccchhhhcCCCCCCC----CccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEec
Q 004348 361 QDGRDIWWQDVVPKYPTKC----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~ 436 (759)
.......|.+......... ......++++++++|||||||+||||+++|++++ .........+++.+++++++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~~~~~~~~~~~~~~~~~~l~~~ 229 (540)
T PRK06164 151 PAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLL-RHARAIARAYGYDPGAVLLAAL 229 (540)
T ss_pred CCCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHH-HHHHHHHHhcCCCCCCEEEEcC
Confidence 0000001111111100000 0112346889999999999999999999999954 4455566778899999999999
Q ss_pred CcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEE
Q 004348 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (759)
Q Consensus 437 ~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (759)
|++|.+++ ..++.+|..|+++++.+. +++..+++.|+++++|+++++|+++..|.+.. ....+++++|.+.+
T Consensus 230 p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~---~~~~~~~~l~~~~~ 301 (540)
T PRK06164 230 PFCGVFGF-STLLGALAGGAPLVCEPV----FDAARTARALRRHRVTHTFGNDEMLRRILDTA---GERADFPSARLFGF 301 (540)
T ss_pred CchhHHHH-HHHHHHHhcCceEEecCC----CCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh---cccCCCcceeeeee
Confidence 99999996 578999999999998753 48899999999999999999999999998862 23457889998877
Q ss_pred eC-CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC-CCCCCCCcCCCC-CCceEEEECC-CCcccCCCce
Q 004348 517 VG-EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPF-FGVQPVIVDE-KGVEIEGECS 592 (759)
Q Consensus 517 gG-e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~~iG~p~-~g~~~~IvD~-~g~~vp~g~~ 592 (759)
+| .+...++.+++.+. + +++++.||+||++.+.+...... ......+.|.|+ +++.++|+|+ ++++++.|+.
T Consensus 302 ~~~~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~ 377 (540)
T PRK06164 302 ASFAPALGELAALARAR-G---VPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES 377 (540)
T ss_pred ccCCcchHHHHHHHhhc-C---CceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe
Confidence 76 55666677776654 4 88999999999987654332211 112334578876 7899999994 7899999999
Q ss_pred EEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 593 GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
|||+|+| ++++.||+++++.+...|.. +|||+|||+|+ +|++|+|.|||++|.+||+
T Consensus 378 Gel~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~ 453 (540)
T PRK06164 378 GEIEIRA--PSLMRGYLDNPDATARALTD--DGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPG 453 (540)
T ss_pred eEEEEec--ccccccccCCchhhhhcccC--CCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCC
Confidence 9999999 89999999999998887653 78999999988 8999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCC---cccHHHHHHH
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG---KIMRRILRKI 730 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~G---KvdR~~L~~~ 730 (759)
|.+++|++++. .+++.++++|+++++...+ .++|+++++++||+|++|+.|++++++|+|++| |++|+.|+++
T Consensus 454 v~~~~v~~~~~-~~~~~~~~~vv~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~ 529 (540)
T PRK06164 454 VAAAQVVGATR-DGKTVPVAFVIPTDGASPD---EAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREM 529 (540)
T ss_pred ceeEEEEecCC-CCceeEEEEEEeCCCCCCC---HHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHH
Confidence 99999999874 4567899999987765433 578999999999999999999999999999999 9999999998
Q ss_pred Hhcc
Q 004348 731 ASRQ 734 (759)
Q Consensus 731 ~~~~ 734 (759)
+...
T Consensus 530 ~~~~ 533 (540)
T PRK06164 530 AQAR 533 (540)
T ss_pred HHHh
Confidence 7654
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=549.84 Aligned_cols=492 Identities=21% Similarity=0.279 Sum_probs=387.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|.++++ .+|+++|+++. ++.+||+||.++++++|+.|. +.|+++||+|+++++|++++++++|||++
T Consensus 26 ~~~~~l~~~~~-~~~~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 26 TVAEVFATSVA-KFADRPAYHSF------GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred cHHHHHHHHHH-hCCCCceEEEC------CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57889999998 89999999975 678999999999999999996 68999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc-----
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT----- 354 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~----- 354 (759)
+|++++|++|.++.+++.+++++++++++++++... ..+.+.... .....++.........
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 164 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFG---------TTVQQVIAD-----TPVKQVITTGLGDMLGFPKAA 164 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhH---------HHHHHHhhC-----CCccEEEEechhhhcccccch
Confidence 999999999999999999999999999999987532 112222111 1122333221000000
Q ss_pred ---------cc-ccccCCCCccchhhhcCCCCC-CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH
Q 004348 355 ---------RE-NTKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (759)
Q Consensus 355 ---------~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (759)
.. ...........|.+....... ..+.....++++++|+|||||||.||||+++|.+++.+.. .....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~-~~~~~ 243 (560)
T PRK08751 165 LVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQ-QAHQW 243 (560)
T ss_pred hhhhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHH-HHHHh
Confidence 00 000000111223333222111 1122335678999999999999999999999999654433 23233
Q ss_pred hC----CCCC-cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhc
Q 004348 424 FD----YKPS-DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (759)
Q Consensus 424 ~~----l~~~-d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~ 498 (759)
++ +.++ ++++...++.|..++....+.++..|+++++.... .++..+++.|+++++|++..+|+++..+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 320 (560)
T PRK08751 244 LAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNP---RDMPGFVKELKKTRFTAFTGVNTLFNGLLNT 320 (560)
T ss_pred hccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCc---CCHHHHHHHHHhcceeEecChHHHHHHHHcC
Confidence 33 3343 56778889999888666667778888888777542 4788999999999999999999999999876
Q ss_pred CCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEE
Q 004348 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (759)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~ 578 (759)
.. ....++++||.+++||+++++++.+.|.+.++ +++++.||+||++..++.... ......+++|+|++++.++
T Consensus 321 ~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~ 394 (560)
T PRK08751 321 PG--FDQIDFSSLKMTLGGGMAVQRSVAERWKQVTG---LTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDAC 394 (560)
T ss_pred cC--cCCcchhhheeeeeCCCCCCHHHHHHHHHHhC---CeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEE
Confidence 43 23456789999999999999999999999886 789999999999875543221 1123457899999999999
Q ss_pred EECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEee
Q 004348 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRI 639 (759)
Q Consensus 579 IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI 639 (759)
|+|+++++++.|+.|||+|+| +.+++||+++++.+...|. .+|||+|||+|+ +|++|
T Consensus 395 i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v 470 (560)
T PRK08751 395 IKDDAGTVLAIGEIGELCIKG--PQVMKGYWKRPEETAKVMD--ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNV 470 (560)
T ss_pred EECCCCCCCCCCCceEEEEec--CccchhhcCChhhhhhccc--cCCCccccceEEEcCCceEEEEeechhheeECCEEE
Confidence 999999999999999999999 8899999999998876653 368999999987 89999
Q ss_pred CHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCC
Q 004348 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719 (759)
Q Consensus 640 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~ 719 (759)
+|.|||++|..||+|.+|+|+++++...++.++++++.+.. ..+ .++|+++++++|++|++|..|+++++||+|++
T Consensus 471 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~-~~~---~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~ 546 (560)
T PRK08751 471 YPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP-ALT---AEDVKAHARANLTGYKQPRIIEFRKELPKTNV 546 (560)
T ss_pred cHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCC-CCC---HHHHHHHHHHhhhhccCCeEEEEhhhCCCCcc
Confidence 99999999999999999999999988778888888876532 222 56899999999999999999999999999999
Q ss_pred CcccHHHHHHHH
Q 004348 720 GKIMRRILRKIA 731 (759)
Q Consensus 720 GKvdR~~L~~~~ 731 (759)
||++|++|++..
T Consensus 547 gKv~r~~L~~~~ 558 (560)
T PRK08751 547 GKILRRELRDAA 558 (560)
T ss_pred ccccHHHHHHhh
Confidence 999999999763
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-61 Score=567.00 Aligned_cols=514 Identities=20% Similarity=0.221 Sum_probs=379.2
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEc---------CC--------CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEA---------ND--------PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~---------~~--------~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 262 (759)
+++.++|+++++ .+||++|+.+.. .+ .+..+.+||+||.++++++|++|.++|+++||+|+|
T Consensus 58 ~t~~~l~~~~~~-~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 58 TTLAALFEQSCK-KYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CCHHHHHHHHHH-HCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 478899999999 899999995420 00 022345999999999999999999999999999999
Q ss_pred EcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCcc
Q 004348 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVD 342 (759)
Q Consensus 263 ~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 342 (759)
+++|++||++++|||+++|+++|||++.++.+++.++|++++++++|++.... ..+......+ +.++
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~---------~~l~~~~~~~----~~l~ 203 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL---------KKLIDISSQL----ETVK 203 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH---------HHHHHHhhcc----CCce
Confidence 99999999999999999999999999999999999999999999999975431 1222222222 4567
Q ss_pred EEEEeccCcccccccc-ccCCCCccchhhhcCCCCC-CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHH
Q 004348 343 VCLTYENQSAMTRENT-KWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (759)
Q Consensus 343 ~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~ 420 (759)
.++.+++......... .........|++....... ..+.....++|+++|+|||||||.||||++||++++.+.....
T Consensus 204 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~ 283 (696)
T PLN02387 204 RVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVM 283 (696)
T ss_pred EEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHH
Confidence 7777764321000000 0000011234444322111 1122234689999999999999999999999999655443332
Q ss_pred HHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCC-----hhHHHHHHHHcCCcEEEehHHHHHHH
Q 004348 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD-----SGRSWDIVDKYKVTIFYTAPTLVRSL 495 (759)
Q Consensus 421 ~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d-----~~~l~~~i~~~~vT~l~~~Ps~l~~l 495 (759)
....++.++|++++++|++|++++... +..+..|+++.+.... ...+ +..++..++++++|++.++|++++.|
T Consensus 284 ~~~~~~~~~d~~l~~lPl~Hi~~~~~~-~~~~~~g~~i~~g~~~-~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l 361 (696)
T PLN02387 284 TVVPKLGKNDVYLAYLPLAHILELAAE-SVMAAVGAAIGYGSPL-TLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRV 361 (696)
T ss_pred hhcCCCCCCCEEEEECcHHHHHHHHHH-HHHHHhCCEEEECChh-hhcccccccccCchhhHHHhCCcEEEehhHHHHHH
Confidence 222468889999999999999886543 3356677776653221 0001 23456789999999999999999988
Q ss_pred HhcCCcccc--------------------------------------------cCCC-CCeeEEEEeCCCCCHHHHHHHH
Q 004348 496 MRDGNEYVT--------------------------------------------RYSR-KSLRVLGSVGEPINPSAWRWFF 530 (759)
Q Consensus 496 ~~~~~~~~~--------------------------------------------~~~l-~sLr~v~~gGe~l~~~~~~~~~ 530 (759)
.+....... +..+ +++|.+++||+++++++.+++.
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~ 441 (696)
T PLN02387 362 RDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFIN 441 (696)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHH
Confidence 653110000 0001 5899999999999999988888
Q ss_pred HHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCc-cc--CCCceEEEEEecCCCcccc
Q 004348 531 NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGV-EI--EGECSGYLCIKSSWPGAFR 606 (759)
Q Consensus 531 ~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~-~v--p~g~~GEL~I~g~~~~v~~ 606 (759)
..+| +++++.||+||+++..+..... ....+++|+|+++++++|+| +++. .+ .++..|||+|+| |+++.
T Consensus 442 ~~~g---~~v~~~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG--p~v~~ 514 (696)
T PLN02387 442 ICLG---APIGQGYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG--PSVTL 514 (696)
T ss_pred HHcC---CCeeEeechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc--Ccccc
Confidence 7787 7899999999998765543322 24568999999999999998 4443 22 233469999999 89999
Q ss_pred cccCChhhHHhhhcccCCc--EEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEec
Q 004348 607 TLYGDHERYETTYFKPFPG--YYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEH 664 (759)
Q Consensus 607 GY~~~~e~~~~~~~~~~~g--~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~ 664 (759)
|||++|+.|.+.|..+.+| ||+|||+|+ +|++|+|.|||++|.+||.|.+|+|++.+.
T Consensus 515 GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~ 594 (696)
T PLN02387 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF 594 (696)
T ss_pred hhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC
Confidence 9999999999988543345 999999998 599999999999999999999999997642
Q ss_pred CCCCeEEEEEEEEcCCC----------C--------CcHHHHHHHHHHH-----HhhcCCCccccEEEEeCCCC------
Q 004348 665 EVKGQGIYAFVTLVEGV----------P--------YSEELRKSLVLAV-----RKQIGAFAAPDKIHWAPGLP------ 715 (759)
Q Consensus 665 ~~~~~~lva~Vv~~~~~----------~--------~~~~l~~~l~~~l-----~~~Lp~~~vP~~iv~v~~lP------ 715 (759)
...++|+|++.+.. . .++++.+++.+.+ +.+|..|.+|+.|.++++-.
T Consensus 595 ---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~ 671 (696)
T PLN02387 595 ---HSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGL 671 (696)
T ss_pred ---cceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCc
Confidence 34688999986421 0 0122334444444 34699999999999988643
Q ss_pred CCCCCcccHHHHHHHHhcccCCCC
Q 004348 716 KTRSGKIMRRILRKIASRQLDELG 739 (759)
Q Consensus 716 ~T~~GKvdR~~L~~~~~~~~~~~~ 739 (759)
+|++.|+.|+.+++.|..++++++
T Consensus 672 lT~t~K~~R~~i~~~y~~~i~~ly 695 (696)
T PLN02387 672 VTAALKLKREQIRKKFKDDLKKLY 695 (696)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHh
Confidence 688889999999999998877654
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=542.06 Aligned_cols=459 Identities=21% Similarity=0.232 Sum_probs=376.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
.+.+.|.++++ .+||++|+++. .+.+||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 36 ~~~~~~~~~a~-~~p~~~a~~~~------~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 108 (516)
T PRK13383 36 NPYTLLAVTAA-RWPGRTAIIDD------DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLL 108 (516)
T ss_pred cHHHHHHHHHH-HCCCCcEEEeC------CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 35667788888 89999999875 568999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++++++... .. +... ...++.++...
T Consensus 109 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~----~~~~------~~~~~~~~~~~--------- 160 (516)
T PRK13383 109 GADVVPISTEFRSDALAAALRAHHISTVVADNEFA---------ER----IAGA------DDAVAVIDPAT--------- 160 (516)
T ss_pred CeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHH---------HH----HHhh------hcceEEeccch---------
Confidence 99999999999999999999999999999976532 11 1111 01122221110
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHH--HHHHHHHhCCCCCcEEEEecCc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADC 438 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~l~~~d~~l~~~~l 438 (759)
.... ... ..+...++.++|+|||||||+||||+++|.. .... .......+++.++|+++...|+
T Consensus 161 -----~~~~----~~~----~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~pl 226 (516)
T PRK13383 161 -----AGAE----ESG----GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQL-RSAVGVWVTILDRTRLRTGSRISVAMPM 226 (516)
T ss_pred -----hhhh----cCC----CCCCCCCCCcEEEECCCCCCCCCeeeecchh-hhhhhhHHhHHhhhccCCCCeEEEecCC
Confidence 0000 000 0112345678999999999999999999974 2211 1122234678899999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
+|.+++ ..++.++..|+++++... ++++.+++.++++++|.+.++|+++..|...........+++++|.+++||
T Consensus 227 ~h~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG 301 (516)
T PRK13383 227 FHGLGL-GMLMLTIALGGTVLTHRH----FDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSG 301 (516)
T ss_pred cchhhH-HHHHHHHhcCCEEEECCC----CCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECC
Confidence 999986 457788999999987642 489999999999999999999999999987643222234678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEe
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++++++|.+.+| ..+++.||+||++........ .....++++|+|++|++++|+|+++++++.|+.|||+++
T Consensus 302 ~~l~~~~~~~~~~~~g---~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~ 377 (516)
T PRK13383 302 DRLDPTLGQRFMDTYG---DILYNGYGSTEVGIGALATPA-DLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVG 377 (516)
T ss_pred CCCCHHHHHHHHHHcC---chhhhcccccccccceecccc-ccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEe
Confidence 9999999999999987 679999999999865543321 122356789999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| +.++.||++++... + .+|||+|||+++ +|++|+|.|||++|.+||.|.+++|
T Consensus 378 g--~~~~~~Y~~~~~~~----~--~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~v 449 (516)
T PRK13383 378 G--ELAGTRYTDGGGKA----V--VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAV 449 (516)
T ss_pred c--CcccccccCCchhh----e--ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence 9 88999999876421 2 378999999987 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
+++++...++.++++|+++++...+ .++|+++++++++.|++|..|+++++||+|++||++|++|+
T Consensus 450 v~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 450 IGVPDERFGHRLAAFVVLHPGSGVD---AAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EeccccccCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 9999888889999999987654433 46899999999999999999999999999999999999985
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=539.31 Aligned_cols=490 Identities=23% Similarity=0.289 Sum_probs=387.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||++|+++. .+.+||.||+++++++|+.|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 4 ~l~~~~~~~a~-~~p~~~a~~~~------~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~ 76 (533)
T PRK07798 4 NIADLFEAVAD-AVPDRVALVCG------DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKA 76 (533)
T ss_pred cHHHHHHHHHH-hCCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 47789999998 89999999986 688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++++++... ..+.+....+ +....++.++.... ...
T Consensus 77 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~ 138 (533)
T PRK07798 77 RAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFA---------PRVAEVLPRL----PKLRTLVVVEDGSG-----NDL 138 (533)
T ss_pred CeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhH---------HHHHHHhccC----CCccEEEEecCCcc-----ccc
Confidence 99999999999999999999999999999976531 2222222211 34445555543221 000
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH--------HHhCC------
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--------YAFDY------ 426 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~--------~~~~l------ 426 (759)
....+.|.+.+.......... ....+.++|+|||||||.||||+++|++++.+...... ..+.+
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (533)
T PRK07798 139 -LPGAVDYEDALAAGSPERDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAA 216 (533)
T ss_pred -CCccccHHHHHhccCCcCCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccC
Confidence 011234555544322221111 22345679999999999999999999996543222111 11122
Q ss_pred CCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHH-HHHhcCCccccc
Q 004348 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVR-SLMRDGNEYVTR 505 (759)
Q Consensus 427 ~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~-~l~~~~~~~~~~ 505 (759)
..+++++...|+.|..++ +.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|..+. .+.+... ....
T Consensus 217 ~~~~~~~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~~~ 292 (533)
T PRK07798 217 GPGMRRFPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDV--RFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-ARGP 292 (533)
T ss_pred CCCceEEEecchhhhhhH-HHHHHHHhcCceEEEecCC--CcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cccc
Confidence 567899999999999985 5889999999999998743 348999999999999999999986553 3333321 1123
Q ss_pred CCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcC--CCCCCceEEEECCC
Q 004348 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT--FPFFGVQPVIVDEK 583 (759)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG--~p~~g~~~~IvD~~ 583 (759)
.+++++|.+++||+++++++.++|.+.++ +..+++.||+||++.+....... .....| ++.++..++|+|++
T Consensus 293 ~~~~~l~~i~~gG~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~----~~~~~g~~~~~~~~~~~i~~~~ 366 (533)
T PRK07798 293 YDLSSLFAIASGGALFSPSVKEALLELLP--NVVLTDSIGSSETGFGGSGTVAK----GAVHTGGPRFTIGPRTVVLDED 366 (533)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHcC--CCeEEeeecccccccccccCCCC----CCccCCCCccCCCceEEEECCC
Confidence 46789999999999999999999999885 47899999999997544322111 112233 78899999999999
Q ss_pred CcccCCCce--EEEEEecCCCcccccccCChhhHHhhhcc-cCCcEEEeCCeee-------------------ccEeeCH
Q 004348 584 GVEIEGECS--GYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCS-------------------SGHRIGT 641 (759)
Q Consensus 584 g~~vp~g~~--GEL~I~g~~~~v~~GY~~~~e~~~~~~~~-~~~g~y~TGDl~~-------------------~G~rI~~ 641 (759)
+++++.|.. |+|+. + +.++.||+++++.+.+.|.. +..+||+|||+++ +|++|+|
T Consensus 367 ~~~~~~g~~~~g~l~~-~--~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~ 443 (533)
T PRK07798 367 GNPVEPGSGEIGWIAR-R--GHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFP 443 (533)
T ss_pred CCCCCCCCCCeeEEEe-e--cCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCH
Confidence 999999877 77765 4 47899999999998887753 2345999999987 7999999
Q ss_pred HHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCc
Q 004348 642 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721 (759)
Q Consensus 642 ~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GK 721 (759)
.|||++|.++|.|.+++|+++++...++.++++|+++++...+ .++|+++++++|+.|++|..++++++||+|++||
T Consensus 444 ~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK 520 (533)
T PRK07798 444 EEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPD---LAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGK 520 (533)
T ss_pred HHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCC---HHHHHHHHhhhcccCCCCeEEEEcccCCCCCcch
Confidence 9999999999999999999998887788999999988765433 6789999999999999999999999999999999
Q ss_pred ccHHHHHHHHhc
Q 004348 722 IMRRILRKIASR 733 (759)
Q Consensus 722 vdR~~L~~~~~~ 733 (759)
++|+.|++++++
T Consensus 521 ~~~~~~~~~~~~ 532 (533)
T PRK07798 521 ADYRWAKEQAAE 532 (533)
T ss_pred hhHHHHhhhhcc
Confidence 999999998864
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=559.54 Aligned_cols=511 Identities=18% Similarity=0.203 Sum_probs=381.2
Q ss_pred cccHHHHHHhhcccccCCCeEEEEEEc---CCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHH
Q 004348 198 ITNICYNCLDRNIEAGLGDKVAIYWEA---NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274 (759)
Q Consensus 198 ~~n~~~~~l~~~~~~~~pd~~Al~~~~---~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~ 274 (759)
..++++++|+++++ ++|+++|+.+.. ...+..+.+||+||.++++++|++|.++|+++||+|+|+++|++||++++
T Consensus 40 ~~~t~~~~~~~~~~-~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~ 118 (660)
T PLN02430 40 DITTAWDIFSKSVE-KYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAM 118 (660)
T ss_pred CCCCHHHHHHHHHH-hCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45689999999998 899999997642 11122345799999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc
Q 004348 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (759)
Q Consensus 275 LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (759)
|||+++|++++|+++.++++++.+++++++++++|+++... ...+....... +.++.+++++......
T Consensus 119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~--------~~~~~~~~~~~----~~l~~ii~~~~~~~~~ 186 (660)
T PLN02430 119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKI--------KELLEPDCKSA----KRLKAIVSFTSVTEEE 186 (660)
T ss_pred HHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHH--------HHHHhhhcccC----CCceEEEEECCCChHH
Confidence 99999999999999999999999999999999999865421 11111111111 3456666664321100
Q ss_pred ccccccCCCCccchhhhcCCCCC-CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH--HH--hCCCCC
Q 004348 355 RENTKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--YA--FDYKPS 429 (759)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~--~~--~~l~~~ 429 (759)
.............|++++..... ........++|+++|+|||||||.||||++||++++.+...... .. .+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
T PLN02430 187 SDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHD 266 (660)
T ss_pred hhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCC
Confidence 00000000112345555432211 11122346899999999999999999999999996554332211 11 257789
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc------cc
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE------YV 503 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~------~~ 503 (759)
|++++++|++|.++.... +.++..|++++++.. ++..+++.|+++++|++.++|.++..+.+.... ..
T Consensus 267 d~~ls~lPl~H~~~~~~~-~~~l~~G~~i~~~~~-----~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~ 340 (660)
T PLN02430 267 DVYLSFLPLAHILDRMIE-EYFFRKGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPR 340 (660)
T ss_pred CEEEEeCcHHHHHHHHHH-HHHHHcCCEEEEeCC-----ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHH
Confidence 999999999999886554 457889999988753 567899999999999999999999877642100 00
Q ss_pred --------------------------cc----------CCC-CCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeecc
Q 004348 504 --------------------------TR----------YSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546 (759)
Q Consensus 504 --------------------------~~----------~~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~ 546 (759)
.. ..+ ++||.+++||+++++++.+++ +.++ .+++++.||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~--~~~i~~~YG~ 417 (660)
T PLN02430 341 RRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTS--CAFVVQGYGL 417 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhc--CCCeeeecch
Confidence 00 001 589999999999999986655 4455 3679999999
Q ss_pred ccccceecccCCCCCCCCCCCcCCCCCCceEEEEC--CCC-cccCCCceEEEEEecCCCcccccccCChhhHHhhhcccC
Q 004348 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD--EKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (759)
Q Consensus 547 TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD--~~g-~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~ 623 (759)
||+++..+...+.. ...++++|+|+++++++|+| +.+ .+++.+..|||+|+| |+++.|||++|+.+.+.| .
T Consensus 418 TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg--~~v~~GY~~~~e~t~~~~---~ 491 (660)
T PLN02430 418 TETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRG--KCLFSGYYKNPELTEEVM---K 491 (660)
T ss_pred hhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecC--CCccccccCChHHhhhhh---h
Confidence 99987655443322 23568999999999999986 333 556666789999999 899999999999998876 3
Q ss_pred CcEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCC--
Q 004348 624 PGYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV-- 681 (759)
Q Consensus 624 ~g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~-- 681 (759)
+|||+|||+|+ +|++|+|.+||++|.+||.|.+|+|++. ..++.++|+|++++..
T Consensus 492 dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~---~~~~~~~A~vv~~~~~~~ 568 (660)
T PLN02430 492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGD---SFKSMLVAVVVPNEENTN 568 (660)
T ss_pred ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEec---CCcceEEEEEEcCHHHHH
Confidence 79999999988 5999999999999999999999999973 2357899999986421
Q ss_pred --------C-------CcHHHHHHHHHHH-----HhhcCCCccccEEEEeCCC------CCCCCCcccHHHHHHHHhccc
Q 004348 682 --------P-------YSEELRKSLVLAV-----RKQIGAFAAPDKIHWAPGL------PKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 682 --------~-------~~~~l~~~l~~~l-----~~~Lp~~~vP~~iv~v~~l------P~T~~GKvdR~~L~~~~~~~~ 735 (759)
. ..+++.+.|++.+ ++.|+.|.++++|+++++- .+|+++|+.|+.+.+.|...+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i 648 (660)
T PLN02430 569 KWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEI 648 (660)
T ss_pred HHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHH
Confidence 0 1122333333333 2359999999999998743 489999999999999999888
Q ss_pred CCCC
Q 004348 736 DELG 739 (759)
Q Consensus 736 ~~~~ 739 (759)
++++
T Consensus 649 ~~ly 652 (660)
T PLN02430 649 DEMY 652 (660)
T ss_pred HHHH
Confidence 7765
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-60 Score=562.29 Aligned_cols=501 Identities=19% Similarity=0.228 Sum_probs=369.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcC-----------CC----------CcceeeeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAN-----------DP----------GVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~-----------~~----------~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 259 (759)
+++++|+++++ .+||++|+.+... .+ +..+.+||+||.++++++|++|+++|+++||+
T Consensus 70 t~~~~~~~~~~-~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~ 148 (700)
T PTZ00216 70 NFLQRLERICK-ERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN 148 (700)
T ss_pred CHHHHHHHHHH-hCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 68999999999 8999999998420 00 13689999999999999999999999999999
Q ss_pred EEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCC
Q 004348 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339 (759)
Q Consensus 260 Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 339 (759)
|+|+++|++||++++|||+++|++++|+++.++++++.++|++++++++|++.... ..+....... ..
T Consensus 149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~---------~~l~~~~~~~---~~ 216 (700)
T PTZ00216 149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV---------PNLLRLMKSG---GM 216 (700)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH---------HHHHHhhhhc---cC
Confidence 99999999999999999999999999999999999999999999999999975421 1111111110 01
Q ss_pred CccEEEEeccCccccccccccCCCCccchhhhcCCC----CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHH
Q 004348 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415 (759)
Q Consensus 340 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~ 415 (759)
....+++++.... ...........|++.+... ..........++|+++|+|||||||.||||++||++++.+
T Consensus 217 ~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~ 292 (700)
T PTZ00216 217 PNTTIIYLDSLPA----SVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292 (700)
T ss_pred CceEEEEECCCcc----ccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence 1124555543211 0000111223455554322 1111123346899999999999999999999999996544
Q ss_pred HHHHHHHHh----C-CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHH-------HHHHcCCc
Q 004348 416 TATTFKYAF----D-YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD-------IVDKYKVT 483 (759)
Q Consensus 416 ~~~~~~~~~----~-l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~-------~i~~~~vT 483 (759)
.......+ + +.++|++++++|++|.++... .+..+..|+++++. ++..+++ .|+++++|
T Consensus 293 -~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~l~~~~pT 363 (700)
T PTZ00216 293 -ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG-------SPRTLTDTFARPHGDLTEFRPV 363 (700)
T ss_pred -HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC-------CHHHhhhhhccccchHHHcCCc
Confidence 33333222 2 467899999999999887543 34457778876652 3444544 68899999
Q ss_pred EEEehHHHHHHHHhcCCccc-----------------------c----------------cCCCCCeeEEEEeCCCCCHH
Q 004348 484 IFYTAPTLVRSLMRDGNEYV-----------------------T----------------RYSRKSLRVLGSVGEPINPS 524 (759)
Q Consensus 484 ~l~~~Ps~l~~l~~~~~~~~-----------------------~----------------~~~l~sLr~v~~gGe~l~~~ 524 (759)
++.++|++++.|.+...... . ....++||.+++||++++++
T Consensus 364 ~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~ 443 (700)
T PTZ00216 364 FLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAA 443 (700)
T ss_pred EEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHH
Confidence 99999999988764311000 0 00015799999999999999
Q ss_pred HHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCC--cccCCCceEEEEEecCCC
Q 004348 525 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCIKSSWP 602 (759)
Q Consensus 525 ~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g--~~vp~g~~GEL~I~g~~~ 602 (759)
+.+++...++ ++++.||+||+++..+..... ....+++|+|++|++++|+|+++ ...+++..|||+|+| |
T Consensus 444 ~~~~~~~~~~----~l~~~YG~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG--~ 515 (700)
T PTZ00216 444 TQEFVNVVFG----MVIQGWGLTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRG--P 515 (700)
T ss_pred HHHHHHHHhh----hHhhccCcccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcC--C
Confidence 9987776653 799999999998665443322 24568999999999999999764 334556679999999 8
Q ss_pred cccccccCChhhHHhhhcccCCcEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceE--EEE
Q 004348 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEA--AVV 660 (759)
Q Consensus 603 ~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea--~Vv 660 (759)
++++|||++|+.|.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||.|.++ +|+
T Consensus 516 ~v~~GY~~~pe~T~~~f~~--dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~ 593 (700)
T PTZ00216 516 FLFKGYYKQEELTREVLDE--DGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVL 593 (700)
T ss_pred cccchhcCChhHhhhhccc--cCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEE
Confidence 9999999999999998854 78999999998 89999999999999999999973 444
Q ss_pred eEecCCCCeEEEEEEEEcCCC----------C-------CcHHHHHHHHHHH-----HhhcCCCccccEEEEeCC-----
Q 004348 661 GVEHEVKGQGIYAFVTLVEGV----------P-------YSEELRKSLVLAV-----RKQIGAFAAPDKIHWAPG----- 713 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~----------~-------~~~~l~~~l~~~l-----~~~Lp~~~vP~~iv~v~~----- 713 (759)
+.+ ....++|+|++.... . .++++.+.+.+.+ +..|..|..++.|+++++
T Consensus 594 ~~~---~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~ 670 (700)
T PTZ00216 594 VHP---ARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPE 670 (700)
T ss_pred Eec---CCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCC
Confidence 332 236789999875310 0 0122233333333 246889999999998864
Q ss_pred -CCCCCCCcccHHHHHHHHhcccCCCCC
Q 004348 714 -LPKTRSGKIMRRILRKIASRQLDELGD 740 (759)
Q Consensus 714 -lP~T~~GKvdR~~L~~~~~~~~~~~~~ 740 (759)
=-+|+++|+.|+++.+.|...+++++.
T Consensus 671 ~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 698 (700)
T PTZ00216 671 NGVLTAAMKLKRRVIDERYADLIKELFA 698 (700)
T ss_pred CCCCChhhccchHHHHHHHHHHHHHHhc
Confidence 247999999999999999988877653
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-59 Score=533.42 Aligned_cols=465 Identities=25% Similarity=0.330 Sum_probs=379.4
Q ss_pred ceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEE
Q 004348 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (759)
Q Consensus 230 ~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~ii 309 (759)
++.+||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus 9 ~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii 88 (502)
T PRK08276 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLI 88 (502)
T ss_pred CcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcccCCcccchHHHHHHHHHHHhhcCC-CccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCC
Q 004348 310 TSNAVKRGPKAIHLKDIVDAALDECAKSGI-SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388 (759)
Q Consensus 310 t~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 388 (759)
+++... ..+.+..... . .++.+++..... .....|.+........ .....++
T Consensus 89 ~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~ 141 (502)
T PRK08276 89 VSAALA---------DTAAELAAEL----PAGVPLLLVVAGPV-----------PGFRSYEEALAAQPDT---PIADETA 141 (502)
T ss_pred Eccchh---------hHHHHHhhhc----cccccEEEEeCCCC-----------CccccHHHHHhcCCCC---CCCCCCc
Confidence 976532 1122222211 1 334444332110 0112233333221111 1234567
Q ss_pred cEEEEeccCCCCCCcEEEEccchHHHHH-----HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecC
Q 004348 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHT-----ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (759)
Q Consensus 389 ~a~IiyTSGSTG~PKgV~~th~~~l~~~-----~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~ 463 (759)
.++|+|||||||.||||+++|.++.... .......+....++++++..+++|..++.+ .+.++.+|+++++.+.
T Consensus 142 ~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~ 220 (502)
T PRK08276 142 GADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEK 220 (502)
T ss_pred ceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCC
Confidence 8999999999999999999988744321 111112222346789999999999888544 4578999999988754
Q ss_pred CCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeee
Q 004348 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543 (759)
Q Consensus 464 ~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~ 543 (759)
+++..+++.++++++|++.++|+++..|++.........+++++|.+++|||+++.++++++.+.++ ..+++.
T Consensus 221 ----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~---~~~~~~ 293 (502)
T PRK08276 221 ----FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG---PIIHEY 293 (502)
T ss_pred ----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC---cHhhhh
Confidence 4899999999999999999999999999887643334557899999999999999999999999887 679999
Q ss_pred eccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccC
Q 004348 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (759)
Q Consensus 544 YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~ 623 (759)
||+||++.+++..... .....+++|+|+ ++.++|+|+++++++.|+.|||+++| +.++.||+++++.+...+..
T Consensus 294 yG~tE~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~-- 367 (502)
T PRK08276 294 YASSEGGGVTVITSED-WLAHPGSVGKAV-LGEVRILDEDGNELPPGEIGTVYFEM--DGYPFEYHNDPEKTAAARNP-- 367 (502)
T ss_pred cccccccceeEecCcc-ccccCCCcceec-ccEEEEECCCCCCCcCCCceEEEEEC--CCccchhcCCHHHHHHHhcC--
Confidence 9999998755433221 124557899999 88999999999999999999999999 78999999999998888764
Q ss_pred CcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCc
Q 004348 624 PGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS 684 (759)
Q Consensus 624 ~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~ 684 (759)
+|||+|||+++ +|++|++.|||.+|.+||+|.+|+|+++.++..++.++++|+++++....
T Consensus 368 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 447 (502)
T PRK08276 368 HGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAG 447 (502)
T ss_pred CCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCC
Confidence 58999999998 89999999999999999999999999998888889999999998776555
Q ss_pred HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 685 EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 685 ~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
+.+.++++++++++|+.||+|..++++++||+|++||++|+.|++.+..+.
T Consensus 448 ~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 498 (502)
T PRK08276 448 DALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGR 498 (502)
T ss_pred hhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhh
Confidence 556778999999999999999999999999999999999999999987543
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-59 Score=534.62 Aligned_cols=450 Identities=24% Similarity=0.361 Sum_probs=335.8
Q ss_pred cCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccE
Q 004348 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDV 343 (759)
Q Consensus 264 ~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 343 (759)
++|++|+++++|||+++|++++|+++.++.+++.++|++++++++|+++......+... .+...... .....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~-----~~~~~ 72 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALP---LYSKVVEA-----APAKA 72 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeec---chhhhhhc-----ccceE
Confidence 68999999999999999999999999999999999999999999999765321111111 11111111 11222
Q ss_pred EEEeccCccccccccccCCCCccchhhhcCCCC-------CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHH
Q 004348 344 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT 416 (759)
Q Consensus 344 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~ 416 (759)
+++....... ... .......|++++.... .........++|+++|+|||||||.||||+++|++++.+.
T Consensus 73 i~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~ 148 (499)
T PLN03051 73 IVLPAAGEPV---AVP-LREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCA 148 (499)
T ss_pred EEEeccCccc---CCc-cccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHH
Confidence 2221111000 000 0001233444431100 0111112356899999999999999999999999965443
Q ss_pred HHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHH
Q 004348 417 ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (759)
Q Consensus 417 ~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~ 496 (759)
......+++.++|++++.+|++|+.++ +.++.+|+.|+++++.+.. +++..+++.|+++++|++.++|++++.|+
T Consensus 149 -~~~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~---~~~~~~~~~i~~~~vt~~~~vP~~~~~l~ 223 (499)
T PLN03051 149 -SDGWAHMDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGA---PLGRGFGKFVQDAGVTVLGLVPSIVKAWR 223 (499)
T ss_pred -HHHHHhcCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCC---CCcHHHHHHHHHhCCcEEEeCHHHHHHHH
Confidence 333445788999999999999999985 5788999999999998642 36789999999999999999999999998
Q ss_pred hcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCce
Q 004348 497 RDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ 576 (759)
Q Consensus 497 ~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~ 576 (759)
+.........++++||.+++|||++++++.+++.+.++. ++++++.||+||++...+..... .+.+.+++|+|++|++
T Consensus 224 ~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~ 301 (499)
T PLN03051 224 HTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGY-YKPVIEYCGGTELASGYISSTLL-QPQAPGAFSTASLGTR 301 (499)
T ss_pred hcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccc-cceeEeeeccccccceeeccccc-CCCCCccccCCCCCce
Confidence 754211224577899999999999999999888774321 26799999999987543322211 1235678999999999
Q ss_pred EEEECCCCcccCCC--ceEEEEEecCCCcccccccCChhhHHhhhccc-------CCcEEEeCCeee-------------
Q 004348 577 PVIVDEKGVEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-------FPGYYFTGDGCS------------- 634 (759)
Q Consensus 577 ~~IvD~~g~~vp~g--~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~-------~~g~y~TGDl~~------------- 634 (759)
++|+|++|++++.| +.|||+|+||+.+++.|||+++. ...|+.. ..+||+|||+|+
T Consensus 302 ~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~--~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~ 379 (499)
T PLN03051 302 FVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH--DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRA 379 (499)
T ss_pred EEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc--cceeeecCCccccCCcceeecCCeEEECCCCcEEEEecc
Confidence 99999999999988 58999999954344789998653 2334321 123899999998
Q ss_pred ------ccEeeCHHHHHHHHhc-CCccceEEEEeEecCCCC-eEEEEEE---EEcCCC--CCcHHHHHHHHHHHHhhcCC
Q 004348 635 ------SGHRIGTAEVESALVS-HPQCAEAAVVGVEHEVKG-QGIYAFV---TLVEGV--PYSEELRKSLVLAVRKQIGA 701 (759)
Q Consensus 635 ------~G~rI~~~eIE~~L~~-~p~V~ea~Vv~~~~~~~~-~~lva~V---v~~~~~--~~~~~l~~~l~~~l~~~Lp~ 701 (759)
+|+||+|.|||++|.+ ||+|.+|+|++++++..+ +.++||| +++++. ...+++.+.++++|+++|++
T Consensus 380 ~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~ 459 (499)
T PLN03051 380 DDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNP 459 (499)
T ss_pred CCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCC
Confidence 8999999999999996 999999999999998877 7899999 776653 22355667777788888998
Q ss_pred CccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 702 FAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 702 ~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
|+.|..|+++++||+|++|||+|++|++.+.+.
T Consensus 460 ~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 492 (499)
T PLN03051 460 LFKVSRVKIVPELPRNASNKLLRRVLRDQLKKE 492 (499)
T ss_pred ccCCceEEEcCCCCCCCCccHHHHHHHHHHHHh
Confidence 778888999999999999999999999887654
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=538.60 Aligned_cols=499 Identities=20% Similarity=0.257 Sum_probs=381.5
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
....|++++. .+|+++|+++. .+.+||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~~~~-~~p~~~a~~~~------~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 94 (567)
T PLN02479 22 PLWFLERAAV-VHPTRKSVVHG------SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAG 94 (567)
T ss_pred HHHHHHHHHh-hCCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCC
Confidence 5677888888 89999999975 5689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhc---CCCccEEEEeccCcccccccc
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKS---GISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~vi~~~~~~~~~~~~~ 358 (759)
++++|++|.++.+++.+++++++++++|+++... +...+....+... ......++.+...........
T Consensus 95 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (567)
T PLN02479 95 AVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFF---------TLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQ 165 (567)
T ss_pred cEEEEeccccCHHHHHHHHhhcCceEEEEchhhh---------hHHHHHHHHHhhcccccCCCceEEEecCCcCCccccc
Confidence 9999999999999999999999999999976542 1122222221100 011123333332110000000
Q ss_pred ccCCCCccchhhhcCCCCCCCC-ccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecC
Q 004348 359 KWQDGRDIWWQDVVPKYPTKCE-VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~ 437 (759)
.........|.+.+........ ......+++++|+|||||||.||||+++|++++.. .......+++..++++++.+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~-~~~~~~~~~~~~~~~~~~~~p 244 (567)
T PLN02479 166 YALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLM-ALSNALIWGMNEGAVYLWTLP 244 (567)
T ss_pred cccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHH-HHHHHhhcCCCCCCEEEEecc
Confidence 0001123345555443221111 11223457888999999999999999999995443 333344678889999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|..++...++.+++.|.++++. . +++..+++.++++++|++.++|+++..|.+.... ....+++++|.++++
T Consensus 245 ~~h~~~~~~~~~~~~~~g~~~~~~-~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~l~~~~~~ 318 (567)
T PLN02479 245 MFHCNGWCFTWTLAALCGTNICLR-Q----VTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKS-ETILPLPRVVHVMTA 318 (567)
T ss_pred hhhhhhHHHHHHHHhhcCceEecc-C----CCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhh-cccccccceeEEEEc
Confidence 999888655544556666665542 2 4899999999999999999999999999876431 111256899999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccC-C-------CC-CCCCCCCcCCCCCCce-EEEEC-CCCcc
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-P-------GA-WPQKPGSATFPFFGVQ-PVIVD-EKGVE 586 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~-~-------~~-~~~~~~~iG~p~~g~~-~~IvD-~~g~~ 586 (759)
|++++++++++|.+. + .++++.||+||+++.++... . .. ......+.|.+.+|+. ++|+| +++++
T Consensus 319 G~~~~~~~~~~~~~~-~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~ 394 (567)
T PLN02479 319 GAAPPPSVLFAMSEK-G---FRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKP 394 (567)
T ss_pred CCCCCHHHHHHHHhc-C---CceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcc
Confidence 999999999998774 4 78999999999865432111 0 00 0011235788888875 88999 47888
Q ss_pred cCCC--ceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHH
Q 004348 587 IEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVE 645 (759)
Q Consensus 587 vp~g--~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE 645 (759)
++.+ +.|||+++| ++++.|||++++.+.+.|. +|||+|||+++ +|+||+|.|||
T Consensus 395 ~~~~g~~~GEl~v~g--~~~~~GY~~~~~~t~~~~~---~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE 469 (567)
T PLN02479 395 VPADGKTMGEIVMRG--NMVMKGYLKNPKANEEAFA---NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVE 469 (567)
T ss_pred cCCCCCCceEEEEec--cchhhhhhcCcccccchhc---CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHH
Confidence 8754 689999999 8999999999999988874 68999999987 89999999999
Q ss_pred HHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCc--HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCccc
Q 004348 646 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS--EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723 (759)
Q Consensus 646 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~--~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvd 723 (759)
++|.+||.|.+|+|++.++...++.++++|++.++...+ +.+.++|+++++++||+|++|+.+++ +++|+|++||++
T Consensus 470 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~ 548 (567)
T PLN02479 470 NVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQ 548 (567)
T ss_pred HHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCee
Confidence 999999999999999998877788999999987654321 34467899999999999999998876 789999999999
Q ss_pred HHHHHHHHhc
Q 004348 724 RRILRKIASR 733 (759)
Q Consensus 724 R~~L~~~~~~ 733 (759)
|+.|++.+..
T Consensus 549 r~~L~~~~~~ 558 (567)
T PLN02479 549 KHVLRAKAKE 558 (567)
T ss_pred HHHHHHHHHh
Confidence 9999988654
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=534.38 Aligned_cols=495 Identities=21% Similarity=0.302 Sum_probs=388.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|+++++ .+|+++|+++. ++.+||+||.++++++|.+|.+ .|+++|++|+++++|++++++++|||++
T Consensus 24 ~l~~~l~~~a~-~~p~~~a~~~~------~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 24 SLVDMFEQAVA-RYADQPAFINM------GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred cHHHHHHHHHH-hCCCCceEEEC------CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57889999988 89999999975 6789999999999999999984 8999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccc--
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN-- 357 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-- 357 (759)
+|++++|++|.++.+++.+++++++++++++++... +.+.+.... .....++............
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 162 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFA---------HTLEKVVFK-----TPVKHVILTRMGDQLSTAKGT 162 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEecccc---------HHHHHHhhh-----cCcceEEEecccccccccccc
Confidence 999999999999999999999999999999976532 112221111 1122222111000000000
Q ss_pred -------------cccCCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH
Q 004348 358 -------------TKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (759)
Q Consensus 358 -------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (759)
..........+.+...... .........++++++|+|||||||.||||+++|++++.+... ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~-~~~~ 241 (560)
T PRK08974 163 LVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQ-AKAA 241 (560)
T ss_pred cccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHH-HHHh
Confidence 0000000011111111111 011112346789999999999999999999999996544322 2222
Q ss_pred hC---CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCC
Q 004348 424 FD---YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (759)
Q Consensus 424 ~~---l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~ 500 (759)
+. ...++.++...++.|.+++....+.++..|+++++.... .++..+++.++++++|++..+|++++.|.....
T Consensus 242 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 318 (560)
T PRK08974 242 YGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNP---RDIPGFVKELKKYPFTAITGVNTLFNALLNNEE 318 (560)
T ss_pred hccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCc---cCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC
Confidence 22 234567888889988887666677788899998876432 378889999999999999999999999987643
Q ss_pred cccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEE
Q 004348 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580 (759)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~Iv 580 (759)
....++++||.+++||+++++.++++|.+.+| +++++.||+||++..++..... .....+++|+|++++.++|+
T Consensus 319 --~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~ 392 (560)
T PRK08974 319 --FQELDFSSLKLSVGGGMAVQQAVAERWVKLTG---QYLLEGYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLV 392 (560)
T ss_pred --cccCCccceeEEEecCccCCHHHHHHHHHHhC---CcEEeeecccccCceeeccCCC-CcccCCccccCcCCCEEEEE
Confidence 23346789999999999999999999999876 7899999999998765543222 12346789999999999999
Q ss_pred CCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCH
Q 004348 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGT 641 (759)
Q Consensus 581 D~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~ 641 (759)
|+++++++.|+.|||+|+| +.+++||+++++.+...| .+|||+|||+++ +|++|+|
T Consensus 393 ~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~ 467 (560)
T PRK08974 393 DDDGNEVPPGEPGELWVKG--PQVMLGYWQRPEATDEVI---KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYP 467 (560)
T ss_pred CCCCCCCCCCCceEEEEec--CCcchhhcCChhhhhhhh---hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECH
Confidence 9999999999999999999 899999999998887765 378999999988 7999999
Q ss_pred HHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCc
Q 004348 642 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721 (759)
Q Consensus 642 ~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GK 721 (759)
.|||++|.+||+|.+++|++.++...++.++++|+..+.. .+ .++++++++++|+.|++|..++++++||+|++||
T Consensus 468 ~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~-~~---~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK 543 (560)
T PRK08974 468 NEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS-LT---EEELITHCRRHLTGYKVPKLVEFRDELPKSNVGK 543 (560)
T ss_pred HHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC-CC---HHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCc
Confidence 9999999999999999999999888888888888765432 22 4678999999999999999999999999999999
Q ss_pred ccHHHHHHHHhccc
Q 004348 722 IMRRILRKIASRQL 735 (759)
Q Consensus 722 vdR~~L~~~~~~~~ 735 (759)
++|+.|++....+.
T Consensus 544 ~~r~~l~~~~~~~~ 557 (560)
T PRK08974 544 ILRRELRDEARAKV 557 (560)
T ss_pred EeHHHHHHHHHhhh
Confidence 99999999877553
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=548.65 Aligned_cols=507 Identities=18% Similarity=0.193 Sum_probs=373.9
Q ss_pred ccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 199 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
..++.++|+++++ .+||++|+++.+...+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||+
T Consensus 48 ~~~l~~~l~~~a~-~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 126 (624)
T PRK12582 48 PRSIPHLLAKWAA-EAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAM 126 (624)
T ss_pred ccCHHHHHHHHHH-HCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 3468899999998 899999998753211334789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCH-----HHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccc
Q 004348 279 RIGAVHSVVFAGFSS-----DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353 (759)
Q Consensus 279 kaGav~vpldp~~~~-----~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~ 353 (759)
++|++++|++|.++. +++.+++++++++++|+++... ....+..+.. ..++ ++.+.....
T Consensus 127 ~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----------~~~~~~~~~~--~~~~-~i~~~~~~~- 191 (624)
T PRK12582 127 QAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP-----------FARALAALDL--LDVT-VVHVTGPGE- 191 (624)
T ss_pred HcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH-----------HHHHHHhhhh--cCce-EEEEcCCCc-
Confidence 999999999999985 9999999999999999875421 1111111110 1122 233322110
Q ss_pred cccccccCCCCccchhhhcCCCCCC---CCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCC--
Q 004348 354 TRENTKWQDGRDIWWQDVVPKYPTK---CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP-- 428 (759)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~-- 428 (759)
......|.+........ .......++++++|+|||||||.||||+++|++++.+ .......+....
T Consensus 192 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~~ 262 (624)
T PRK12582 192 --------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCAN-IAMQEQLRPREPDP 262 (624)
T ss_pred --------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHH-HHHHHHhccccCCC
Confidence 00112233333221111 0112346789999999999999999999999996544 333333344444
Q ss_pred -CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc--cccc
Q 004348 429 -SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE--YVTR 505 (759)
Q Consensus 429 -~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~--~~~~ 505 (759)
.++++..+|++|.+++...++.+|..|+++++.++.........+++.++++++|++.++|++++.|++.... ....
T Consensus 263 ~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~ 342 (624)
T PRK12582 263 PPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRR 342 (624)
T ss_pred CCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHH
Confidence 5799999999999987777888999999999975431111224567778899999999999999988764221 1122
Q ss_pred CCCCCeeEEEEeCCCCCHHHHHHHHHHh----CCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC
Q 004348 506 YSRKSLRVLGSVGEPINPSAWRWFFNVV----GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581 (759)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~----g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD 581 (759)
.++++||.+++||+++++++.++|.+.+ |. ++++++.||+||++.++...... ..+.+++|+|++|++++|+
T Consensus 343 ~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~- 418 (624)
T PRK12582 343 SFFKNLRLMAYGGATLSDDLYERMQALAVRTTGH-RIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLA- 418 (624)
T ss_pred HHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCC-CceEEeccccccccceeecccCC--CCCCCCCCcCCCCcEEEEc-
Confidence 3578999999999999999999998863 32 36899999999998755422211 2456789999999999985
Q ss_pred CCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee------------------------ccE
Q 004348 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------------SGH 637 (759)
Q Consensus 582 ~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------------~G~ 637 (759)
+.|+.|||+|+| |+++.|||++|+.+.+.|. .+|||+|||+|+ +|+
T Consensus 419 ------~~G~~GEl~vrg--~~v~~GY~~~p~~t~~~f~--~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~ 488 (624)
T PRK12582 419 ------PVGDKYEVRVKG--PNVTPGYHKDPELTAAAFD--EEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGT 488 (624)
T ss_pred ------cCCCceEEEEEC--CcccccccCCccchhhhcC--ccCCccccceEEecCCcCCCCceEEeccchhhEecCCCc
Confidence 457789999999 8999999999999887764 379999999875 699
Q ss_pred eeCHHHHH--HHHhcCCccceEEEEeEecCCCCeEEEEEEEEcC----------CCC-----CcHHHHHHHHHHH---Hh
Q 004348 638 RIGTAEVE--SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE----------GVP-----YSEELRKSLVLAV---RK 697 (759)
Q Consensus 638 rI~~~eIE--~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~----------~~~-----~~~~l~~~l~~~l---~~ 697 (759)
+|+|.+|| .++.+||.|.+|+|++++++. +.+.|++.. +.. ..+++.+.++..| ++
T Consensus 489 ~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 564 (624)
T PRK12582 489 WVSVGTLRPDAVAACSPVIHDAVVAGQDRAF----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNA 564 (624)
T ss_pred EechHHHHHHHHHhcCcchheEEEEcCCCCc----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHh
Confidence 99998885 688999999999999987664 444444321 110 1122333333222 33
Q ss_pred hcCCCc-cccEEEEeCCCCC------CCCCcccHHHHHHHHhcccCCCCCCCCCCChhhH
Q 004348 698 QIGAFA-APDKIHWAPGLPK------TRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 750 (759)
Q Consensus 698 ~Lp~~~-vP~~iv~v~~lP~------T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~ 750 (759)
.+|.+. +|+++++++++|+ |++||+.|+++.+.|.++++++++. ...|+++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~--~~~~~~~ 622 (624)
T PRK12582 565 EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAE--PPGPDVI 622 (624)
T ss_pred hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcC--CCCCCcc
Confidence 466666 9999999999875 6778889999999999999998864 4666654
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=563.31 Aligned_cols=509 Identities=18% Similarity=0.175 Sum_probs=376.0
Q ss_pred HHHHHHHhhChHHHHHHhhcc----cccccccccccccccccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEE
Q 004348 146 LEMYKRSVEDPAGFWADIASE----FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221 (759)
Q Consensus 146 ~~ll~~~~~~p~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~ 221 (759)
.+-+..++.+|++.+++++.+ +.-...+++ + . . ....++.++|+++++ ++||++|++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~------~----~~~~sl~~ll~~~a~-~~pd~~Al~ 467 (994)
T PRK07868 407 ARGAADAAVAANRSVRTLAVETARTLPRLARLGQ-I-------N------D----HTRISLGRIIAEQAR-DAPKGEFLL 467 (994)
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHhhhhHHHhhh-c-------C------C----CCCccHHHHHHHHHH-HCCCCeEEE
Confidence 344567778899999888531 111122222 1 0 0 111257899999998 899999999
Q ss_pred EEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 004348 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIM 301 (759)
Q Consensus 222 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~ 301 (759)
+. ++.+||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|. +++.++++
T Consensus 468 ~~------~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~ 538 (994)
T PRK07868 468 FD------GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVR 538 (994)
T ss_pred eC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHh
Confidence 86 5789999999999999999999999999999999999999999999999999999999985 68999999
Q ss_pred hcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC-CCCccchhhhcCCC---CC
Q 004348 302 DCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ-DGRDIWWQDVVPKY---PT 377 (759)
Q Consensus 302 ~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~ 377 (759)
++++++||+++... ... ... ...+++++..... ..... ......+.+..... +.
T Consensus 539 ~s~~~~li~~~~~~------------~~~-~~~------~~~iiv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (994)
T PRK07868 539 LGGVTEIITDPTNL------------EAA-RQL------PGRVLVLGGGESR---DLDLPDDADVIDMEKIDPDAVELPG 596 (994)
T ss_pred ccCCeEEEEChHHH------------HHH-Hhc------CceEEEecCCccc---cccCCcchhhhhhhhcCcccccCCc
Confidence 99999999975431 111 111 1334544321100 00000 00011111111100 00
Q ss_pred CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcE
Q 004348 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGAS 457 (759)
Q Consensus 378 ~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~t 457 (759)
........++|++||+|| ||||.||++.++|.+++... ......+++.++|++++.+|++|+.++...++.++..|++
T Consensus 597 ~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~-~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~ 674 (994)
T PRK07868 597 WYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSA-FGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSR 674 (994)
T ss_pred ccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHH-HhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceE
Confidence 001112246899999999 57777777777877644332 2334457889999999999999999965444444445555
Q ss_pred EEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCC
Q 004348 458 VVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537 (759)
Q Consensus 458 lvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~ 537 (759)
+++.+. ++++.+++.|++|+||+++++|++++.|++... ....++++||.++ |+.++++++++|.+.++ .
T Consensus 675 vvl~~~----~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~--~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~--~ 744 (994)
T PRK07868 675 IALSRG----LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA--FVLHGNHPVRLFI--GSGMPTGLWERVVEAFA--P 744 (994)
T ss_pred EEecCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC--CccCCCCceEEEe--cCCCCHHHHHHHHHHhC--c
Confidence 555432 499999999999999999999999999987632 2234677999876 34599999999999987 3
Q ss_pred ccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCc-eEEE-----------ECCCC--cccCCCceEEEEEecCCCc
Q 004348 538 CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVI-----------VDEKG--VEIEGECSGYLCIKSSWPG 603 (759)
Q Consensus 538 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~-~~~I-----------vD~~g--~~vp~g~~GEL~I~g~~~~ 603 (759)
++++|.||+||++.+.. ... ..+++++|+|++|+ +++| +|++| ++++.|+.|||++++ ++
T Consensus 745 ~~l~~~YG~TE~~~~~~-~~~---~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~--~~ 818 (994)
T PRK07868 745 AHVVEFFATTDGQAVLA-NVS---GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARA--RG 818 (994)
T ss_pred hheeeeeeccccccccc-ccC---CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEec--CC
Confidence 78999999999875433 221 23568999999998 5655 35666 678899999999999 43
Q ss_pred ccccccCChhhHHh-hhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEe
Q 004348 604 AFRTLYGDHERYET-TYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663 (759)
Q Consensus 604 v~~GY~~~~e~~~~-~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 663 (759)
|+ +|+.+.. .+|.+.+|||+|||+|+ +|.+|+|.|||++|.+||+|.+|+|++++
T Consensus 819 ----~~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~ 893 (994)
T PRK07868 819 ----PI-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVE 893 (994)
T ss_pred ----CC-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeec
Confidence 33 4544332 24444578999999998 58899999999999999999999999998
Q ss_pred cCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 664 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
++. ++.++|||+++++...+ .++|+++|++ ||+||+|+.|+++++||+|+|||++|++|++...
T Consensus 894 d~~-~~~~~a~Vv~~~~~~~~---~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 894 VGG-RQLAVAAVTLRPGAAIT---AADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred CCC-CceEEEEEEeCCCCcCC---HHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 875 67899999998765444 5789999985 9999999999999999999999999999987644
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=522.91 Aligned_cols=411 Identities=18% Similarity=0.200 Sum_probs=337.9
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 004348 232 TLTYSQLLQQVCQLANYLKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310 (759)
Q Consensus 232 ~lTY~eL~~~a~~lA~~L~~~Gv-~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit 310 (759)
-+.|+||+++++++|++|++.|+ ++|++|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 47899999999999999999998 57999999999999999999999999999999999999999999999999999998
Q ss_pred eCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcE
Q 004348 311 SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390 (759)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 390 (759)
++..... . ... .. . ......+++++
T Consensus 99 ~~~~~~~-----------------------~-----~~~----------------------~~--~---~~~~~~~~~~~ 123 (452)
T PRK07445 99 LDQLKLS-----------------------H-----PPP----------------------LP--S---QGILPNLETGW 123 (452)
T ss_pred cCccccc-----------------------c-----CCC----------------------CC--c---cccCCCCCCcE
Confidence 6542100 0 000 00 0 00113468999
Q ss_pred EEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCCh
Q 004348 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470 (759)
Q Consensus 391 ~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~ 470 (759)
+++|||||||.||||++||++++ .........+++.+ ++.++.+|++|.+|+ +.++.+|+.|+++++.+.. +.
T Consensus 124 ~i~~TSGTTG~PKgV~~t~~~l~-~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~----~~ 196 (452)
T PRK07445 124 IMIPTGGSSGQIRFAIHTWETLT-ASVQGFQRYFQLQQ-VNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYK----RL 196 (452)
T ss_pred EEEeCCCCCCCCcEEEechHHHH-HHHHHHHHHhcCCC-CceEeccCchhhhhH-HHHHHHHHcCCeEEEcChH----hc
Confidence 99999999999999999999954 44444455566665 467888999999885 5788899999999998632 11
Q ss_pred hHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeecccccc
Q 004348 471 GRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550 (759)
Q Consensus 471 ~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~ 550 (759)
........++++|++.++|++++.|++.. ..++++||.+++||+++++++.+++.+ ++ +++++.||+||++
T Consensus 197 ~~~~~~~~~~~~t~~~~vP~~l~~l~~~~-----~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~---~~l~~~YG~TE~~ 267 (452)
T PRK07445 197 KSGQELPPNPSDFFLSLVPTQLQRLLQLR-----PQWLAQFRTILLGGAPAWPSLLEQARQ-LQ---LRLAPTYGMTETA 267 (452)
T ss_pred cchhhhhhhcCceEEEehHHHHHHHHhhC-----hhhhhcceEEEECCccCCHHHHHHHHh-cC---CeEecCcchhhhc
Confidence 22233445789999999999999998632 125789999999999999999988765 34 7899999999998
Q ss_pred ceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeC
Q 004348 551 GFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630 (759)
Q Consensus 551 ~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TG 630 (759)
..++...+.......+++|+|+++++++|+ .|+.|||+|+| |+++.||++++. ..+|||+||
T Consensus 268 ~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~--------~g~~Gel~v~g--~~~~~gY~~~~~--------~~~g~~~TG 329 (452)
T PRK07445 268 SQIATLKPDDFLAGNNSSGQVLPHAQITIP--------ANQTGNITIQA--QSLALGYYPQIL--------DSQGIFETD 329 (452)
T ss_pred ccccccCchhhccCCCcCCccCCCCeEEEc--------CCCcceEEEeC--CccchhhcCCcc--------CCCCEEECC
Confidence 654432222212345689999999999997 35689999999 899999998642 237899999
Q ss_pred Ceee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHH
Q 004348 631 DGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSL 691 (759)
Q Consensus 631 Dl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l 691 (759)
|+|+ +|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|+.+++.. + .++|
T Consensus 330 Dl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~-~---~~~l 405 (452)
T PRK07445 330 DLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI-S---LEEL 405 (452)
T ss_pred CEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCC-C---HHHH
Confidence 9998 899999999999999999999999999999888899999999876532 2 5789
Q ss_pred HHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 692 ~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
+++++++|+.|++|+.++++++||+|++||++|++|++++.+++
T Consensus 406 ~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 449 (452)
T PRK07445 406 KTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL 449 (452)
T ss_pred HHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=577.84 Aligned_cols=482 Identities=20% Similarity=0.229 Sum_probs=378.3
Q ss_pred HHHHHHhhcccccCC-CeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLG-DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~p-d~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.+.|+++++ ++| +++|+.+. .++++||+||+++++++|+.|++ |+++||+|+++++|++|+++++|||++
T Consensus 632 ~~~~~l~~~~~-~~~~~~~ai~~~-----~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~ 704 (1140)
T PRK06814 632 TLFEALIEAAK-IHGFKKLAVEDP-----VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQS 704 (1140)
T ss_pred CHHHHHHHHHH-HcCCCCeEeECC-----CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHH
Confidence 35667777777 565 67777642 15789999999999999999975 999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|+||.++.+++.+++++++++++|+++......+ ..+..+.+ .....++.+++... ...
T Consensus 705 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------~~~~~~~~----~~~~~~i~~~~~~~----~~~ 769 (1140)
T PRK06814 705 AGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKAR-------LGPLIEAL----EFGIRIIYLEDVRA----QIG 769 (1140)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhc-------chhHHHHh----ccCceEEEehHhhc----cCC
Confidence 9999999999999999999999999999999865321100 01111111 12223444432110 000
Q ss_pred cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
....+.+......+..+.....++|+++|+|||||||.||||+++|+++ .+........++++++|++++.+|+.
T Consensus 770 ----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~-~~~~~~~~~~~~~~~~d~~l~~~pl~ 844 (1140)
T PRK06814 770 ----LADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNL-LANRAQVAARIDFSPEDKVFNALPVF 844 (1140)
T ss_pred ----hHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHH-HHHHHHHHHhhCCCCcCEEEEecchH
Confidence 0000111111111111111356899999999999999999999999995 44455556678899999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..++...++.++.+|+++++.+.. .+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||
T Consensus 845 h~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~----~~~~~~~lr~v~~gg~ 917 (1140)
T PRK06814 845 HSFGLTGGLVLPLLSGVKVFLYPSP---LHYRIIPELIYDTNATILFGTDTFLNGYARYA----HPYDFRSLRYVFAGAE 917 (1140)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCc---ccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc----ccccccceeEEEEcCC
Confidence 9998778889999999999998642 36677899999999999999999999987753 2346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++.+++.+.++ ++++|.||+||++...+...+. ..+.+++|+|++|+++++.|..+ .|+.|||+|+|
T Consensus 918 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~~~~----~~~~Gel~v~g 988 (1140)
T PRK06814 918 KVKEETRQTWMEKFG---IRILEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEPVPG----IDEGGRLFVRG 988 (1140)
T ss_pred cCCHHHHHHHHHHhC---CcEEeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEeecCC----CCCceEEEEeC
Confidence 999999999999886 7899999999998765543221 24567899999999999987543 35689999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVV 660 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv 660 (759)
++++.||+++++..... ...+|||+|||+++ +|+||+|.|||++|.+|+.|.+++|+
T Consensus 989 --~~~~~gY~~~~~~~~~~--~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv 1064 (1140)
T PRK06814 989 --PNVMLGYLRAENPGVLE--PPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAV 1064 (1140)
T ss_pred --CCcchhhcCCCCCCccc--cCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEE
Confidence 89999999986432211 12478999999998 89999999999999999999999999
Q ss_pred eEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
+++++..++.+++++.. . ..+ .++++++++++ +++|++|..|+++++||+|++||+||++|++++.+..
T Consensus 1065 ~~~~~~~g~~~~~~~~~-~--~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814 1065 SIPDARKGERIILLTTA-S--DAT---RAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred EcccCCCCceEEEEEcC-C--CcC---HHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhh
Confidence 99998888888877642 1 222 46788888865 9999999999999999999999999999999887653
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=521.00 Aligned_cols=475 Identities=21% Similarity=0.247 Sum_probs=376.6
Q ss_pred EEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHH
Q 004348 218 VAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297 (759)
Q Consensus 218 ~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~ 297 (759)
.|++.+ ++.+||.||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.
T Consensus 3 ~~~~~~------~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~ 76 (509)
T PRK12406 3 ATIISG------DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIA 76 (509)
T ss_pred eEEEEC------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHH
Confidence 466654 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcc----cccc-ccccCCCCccchhhhc
Q 004348 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA----MTRE-NTKWQDGRDIWWQDVV 372 (759)
Q Consensus 298 ~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~----~~~~-~~~~~~~~~~~~~~~~ 372 (759)
++++++++++++++..... .+.+ .. +....++....... .... ...........|++..
T Consensus 77 ~~l~~~~~~~i~~~~~~~~---------~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (509)
T PRK12406 77 YILEDSGARVLIAHADLLH---------GLAS---AL----PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWL 140 (509)
T ss_pred HHHhccCCcEEEEccchhh---------hhhh---hh----hcccceeecccccccccccccccccccCCCCccCHHHHh
Confidence 9999999999998765321 1111 11 00011111111000 0000 0000111233444443
Q ss_pred CCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHH--HHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHH
Q 004348 373 PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV--HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYG 450 (759)
Q Consensus 373 ~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~--~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~ 450 (759)
...+ +.....++++++|+|||||||.||||+++|..... .........+++.++++++...++.|..++.+. +.
T Consensus 141 ~~~~---~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~ 216 (509)
T PRK12406 141 AQQE---PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYG-LR 216 (509)
T ss_pred cccC---ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHH-HH
Confidence 2211 11234578999999999999999999998765321 112233456788999999999999998875444 55
Q ss_pred HhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHH
Q 004348 451 PMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFF 530 (759)
Q Consensus 451 ~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 530 (759)
++..|+++++.+. .+++.++++++++++|++.++|+++..|++.........+++++|.+++||+++++++++++.
T Consensus 217 ~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~ 292 (509)
T PRK12406 217 AGRLGGVLVLQPR----FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMI 292 (509)
T ss_pred HHhhheEEEEccC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHH
Confidence 7889999988753 489999999999999999999999999987654333445789999999999999999999999
Q ss_pred HHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccc-ccc
Q 004348 531 NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR-TLY 609 (759)
Q Consensus 531 ~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~-GY~ 609 (759)
+.++ +.+++.||+||++.+++.... .....++++|+|++++.++|+|+++++++.|+.|||+++| ++++. ||+
T Consensus 293 ~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~~~y~ 366 (509)
T PRK12406 293 EWWG---PVIYEYYGSTESGAVTFATSE-DALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRI--AGNPDFTYH 366 (509)
T ss_pred HHcC---CcEEeeccccccCceEecCcc-cccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEEC--Ccccccccc
Confidence 9886 679999999999976543322 1224567899999999999999999999999999999999 77765 999
Q ss_pred CChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeE
Q 004348 610 GDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 670 (759)
Q Consensus 610 ~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~ 670 (759)
++++.+...+ .+|||+|||+++ +|++|+|.|||++|.+||+|.+++|++.++...++.
T Consensus 367 ~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 443 (509)
T PRK12406 367 NKPEKRAEID---RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEA 443 (509)
T ss_pred CCchhccccc---CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCce
Confidence 9988765542 378999999988 799999999999999999999999999988877888
Q ss_pred EEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 671 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 671 lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
++++|++.++...+ .++|++++++.|++|++|..++++++||+|++||++|+.|++.+...
T Consensus 444 ~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 444 LMAVVEPQPGATLD---EADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred eEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence 99999987654333 57899999999999999999999999999999999999999887643
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=535.20 Aligned_cols=486 Identities=20% Similarity=0.200 Sum_probs=373.4
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
.++.++|+..++ .+|+.+++ ... .+..+.+||.||+++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 21 ~~~~~~~~~~~~-~~~~~~~~-~~~--~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 96 (579)
T PRK09192 21 PTLVEALDYAAL-GEAGMNFY-DRR--GQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQY 96 (579)
T ss_pred hhHHHHHHHhhc-cCCceEEE-ecC--CCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 378999999887 67755543 221 12247899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCC-------HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcc
Q 004348 280 IGAVHSVVFAGFS-------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (759)
Q Consensus 280 aGav~vpldp~~~-------~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (759)
+|++++|+++.++ .+++.++++.++++++|+++... +.+.+.... .....++
T Consensus 97 ~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~---------~~~~~~~~~-----~~~~~~~------- 155 (579)
T PRK09192 97 AGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELL---------PWVNEATHG-----NPLLHVL------- 155 (579)
T ss_pred cCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHH---------HHHHHhhcc-----cccccee-------
Confidence 9999999987543 68999999999999999976531 222211111 0111111
Q ss_pred ccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHH-HhCCCCCcE
Q 004348 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-AFDYKPSDV 431 (759)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~-~~~l~~~d~ 431 (759)
.|.++..............+++++||+|||||||.||||+++|++++.+. ..... .+++.++|+
T Consensus 156 --------------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~-~~~~~~~~~~~~~d~ 220 (579)
T PRK09192 156 --------------SHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANL-RAISHDGLKVRPGDR 220 (579)
T ss_pred --------------ehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHH-HHHHhhcccCCCCCe
Confidence 11111111111111223467899999999999999999999999965544 33444 788999999
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc-ccccCCCCC
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKS 510 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~-~~~~~~l~s 510 (759)
+++..|+.|+.++...++.++..|+++++........++..+++++.++++|+++..|.++..+...... .....++++
T Consensus 221 ~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 300 (579)
T PRK09192 221 CVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSC 300 (579)
T ss_pred EEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhh
Confidence 9999999999997777888899999998765322223688999999999999887766666665543211 122356889
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhCCCC---ccEeeeeccccccceecccCCCCC--------------------------
Q 004348 511 LRVLGSVGEPINPSAWRWFFNVVGDSR---CPISDTWWQTETGGFMITPLPGAW-------------------------- 561 (759)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~---~~l~n~YG~TE~~~~~~~~~~~~~-------------------------- 561 (759)
+|.+++||++++++++++|.+.++..+ ..+++.||+||++...+.......
T Consensus 301 lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (579)
T PRK09192 301 WRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRR 380 (579)
T ss_pred hheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCcc
Confidence 999999999999999999998875211 358999999999865543211100
Q ss_pred CCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------
Q 004348 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------- 634 (759)
Q Consensus 562 ~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------- 634 (759)
.....++|+|++|++++|+|+++++++.|+.|||+|+| +++++|||++ +.+.+.+. .+|||+|||+|+
T Consensus 381 ~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g--~~~~~gY~~~-~~~~~~~~--~dgw~~TGDlg~~~~G~l~ 455 (579)
T PRK09192 381 VRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRG--PSLMSGYFRD-EESQDVLA--ADGWLDTGDLGYLLDGYLY 455 (579)
T ss_pred ceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecC--CchhhhhcCC-cccccccc--CCceeeccceeeEECCEEE
Confidence 01124789999999999999999999999999999999 8999999999 55555443 378999999987
Q ss_pred -----------ccEeeCHHHHHHHHhcCCccc--eEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcC-
Q 004348 635 -----------SGHRIGTAEVESALVSHPQCA--EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG- 700 (759)
Q Consensus 635 -----------~G~rI~~~eIE~~L~~~p~V~--ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp- 700 (759)
+|+||+|.|||++|.+||+|. +|+|++++++. ++.++++|+..++.. ...++|++++++.+.
T Consensus 456 ~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~---~~~~~l~~~~~~~l~~ 531 (579)
T PRK09192 456 ITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDE---ERRGQLIHALAALVRS 531 (579)
T ss_pred EEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCCh---HHHHHHHHHHHHHHHH
Confidence 899999999999999999998 89999998875 558888888765432 225677888888764
Q ss_pred CCccccEEEEeC--CCCCCCCCcccHHHHHHHHhcc
Q 004348 701 AFAAPDKIHWAP--GLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 701 ~~~vP~~iv~v~--~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
.+++|..+++++ +||+|++||++|++|++++..-
T Consensus 532 ~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~ 567 (579)
T PRK09192 532 EFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLSG 567 (579)
T ss_pred HhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHcC
Confidence 588998888885 8999999999999999987643
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=531.80 Aligned_cols=493 Identities=20% Similarity=0.221 Sum_probs=363.4
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCC---CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
+.++|++++. .+|+++|+++.+.. .+..+.+||+||.++++++|++|.++| ++||+|+|+++|++++++++|||+
T Consensus 3 ~~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 3 VPSLLRERAS-LQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred HHHHHHHHHh-cCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 5678888888 89999999975321 122478999999999999999999999 689999999999999999999999
Q ss_pred HhCCeEEecCC---CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccc
Q 004348 279 RIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (759)
Q Consensus 279 kaGav~vpldp---~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (759)
++|++++|+++ .++.+++.++|+++++++||+++... +.+.+..... .......++..+...
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~---- 145 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVV---------DDVTEYVAPQ--PGQSAPPVIEVDLLD---- 145 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHH---------HHHHHHHhhc--ccccccceEeecccc----
Confidence 99999999997 55789999999999999999976532 1111111110 000111122111100
Q ss_pred cccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhC-----CCCCc
Q 004348 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSD 430 (759)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~-----l~~~d 430 (759)
+. . ..........++++++|+|||||||.||||+++|++++.+........+. ...++
T Consensus 146 ------------~~----~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
T PRK05850 146 ------------LD----S-PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT 208 (578)
T ss_pred ------------cc----c-CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcc
Confidence 00 0 00001123457899999999999999999999999965543333322233 35578
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHH-HHHHHhcCC-cccccCCC
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL-VRSLMRDGN-EYVTRYSR 508 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~-l~~l~~~~~-~~~~~~~l 508 (759)
++++..|+.|+.++++.++.+++.|+++++.+......++..+++++++++++++ .+|++ +..+..... ......++
T Consensus 209 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~ 287 (578)
T PRK05850 209 TVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDL 287 (578)
T ss_pred eEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcch
Confidence 9999999999999888899999999999998642222378999999999999866 45554 444433211 11223467
Q ss_pred CCeeEEEEeCCCCCHHHHHHHHHHhCC---CCccEeeeeccccccceecccCCCCC-----------------------C
Q 004348 509 KSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW-----------------------P 562 (759)
Q Consensus 509 ~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~l~n~YG~TE~~~~~~~~~~~~~-----------------------~ 562 (759)
+++|.+++||++++++++++|.+.++. ++..+++.||+||++..+........ .
T Consensus 288 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 367 (578)
T PRK05850 288 GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGG 367 (578)
T ss_pred hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCC
Confidence 899999999999999999999988742 23478999999998754432211100 0
Q ss_pred CCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc---------cCCcEEEeCCe
Q 004348 563 QKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTGDG 632 (759)
Q Consensus 563 ~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~---------~~~g~y~TGDl 632 (759)
....++|.|. +.+++|+|+ ++++++.|+.|||+|+| ++++.|||++++.+.+.|.. ..+|||+|||+
T Consensus 368 ~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl 444 (578)
T PRK05850 368 TPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHG--DNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDL 444 (578)
T ss_pred ceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEec--CcccccccCChhhhHHHhhcccccccccCCCCCeeeccce
Confidence 0112346664 578999995 57899999999999999 89999999999999988742 12469999999
Q ss_pred ee------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHH---HHHHH
Q 004348 633 CS------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEE---LRKSL 691 (759)
Q Consensus 633 ~~------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~---l~~~l 691 (759)
|+ +|++|+|.|||++|.+||.+ +++|++++++ .++.++++|+++++...+++ ..+++
T Consensus 445 ~~~~~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l 522 (578)
T PRK05850 445 GFISEGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTV 522 (578)
T ss_pred eeEECCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHH
Confidence 87 89999999999999999995 5888888887 67889999998866432221 23455
Q ss_pred HHHHHhhcCC--CccccEEEEeC--CCCCCCCCcccHHHHHHHHhcc
Q 004348 692 VLAVRKQIGA--FAAPDKIHWAP--GLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 692 ~~~l~~~Lp~--~~vP~~iv~v~--~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
++.+...++. ...|..+++++ +||+|++|||+|++|++.+...
T Consensus 523 ~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 523 KREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 6665555442 23576677775 8999999999999999998653
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=515.61 Aligned_cols=488 Identities=21% Similarity=0.244 Sum_probs=374.8
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+..+.|++.++ .+|+++|+.+. +..+||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~~~~~~~~~~~-~~~~~~a~~~~------~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~ 91 (545)
T PRK08162 19 TPLSFLERAAE-VYPDRPAVIHG------DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMA 91 (545)
T ss_pred CHHHHHHHHHH-HCCCCeEEEEC------CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 35677888888 89999999876 578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++++++... ..+.+....+ +.. ..+.++..... ....
T Consensus 92 G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~~-~~~~~~~~~~~---~~~~ 154 (545)
T PRK08162 92 GAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFA---------EVAREALALL----PGP-KPLVIDVDDPE---YPGG 154 (545)
T ss_pred CcEEeccccccChHHHHHHHHhCCCeEEEEccchh---------hHHHHHHhhC----CCC-ceEEEecCccc---cccC
Confidence 99999999999999999999999999999987642 2233322222 111 12222211100 0000
Q ss_pred CCCCccchhhhcCCCCCCCCc-cccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEV-EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.......|.+.+......... ...+.+++++|+|||||||.||||+++|+++..+.... ...+++..++++++..|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~-~~~~~~~~~~~~l~~~pl~ 233 (545)
T PRK08162 155 RFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN-ILAWGMPKHPVYLWTLPMF 233 (545)
T ss_pred CCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH-HHhcCCCCCCeeEeccCcH
Confidence 001122344443332211111 12244679999999999999999999999855544333 4456788889999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|..+..+.++.++ .|++.++... +++..+++.|+++++|++.++|++++.|++.... ....+.+++.++++|+
T Consensus 234 h~~~~~~~~~~~~-~~g~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~~~~g~ 306 (545)
T PRK08162 234 HCNGWCFPWTVAA-RAGTNVCLRK----VDPKLIFDLIREHGVTHYCGAPIVLSALINAPAE--WRAGIDHPVHAMVAGA 306 (545)
T ss_pred hhhhHHHHHHHHH-HccEEEEeCC----CCHHHHHHHHHHcCCeEEEechHHHHHHHhCccc--cccCCccceEEEECCC
Confidence 9888655544444 4555555432 4899999999999999999999999999876432 1223456777889999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC-C--------CCCCCCCcCCCCCC-ceEEEECC-CCcccC
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-A--------WPQKPGSATFPFFG-VQPVIVDE-KGVEIE 588 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~-~--------~~~~~~~iG~p~~g-~~~~IvD~-~g~~vp 588 (759)
++++++.+++.+. + +++++.||+||+++........ . ......+.|.+++. ..++|+|+ ++++++
T Consensus 307 ~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~ 382 (545)
T PRK08162 307 APPAAVIAKMEEI-G---FDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVP 382 (545)
T ss_pred CCCHHHHHHHHHh-C---CceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccC
Confidence 9999999988764 4 7899999999986543322110 0 01123456766653 35788895 788887
Q ss_pred C-C-ceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHH
Q 004348 589 G-E-CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESA 647 (759)
Q Consensus 589 ~-g-~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~ 647 (759)
. | +.|||+|+| +.++.||+++++.+...|. +|||+|||+++ +|+||+|.|||++
T Consensus 383 ~~g~~~Gel~v~g--~~~~~gY~~~~~~~~~~~~---~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~ 457 (545)
T PRK08162 383 ADGETIGEIMFRG--NIVMKGYLKNPKATEEAFA---GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDV 457 (545)
T ss_pred CCCCceeEEEEec--CcchhhhcCChhhhHHHhh---CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHH
Confidence 6 3 479999999 8899999999999988773 68999999987 8999999999999
Q ss_pred HhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHH
Q 004348 648 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727 (759)
Q Consensus 648 L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L 727 (759)
|.+||+|.+++|++.+++..++.++++|+++++...+ .++|+++++++||.|++|..+++ +++|+|++||++|+.|
T Consensus 458 l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l 533 (545)
T PRK08162 458 LYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT---EEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVL 533 (545)
T ss_pred HHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC---HHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHH
Confidence 9999999999999998887788999999988765433 57899999999999999999875 6899999999999999
Q ss_pred HHHHhc
Q 004348 728 RKIASR 733 (759)
Q Consensus 728 ~~~~~~ 733 (759)
++.+..
T Consensus 534 ~~~~~~ 539 (545)
T PRK08162 534 REQAKS 539 (545)
T ss_pred HHHHhh
Confidence 988654
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=511.96 Aligned_cols=429 Identities=19% Similarity=0.162 Sum_probs=356.7
Q ss_pred HhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEE
Q 004348 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (759)
Q Consensus 206 l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~v 285 (759)
.+++++ .+|+++|++.. ++.+||+||.++++++|..|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus 9 ~~~~a~-~~~~~~a~~~~------~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v 81 (458)
T PRK09029 9 WRHWAQ-VRPQAIALRLN------DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVL 81 (458)
T ss_pred HHHHHH-hCCCceeeecC------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEe
Confidence 345566 79999999865 67899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCc
Q 004348 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (759)
Q Consensus 286 pldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (759)
|+++.++.+++..++++++++++++++.... +. .+.... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~-----------~~~~~~-~------------------ 121 (458)
T PRK09029 82 PLNPQLPQPLLEELLPSLTLDFALVLEGENT----------FS-----------ALTSLH-L------------------ 121 (458)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcCcccc----------hh-----------hccccc-c------------------
Confidence 9999999999999999999999998765321 00 000000 0
Q ss_pred cchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhh
Q 004348 366 IWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445 (759)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~ 445 (759)
.. ..........++++++++|||||||.||||+++|++++.+ .......+++.++|+++...|+.|.+++
T Consensus 122 ---~~-----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~g~- 191 (458)
T PRK09029 122 ---QL-----VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLAS-AEGVLSLMPFTAQDSWLLSLPLFHVSGQ- 191 (458)
T ss_pred ---cc-----ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHH-HHHHhhcCCCCccceEEEecCcHhhhhh-
Confidence 00 0001112346788999999999999999999999996544 4445566889999999999999999885
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHH
Q 004348 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (759)
Q Consensus 446 ~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~ 525 (759)
..++.+|..|+++++.+. ..+++.+. ++|.+..+|+++..|+..... ..++|.+++||+++++.+
T Consensus 192 ~~~~~~l~~G~~v~~~~~-------~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~------~~~l~~i~~gG~~~~~~~ 256 (458)
T PRK09029 192 GIVWRWLYAGATLVVRDK-------QPLEQALA--GCTHASLVPTQLWRLLDNRSE------PLSLKAVLLGGAAIPVEL 256 (458)
T ss_pred HHHHHHHhCCceEEeCCh-------HHHHHHHh--hceeeecChHHHHHHHhcccc------CCcceEEEECCCCCCHHH
Confidence 456778999999998642 45777774 799999999999988876432 347999999999999999
Q ss_pred HHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCccc
Q 004348 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAF 605 (759)
Q Consensus 526 ~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~ 605 (759)
.+++.+. + +++++.||+||++...+.... ....++|+|++++.++|+| |||+|+| +.++
T Consensus 257 ~~~~~~~-g---~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~-----------gel~v~g--~~~~ 315 (458)
T PRK09029 257 TEQAEQQ-G---IRCWCGYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD-----------GEIWLRG--ASLA 315 (458)
T ss_pred HHHHHHc-C---CcEeccccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC-----------CEEEEec--Ccee
Confidence 9988764 5 789999999999865443221 1234699999999999986 8999999 8999
Q ss_pred ccccCChhhHHhhhcccCCcEEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCC
Q 004348 606 RTLYGDHERYETTYFKPFPGYYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVK 667 (759)
Q Consensus 606 ~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~ 667 (759)
.||+++++.+... ..+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++++++..
T Consensus 316 ~gY~~~~~~~~~~---~~~~~~~TGD~~~~~~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ 392 (458)
T PRK09029 316 LGYWRQGQLVPLV---NDEGWFATRDRGEWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEF 392 (458)
T ss_pred eeeecCccccccc---cCCCccCCCCcEEEeCCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCccc
Confidence 9999998776432 2478999999987 899999999999999999999999999999888
Q ss_pred CeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 668 GQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 668 ~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
++.++++|+.+... + .++|+++++++||+|++|..+++++++|+|.+||++|+.|++++....
T Consensus 393 ~~~~~a~v~~~~~~--~---~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 393 GQRPVAVVESDSEA--A---VVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQL 455 (458)
T ss_pred CceEEEEEEcCccc--C---HHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhcc
Confidence 89999999876432 2 578999999999999999999999999999999999999999988643
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-56 Score=499.45 Aligned_cols=498 Identities=21% Similarity=0.297 Sum_probs=368.2
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~i 271 (759)
.|..-...+.+..++.+++. .+|+.+|+.+... +..+.+||+|+.+++.++|++|+++|+..||+|+|++.|++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~--~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~ 84 (613)
T COG1022 8 AWEDVAEIHTLPKRLAERVK-DRPDGVALMYKEL--GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWA 84 (613)
T ss_pred cchhhhhcccHHHHHHHHhh-cCCcceeEeeecC--CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence 34433444567788888888 8999889987652 56899999999999999999999999977999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEe----
Q 004348 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY---- 347 (759)
Q Consensus 272 va~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~---- 347 (759)
++.+||+.+|++.||+.++.+++.++++|+++++++||+++... .+.+......+ +.+...+..
T Consensus 85 i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~ 152 (613)
T COG1022 85 IADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQEL--------LDLVLPVLEDC----PKVVDLIVIIDLV 152 (613)
T ss_pred HHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHH--------HHHHHhhhccc----cchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999987532 11121111111 000000000
Q ss_pred ccCccccccccccC---CCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHh
Q 004348 348 ENQSAMTRENTKWQ---DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424 (759)
Q Consensus 348 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~ 424 (759)
...... ....+. ......+ ............+..++|+|.|+|||||||.||||++||+|++.+ .......+
T Consensus 153 ~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~-v~~~~~~~ 227 (613)
T COG1022 153 REAVEA--KALVLEVFPDEGISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQ-VAGIDEVL 227 (613)
T ss_pred hhccch--hhccccccccccchhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHH-HHHHHhhC
Confidence 000000 000000 0001111 111111122224578999999999999999999999999996555 55566667
Q ss_pred C-CCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCC---
Q 004348 425 D-YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN--- 500 (759)
Q Consensus 425 ~-l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~--- 500 (759)
. +.++|++++++|++|++..+++....+..|+++... .++..+++.+.++++|++..+|.+|+.+-+.-.
T Consensus 228 ~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~------~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv 301 (613)
T COG1022 228 PPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK------EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKV 301 (613)
T ss_pred CCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec------CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHH
Confidence 5 899999999999999998766555555555555443 388999999999999999999999987732200
Q ss_pred --cccc----------------------------------------cCCC-CCeeEEEEeCCCCCHHHHHHHHHHhCCCC
Q 004348 501 --EYVT----------------------------------------RYSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSR 537 (759)
Q Consensus 501 --~~~~----------------------------------------~~~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~ 537 (759)
.... +..+ ..+|.+++||.+|++++..+++.. |
T Consensus 302 ~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-G--- 377 (613)
T COG1022 302 AKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-G--- 377 (613)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-C---
Confidence 0000 0011 479999999999999999888775 4
Q ss_pred ccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHh
Q 004348 538 CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (759)
Q Consensus 538 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~ 617 (759)
+++..+||+|||+..++...+.. ...+++|+|+|+++++|.|+ |||+|+| |.||+|||++|+.|.+
T Consensus 378 i~i~eGYGlTEts~~~~v~~~~~--~~~gtvG~p~p~~evKI~d~----------GEilVRG--~~Vm~GYyk~pe~Tae 443 (613)
T COG1022 378 IPILEGYGLTETSAVVSVNPPDR--FVLGTVGKPLPGIEVKIADD----------GEILVRG--PNVMKGYYKNPEATAE 443 (613)
T ss_pred CCeEEEecccccccceEEccccC--cccCCcCCcCCCceEEEccC----------ceEEEec--chhcchhcCChHHHhh
Confidence 99999999999998877665543 57889999999999999993 9999999 9999999999999999
Q ss_pred hhcccCCcEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEE
Q 004348 618 TYFKPFPGYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677 (759)
Q Consensus 618 ~~~~~~~g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 677 (759)
.|.. +|||+|||+|. +|+.|.|..||+.+.++|-|.+++|++ .+ ...++|.|++
T Consensus 444 af~~--DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~---k~~~~AlIvp 517 (613)
T COG1022 444 AFTE--DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DD---KKFLVALIVP 517 (613)
T ss_pred hccc--cCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cC---CcceEEEEeC
Confidence 9976 99999999987 899999999999999999999999998 32 3458899998
Q ss_pred cCCCC------------Cc-------HHHHHHHHHHH---HhhcCCCccccEEEEeC-CCC-----CCCCCcccHHHHHH
Q 004348 678 VEGVP------------YS-------EELRKSLVLAV---RKQIGAFAAPDKIHWAP-GLP-----KTRSGKIMRRILRK 729 (759)
Q Consensus 678 ~~~~~------------~~-------~~l~~~l~~~l---~~~Lp~~~vP~~iv~v~-~lP-----~T~~GKvdR~~L~~ 729 (759)
..+.- .+ ..+.+.+...+ ..++..+..+..++.++ ++. +|+.-|+.|+.+.+
T Consensus 518 ~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~ 597 (613)
T COG1022 518 DFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILD 597 (613)
T ss_pred CHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHH
Confidence 64310 01 11222222222 22234455666666554 333 68999999999999
Q ss_pred HHhcccCCCC
Q 004348 730 IASRQLDELG 739 (759)
Q Consensus 730 ~~~~~~~~~~ 739 (759)
.+...++..+
T Consensus 598 ~~~~~i~~~y 607 (613)
T COG1022 598 RYKDEIEAVY 607 (613)
T ss_pred hhhhHHHHHh
Confidence 8887765543
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=487.90 Aligned_cols=384 Identities=16% Similarity=0.169 Sum_probs=330.7
Q ss_pred ceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEE
Q 004348 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (759)
Q Consensus 230 ~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~ii 309 (759)
++++||+||.++++++|+.|. +|+++|++|+|+++|++++++++||++++|++++|+++..+.+++..+++++++++++
T Consensus 6 ~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i 84 (414)
T PRK08308 6 DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLL 84 (414)
T ss_pred CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEE
Confidence 678999999999999999985 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCc
Q 004348 310 TSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389 (759)
Q Consensus 310 t~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 389 (759)
+++.... + .. .....++++
T Consensus 85 ~~~~~~~----------------------------~--~~-------------------------------~~~~~~~~~ 103 (414)
T PRK08308 85 YGESDFT----------------------------K--LE-------------------------------AVNYLAEEP 103 (414)
T ss_pred ecCcccc----------------------------c--cc-------------------------------CCCCCCCCc
Confidence 8653100 0 00 001346789
Q ss_pred EEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCC
Q 004348 390 LFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469 (759)
Q Consensus 390 a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d 469 (759)
++|+|||||||.||||+++|++++ .........+++..+|+++...|+.|.+++...++.+|..|+++++.+. ++
T Consensus 104 ~~i~~TSGtTG~PKgv~~s~~~l~-~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~~ 178 (414)
T PRK08308 104 SLLQYSSGTTGEPKLIRRSWTEID-REIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN----KN 178 (414)
T ss_pred eEEEECCCCCCCCcEEEEehHhHH-HHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC----CC
Confidence 999999999999999999999954 4455555668888999999999999999887889999999999999864 48
Q ss_pred hhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccc
Q 004348 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET 549 (759)
Q Consensus 470 ~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~ 549 (759)
+..+++.++++++|++.++|+++..|.+.... ..+++.++++|++++++++++|.+. + .++++.||+||+
T Consensus 179 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------~~~l~~~~~~G~~l~~~~~~~~~~~-~---~~~~~~YG~tE~ 248 (414)
T PRK08308 179 PKFALNILRNTPQHILYAVPLMLHILGRLLPG------TFQFHAVMTSGTPLPEAWFYKLRER-T---TYMMQQYGCSEA 248 (414)
T ss_pred HHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc------cccccEEEEccCCCCHHHHHHHHHh-C---ChhhhccCcccc
Confidence 89999999999999999999999999876431 1368899999999999999999886 2 689999999999
Q ss_pred cceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEe
Q 004348 550 GGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFT 629 (759)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~T 629 (759)
+.+..... ...++++|+|++++++++.++. |..|||++++ .++||+|
T Consensus 249 ~~~~~~~~----~~~~~~~G~p~~~~~~~~~~~~------~~~gel~v~~-----------------------~~~~~~T 295 (414)
T PRK08308 249 GCVSICPD----MKSHLDLGNPLPHVSVSAGSDE------NAPEEIVVKM-----------------------GDKEIFT 295 (414)
T ss_pred CCeeecCC----CCCCCccCccCCCeEEEEecCC------CCCceEEEEc-----------------------CCceEEC
Confidence 86543221 1345789999999999997643 4579999986 1579999
Q ss_pred CCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHH
Q 004348 630 GDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKS 690 (759)
Q Consensus 630 GDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~ 690 (759)
||+|+ +|+||+|.|||++|.+||+|.+|+|++++++..++.++++++.++... .++
T Consensus 296 GDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~~-----~~~ 370 (414)
T PRK08308 296 KDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEID-----PVQ 370 (414)
T ss_pred CceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC-----HHH
Confidence 99988 899999999999999999999999999999888899999998765432 478
Q ss_pred HHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 691 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 691 l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
|+++++++|++|++|..++++++||+|++||++|+.|+
T Consensus 371 l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 371 LREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 89999999999999999999999999999999999654
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-55 Score=490.33 Aligned_cols=416 Identities=22% Similarity=0.302 Sum_probs=341.8
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 234 TY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEE
Q 004348 314 VKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393 (759)
Q Consensus 314 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii 393 (759)
... +.+.. ..+... . .... ...........+++++|+
T Consensus 81 ~~~--~~~~~-----~~~~~~----------------~-------------------~~~~-~~~~~~~~~~~~~~~~i~ 117 (436)
T TIGR01923 81 LEE--KDFQA-----DSLDRI----------------E-------------------AAGR-YETSLSASFNMDQIATLM 117 (436)
T ss_pred ccc--cceee-----cchHhh----------------h-------------------hccc-ccccccccCCcCceEEEE
Confidence 321 00000 000000 0 0000 000111234578899999
Q ss_pred eccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHH
Q 004348 394 YTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473 (759)
Q Consensus 394 yTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l 473 (759)
|||||||.||+|+++|+++. .........++++++|+++...++.|..++ ..++.++..|+++++.+. ...+
T Consensus 118 ~TSGtTG~PK~v~~s~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~------~~~~ 189 (436)
T TIGR01923 118 FTSGTTGKPKAVPHTFRNHY-ASAVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDK------FNQL 189 (436)
T ss_pred eCCCCCCCCcEEEEehHHHH-HHHHHHHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecch------HHHH
Confidence 99999999999999999954 445556667899999999999999998885 568899999999999753 2489
Q ss_pred HHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeecccccccee
Q 004348 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM 553 (759)
Q Consensus 474 ~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~ 553 (759)
++.|+++++|++.++|+++..|++.... .+++|.+++|||++++++.+++.. ++ +++++.||+||++...
T Consensus 190 ~~~l~~~~~t~~~~~P~~l~~l~~~~~~------~~~l~~~~~~G~~~~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~ 259 (436)
T TIGR01923 190 LEMIANERVTHISLVPTQLNRLLDEGGH------NENLRKILLGGSAIPAPLIEEAQQ-YG---LPIYLSYGMTETCSQV 259 (436)
T ss_pred HHHHHHhCCeEEEeHHHHHHHHHhCcCC------CCceEEEEECCCCCCHHHHHHHHH-hC---CceeeEecCCccchhc
Confidence 9999999999999999999999887432 268999999999999999998875 44 8899999999998755
Q ss_pred cccCCCCCCCCCCCcCCCCCCceEEE-ECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCe
Q 004348 554 ITPLPGAWPQKPGSATFPFFGVQPVI-VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632 (759)
Q Consensus 554 ~~~~~~~~~~~~~~iG~p~~g~~~~I-vD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl 632 (759)
+........ ...++|+|+++++++| .|+.+ +.|||+|+| +.+++||+++++.+...+ .+|||+|||+
T Consensus 260 ~~~~~~~~~-~~~~~G~~~~~~~~~i~~~~~~------~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~~~~~TGD~ 327 (436)
T TIGR01923 260 TTATPEMLH-ARPDVGRPLAGREIKIKVDNKE------GHGEIMVKG--ANLMKGYLYQGELTPAFE---QQGWFNTGDI 327 (436)
T ss_pred cCcCccccc-cccCCCccCCCcEEEEEeCCCC------CceEEEEEC--CccchhhCCChhhhhhhh---cCCCeeccce
Confidence 433222211 2234899999999999 44332 679999999 899999999877665432 3689999999
Q ss_pred ee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHH
Q 004348 633 CS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693 (759)
Q Consensus 633 ~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~ 693 (759)
++ +|++|++.|||++|.++|.|.+++|++.++...+..++++|+++++.. .+++.+
T Consensus 328 ~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~~l~~ 402 (436)
T TIGR01923 328 GELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDIS-----QAKLIA 402 (436)
T ss_pred EEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCCC-----HHHHHH
Confidence 88 899999999999999999999999999887766788999999876432 568889
Q ss_pred HHHhhcCCCccccEEEEeCCCCCCCCCcccHHHH
Q 004348 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727 (759)
Q Consensus 694 ~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L 727 (759)
+++++|+.|++|..|+++++||+|++||++|++|
T Consensus 403 ~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 403 YLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred HHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 9999999999999999999999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-55 Score=507.42 Aligned_cols=479 Identities=19% Similarity=0.137 Sum_probs=364.3
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.+.+...+. ..|+.+|+...+ ..+.+||.||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~----~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g 78 (545)
T PRK07768 4 FTEKMYANAR-TSPRGMVTGEPD----APVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRG 78 (545)
T ss_pred HHHHHHHHhh-CCCcceEEecCC----CceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 5666667777 789999997652 36789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHH-------HHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc
Q 004348 282 AVHSVVFAGFSSDSL-------AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (759)
Q Consensus 282 av~vpldp~~~~~~l-------~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (759)
++++|+++..+.+++ ..+++.++++++++++.... ....+.. ... .+
T Consensus 79 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~--~~~-~~---------- 132 (545)
T PRK07768 79 ASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLA-------------AAPVLEE--KGI-RV---------- 132 (545)
T ss_pred ccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhh-------------hhhhhcc--cCC-ce----------
Confidence 999999998887654 45677789999998765321 0011100 000 01
Q ss_pred ccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCC-cEEE
Q 004348 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPS-DVYW 433 (759)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~-d~~l 433 (759)
+.++++....+. ......++++++|+|||||||+||||+++|++++ .........+++.++ |+++
T Consensus 133 -----------~~~~~l~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~-~~~~~~~~~~~~~~~~d~~~ 198 (545)
T PRK07768 133 -----------LTVADLLAADPI--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLY-ANAEAMFVAAEFDVETDVMV 198 (545)
T ss_pred -----------eehhhhcccCCC--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHH-HHHHHHHHhcCCCCCCceeE
Confidence 112222221111 1224467899999999999999999999999954 445555566788876 8999
Q ss_pred EecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcc--cccCCCCCe
Q 004348 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY--VTRYSRKSL 511 (759)
Q Consensus 434 ~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~--~~~~~l~sL 511 (759)
+.+|+.|+.++...++.++..|+++++........++..++++++++++|++.++|.++..|.+..... ....++++|
T Consensus 199 ~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 278 (545)
T PRK07768 199 SWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSL 278 (545)
T ss_pred EeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchhe
Confidence 999999999877677788999999998864333347888999999999999988888887766532110 113578899
Q ss_pred eEEEEeCCCCCHHHHHHHHHH---hCCCCccEeeeeccccccceecccCCCC------------------------CCCC
Q 004348 512 RVLGSVGEPINPSAWRWFFNV---VGDSRCPISDTWWQTETGGFMITPLPGA------------------------WPQK 564 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~---~g~~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~ 564 (759)
|.++++|+++++++.+++.+. +|.+...+++.||+||++..++....+. ....
T Consensus 279 r~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (545)
T PRK07768 279 RFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRR 358 (545)
T ss_pred eeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcce
Confidence 999999999999999999874 5533346999999999986543321110 0123
Q ss_pred CCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee----------
Q 004348 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS---------- 634 (759)
Q Consensus 565 ~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~---------- 634 (759)
.+++|+|+++++++|+|+++++++.|+.|||+++| +.+++||++++... ..+. .+|||+|||+++
T Consensus 359 ~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~-~~~~--~~g~~~TGDl~~~~~~g~l~~~ 433 (545)
T PRK07768 359 LATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRG--ESVTPGYLTMDGFI-PAQD--ADGWLDTGDLGYLTEEGEVVVC 433 (545)
T ss_pred EEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEcc--CcccccccCCCCCc-cccc--CCCeeeccceEEEecCCEEEEE
Confidence 45799999999999999999999999999999999 88999999865432 2222 367999999988
Q ss_pred ---------ccEeeCHHHHHHHHhcCCccceEEEEeEe--cCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCC-
Q 004348 635 ---------SGHRIGTAEVESALVSHPQCAEAAVVGVE--HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF- 702 (759)
Q Consensus 635 ---------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~--~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~- 702 (759)
+|++|+|.|||++|.+||+|.+++|+++. +...++.+++++...... ++....++.+++++.++.+
T Consensus 434 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~~~~~l~~~~ 511 (545)
T PRK07768 434 GRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFE--DPAEVRRIRHQVAHEVVAEV 511 (545)
T ss_pred ccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccc--cHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999998887765 333455565555544332 2222345666676665543
Q ss_pred -ccccEEEEeC--CCCCCCCCcccHHHHHHHHh
Q 004348 703 -AAPDKIHWAP--GLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 703 -~vP~~iv~v~--~lP~T~~GKvdR~~L~~~~~ 732 (759)
.+|..+.+++ +||+|++||++|+.|++.+.
T Consensus 512 ~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 512 GVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred CCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 5788888887 89999999999999998764
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=470.50 Aligned_cols=516 Identities=23% Similarity=0.264 Sum_probs=393.2
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcC--CCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEAN--DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME 269 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~--~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e 269 (759)
.|+.+. -++++.|.+.+. ..|+.+++-+... ..+..+.+||.|..+++.+++..|+++|+++++.|+|+.-|++|
T Consensus 69 ~~~~~~--~T~~~~f~~~~~-~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pE 145 (691)
T KOG1256|consen 69 CPFDGP--LTLYEGFRRSVE-KSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPE 145 (691)
T ss_pred CCCCCc--ccHHHHhhcchh-ccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChh
Confidence 444433 379999999998 8999999987642 22557899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhh-cCCCccEEEEec
Q 004348 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK-SGISVDVCLTYE 348 (759)
Q Consensus 270 ~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~vi~~~ 348 (759)
|+++++||...|++.|||...++++.+.+|++++...++|++++.. ....++.... ..+.++.+|.++
T Consensus 146 Wiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k-----------~~~ll~~~~~~~~~~LK~iI~~~ 214 (691)
T KOG1256|consen 146 WIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKK-----------AEKLLEIKENDSLPSLKAIIQLD 214 (691)
T ss_pred hHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHH-----------HHHHHhhcccccCccceeEEEec
Confidence 9999999999999999999999999999999999999999986532 2222222211 126788888887
Q ss_pred cCccccccccccCCCCccchhhhcCCCCC-CCCc-cccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHH--HHHH-H
Q 004348 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPT-KCEV-EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKY-A 423 (759)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~--~~~~-~ 423 (759)
...........-..-...+|+++...... .... .+..|+|+|.|+|||||||.|||||+||+|++..... .... .
T Consensus 215 ~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~ 294 (691)
T KOG1256|consen 215 EPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAE 294 (691)
T ss_pred CCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcc
Confidence 65321000011111124568887665422 2222 4778999999999999999999999999995543221 1111 1
Q ss_pred h--CCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc
Q 004348 424 F--DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (759)
Q Consensus 424 ~--~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~ 501 (759)
. .....|++++++|++|++..+.+.+. +..|+.+.++.+ |+..+.+-|++.++|++.++|.+|..+-+....
T Consensus 295 ~~~~~~~~dv~lSyLPLAHi~er~~~~~~-~~~G~~IgF~~g-----D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~ 368 (691)
T KOG1256|consen 295 NAKATVGDDVYLSYLPLAHIFERVVELYT-FYIGAKIGFARG-----DILKLTDDLKELKPTVFPGVPRVLERIYEGIQK 368 (691)
T ss_pred cccccccCceEEEeCcHHHHHHHHHHHhH-hhcccEEEEecC-----ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHH
Confidence 1 12236999999999999988766554 589999999976 778888899999999999999999776221000
Q ss_pred ------------------------ccccCC-------------------CCCeeEEEEeCCCCCHHHHHHHHHHhCCCCc
Q 004348 502 ------------------------YVTRYS-------------------RKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (759)
Q Consensus 502 ------------------------~~~~~~-------------------l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~ 538 (759)
...... -..+|.+++|++|+++++.+.++..+| +
T Consensus 369 ~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g---~ 445 (691)
T KOG1256|consen 369 QVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG---C 445 (691)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC---c
Confidence 000000 146899999999999999999999987 9
Q ss_pred cEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHh
Q 004348 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (759)
Q Consensus 539 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~ 617 (759)
+|+++||+|||++..+...+++ ...+++|.|+|+++++++|. +.+--+.|..|||||+| +.++.|||+||++|.+
T Consensus 446 ~v~eGYGlTEts~g~~~~~~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG--~~Vf~GYyK~p~~T~e 521 (691)
T KOG1256|consen 446 RVLEGYGLTETSAGTTLTLPGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRG--PNVFMGYYKDPEKTAE 521 (691)
T ss_pred eeeecccccccCCceEeccCCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEec--chhceeccCChHHHhh
Confidence 9999999999996555444443 36789999999999999884 45555556689999999 9999999999999999
Q ss_pred hhcccCCcEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEE
Q 004348 618 TYFKPFPGYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677 (759)
Q Consensus 618 ~~~~~~~g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 677 (759)
.+-. +||++|||+|+ .|+.|.|..||++..+.+-|.+.+|.+.. ....|+|.|++
T Consensus 522 ~ide--DGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s---~~~~LvaiVvp 596 (691)
T KOG1256|consen 522 AIDE--DGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDS---LRSFLVAIVVP 596 (691)
T ss_pred hhcc--ccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCc---chhcEEEEEec
Confidence 9865 89999999999 89999999999999999999999998653 34579999999
Q ss_pred cCCCCCc-----------H------HH----HHHHHHHH-HhhcCCCccccEEEEeC------CCCCCCCCcccHHHHHH
Q 004348 678 VEGVPYS-----------E------EL----RKSLVLAV-RKQIGAFAAPDKIHWAP------GLPKTRSGKIMRRILRK 729 (759)
Q Consensus 678 ~~~~~~~-----------~------~l----~~~l~~~l-~~~Lp~~~vP~~iv~v~------~lP~T~~GKvdR~~L~~ 729 (759)
+.....+ + .+ ..++.+.- .+.|..+..-..|.+.+ .==+||+-|+.|..|.+
T Consensus 597 d~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~ 676 (691)
T KOG1256|consen 597 DPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLK 676 (691)
T ss_pred ChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHH
Confidence 6542210 1 11 22222222 22355566666666633 23469999999999999
Q ss_pred HHhcccCCCC
Q 004348 730 IASRQLDELG 739 (759)
Q Consensus 730 ~~~~~~~~~~ 739 (759)
.|.+++++++
T Consensus 677 ~yk~~Id~mY 686 (691)
T KOG1256|consen 677 YYKKQIDELY 686 (691)
T ss_pred HHHHHHHHHH
Confidence 9999888765
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=485.38 Aligned_cols=475 Identities=20% Similarity=0.226 Sum_probs=382.4
Q ss_pred CCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhccccccccccccccccc
Q 004348 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSEN 181 (759)
Q Consensus 102 ~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (759)
+.+++||+.+.+.++ ++...++|.+++|++.++.++.++|..++..+..+|+..+++++. +...+. . . ++
T Consensus 148 ~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~l-l~~~e~--~-~--~~ 217 (642)
T COG1020 148 TPAAKLDLALAVVEG----GLRLSFDYARELFDAETIERELRHFLQLLAALADAPRTSLSALPL-LLPSER--E-V--WN 217 (642)
T ss_pred CcccccceEEEEEeC----ceEEEEEeecccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCC-CCHHHH--h-h--cc
Confidence 457899998886633 677899999999999999999999999999999999977777643 222222 1 0 11
Q ss_pred ccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004348 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (759)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 261 (759)
. .+..-....+++..|.+++. ..|+++|+++. ..++||+||+.+++++|+.|.+.|++++++|+
T Consensus 218 -~--------~~~~~~~~~~i~~~f~~~a~-~~p~~~a~~~~------~~~lty~el~~~a~~la~~l~~~g~~~~~~V~ 281 (642)
T COG1020 218 -A--------LAAPIPLRLTIHLLFEEQAA-TTPDAVALVRG------GQQLTYAELDARANRLARLLISLGVGPGETVA 281 (642)
T ss_pred -c--------cccCCCccchHHHHHHHHHH-hCCCceeEecC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEE
Confidence 0 11111112368999999999 89999999976 68999999999999999999999999999999
Q ss_pred EEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004348 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (759)
Q Consensus 262 i~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 341 (759)
++++++++++++++|++|+|++|+|+||.+|.+|+.++++++++++++++........ ..
T Consensus 282 i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~--------------------~~ 341 (642)
T COG1020 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV--------------------GL 341 (642)
T ss_pred EEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc--------------------cC
Confidence 9999999999999999999999999999999999999999999999999844321000 00
Q ss_pred cEEEEeccCccccccccccCCCCccchhhhcCCCCCCCC-ccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHH
Q 004348 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE-VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (759)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~ 420 (759)
.. +.++.. ....+...+ .....+++++|++|||||||+||||+++|++ +.+...+.
T Consensus 342 ~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~-~~~~~~~~ 398 (642)
T COG1020 342 PG-LALDDA---------------------LSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRA-LANLLNDA 398 (642)
T ss_pred Cc-cccccc---------------------cccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHH-HHHHHHHH
Confidence 00 111100 000000001 1234568999999999999999999999999 55577777
Q ss_pred HHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCC
Q 004348 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (759)
Q Consensus 421 ~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~ 500 (759)
...+.+...|+++...+++|+.+ ++++|.++++|+++++.+..... ++..+.+.++++++|++..+|+++..++....
T Consensus 399 ~~~~~~~~~d~~l~~~s~~fD~~-~~~~f~~l~~G~~l~~~~~~~~~-~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~ 476 (642)
T COG1020 399 GARFGLDADDRVLALASLSFDAS-VFEIFGALLEGARLVLAPALLQV-DPAALLELLEAQGITVLLLVPLLLRLLLLAAL 476 (642)
T ss_pred HHhcCCCcccEEeecCCcccchh-HHHHHHHHhCCCEEEecCccccC-CHHHHHHHHHHcCCEEEEecHHHHHHHHhchh
Confidence 77799999999999999999998 79999999999999999876554 99999999999999999999999999987632
Q ss_pred cccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEE
Q 004348 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580 (759)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~Iv 580 (759)
..........+|.+++|||.++.++...+...... ...+.|.||+||++................++|+|++|++++|+
T Consensus 477 ~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~-~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~il 555 (642)
T COG1020 477 APDLISPCERLRQLLSGGEALPLALVQRLLQLAAL-ARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYIL 555 (642)
T ss_pred hccccCCcccccEEEEcCCCCCHHHHHHHHHhccc-cceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEE
Confidence 21122233459999999999999999988887643 36899999999977654432211111115689999999999999
Q ss_pred CCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCH
Q 004348 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGT 641 (759)
Q Consensus 581 D~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~ 641 (759)
|+.++++|.|+.|||+|.| .++++||+++|+.+...|+.. .+|+|||++| +|+||++
T Consensus 556 d~~~~~~p~gv~gel~i~g--~~~a~gy~~~p~lt~~~f~~~--~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel 631 (642)
T COG1020 556 DQGLRPLPLGVPGELYIAG--LGLALGYLNRPDLTAERFIAL--RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIEL 631 (642)
T ss_pred CCCCCcCCCCCCeeeEECC--cchhhhhcCChhhhHHHhhhc--cCccCCCeeeECCCCeEEEeccccceeEeceEecCc
Confidence 9999999999999999999 999999999999999999864 5999999998 8999999
Q ss_pred HHHHHHHhcCC
Q 004348 642 AEVESALVSHP 652 (759)
Q Consensus 642 ~eIE~~L~~~p 652 (759)
+|||+++.++|
T Consensus 632 ~eie~~l~~~~ 642 (642)
T COG1020 632 GEIEAALAEQP 642 (642)
T ss_pred HHHHHHHhcCC
Confidence 99999999886
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=456.52 Aligned_cols=391 Identities=28% Similarity=0.433 Sum_probs=300.4
Q ss_pred HhhcccccCCCeEEEEE-EcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeE
Q 004348 206 LDRNIEAGLGDKVAIYW-EANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284 (759)
Q Consensus 206 l~~~~~~~~pd~~Al~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~ 284 (759)
|+++++ ++||++|+++ . .+.+||+||+++++++|..|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 1 f~~~a~-~~pd~~a~~~~~------~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~ 73 (417)
T PF00501_consen 1 FERQAQ-RYPDRIALIDDE------GRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIP 73 (417)
T ss_dssp HHHHHH-HSTTSEEEEETT------TEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EE
T ss_pred ChhHHh-hCCCceEEEECC------CEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccc
Confidence 577888 8999999998 3 8999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCC
Q 004348 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364 (759)
Q Consensus 285 vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 364 (759)
+|++|.++.+++.++++.+++++||+ .+... -.. +........ .......++.++..... ...
T Consensus 74 v~l~~~~~~~~~~~~l~~~~~~~ii~-~~~~d------~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~ 136 (417)
T PF00501_consen 74 VPLDPSLSEDELRHILRQSGPKVIIT-SEAVD------SEP-LKKLKSIFK-QEDPSSSIIILDRDDLP--------KKE 136 (417)
T ss_dssp EEEETTSSHHHHHHHHHHHTESEEEE-CHHHS------CHH-HHHHHHHHT-TSTTTEEEEEESHSSCT--------TCH
T ss_pred cccccccccccccccccccceeEEEE-ecccc------ccc-cccchhhhc-ccccccccccccccccc--------ccc
Confidence 99999999999999999999999998 20000 011 111111110 00123334444432210 000
Q ss_pred ccchhhhcCCCCCCCCccc-cCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHH-HHHHhCCCCCcEEEEecCcchhc
Q 004348 365 DIWWQDVVPKYPTKCEVEW-VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCGWIT 442 (759)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~-~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~-~~~~~~l~~~d~~l~~~~l~~~~ 442 (759)
.+ .......... .. ..++++++|+|||||||.||+|+++|++++...... +...++++ |++++.+|++|..
T Consensus 137 ~~-~~~~~~~~~~----~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~ 209 (417)
T PF00501_consen 137 AL-KSASLSDEPQ----SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIF 209 (417)
T ss_dssp HH-HHHHHCHCSH----STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHH
T ss_pred cc-cccccccccc----cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccc
Confidence 00 0000000000 00 057899999999999999999999999865443331 12223344 6999999999999
Q ss_pred hhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcc--cccCCCCCeeEEEEeCCC
Q 004348 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY--VTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 443 g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~--~~~~~l~sLr~v~~gGe~ 520 (759)
+++..++.+|..|+++++.+.... .+++.+++.|+++++|++.++|+++..|++..... ....++++||.+++||++
T Consensus 210 g~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~ 288 (417)
T PF00501_consen 210 GLISALLAALFSGATLVLPSPFDL-FDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEP 288 (417)
T ss_dssp HHHHHHHHHHHCTSEEEEESSHHH-HHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST
T ss_pred cccccccccccccccccccccccc-cccccchhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 976899999999999999976432 23577899999999999999999999998742111 123478899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCC-CcccCCCceEEEEEec
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKS 599 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~-g~~vp~g~~GEL~I~g 599 (759)
+++++++++.+.++. .++++.||+||++..++.........+.+++|+|++|++++|+|++ +++++.|+.|||+|+|
T Consensus 289 l~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~ 366 (417)
T PF00501_consen 289 LPPDLLRRLRKAFGN--APIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRG 366 (417)
T ss_dssp -CHHHHHHHHHHHTT--SEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEES
T ss_pred CChhhcccccccccc--ccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccC
Confidence 999999999999983 5899999999999887643211112356789999999999999997 9999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS 634 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~ 634 (759)
|.++.||+++|+.+.+.|.. +|||+|||+|+
T Consensus 367 --~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~g~ 397 (417)
T PF00501_consen 367 --PNVFSGYYNDPELTAEAFID--DGWYRTGDLGR 397 (417)
T ss_dssp --TTSBSEETTBHHHHHHHEET--TSEEEEEEEEE
T ss_pred --Cccceeeecccccccccccc--ccceecceEEE
Confidence 89999999999999998764 57999999998
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=420.17 Aligned_cols=481 Identities=20% Similarity=0.243 Sum_probs=365.4
Q ss_pred CcceeeeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCe
Q 004348 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDA-VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPK 306 (759)
Q Consensus 228 ~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~-Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~ 306 (759)
++-..+||.|+.+++.++|+.|.++|++++++ |+|+++.+.+|+++++||++.+...|.+...+..+.|.+-|+.++++
T Consensus 85 g~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~ 164 (678)
T KOG1180|consen 85 GDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETEST 164 (678)
T ss_pred cceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccce
Confidence 34678999999999999999999999997776 99999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc-ccccc-c--CCCCccchhhhcCCCCCC-CCc
Q 004348 307 VVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT-RENTK-W--QDGRDIWWQDVVPKYPTK-CEV 381 (759)
Q Consensus 307 ~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~-~~~ 381 (759)
.|||+.+.. +.+...+..+ ..++++|.++..+... .+... . .+-..+++++.+.-.... .++
T Consensus 165 ~i~T~~~LL---------~kl~~~l~~~----~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~ 231 (678)
T KOG1180|consen 165 AIFTDSELL---------PKLKAPLKQA----KTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPP 231 (678)
T ss_pred EEEeCHHHH---------HHHHHHHhcc----CceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCC
Confidence 999987642 3444444444 6888888887432100 00111 0 112334566665443322 334
Q ss_pred cccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 382 ~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
.+..|+|+|+|||||||||.||||+++|.|+++...........+.+.|+++.++|+.|+.-+.+++ .++..|+++-..
T Consensus 232 ~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~-~~ft~G~~iGY~ 310 (678)
T KOG1180|consen 232 HPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAEL-VCFTWGGRIGYS 310 (678)
T ss_pred CCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHH-HHHhhCCEeecC
Confidence 4458899999999999999999999999996665555555556889999999999999999888775 468889887664
Q ss_pred cCCCCCCChh-----HHHHHHHHcCCcEEEehHHHHHHHHhcCCccc----------------------c----------
Q 004348 462 EGAPTYPDSG-----RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV----------------------T---------- 504 (759)
Q Consensus 462 ~~~~~~~d~~-----~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~----------------------~---------- 504 (759)
+..... |.. ..---+...|+|+|..+|.++..+.+.-.... .
T Consensus 311 S~~TLt-dts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld 389 (678)
T KOG1180|consen 311 SPLTLT-DTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLD 389 (678)
T ss_pred Ccceec-ccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHH
Confidence 322111 111 01112346799999999999877632210000 0
Q ss_pred --------cCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCce
Q 004348 505 --------RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ 576 (759)
Q Consensus 505 --------~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~ 576 (759)
..--..||.+++||.||+++..+.+.-.+. +++..+||.||++...+...+.+ ...+.+|.|++-++
T Consensus 390 ~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C---~Pv~qGYGLTEtca~~tv~e~~d--~~~g~vG~pl~c~e 464 (678)
T KOG1180|consen 390 ALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC---CPVLQGYGLTETCAAATVLEPED--FSTGRVGAPLPCCE 464 (678)
T ss_pred HHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc---ccccccccccchhcccEecChhh--cccccccCCccceE
Confidence 000146999999999999999999988886 79999999999987665544433 45678999999999
Q ss_pred EEEEC-C------CCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCc--EEEeCCeee-------------
Q 004348 577 PVIVD-E------KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCS------------- 634 (759)
Q Consensus 577 ~~IvD-~------~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g--~y~TGDl~~------------- 634 (759)
++++| + .++| | .|||+|+| +++..|||+++|+|.+.|.. .+| ||+|||+|+
T Consensus 465 iKLvdw~EgGY~~~~~P-P---rGEI~i~G--~~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIGe~~pdG~LkIIDRK 537 (678)
T KOG1180|consen 465 IKLVDWEEGGYFAKNKP-P---RGEILIGG--PNVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIGEFHPDGCLKIIDRK 537 (678)
T ss_pred EEEEEhhhcCccCCCCC-C---CceEEecC--CccChhhhCChhhhhhhcee-cCCcEEEeccccceecCCCcEEEeech
Confidence 99998 2 2344 2 59999999 99999999999999999987 566 999999998
Q ss_pred -------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCC----------CC--------cHHH--
Q 004348 635 -------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV----------PY--------SEEL-- 687 (759)
Q Consensus 635 -------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~----------~~--------~~~l-- 687 (759)
+|+-|+++-||++++..|-|...+|.+.. ....++++||++++. .. +..+
T Consensus 538 KdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~---~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~ 614 (678)
T KOG1180|consen 538 KDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADS---NKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVK 614 (678)
T ss_pred hhhhhhcccceeehHHHHHHHhcCcchhheEEeccc---ccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHH
Confidence 89999999999999999999999998654 345799999997541 11 1112
Q ss_pred --HHHHHHHH-HhhcCCCccccEEEEeCCCCCC-------CCCcccHHHHHHHHhcccCCCC
Q 004348 688 --RKSLVLAV-RKQIGAFAAPDKIHWAPGLPKT-------RSGKIMRRILRKIASRQLDELG 739 (759)
Q Consensus 688 --~~~l~~~l-~~~Lp~~~vP~~iv~v~~lP~T-------~~GKvdR~~L~~~~~~~~~~~~ 739 (759)
.++|.++- .++|..+.+|..|++.++ |-| ..-|+.|+.++..+..++++++
T Consensus 615 ~v~k~L~~~ak~~~L~~iEip~~I~l~~e-~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y 675 (678)
T KOG1180|consen 615 AVLKELIEAAKSQKLERIEIPAKIVLSPE-PWTPENGLVTAALKLKRKEILAAYKKEIDRLY 675 (678)
T ss_pred HHHHHHHHHHHhcccccccccceeEecCC-CcCCCccccHHHHHhhHHHHHHHHHHHHHHHh
Confidence 23333333 455999999999998865 444 4459999999999988877654
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=413.82 Aligned_cols=486 Identities=22% Similarity=0.286 Sum_probs=374.9
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|.++++ ++|+++|+++. ++.+++||+|++++++|+|+.|...|++.||.||++|+|.+|++...|+.+|+
T Consensus 78 ti~~~F~~~vr-r~p~k~aii~~----~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKl 152 (649)
T KOG1179|consen 78 TIAELFLSQVR-RQPDKPAIIYE----GPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKL 152 (649)
T ss_pred cHHHHHHHHHH-hCCCccEEEEe----CCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhh
Confidence 68899999999 99999999999 34689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++...|+++...+.|.+-|.-++++++|+..+.. ..+.++++.+.. ..-++...+...
T Consensus 153 Gv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~---------~~~~e~~~~l~~---~~i~~~~~~~~~--------- 211 (649)
T KOG1179|consen 153 GVITAFINTNLRGEPLLHSITVSGARALVVGPELL---------NALEEILPLLIK---NGIHVFSLGPTS--------- 211 (649)
T ss_pred CceeeeeccccccchhhhhhhhcCceEEEECHHHH---------HHHHhcchhhhh---ccceEEecCCCC---------
Confidence 99999999999999999999999999999987643 333333322211 111122221111
Q ss_pred CCCCccchhhhcCCCCCCC----CccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEec
Q 004348 361 QDGRDIWWQDVVPKYPTKC----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~ 436 (759)
......++...++..+... ........++++.||||||||.||..+++|.-++ .....+-..++++++|+++..+
T Consensus 212 ~~~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~-~~a~g~~~~~g~~~~DvvY~~l 290 (649)
T KOG1179|consen 212 VPDGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYL-QGAAGFYYVFGMTADDVVYTTL 290 (649)
T ss_pred CCchHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHH-HHHHHHHHHhCCCccceEEEcc
Confidence 0111223333333333222 1234556789999999999999999999999854 4444466779999999999999
Q ss_pred CcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEE
Q 004348 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (759)
Q Consensus 437 ~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (759)
|+.|.++.+..+.++|..|+|+|+-.. +++..+|+-..+|++|++.-.--+.+.|++.+.... ..-..+|..+
T Consensus 291 PLYHsaa~ilGi~~~l~~GaT~VlrkK----FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~--er~HkVRla~- 363 (649)
T KOG1179|consen 291 PLYHSAAGILGIGGCLLHGATVVLRKK----FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPE--ERQHKVRLAY- 363 (649)
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEecc----cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChh--hcCceEEEEe-
Confidence 999999999999999999999999643 699999999999999999999999999999876432 2346778776
Q ss_pred eCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCC------CCCCceEEEEC---------
Q 004348 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF------PFFGVQPVIVD--------- 581 (759)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~------p~~g~~~~IvD--------- 581 (759)
|..|-++.|+.|.++||. .+|.+.||+||.....+ +..+ +-|.+|+ -+.-+++-=+|
T Consensus 364 -GNGLR~diW~~Fv~RFg~--~~IgE~YgaTEgn~~~~-N~d~----~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd 435 (649)
T KOG1179|consen 364 -GNGLRPDIWQQFVKRFGI--IKIGEFYGATEGNSNLV-NYDG----RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRD 435 (649)
T ss_pred -cCCCCchHHHHHHHHcCC--CeEEEEeccccCcceee-eecC----ccccccchhhhhhhccceEEEEecCCCCceeec
Confidence 888999999999999995 67999999999876443 2221 1222222 22223332233
Q ss_pred CCC--cccCCCceEEEEEecCCCc---ccccccCChhhHHhh----hcccCCcEEEeCCeee------------------
Q 004348 582 EKG--VEIEGECSGYLCIKSSWPG---AFRTLYGDHERYETT----YFKPFPGYYFTGDGCS------------------ 634 (759)
Q Consensus 582 ~~g--~~vp~g~~GEL~I~g~~~~---v~~GY~~~~e~~~~~----~~~~~~g~y~TGDl~~------------------ 634 (759)
++| .+|++|++|.|+-+=.... -+.||.+..+.+.++ .|.++|-||.|||+-.
T Consensus 436 ~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFR 515 (649)
T KOG1179|consen 436 SQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFR 515 (649)
T ss_pred CCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCcee
Confidence 333 3578999997653211022 289999976555444 4666677999999854
Q ss_pred -ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCC-eEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeC
Q 004348 635 -SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG-QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 712 (759)
Q Consensus 635 -~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~-~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~ 712 (759)
.|++|+..|||++|....+++|+.|.|+.-+..+ ..=.|-|+.++..+.+ .+.+-+++++.||+|++|..+.+.+
T Consensus 516 WKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d---~~~l~~~l~~~LP~YA~P~FlRl~~ 592 (649)
T KOG1179|consen 516 WKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKD---LEKLYQHLRENLPSYARPRFLRLQD 592 (649)
T ss_pred ecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccch---HHHHHHHHHhhCccccchHHHHHHh
Confidence 8999999999999999999999999999766432 2223555566655443 7889999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHH
Q 004348 713 GLPKTRSGKIMRRILRKIA 731 (759)
Q Consensus 713 ~lP~T~~GKvdR~~L~~~~ 731 (759)
++++|.+=|..+..|.+.-
T Consensus 593 ~i~~TgTFKl~K~~L~~eg 611 (649)
T KOG1179|consen 593 EIEKTGTFKLQKTELQKEG 611 (649)
T ss_pred hhhcccchhhHHHHHHHcc
Confidence 9999999999999998763
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=420.73 Aligned_cols=378 Identities=24% Similarity=0.279 Sum_probs=309.5
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeC
Q 004348 234 TYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 312 (759)
Q Consensus 234 TY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~ 312 (759)
||.||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCC-CCCCCccccCCCCcEE
Q 004348 313 AVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLF 391 (759)
Q Consensus 313 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~ 391 (759)
........ ....++...... ....... ..........++++++
T Consensus 81 ~~~~~~~~-------------------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 124 (408)
T TIGR01733 81 ALASRLAG-------------------LVLPIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAY 124 (408)
T ss_pred chhhhccc-------------------cCCceEEechhh-----------------hhhcccccccccccCCCCCCCcEE
Confidence 64321100 000111111100 0000000 0000111145789999
Q ss_pred EEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChh
Q 004348 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 471 (759)
Q Consensus 392 IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~ 471 (759)
|+|||||||.||+|+++|++++ .........+++.++|++++..|++|..++ +.++.++..|+++++.+..... .+.
T Consensus 125 i~~TSGTtG~pK~v~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~-~~~ 201 (408)
T TIGR01733 125 VIYTSGSTGRPKGVVVTHRSLV-NLLAWLARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEER-DAA 201 (408)
T ss_pred EEEcCCCCCCCCEEEeccHHHH-HHHHHHHHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhcc-CHH
Confidence 9999999999999999999954 445555567889999999999999999884 6789999999999998765332 578
Q ss_pred HHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccc
Q 004348 472 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551 (759)
Q Consensus 472 ~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~ 551 (759)
.+.++++++++|.+.++|++++.|++... ..+++||.+++||++++++++++|.+.++ ++.+++.||+||++.
T Consensus 202 ~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-----~~~~~l~~v~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~g~ 274 (408)
T TIGR01733 202 LLAALIAEHPVTVLNLTPSLLALLAAALP-----PALASLRLVILGGEALTPALVDRWRARGP--GARLINLYGPTETTV 274 (408)
T ss_pred HHHHHHHHcCceEEEeCHHHHHHHHHhhh-----hcccCceEEEEeCccCCHHHHHHHHHhCC--CcEEEecccCCceEE
Confidence 99999999999999999999999988753 36789999999999999999999999987 488999999999987
Q ss_pred eeccc-CCCCCCC--CCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc----cCC
Q 004348 552 FMITP-LPGAWPQ--KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFP 624 (759)
Q Consensus 552 ~~~~~-~~~~~~~--~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~----~~~ 624 (759)
.+... ....... ++.++|+|++++.++|+|+++++++.|+.|||+|+| +.++.||+++++.+.+.|.. ..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~ 352 (408)
T TIGR01733 275 WSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGG--PGVARGYLNRPELTAERFVPDPFAGGD 352 (408)
T ss_pred EEEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecC--ccccccccCChhhhhcceeeCCCCCCC
Confidence 66422 1111111 267899999999999999999999999999999999 89999999999988877643 223
Q ss_pred c--EEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 625 G--YYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 625 g--~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| ||+|||+++ +|++|+|.|||++|..||.|.+|+|
T Consensus 353 ~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 353 GARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred CceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 4 999999988 8999999999999999999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=384.36 Aligned_cols=306 Identities=22% Similarity=0.255 Sum_probs=254.3
Q ss_pred cCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecC
Q 004348 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (759)
Q Consensus 384 ~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~ 463 (759)
..++|+++|+|||||||.||||+++|+++..+ ....... +...++++...|++|..++ ..++.+++.|+++++++.
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~-~~~~~~~--~~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTAS-ADATHDR--LGGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHH-HHHHHhc--cCCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCc
Confidence 34689999999999999999999999995443 3333332 3345788999999999985 567889999999988543
Q ss_pred CCCCCChhHHHHHHHHcC--CcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEe
Q 004348 464 APTYPDSGRSWDIVDKYK--VTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (759)
Q Consensus 464 ~~~~~d~~~l~~~i~~~~--vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~ 541 (759)
... +++..+++.+++++ +++...+|+++..++.... ...+++++|.+++||+++++++++++.+ ++ ++++
T Consensus 108 ~~~-~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~---~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~---~~v~ 179 (358)
T PRK07824 108 SAG-FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA---ATAALAELDAVLVGGGPAPAPVLDAAAA-AG---INVV 179 (358)
T ss_pred CCC-cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc---ccCCcccceEEEECCCCCCHHHHHHHHh-cC---CcEE
Confidence 333 48999999999998 5667778988877766532 2246789999999999999999998876 34 8899
Q ss_pred eeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc
Q 004348 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621 (759)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~ 621 (759)
+.||+||++..+. ..|+|++|++++|.| |||+++| +.++.||+++++.. .|.
T Consensus 180 ~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~-----------Gei~v~g--~~~~~gY~~~~~~~--~~~- 231 (358)
T PRK07824 180 RTYGMSETSGGCV------------YDGVPLDGVRVRVED-----------GRIALGG--PTLAKGYRNPVDPD--PFA- 231 (358)
T ss_pred ecccCCccCCCcC------------cCceeCCCCEEEecC-----------CEEEEec--CccccccCCCcccc--ccc-
Confidence 9999999875321 258899999999843 8999999 89999999988643 222
Q ss_pred cCCcEEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCC
Q 004348 622 PFPGYYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY 683 (759)
Q Consensus 622 ~~~g~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~ 683 (759)
.+|||+|||+++ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|+.+.+...
T Consensus 232 -~~g~~~TGDl~~~~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~ 310 (358)
T PRK07824 232 -EPGWFRTDDLGALDDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAP 310 (358)
T ss_pred -CCCceecccEEEEeCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCc
Confidence 367999999887 8999999999999999999999999999988888999999987765433
Q ss_pred cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 684 SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 684 ~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
. .++|+++++++|+.|++|..|+++++||+|++||+||++|++.+.+
T Consensus 311 ~---~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 311 T---LEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred C---HHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 3 6789999999999999999999999999999999999999998753
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=417.38 Aligned_cols=486 Identities=15% Similarity=0.063 Sum_probs=344.6
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~i 271 (759)
+|..-...+++.++|++.++ ++|+++|+.+.... ++.+.+||+|+.++++++|.+|+++|+++||+|+|+++|++||+
T Consensus 419 ~~~~~~~~~Tl~dll~~~a~-~~pd~~al~~~~~~-g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewv 496 (1452)
T PTZ00297 419 EYNPLAGVRSLGEMWERSVT-RHSTFRCLGQTSES-GESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIV 496 (1452)
T ss_pred cCCCcccCCCHHHHHHHHHH-HCCCCeEEEEeccC-CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 45444556689999999998 89999999743111 22478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCc
Q 004348 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (759)
Q Consensus 272 va~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~ 351 (759)
++.+||+++|++.||+++ +.+++.++++++++++||++.... ..+.+ .. ...++++|+++...
T Consensus 497 ia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l---------~kl~~---i~---~~~Lr~IIv~d~~~ 559 (1452)
T PTZ00297 497 ILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSV---------AAILT---CR---SRKLETVVYTHSFY 559 (1452)
T ss_pred HHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHH---------HHHHh---hc---ccCCcEEEEECCCc
Confidence 999999999999999975 467899999999999999975431 11111 11 13678888875321
Q ss_pred cccccccccC-CCCccchhhhcCCCCC--CCCccccCCCCcEEEEe---ccCCCCCCcEEEEccchHHHHHHHHHHHH--
Q 004348 352 AMTRENTKWQ-DGRDIWWQDVVPKYPT--KCEVEWVDAEDPLFLLY---TSGSTGKPKGVLHTTGGYMVHTATTFKYA-- 423 (759)
Q Consensus 352 ~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~Iiy---TSGSTG~PKgV~~th~~~l~~~~~~~~~~-- 423 (759)
.......... ......|++++..... .......+++|++.|+| ||||||.||||++||+|++.+........
T Consensus 560 ~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~ 639 (1452)
T PTZ00297 560 DEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVL 639 (1452)
T ss_pred ccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccc
Confidence 0000000000 1123457777654321 11122347889999996 99999999999999999665544332211
Q ss_pred hCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccc
Q 004348 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503 (759)
Q Consensus 424 ~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~ 503 (759)
....++|++++++|++|+++.+ ..+.++..|+++.. ++++.+++.|+++++|++.++|.++..+........
T Consensus 640 ~~~~~~D~~Ls~LPLaHI~er~-~~~~~l~~G~~I~~-------~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~ 711 (1452)
T PTZ00297 640 PSSFKKHLMVHFTPFAMLFNRV-FVLGLFAHGSAVAT-------VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRAN 711 (1452)
T ss_pred cCCCCCCEEEEechHHHHHHHH-HHHHHHHcCCEEEe-------CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHh
Confidence 2456789999999999998854 45677899999863 378899999999999999999999986643210000
Q ss_pred c------------------------cCC---------------C-CCeeEEEEeC--CCCCHHHHHHHHHHhCCCCccEe
Q 004348 504 T------------------------RYS---------------R-KSLRVLGSVG--EPINPSAWRWFFNVVGDSRCPIS 541 (759)
Q Consensus 504 ~------------------------~~~---------------l-~sLr~v~~gG--e~l~~~~~~~~~~~~g~~~~~l~ 541 (759)
. +.. + ..+|.+++|| ++++..+.. .+++.
T Consensus 712 ~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~---------~i~i~ 782 (1452)
T PTZ00297 712 ERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE---------HISVC 782 (1452)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC---------CceEE
Confidence 0 000 0 4688898887 355544322 26788
Q ss_pred eeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC--CCcccCCCceEEEEEecCCCcccccccCChhhHHhhh
Q 004348 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE--KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 619 (759)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~--~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~ 619 (759)
..||.||+. +.+.++. .. ..|.|+||++++|.|. .+.. + ..|||++++ ++||+.|.+.+
T Consensus 783 ~g~glTE~~---~~~~~~~--~~--~~G~PlpgvEvKI~~~~E~~~~--~-~~GEIlvr~---------~kdpe~T~e~~ 843 (1452)
T PTZ00297 783 YVPCLREVF---FLPSEGV--FC--VDGTPAPSLQVDLEPFDEPSDG--A-GIGQLVLAK---------KGEPRRTLPIA 843 (1452)
T ss_pred EecceEEee---eecCCCC--cc--cCCeecCceEEEEcccccccCC--C-CCCeEEEEE---------CCChHHHHHhh
Confidence 899999953 2222222 12 2399999999999864 2221 1 259999965 48999998742
Q ss_pred cccCCcEEEeCCeee-----------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCC------
Q 004348 620 FKPFPGYYFTGDGCS-----------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP------ 682 (759)
Q Consensus 620 ~~~~~g~y~TGDl~~-----------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~------ 682 (759)
+||+..|.+-. +|+.|.|..||+.+.++|.|.+++|++.... .++|.|+++...-
T Consensus 844 ----~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~ 915 (1452)
T PTZ00297 844 ----AQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQ 915 (1452)
T ss_pred ----CcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHH
Confidence 57887777653 9999999999999999999999999976432 3899998863110
Q ss_pred --------------CcHHHHH----HHHHH---HH--hhcCCCccccEEEEeC-CC-----CCCCCCcccHHHHHHHHhc
Q 004348 683 --------------YSEELRK----SLVLA---VR--KQIGAFAAPDKIHWAP-GL-----PKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 683 --------------~~~~l~~----~l~~~---l~--~~Lp~~~vP~~iv~v~-~l-----P~T~~GKvdR~~L~~~~~~ 733 (759)
..+++.+ .+++. +. ..+..+.+++.|++++ +| -+||+.|+.|+.+.+.|..
T Consensus 916 ~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~ 995 (1452)
T PTZ00297 916 SHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSS 995 (1452)
T ss_pred HcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHH
Confidence 0122211 23333 22 2267788998877764 45 4799999999999999998
Q ss_pred ccCCCCC
Q 004348 734 QLDELGD 740 (759)
Q Consensus 734 ~~~~~~~ 740 (759)
+++++++
T Consensus 996 ~Ie~LY~ 1002 (1452)
T PTZ00297 996 VIERFYS 1002 (1452)
T ss_pred HHHHHhc
Confidence 8877654
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=315.80 Aligned_cols=271 Identities=21% Similarity=0.272 Sum_probs=209.9
Q ss_pred CCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCC--CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCC
Q 004348 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP--SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 464 (759)
Q Consensus 387 ~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~--~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~ 464 (759)
++.++|+|||||||.||||+++|+++. +........+++.. .|++++.+|++|..++.+.++.++..|+++++.+.
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~- 172 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALL-SEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA- 172 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHH-HHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC-
Confidence 558999999999999999999999954 44444555566644 46899999999998877788889999999998753
Q ss_pred CCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeee
Q 004348 465 PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544 (759)
Q Consensus 465 ~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~Y 544 (759)
+++..+++.++.+ |++.++|++++.|.+.. .+++++|. ++||+++++++++++.+. +. .++++.|
T Consensus 173 ---~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~------~~l~slr~-i~gGa~l~~~l~~~~~~~-g~--~~v~~~Y 237 (386)
T TIGR02372 173 ---APASGIMRHARPG--DLIVGTPFIWEQLADLD------YRLPGVVG-VSSGAPSTAATWRCLLAA-GL--ARLLEVY 237 (386)
T ss_pred ---CChHHHHHhhccC--CEEEECcHHHHHHHhhC------cCCCccee-EecCCCCCHHHHHHHHHh-cc--cchhhee
Confidence 4778888887653 89999999999998753 24677886 678999999999999875 42 4689999
Q ss_pred ccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCC
Q 004348 545 WQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624 (759)
Q Consensus 545 G~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~ 624 (759)
|+||++++.+.. .+...|+|++++++.+ | ++.. .| +++
T Consensus 238 G~TEt~~i~~~~-------~~~~~~~~~p~~~~~~-~-~~~~-----------~g--~~~-------------------- 275 (386)
T TIGR02372 238 GATETGGIGLRE-------APDDPFRLLPDLACFA-D-TLSS-----------AG--LAR-------------------- 275 (386)
T ss_pred cccccccccccc-------CCCCCcccCCCccccC-C-CccC-----------CC--ccc--------------------
Confidence 999998654321 1234577888877654 2 2211 02 111
Q ss_pred cEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcH
Q 004348 625 GYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE 685 (759)
Q Consensus 625 g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~ 685 (759)
|++|||+++ +|++|+|.|||++|.+||+|.+|+|+. .++.+.|+|+++++... +
T Consensus 276 -~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~-~ 348 (386)
T TIGR02372 276 -RLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADE-A 348 (386)
T ss_pred -eeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCCh-H
Confidence 233444433 899999999999999999999999852 35689999998865432 3
Q ss_pred HHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCccc
Q 004348 686 ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723 (759)
Q Consensus 686 ~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvd 723 (759)
.+.++|+++++++||+|++|..|+++++||+|++||++
T Consensus 349 ~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 349 ELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 35678999999999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.80 Aligned_cols=309 Identities=17% Similarity=0.178 Sum_probs=226.9
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHHH--HHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEec
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~ 462 (759)
+.+++++++|||||||.||+|.++|.++..+.. ......++++++|+++...++++..+.....+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 456789999999999999999999998543322 122234688999999887776654443344567788999998775
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEee
Q 004348 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542 (759)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n 542 (759)
.. +++.+++.|+++++|++.++|+++..|++............+||.+++|||++++++.+++.+.+| +++++
T Consensus 153 ~~----~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g---~~v~~ 225 (422)
T TIGR02155 153 GG----QTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG---MKATD 225 (422)
T ss_pred CC----CHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC---CceEe
Confidence 42 678999999999999999999999998865321111112358999999999999999999999997 78999
Q ss_pred eeccccccce-ecccCCCCCCCCCCCcCCCCC--CceEEEEC-CCCcccCCCceEEEEEecCCCcccccccCChhhHHhh
Q 004348 543 TWWQTETGGF-MITPLPGAWPQKPGSATFPFF--GVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (759)
Q Consensus 543 ~YG~TE~~~~-~~~~~~~~~~~~~~~iG~p~~--g~~~~IvD-~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~ 618 (759)
.||+||+++. +...+.. ...|.++. ++.++|+| +++++++.|+.|||++++.. ...
T Consensus 226 ~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~--------------~~~ 285 (422)
T TIGR02155 226 IYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT--------------KEA 285 (422)
T ss_pred cccchhhcCCceeecccc------cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC--------------ccc
Confidence 9999998532 2211110 11233433 56778999 48999999999999999821 111
Q ss_pred hcccCCcEEEeCCeee-------------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEE
Q 004348 619 YFKPFPGYYFTGDGCS-------------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 673 (759)
Q Consensus 619 ~~~~~~g~y~TGDl~~-------------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 673 (759)
+ ..+||+|||+++ +|.+|+|.|||.+|.+||+|...+++.+......+.+++
T Consensus 286 ~---p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~ 362 (422)
T TIGR02155 286 L---PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTL 362 (422)
T ss_pred c---ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEE
Confidence 1 146999999875 799999999999999999998555555655544567888
Q ss_pred EEEEcCCCC------CcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHH
Q 004348 674 FVTLVEGVP------YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 725 (759)
Q Consensus 674 ~Vv~~~~~~------~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~ 725 (759)
+|+..++.. ..+.+.++|++++++.++.++. -.|+.+++||+|+ ||+.|.
T Consensus 363 ~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 363 KVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 887764431 1123467899999999887642 2233346999988 999763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=322.24 Aligned_cols=489 Identities=18% Similarity=0.198 Sum_probs=327.8
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcC--CCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAN--DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~--~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
+.+..+.+.+. ..|+..+..+-.. ..+.-..+||++.+..++.+|+.|...|..+|+.|+++|..+.++++..++++
T Consensus 37 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~ 115 (1032)
T KOG1178|consen 37 TLEDSFRRELA-EAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVL 115 (1032)
T ss_pred chhhHHHHHHh-hcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehh
Confidence 35556666666 6777766654321 22445789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCC----HHHHHHHH---HhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCc
Q 004348 279 RIGAVHSVVFAGFS----SDSLAQRI---MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (759)
Q Consensus 279 kaGav~vpldp~~~----~~~l~~il---~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~ 351 (759)
++|..++++||.+| ++++..+. ......++ ...++.+....... +... +..
T Consensus 116 ~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~-------------~~l~i~~~~~~~~~---~~~s-v~~----- 173 (1032)
T KOG1178|consen 116 AAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV-------------RRLNIIDILLNSLF---PKLS-VET----- 173 (1032)
T ss_pred hcceEEEEecCCCcccccchHHHhhhhhheeccceeh-------------hhhhhHHHHhhccc---cccc-hhh-----
Confidence 99999999999999 33222221 11111110 01111111111110 0000 000
Q ss_pred cccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcE
Q 004348 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431 (759)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~ 431 (759)
+ .-.+. .+............-++..+++.||||+||.||||.-+|.. +.+...|+...|.....++
T Consensus 174 -----------~-~~~f~-~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~s-l~~~fdw~~~~f~~t~s~~ 239 (1032)
T KOG1178|consen 174 -----------I-ADSFQ-MVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFS-LANAFDWMFTTFPPTGSDR 239 (1032)
T ss_pred -----------c-cchhh-hhhccCCCcceeeecccccceEeecccccccccccchhHHH-HHhhhhhccccCCcCccch
Confidence 0 00000 01111122222344567799999999999999999999999 6677888888888888887
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcc----cc---
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY----VT--- 504 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~----~~--- 504 (759)
+-....++++.. +.....+++..+..++++.......+..+.+.+++|+++.++.+|++.+.++...... .+
T Consensus 240 ~~~~~~~~~~d~-i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~ 318 (1032)
T KOG1178|consen 240 FTFKTSVYFDDT-IQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFS 318 (1032)
T ss_pred hhhhheeecccc-hHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhh
Confidence 644444545443 4455555555555445444333334789999999999999999999988877654431 00
Q ss_pred ----cCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCC--CC-----CCcCCCC-
Q 004348 505 ----RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ--KP-----GSATFPF- 572 (759)
Q Consensus 505 ----~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~--~~-----~~iG~p~- 572 (759)
....+.|+...++||+....++..+...+.. .-...-|+.|+..+............ .. .+...-+
T Consensus 319 ~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~--~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~ 396 (1032)
T KOG1178|consen 319 LSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAE--IFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSII 396 (1032)
T ss_pred cccccccchhheeeeecCCccchhhhhhhhhcccc--eeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhcc
Confidence 1123579999999999999999877666542 33444588888776554321111000 00 0000001
Q ss_pred -CCceEEEECCCCcccCCCceEEEEEecCC--CcccccccCChhhHHhhhcc---cCCcEEEeCCeee------------
Q 004348 573 -FGVQPVIVDEKGVEIEGECSGYLCIKSSW--PGAFRTLYGDHERYETTYFK---PFPGYYFTGDGCS------------ 634 (759)
Q Consensus 573 -~g~~~~IvD~~g~~vp~g~~GEL~I~g~~--~~v~~GY~~~~e~~~~~~~~---~~~g~y~TGDl~~------------ 634 (759)
..+.+++....+.+.++++.+.....+-+ ..+..| +..++.+..++.. ..+.+|+|||.|+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR 475 (1032)
T KOG1178|consen 397 GSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGR 475 (1032)
T ss_pred CCCcceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEe
Confidence 11334555555666655544443333210 223444 4556665555431 2244999999997
Q ss_pred -------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccE
Q 004348 635 -------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 707 (759)
Q Consensus 635 -------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~ 707 (759)
||+||+++||++++..||.|.++.+..+.+..-++.+++||+....... .+...|+.+++++|+.||+|..
T Consensus 476 ~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~--~~~~~i~~~l~~~La~y~vPs~ 553 (1032)
T KOG1178|consen 476 ADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKS--VLIRDIRNYLKKELASYMLPSL 553 (1032)
T ss_pred ccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCc--hhHHHHHHhhcccccceecceE
Confidence 9999999999999999999999999999998889999999999876553 3478899999999999999999
Q ss_pred EEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 708 IHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 708 iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
+|.++++|+|++||||+++|.+...
T Consensus 554 ~V~l~~vPl~~~GKvDkkaL~~~~s 578 (1032)
T KOG1178|consen 554 VVPLAKVPLNPNGKVDKKALLEYNS 578 (1032)
T ss_pred EEEhhhCCcCCCCCcChhhhhhhhh
Confidence 9999999999999999999998443
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=251.23 Aligned_cols=310 Identities=16% Similarity=0.116 Sum_probs=201.5
Q ss_pred cCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH--HHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 384 ~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~--~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
.+.++++.|.|||||||+||+|.+||.++......... ...+++++|+++...++++..+.....++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 34678899999999999999999999985433222211 2248999999999999888766444446677888886543
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEe
Q 004348 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (759)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~ 541 (759)
. .....+++|+++++|.+..+|+.+..|++............+||.+++|||++++++.+++.+.+| ++++
T Consensus 163 ~------~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g---~~v~ 233 (445)
T TIGR03335 163 G------KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG---CEVY 233 (445)
T ss_pred C------chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC---CcEE
Confidence 2 224568999999999999999988777654321111112468999999999999999999999887 8999
Q ss_pred eeeccccccceecccCCCCCCCCCCCcCCCC--CCceEEEECCC-CcccCCCceEEEEEecCCCcccccccCChhhHHhh
Q 004348 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPF--FGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (759)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~--~g~~~~IvD~~-g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~ 618 (759)
|.||+||++.... +.. ..|..+ +.+.++|+|++ ++++|.|+.|||+++.-+ . ...+....
T Consensus 234 ~~YG~TE~~~~~~--c~~-------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~----~----~~~r~~~P 296 (445)
T TIGR03335 234 NTYGSTEGTMCGE--CQA-------VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLL----K----PGERCGSL 296 (445)
T ss_pred ecCChhhhhheEE--ecC-------CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecC----C----CCccCCce
Confidence 9999999863221 110 123333 45779999986 567999999999999821 1 00000011
Q ss_pred hcccCCcEEEeCCeee----------------------------ccEeeCHHHHHHHHhcC---Cccce-EEEEeEecCC
Q 004348 619 YFKPFPGYYFTGDGCS----------------------------SGHRIGTAEVESALVSH---PQCAE-AAVVGVEHEV 666 (759)
Q Consensus 619 ~~~~~~g~y~TGDl~~----------------------------~G~rI~~~eIE~~L~~~---p~V~e-a~Vv~~~~~~ 666 (759)
++ -|+|||+++ +|.+|.|.+||++|.++ +++.. ..++...+..
T Consensus 297 li-----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (445)
T TIGR03335 297 LI-----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEE 371 (445)
T ss_pred EE-----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCC
Confidence 11 277777655 89999999999999995 55543 2233222222
Q ss_pred CCeEEEEEEEEcCCCCC-cHHHHHHHHHH----H---HhhcCCCccccEEEEeC--CCCCCC-CCcccH
Q 004348 667 KGQGIYAFVTLVEGVPY-SEELRKSLVLA----V---RKQIGAFAAPDKIHWAP--GLPKTR-SGKIMR 724 (759)
Q Consensus 667 ~~~~lva~Vv~~~~~~~-~~~l~~~l~~~----l---~~~Lp~~~vP~~iv~v~--~lP~T~-~GKvdR 724 (759)
....+..-|...+.... .+++.+++.+. + +..+-...+...+.+++ .||+++ .||..|
T Consensus 372 ~~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 372 GEITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CCceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 23345555655443321 12333344433 1 11111222333444444 689984 688765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=227.19 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=163.0
Q ss_pred hhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEE
Q 004348 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (759)
Q Consensus 207 ~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~v 285 (759)
+.+++ .+|+++|+++.++..+..+++||+||.++++++|+.|++ +|+++||+|+|+++|++++++++|||+++|++++
T Consensus 3 ~~~~~-~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 3 SPLLA-ADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhh-hCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 34455 799999998753221135679999999999999999998 7999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCc
Q 004348 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (759)
Q Consensus 286 pldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (759)
|++ +++++++|++++.... + . . + +.++.+............. ....
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~---------~----~-~----~--~~~~~~~~~~~~~~~~~~~-~~~~ 127 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAA---------A----A-G----S--GEVVALSLDPLGRRVAGEL-PPGV 127 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhh---------c----c-c----C--CceEEEeccccccCCCCCC-CCcc
Confidence 995 7899999998765321 0 0 0 1 2223221100000000000 1122
Q ss_pred cchhhhcCCCCCCCCcc-ccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchh
Q 004348 366 IWWQDVVPKYPTKCEVE-WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444 (759)
Q Consensus 366 ~~~~~~~~~~~~~~~~~-~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~ 444 (759)
..|.+.+.......... ...++|++.|+||||+ +|++++.+. ...+++++|+++ .+|++|..|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~-----~~~~l~~~D~~l-~~Pl~H~~gl 192 (227)
T TIGR03089 128 IDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA-----RAAGLPPGDRVL-VLAWTDLEDF 192 (227)
T ss_pred cchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH-----hhcCCCCCCeEE-ecCCCchHHH
Confidence 45555554322222222 4567999999999985 666645443 457899999999 9999999998
Q ss_pred hHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCc
Q 004348 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483 (759)
Q Consensus 445 ~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT 483 (759)
...++.+|..|+++++++ .+++++++++|+++|||
T Consensus 193 ~~~~~~~l~~G~t~v~~~----rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 193 LATLLAPLAAGGSLVLVT----HPDPARLDQIAETERVT 227 (227)
T ss_pred HHHHHHHhccCceEEEec----CCCHHHHHHHHHhhcCC
Confidence 788999999999999984 36999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=237.81 Aligned_cols=497 Identities=15% Similarity=0.132 Sum_probs=331.4
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
-++.++|+-+++ ++||.+|+...+.++.+..++||++|..+|.++|.+|... -+++||.|+++.++++|++++++||+
T Consensus 770 ~~ile~Lq~R~a-~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cl 848 (1363)
T KOG3628|consen 770 LTILEILQWRAA-KTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACL 848 (1363)
T ss_pred HHHHHHHHHHhh-cCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHH
Confidence 378899988888 8999999999887777789999999999999999999866 48999999999999999999999999
Q ss_pred HhCCeEEecCCCCC------HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcc
Q 004348 279 RIGAVHSVVFAGFS------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (759)
Q Consensus 279 kaGav~vpldp~~~------~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (759)
.+|.+++|+.|-.. ...+..|++.++++.|+++.......+.- ++.....+ .....+++.++..
T Consensus 849 y~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr-------~~s~~~~~--s~~p~i~~~~~~~- 918 (1363)
T KOG3628|consen 849 YLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSR-------EASAHVDQ--SAIPLILVLPKLP- 918 (1363)
T ss_pred hcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhh-------hHHHHhhh--hcchhhhcccccc-
Confidence 99999999988543 34688899999999999987642111100 11111100 0111112111110
Q ss_pred ccccccccCCCCccchhhh---cCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCC
Q 004348 353 MTRENTKWQDGRDIWWQDV---VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPS 429 (759)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~ 429 (759)
..|... ..+.....++.....+.+||+-|.--++|.--|+.++|.+ +.+.....+....+.+.
T Consensus 919 -------------~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHss-lla~Ck~iKe~~~l~~~ 984 (1363)
T KOG3628|consen 919 -------------ETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSS-LLAFCKIIKETCQLYKS 984 (1363)
T ss_pred -------------hhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHH-HHHHHHHHHHHHccccC
Confidence 001111 1111122223345678899999999999999999999999 67778888888888887
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCccc-----c
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV-----T 504 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~-----~ 504 (759)
.-++...+..-..|+....+...++|.+.++.+......+|..|++.|++|+|.-++.+=..+..+.+...... .
T Consensus 985 rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~ 1064 (1363)
T KOG3628|consen 985 RPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKR 1064 (1363)
T ss_pred CceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhh
Confidence 77777777666667666677788899998888765555689999999999999998888888887766533111 1
Q ss_pred cCCCCCeeEEEEeCCCCCHHHHHHHHHHh---CCCCccEeeeecc-------------ccccceecc--cCCCC--CC--
Q 004348 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVV---GDSRCPISDTWWQ-------------TETGGFMIT--PLPGA--WP-- 562 (759)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~~~~~~~~~~---g~~~~~l~n~YG~-------------TE~~~~~~~--~~~~~--~~-- 562 (759)
..+.++ ..++..-|.....+..-|.+.+ |-.-..+.-.|+. .|-+..-.- ..... ..
T Consensus 1065 gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve 1143 (1363)
T KOG3628|consen 1065 GNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVE 1143 (1363)
T ss_pred hccccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeee
Confidence 112222 2333334444444544444333 2111122223332 221111000 00000 00
Q ss_pred -CCCC-----CcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc--------cCCcEE
Q 004348 563 -QKPG-----SATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK--------PFPGYY 627 (759)
Q Consensus 563 -~~~~-----~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~--------~~~g~y 627 (759)
..+. ..|...+++++.|+++ ...++..|+.|||++.+ +.-+.+|++-.+......|. ...+|-
T Consensus 1144 ~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S--~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~ 1221 (1363)
T KOG3628|consen 1144 VGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNS--AHNASCSFTIGDELRSNHFNARLSSGDLLGKSYA 1221 (1363)
T ss_pred cCCCCccccccCCcccccceeEEeCCccccccccCCcceEEecc--ccccccccccCchhhhhhhhhhccccccccccce
Confidence 0111 2377888999999997 56789999999999999 77777777643223333221 123499
Q ss_pred EeCCeee-----------------------------ccEeeCHHHHHHHH-hcCCccceEEEEeEecCCCCeEEEEEEEE
Q 004348 628 FTGDGCS-----------------------------SGHRIGTAEVESAL-VSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677 (759)
Q Consensus 628 ~TGDl~~-----------------------------~G~rI~~~eIE~~L-~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 677 (759)
||||+|. +|.|..|.+||..+ +.||.|.+|+|+-. +..+|..+..
T Consensus 1222 RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~-----~glvVvviE~ 1296 (1363)
T KOG3628|consen 1222 RTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA-----TGLVVVVIEC 1296 (1363)
T ss_pred eeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee-----CCeEEEEEEe
Confidence 9999998 99999999999877 57999999999843 3456777766
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCC-CccccEEEEeC--CCCCCCCCcccHHHHHHHHhc
Q 004348 678 VEGVPYSEELRKSLVLAVRKQIGA-FAAPDKIHWAP--GLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 678 ~~~~~~~~~l~~~l~~~l~~~Lp~-~~vP~~iv~v~--~lP~T~~GKvdR~~L~~~~~~ 733 (759)
..... -.++.--|.. ..|.. +-+-..+++++ .+|+++.|...|..+++.+.+
T Consensus 1297 ~gq~~-~~~LvPlIv~---~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1297 HGQQE-LADLVPLIVN---VVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred cCchh-HhhhhHHHHH---HHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence 65221 1122222222 22332 44555677777 499999999999998877553
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=199.39 Aligned_cols=306 Identities=21% Similarity=0.207 Sum_probs=214.1
Q ss_pred CCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEe
Q 004348 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~ 461 (759)
.-++...|--||||||+|+-+..+...+... ...+. ...+...+|++.....++...|....-+++--.|++++-.
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~w-a~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERW-AELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHH-HHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 3455666888999999999999998874332 22222 2357788999887777665555433344555567665544
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEe
Q 004348 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (759)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~ 541 (759)
.+ -+.++.+++++++++|++.++|+.+..|++..........-.+||.+++|+|+++++..+.+.+.+| +..+
T Consensus 167 ~~----g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g---~~~~ 239 (438)
T COG1541 167 SG----GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG---CKAF 239 (438)
T ss_pred CC----ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC---Ccee
Confidence 33 2678899999999999999999999999887543221234468999999999999999999999998 8889
Q ss_pred eeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHhhhc
Q 004348 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620 (759)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~ 620 (759)
+.||.||..+.....+.. .. -.--+-+...++|+|+ .|++++.|..|||+++. +.+. ...++
T Consensus 240 diYGltE~~g~g~~eC~~----~~-glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~----L~~~--------~~PlI 302 (438)
T COG1541 240 DIYGLTEGFGPGAGECTE----RN-GLHIWEDHFIFEIVDPETGEQLPDGERGELVITT----LTKE--------GMPLI 302 (438)
T ss_pred eccccccccCCccccccc----cc-CCCcchhhceeeeecCCcCccCCCCCeeEEEEEe----cccc--------CcceE
Confidence 999999997653111111 11 1112335678899995 89999999999999987 2111 11112
Q ss_pred ccCCcEEEeCCeee----------------------------ccEeeCHHHHHHHHhcCCccc-eEEEEeEecCCCCeEE
Q 004348 621 KPFPGYYFTGDGCS----------------------------SGHRIGTAEVESALVSHPQCA-EAAVVGVEHEVKGQGI 671 (759)
Q Consensus 621 ~~~~g~y~TGDl~~----------------------------~G~rI~~~eIE~~L~~~p~V~-ea~Vv~~~~~~~~~~l 671 (759)
-|+|||+.+ +|..|.|..||.+|.+.+.+. +-.++... ....+.+
T Consensus 303 -----RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L 376 (438)
T COG1541 303 -----RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDEL 376 (438)
T ss_pred -----EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceE
Confidence 499999987 899999999999999999999 54444444 4456678
Q ss_pred EEEEEEcCCCCCcHH---HHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCccc
Q 004348 672 YAFVTLVEGVPYSEE---LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 723 (759)
Q Consensus 672 va~Vv~~~~~~~~~~---l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvd 723 (759)
.+-|+..++...... +.++|.+.++..++.- +--.++.+.++|+|.. |..
T Consensus 377 ~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~v~~v~~g~l~r~~~-K~k 429 (438)
T COG1541 377 TVRVELENEAEELEDERRLAKKLIKNIKSELGVR-VEVELVEPGELPRTEG-KAK 429 (438)
T ss_pred EEEEEecCcccchHHHHHHHHHHHHHHHhhcCCc-eEEEEEeccceecccC-cee
Confidence 888888764222221 2245656566655421 2223555668999875 644
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-19 Score=188.93 Aligned_cols=126 Identities=29% Similarity=0.389 Sum_probs=108.6
Q ss_pred CCcEEEeCCeee---------------cc---EeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCc
Q 004348 623 FPGYYFTGDGCS---------------SG---HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS 684 (759)
Q Consensus 623 ~~g~y~TGDl~~---------------~G---~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~ 684 (759)
.+|||+|||+|+ +| ++|+|. ||++|.+||+|.+|+|++++++..++.++|||++... .+
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~~--~~ 283 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEGTGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELP--AD 283 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCcCCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC--CC
Confidence 478999999998 46 799999 9999999999999999999999999999999998742 22
Q ss_pred HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCC-CCCCChhhHHHHHh
Q 004348 685 EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDT-STLADPGVVDQLIA 755 (759)
Q Consensus 685 ~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~-~~~~~p~~~~~~~~ 755 (759)
.++|+++|+++||. ++|+.|+++++||+|++|||+|++|++++....+.+.|+ +++++..+++.+.+
T Consensus 284 ---~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 351 (365)
T PRK09188 284 ---EKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQIDELDDLLREPEIRGLVEAIAA 351 (365)
T ss_pred ---HHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcccccccccccChhHHHHHHHHHH
Confidence 57899999999999 999999999999999999999999999988877777776 55555555555443
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=163.39 Aligned_cols=472 Identities=16% Similarity=0.161 Sum_probs=300.0
Q ss_pred cCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCC--hHHHHHHHHHHHhCCeEEecCC
Q 004348 213 GLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN-YLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFA 289 (759)
Q Consensus 213 ~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~-~L~~~Gv~~gd~Vai~~~~s--~e~iva~LA~~kaGav~vpldp 289 (759)
..+...|.++-+..+ ....+||..+..++.++|+ .|.+.|.+++|+|.++...+ .|+++..++|.-.|.+.+|+.+
T Consensus 106 hs~~~ta~i~id~kg-k~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e 184 (1363)
T KOG3628|consen 106 HSATSTAHICIDKKG-KATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSE 184 (1363)
T ss_pred CCCCCceEEEEcCCC-ceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchh
Confidence 678889999887763 4889999999999999999 78888999999999999655 8999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchh
Q 004348 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQ 369 (759)
Q Consensus 290 ~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 369 (759)
.++.+++..+++-...+++++.....+.............+++. |.
T Consensus 185 ~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~----------------------------------w~ 230 (1363)
T KOG3628|consen 185 LSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAW----------------------------------WK 230 (1363)
T ss_pred hhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHh----------------------------------hh
Confidence 99999999999999999999877643211111000001111111 11
Q ss_pred hhcCCC---CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHH--------------HHHH-----HHHhCCC
Q 004348 370 DVVPKY---PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--------------ATTF-----KYAFDYK 427 (759)
Q Consensus 370 ~~~~~~---~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~--------------~~~~-----~~~~~l~ 427 (759)
..-... .+....+..... ..||-||++++|.--|++.+|. ++.+. ..++ ...++..
T Consensus 231 t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~ 308 (1363)
T KOG3628|consen 231 TNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVP 308 (1363)
T ss_pred cccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccC
Confidence 000000 000111122233 8999999999999999999998 33221 1111 1223445
Q ss_pred CCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhc----CCc--
Q 004348 428 PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD----GNE-- 501 (759)
Q Consensus 428 ~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~----~~~-- 501 (759)
..+.++......--.|+++.++.+|++|.+.+-++..-. ..|..+..++.++|.+++.+--..|...... +..
T Consensus 309 ~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l-~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~ 387 (1363)
T KOG3628|consen 309 SEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVL-KPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATL 387 (1363)
T ss_pred cccceeeccCcccccchhhhhhhhhhcCceeecCchhhc-CCCcchhhhhccceeEEEeecccccCcccccccCCccccc
Confidence 556666666666667778889999999999999987533 4788999999999999887764444433221 110
Q ss_pred ---ccccCCCCCeeEEEEeCCCCCHHHHH----HHHHHhCCCCccE---------------eeeeccccccceecccCCC
Q 004348 502 ---YVTRYSRKSLRVLGSVGEPINPSAWR----WFFNVVGDSRCPI---------------SDTWWQTETGGFMITPLPG 559 (759)
Q Consensus 502 ---~~~~~~l~sLr~v~~gGe~l~~~~~~----~~~~~~g~~~~~l---------------~n~YG~TE~~~~~~~~~~~ 559 (759)
..+.-++++||.+++.-+.+..+..+ +|.+-+|....++ +..=++.|++....- .++
T Consensus 388 s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r-~p~ 466 (1363)
T KOG3628|consen 388 SFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIR-RPE 466 (1363)
T ss_pred chhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhccccc-Ccc
Confidence 01124689999999999999988553 3333334211111 111122444432221 111
Q ss_pred C-----------------------------CCCCCCCcCCCCCC-ceEEEECC-CCcccCCCceEEEEEecCCCcccccc
Q 004348 560 A-----------------------------WPQKPGSATFPFFG-VQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTL 608 (759)
Q Consensus 560 ~-----------------------------~~~~~~~iG~p~~g-~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY 608 (759)
. ........|.-.+| +.+.|+++ ..+.|..++.|||||.+ +++..+|
T Consensus 467 ~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS--~~~~~~~ 544 (1363)
T KOG3628|consen 467 QMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSS--NSLGKLF 544 (1363)
T ss_pred cccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEec--CCcccce
Confidence 0 00011124444444 45666665 56889999999999999 8999999
Q ss_pred cCChhhHHhhhcc-------cCC---cEEEeCCeee-------------------ccEeeCHHH----------HHHHHh
Q 004348 609 YGDHERYETTYFK-------PFP---GYYFTGDGCS-------------------SGHRIGTAE----------VESALV 649 (759)
Q Consensus 609 ~~~~e~~~~~~~~-------~~~---g~y~TGDl~~-------------------~G~rI~~~e----------IE~~L~ 649 (759)
|.-+..+...|-. ..+ .+.|||=+|+ +|.+....+ |+.+.+
T Consensus 545 ~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R 624 (1363)
T KOG3628|consen 545 YALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMR 624 (1363)
T ss_pred eeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHh
Confidence 9876555444410 111 2788888887 444444333 455566
Q ss_pred cCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHH--HHHHHHHHHh--hcCCCccccEEEEeCCCCCCCCCcccHH
Q 004348 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEEL--RKSLVLAVRK--QIGAFAAPDKIHWAPGLPKTRSGKIMRR 725 (759)
Q Consensus 650 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l--~~~l~~~l~~--~Lp~~~vP~~iv~v~~lP~T~~GKvdR~ 725 (759)
..+.|-++.++- +++++..++-.+.....+.+ ..++.+.+.. ++..|-+ .++..+.||||+-|-|.-.
T Consensus 625 ~v~~VF~~saf~------~E~~~Vv~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCi--livP~~tLPrt~~~Gi~~~ 696 (1363)
T KOG3628|consen 625 GVIAVFDVSAFE------DEHIVVVVLESPDATEENSFQWMSRVFQALDSIHQVGVYCI--LIVPANTLPRTPLGGIHNN 696 (1363)
T ss_pred ccceEEEEeeee------cceEEEEEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEE--EEeccccCCCccccccccH
Confidence 667788888773 44555555544443211111 1222222222 2333322 4666678999998889999
Q ss_pred HHHHHHhc
Q 004348 726 ILRKIASR 733 (759)
Q Consensus 726 ~L~~~~~~ 733 (759)
.+++.|..
T Consensus 697 ~~k~~F~~ 704 (1363)
T KOG3628|consen 697 ECKQAFLE 704 (1363)
T ss_pred HHHHHHHc
Confidence 99998864
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-12 Score=141.67 Aligned_cols=239 Identities=14% Similarity=0.073 Sum_probs=147.9
Q ss_pred cEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH--hCCCCCcEEEEecCcchhchhhHHHHHHhhcCcE-EEEecCCC
Q 004348 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGAS-VVVFEGAP 465 (759)
Q Consensus 389 ~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~t-lvl~~~~~ 465 (759)
-..+..||||||+|-.+.++............... .++..++++..+. |..+ .++.++.+... +..++-
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~---~ly~~~~~~~~~~~~~~l-- 172 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN---NLYQSVNNRWISLDFFDL-- 172 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh---hHHHHHHhccceeeecCC--
Confidence 45677899999999999999886433322222211 2455666655542 1111 12223323221 233321
Q ss_pred CCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeec
Q 004348 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (759)
Q Consensus 466 ~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG 545 (759)
. .+.+.+++.|++++++++.+.|+.+..|++...+. ..+ .+++.++++||.++++..+.+.+.|| +++++.||
T Consensus 173 ~-~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~--~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg---~~V~~~YG 245 (430)
T TIGR02304 173 L-APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEG--ELT-IKPKKVISVAEVLEPQDRELIRNVFK---NTVHQIYQ 245 (430)
T ss_pred C-cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhc--CCC-CCceEEEEccCCCCHHHHHHHHHHhC---CCeeEccC
Confidence 2 37889999999999999999999999998864321 112 47899999999999999999999998 89999999
Q ss_pred cccccceecccCCCCCCCCCCCcCCCCCCceEE--EECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccC
Q 004348 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPV--IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (759)
Q Consensus 546 ~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~--IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~ 623 (759)
+|| |.+.. .+.. +..-.--..+-++ ++|++++++ .+|++ +.|. ...++
T Consensus 246 ~tE-g~la~-eC~~------g~lHl~ed~~~vE~~ivD~~~~~~-------~ViT~--------L~n~----~~PlI--- 295 (430)
T TIGR02304 246 ATE-GFLAS-TCRC------GTLHLNEDLVHIEKQYLDEHKRFV-------PIITD--------FTRT----TQPIV--- 295 (430)
T ss_pred Cch-hheEE-ecCC------CCEEEccccEEEEeeEECCCCceE-------EEEec--------CCCc----cceEE---
Confidence 999 54332 1111 1110011123344 788876433 36665 1111 11111
Q ss_pred CcEEEeCCeee-------------------------------cc--EeeCHHHHHHHHh-cCCccceEEEEeEecCCCCe
Q 004348 624 PGYYFTGDGCS-------------------------------SG--HRIGTAEVESALV-SHPQCAEAAVVGVEHEVKGQ 669 (759)
Q Consensus 624 ~g~y~TGDl~~-------------------------------~G--~rI~~~eIE~~L~-~~p~V~ea~Vv~~~~~~~~~ 669 (759)
-|+|||+++ +| ..|.|..|+.++. ..+.|.+.-++-. ..+
T Consensus 296 --RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~----~~~ 369 (430)
T TIGR02304 296 --RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT----GSA 369 (430)
T ss_pred --eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc----cCC
Confidence 378888755 34 4458999998854 5789998877622 233
Q ss_pred EEEEEEEEc
Q 004348 670 GIYAFVTLV 678 (759)
Q Consensus 670 ~lva~Vv~~ 678 (759)
.+...++..
T Consensus 370 ~l~v~~~~~ 378 (430)
T TIGR02304 370 QLELIADCE 378 (430)
T ss_pred eEEEEEEeC
Confidence 455555553
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=113.00 Aligned_cols=70 Identities=40% Similarity=0.550 Sum_probs=62.6
Q ss_pred HHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccc--cEEEEeCC-CCCCCC
Q 004348 643 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAP--DKIHWAPG-LPKTRS 719 (759)
Q Consensus 643 eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP--~~iv~v~~-lP~T~~ 719 (759)
|||++|.+||+|.+|+|++++++..|+.++|||++ ..++|+++++++||+||+| ..++.+++ ||+|+|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~---------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~ 71 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL---------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPS 71 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE---------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETT
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe---------eecccccchhhhCCCcceeeEEEEccccCcCCCCCC
Confidence 89999999999999999999999889999999998 1489999999999999999 66666777 999999
Q ss_pred Cc
Q 004348 720 GK 721 (759)
Q Consensus 720 GK 721 (759)
||
T Consensus 72 GK 73 (73)
T PF13193_consen 72 GK 73 (73)
T ss_dssp SS
T ss_pred CC
Confidence 99
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-05 Score=82.67 Aligned_cols=202 Identities=14% Similarity=0.093 Sum_probs=109.3
Q ss_pred cCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhC-CCCC-cEEEEecCcchhchhh----HHHHHHhhc
Q 004348 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFD-YKPS-DVYWCTADCGWITGHS----YVTYGPMLN 454 (759)
Q Consensus 384 ~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~-l~~~-d~~l~~~~l~~~~g~~----~~~~~~L~~ 454 (759)
...+++..++-||||||.|--+.+.+.. +......+. ..+. .... -.++...|-......+ ......+..
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~ 164 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRET-AERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF 164 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHH-HHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence 3456677889999999998656565544 222222222 2122 2211 1233333322111111 122233445
Q ss_pred CcEEEEecCCCCCCChhHHHHHHH----HcCCcEEEehHHHHHHHHhcCCcccccCCCC-CeeEEEEeC------CCCCH
Q 004348 455 GASVVVFEGAPTYPDSGRSWDIVD----KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK-SLRVLGSVG------EPINP 523 (759)
Q Consensus 455 G~tlvl~~~~~~~~d~~~l~~~i~----~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~-sLr~v~~gG------e~l~~ 523 (759)
+.. ...++. ..|.+.+++.+. +.++..++..|.++-.++....+......|+ ..+.+-.|| |.++.
T Consensus 165 ~~~-~~l~~~--~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r 241 (365)
T PF04443_consen 165 GSR-FALDND--ELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSR 241 (365)
T ss_pred Cce-eeecCC--ccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCH
Confidence 555 344332 236676666664 3456678887876665554432222223443 345555555 34665
Q ss_pred -HHHHHHHHHhCC-CCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEec
Q 004348 524 -SAWRWFFNVVGD-SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKS 599 (759)
Q Consensus 524 -~~~~~~~~~~g~-~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g 599 (759)
+..+.+.+.+|- +.-++++.||+||.....+..-.+ . .+.|-. +.|.|+ +.+++|.|+.|-|.+-.
T Consensus 242 ~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~---~------~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vid 310 (365)
T PF04443_consen 242 EEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG---H------FHVPPW-VIIRDPETLEPLPPGETGLIQVID 310 (365)
T ss_pred HHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC---c------ccCCCe-EEEECCCCCcCCCCCCeeEEEEEc
Confidence 455666777884 345899999999977543321111 0 122222 667787 67999999999998877
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00087 Score=58.26 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=57.6
Q ss_pred cEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCC----cHHHHHHHHHHHHhhcCCCccccEEEEe
Q 004348 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY----SEELRKSLVLAVRKQIGAFAAPDKIHWA 711 (759)
Q Consensus 636 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~----~~~l~~~l~~~l~~~Lp~~~vP~~iv~v 711 (759)
|.+|+|..||++|.++|++.....+.+......+.+...|...++... .+++.++|.+.|++.|.- .| .+.++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~lv 77 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVELV 77 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEEE
Confidence 789999999999999999994444445444467788888998886542 256678888889998863 23 45555
Q ss_pred --CCCCCCCCCcccH
Q 004348 712 --PGLPKTRSGKIMR 724 (759)
Q Consensus 712 --~~lP~T~~GKvdR 724 (759)
.+||++ .||..|
T Consensus 78 ~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 78 PPGTLPRS-EGKAKR 91 (96)
T ss_dssp -TT-S----SSSS-S
T ss_pred CCCCccCC-CCcceE
Confidence 479998 678655
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=76.03 Aligned_cols=144 Identities=18% Similarity=0.082 Sum_probs=77.0
Q ss_pred CCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceE-EE--ECCC-
Q 004348 508 RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQP-VI--VDEK- 583 (759)
Q Consensus 508 l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~-~I--vD~~- 583 (759)
+|.|+.|.+-+..-...-.+++++.+|. -..+...|+.||+-. .+ +... . ...+...++..+ +- +|+.
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~-~~~~~~~y~ASEg~i-~i-~~~~---~--~~~~~l~~~~~ffEFip~~~~~ 337 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGG-VPIQSKGYGASEGFI-GI-PLDP---E--DPGYVLAPDSGFFEFIPVDEDE 337 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTT-S-EEE-EEEETTEEE-EE-ES-C---C--C--EEE-TTSSEEEEEE-STT-
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCC-CceeeccccccceEE-EE-ecCC---C--CCceEeecCCeEEEEEeccCCc
Confidence 6899977766665555667788888884 233457899999632 22 2210 1 112233333322 22 2321
Q ss_pred ------Cc-----ccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee------------------
Q 004348 584 ------GV-----EIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------ 634 (759)
Q Consensus 584 ------g~-----~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------ 634 (759)
.+ .|..|+.=||+|+.. .|.| -|+.||+++
T Consensus 338 ~~~~~~~~~l~~~ele~G~~YelviTt~-----~GLy----------------RY~iGDvVrv~gf~~~~P~i~F~~R~~ 396 (528)
T PF03321_consen 338 QNPSEQPKTLLLHELEVGEEYELVITTN-----SGLY----------------RYRIGDVVRVTGFYNQTPRIEFVGRRG 396 (528)
T ss_dssp ------SSSEEGGG--TT-EEEEEEEST-----TS-S----------------SEEECEEEEEEEEETTEEEEEEEEETT
T ss_pred ccccCCCceecHHHhcCCCeEEEEEecc-----ccee----------------eeecCCEEEEeeccCCCcEEEEeccCC
Confidence 22 356788889998872 1221 288888877
Q ss_pred -----ccEeeCHHHHHHHHhcC-----CccceEEEEeEecCCCCeEEEEEEEEcCC
Q 004348 635 -----SGHRIGTAEVESALVSH-----PQCAEAAVVGVEHEVKGQGIYAFVTLVEG 680 (759)
Q Consensus 635 -----~G~rI~~~eIE~~L~~~-----p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~ 680 (759)
.|+++.-.+|+++|.+. -.+.+..+...........-+.|+.+...
T Consensus 397 ~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 397 QVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp EEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred ceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 79999999999998775 34566666644222334556677777654
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.53 Score=54.67 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.8
Q ss_pred cCCCCcEEEEeccCCC-CCCcEEEEccch
Q 004348 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGG 411 (759)
Q Consensus 384 ~~~~d~a~IiyTSGST-G~PKgV~~th~~ 411 (759)
..++.+.+..-||||| |++|-|.+|...
T Consensus 97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~ 125 (597)
T PLN02249 97 LSSHPITEFLTSSGTSAGERKLMPTIEED 125 (597)
T ss_pred eCCCchhhhcccCCCCCCceeEEeccHHH
Confidence 3466778899999999 899999999854
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.79 Score=52.89 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=23.0
Q ss_pred CCCCcEEEEeccCCCC-CCcEEEEccch
Q 004348 385 DAEDPLFLLYTSGSTG-KPKGVLHTTGG 411 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG-~PKgV~~th~~ 411 (759)
.++.+.+..-|||||| ++|-|.+|+..
T Consensus 99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~ 126 (612)
T PLN02620 99 CSKPISEFLTSSGTSGGERKLMPTIEEE 126 (612)
T ss_pred CCCChhhhhhcCCCCCCceeeeecCHHH
Confidence 4566778999999997 69999999886
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.88 Score=52.61 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCCcEEEEeccCCCC-CCcEEEEccch
Q 004348 385 DAEDPLFLLYTSGSTG-KPKGVLHTTGG 411 (759)
Q Consensus 385 ~~~d~a~IiyTSGSTG-~PKgV~~th~~ 411 (759)
.++.+.+..-|||||| ++|-|.+|+..
T Consensus 87 t~~pi~~F~~SSGTT~g~~K~IP~t~e~ 114 (606)
T PLN02247 87 SAQPITELLTSSGTSGGQPKLMPSTAEE 114 (606)
T ss_pred CCCCcceeeccCCCCCCceeEeeccHHH
Confidence 3667789999999995 99999999875
|
|
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.002 Score=55.19 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=30.1
Q ss_pred cccCCCCCCCCCcchhhhhhhccccccCCCcccCCChhhhhccCCC
Q 004348 95 ESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVP 140 (759)
Q Consensus 95 ~~~~~~~~~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~ 140 (759)
....+++.+.+||||++.+.+.+ +++.+.++|+++||++++|++
T Consensus 47 ~~~~~~~~~~~~~DL~l~~~~~~--~~l~~~~~Y~~~lf~~~ti~~ 90 (91)
T PF13745_consen 47 LEPIPLENGGAKFDLTLEVREDG--DGLRLQLEYNTDLFSEETIER 90 (91)
T ss_dssp EEE-SS--SB-SSSEEEEEEE-S--S-EEEEEEEETTT--HHHHHH
T ss_pred EEEeeccccceeeeEEEEEEecC--CeEEEEEEEEhHhCCHHHHhc
Confidence 33445678899999999988554 889999999999999998875
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.53 Score=51.95 Aligned_cols=83 Identities=23% Similarity=0.198 Sum_probs=70.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCh--HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEE
Q 004348 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM--ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308 (759)
Q Consensus 231 ~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~i 308 (759)
--+|+.++...+..+|+.|...|+.+||+|.++..-++ .-+...+|+.++|+.++|+.+. .-++...++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 35899999999999999999999999999988876221 1167888999999999999883 55677889999999999
Q ss_pred EEeCCc
Q 004348 309 ITSNAV 314 (759)
Q Consensus 309 it~~~~ 314 (759)
.+...+
T Consensus 187 ~~tps~ 192 (438)
T COG1541 187 AATPSY 192 (438)
T ss_pred EEChHH
Confidence 998765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 759 | ||||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 0.0 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 0.0 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 0.0 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 0.0 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 0.0 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 0.0 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 0.0 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-152 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 1e-28 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 1e-19 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 1e-19 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-17 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 7e-17 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 5e-16 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-15 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-13 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 2e-12 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 2e-09 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 4e-09 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 5e-09 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-08 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 2e-08 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-08 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-08 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 5e-08 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 9e-08 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 4e-07 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 1e-06 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 2e-06 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 3e-06 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-06 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 2e-05 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-05 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-05 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 9e-05 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 9e-05 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-04 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-04 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-04 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 3e-04 |
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 1166 bits (3018), Expect = 0.0
Identities = 331/652 (50%), Positives = 435/652 (66%), Gaps = 30/652 (4%)
Query: 123 ENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENL 182
+ + + + L+ +P++Y YK+S+ DP FW + W + Q+V + +
Sbjct: 3 QTHKHAIPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKVKNTSF 60
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
GNV I+W++ G N+ NCLDR+++ GD+ AI WE +D ++Y +L + V
Sbjct: 61 A--PGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDV 117
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
C+ AN L D+G+KKGD V IY+PM+ E +AMLACARIGAVHSV+F GFS +++A I+D
Sbjct: 118 CRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIID 177
Query: 303 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362
++VIT++ R ++I LK VD AL + SV+ + + T + WQ+
Sbjct: 178 SSSRLVITADEGVRAGRSIPLKKNVDDALKNP--NVTSVEHVIVLKR----TGSDIDWQE 231
Query: 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
GRD+WW+D++ K + + E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY
Sbjct: 232 GRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291
Query: 423 AFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV 482
FDY P D+YWCTAD GW+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V
Sbjct: 292 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351
Query: 483 TIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542
I YTAPT +R+LM +G++ + R SLR+LGSVGEPINP AW W++ +G +CP+ D
Sbjct: 352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411
Query: 543 TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602
TWWQTETGGFMITPLPGA K GSAT PFFGVQP +VD +G EG G L I SWP
Sbjct: 412 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWP 471
Query: 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAE 643
G RTL+GDHER+E TYF F YF+GDG SGHR+GTAE
Sbjct: 472 GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE 531
Query: 644 VESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA 703
+ESALV+HP+ AEAAVVG+ H +KGQ IYA+VTL G S EL + VRK+IG A
Sbjct: 532 IESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 704 APDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755
PD +HW LPKTRSGKIMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLE 643
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 1128 bits (2921), Expect = 0.0
Identities = 296/667 (44%), Positives = 396/667 (59%), Gaps = 41/667 (6%)
Query: 121 SEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFY-WKEKWGQRVCS 179
+ S + Q Y ++K S+EDPA F+ A++F W + + +V
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPF-DKVFI 60
Query: 180 ENLDVRKGNVK-IEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQL 238
+ + + + WF G N CYNC+DR+ +K AI +E ++PG ++TY +L
Sbjct: 61 PDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKEL 119
Query: 239 LQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297
L++VCQ+A L +GV+KGD V +Y+PM+ E I +LA +RIGA+HSVVFAGFSS+SL
Sbjct: 120 LEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 179
Query: 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357
RI D KVVIT++ RG K I K IVD AL E V L Y +
Sbjct: 180 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP----GVRHVLVYRK---TNNPS 232
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+ RD+ W KY T VD+EDPLFLLYTSGSTG PKGV H+T GY++
Sbjct: 233 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGAL 292
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
T +Y FD DV++ D GWITGH+YV YGP+L G + +VFEG P YP+ R WDI+
Sbjct: 293 LTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDII 352
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
D++KVT FY APT +R L R G+ Y+ +S KSLR LGSVGEPI W W+ +G +
Sbjct: 353 DEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNE 412
Query: 538 CPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVD-EKGVEIEG-ECSGY 594
PI DT+WQTE+G ++TPL G P KPGSA+FPFFG+ V++D G E+ G
Sbjct: 413 IPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGV 472
Query: 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------S 635
L +K++WP RT++ +H+RY TY P+PGYYFTGDG + S
Sbjct: 473 LAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVS 532
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-------EELR 688
GHR+ TAE+E+A++ P AE AVVG ++ GQ + AFV L +S ++++
Sbjct: 533 GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIK 592
Query: 689 KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPG 748
K LV VRK IG FAAP I LPKTRSGKIMRRILRKI + + D+LGD STL++PG
Sbjct: 593 KHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPG 652
Query: 749 VVDQLIA 755
+V LI
Sbjct: 653 IVRHLID 659
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 683 bits (1765), Expect = 0.0
Identities = 147/617 (23%), Positives = 236/617 (38%), Gaps = 68/617 (11%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
+ ++D + S+F K + + N
Sbjct: 7 HHHHHHSSGHIDDDDKHMTSLLSQFVSKTDFE--------SYEDFQENFKILVPENFNFA 58
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
Y+ +D +K+A+ W +D G + T+ L + AN+ G+ KGD V++
Sbjct: 59 YDVVDVYARDS-PEKLAMIWC-DDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
L + ML ++GA+ + + RI K+++
Sbjct: 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD------- 169
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV---PKYPTKC 379
+ + VD A EC I + + +G + +++ P +
Sbjct: 170 VPEQVDEAHAEC--GDIPLKKAKVGGDV----------LEGWIDFRKELEESSPIFERPT 217
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
ED + ++SG+ G PK V H Y + T KY + + +++ AD G
Sbjct: 218 GEVSTKNEDICLVYFSSGTAGFPKMVEHDNT-YPLGHILTAKYWQNVEDDGLHYTVADSG 276
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
W YG + G +V V++ ++ + KY VT F PT+ R L++
Sbjct: 277 WGKCVWGKLYGQWIAGCAVFVYD--YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK-- 332
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
E ++ Y+ +L+ GEP+NP + F G + + + QTET I P
Sbjct: 333 -EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETV-VTIATFPW 387
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK--SSWPGAFRTLY-GDHERYE 616
KPGS P G + ++D G E G + I P Y D ER E
Sbjct: 388 M-EPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 617 TTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEA 657
T+ GYY TGD +SG+++G EVESAL+ HP E
Sbjct: 447 ETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLEC 503
Query: 658 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 717
A+ GV V+GQ I A + L + S+ L+ L V+ + P I + P LPKT
Sbjct: 504 AITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKT 563
Query: 718 RSGKIMRRILRKIASRQ 734
SGKI R +R Q
Sbjct: 564 ISGKIRRVEIRDKDQSQ 580
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 547 bits (1411), Expect = 0.0
Identities = 126/578 (21%), Positives = 211/578 (36%), Gaps = 78/578 (13%)
Query: 188 NVKIEWFKGGIT---NICYNCLDR----NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQ 240
++ ++W + N + LD A++W N G + + +L +
Sbjct: 23 SMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWV-NGKGKELMWNFRELSE 81
Query: 241 QVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299
Q AN L G+++GD V + LP + E + +L C R G + S + R
Sbjct: 82 NSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYR 141
Query: 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA--KSGISVDVCLTYENQSAMTREN 357
+ K K ++ + + VD EC + + V
Sbjct: 142 LQMSKAKAIVAGDE---------VIQEVDTVASECPSLRIKLLVS--------------- 177
Query: 358 TKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
+ D W ++ ++ + T +++ + +TSG++G PK H+ +
Sbjct: 178 ---EKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLK 234
Query: 416 TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
+ SD+ W +D GWI P GA V D
Sbjct: 235 AKMD-AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK--FDPLVILK 291
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
+ Y + AP + R L++ + ++ Y L+ +VGE + P + G
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQ---QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG- 347
Query: 536 SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595
I +++ QTETG + KPG I+D+KG + G +
Sbjct: 348 --LDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDI 403
Query: 596 CIKSSW---PGAFRTLYGDHERYETTYFKPFPGYYFTGDGC------------------- 633
I+ G F + ++ ++ GD
Sbjct: 404 GIRVKPIRPIGIFSGYVDNPDKTAANI---RGDFWLLGDRGIKDEDGYFQFMGRADDIIN 460
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP--YSEELRKSL 691
SSG+RIG +EVE+AL+ HP E AV+ V+G+ + AFV L E+L K L
Sbjct: 461 SSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKEL 520
Query: 692 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
V+ + P KI + LPKT +GKI R LR
Sbjct: 521 QQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-125
Identities = 130/550 (23%), Positives = 207/550 (37%), Gaps = 65/550 (11%)
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N N K A + + TY +L ++ + A+ L+ +GV +
Sbjct: 24 NFAAYLFRLN--ETRAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEER 75
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPK 319
+++ + + LP+A L G V V + + + VI S A
Sbjct: 76 ILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA------ 129
Query: 320 AIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
L V AL+ G + V + + + +++++
Sbjct: 130 ---LVQNVTQALESAEHDGCQLIV-----------SQPRESEPRLAPLFEELIDAAAPAA 175
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
+ +D F LY+SGSTGKPKG +HT K +DV + A
Sbjct: 176 KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
+ G P+ GA+ ++ PT D + + +++ T+FY PTL +++
Sbjct: 236 FAYGLGNGLTFPLSVGATAILMAERPT-AD--AIFARLVEHRPTVFYGVPTLYANMLVSP 292
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
N + + ++R+ S GE + F G C I D TE ++ G
Sbjct: 293 N--LPARADVAIRICTSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAG 347
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ G+ P G + + DE G + GE G L IK P A + + E+ T
Sbjct: 348 --AVEYGTTGRPVPGYEIELRDEAGHAVPDGE-VGDLYIKG--PSAAVMYWNNREKSRAT 402
Query: 619 YFKPFPGYYFTGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAV 659
+ + +GD GC SG + EVE LV H EAAV
Sbjct: 403 FLG---EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV 459
Query: 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719
VGV+H AFV L SE L + L V+ ++ P I + LPKT +
Sbjct: 460 VGVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTAT 518
Query: 720 GKIMRRILRK 729
GKI R LR+
Sbjct: 519 GKIQRFKLRE 528
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 4e-71
Identities = 105/540 (19%), Positives = 197/540 (36%), Gaps = 85/540 (15%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
A + D +TY+Q+ + A+ L +G+ KGD V + +P +E
Sbjct: 30 PRLQAYVEPSTD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A++GAV + ++ ++ + D KVVI ++DA +
Sbjct: 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAP---------SAPVIDAIRAQA 136
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
G D G D + + + VE +D LF++Y
Sbjct: 137 DPPGTVTDW------------------IGADSLAERLRSAAADEPAVE-CGGDDNLFIMY 177
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TG PKGV+HT + A+++ D + D + + V +
Sbjct: 178 TSGTTGHPKGVVHTHES-VHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI-FSAMR 235
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G +++ D+ + W ++ + +V I P ++ + + R
Sbjct: 236 GVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYF 289
Query: 515 GSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
+ G P+ + + + + TE+ G L +K GSA
Sbjct: 290 ITGGAPMPEALIKIYAAKN-------IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRA 342
Query: 572 FFGVQPVIVDEKGVEI---EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 628
+ + GV EGE + IKS + + E + G++
Sbjct: 343 TMFTDVAVRGDDGVIREHGEGE----VVIKS--DILLKEYWNRPEATRDAFDN---GWFR 393
Query: 629 TGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669
TGD G S G + AE+ES ++ P +E AV+G+ E G+
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGE 453
Query: 670 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
A V + +++ + ++ + P K+ +A +P+ +GKI++ +LR+
Sbjct: 454 IAAAIVVADQNEVSEQQIVEYC----GTRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 5e-70
Identities = 112/539 (20%), Positives = 193/539 (35%), Gaps = 85/539 (15%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A + LT+ L + +LA+ L GV GD V I E+ +
Sbjct: 20 PDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A A IGA+ V ++D +A + D P VV+ +DIV L
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTD---------YRDIVAGVLPSL 124
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
V + G ++D+ P A D +++
Sbjct: 125 G----GVKKAYAIGD-----------GSGPFAPFKDLASDTPF--SAPEFGAADGFVIIH 167
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
T+ G+P+G L + G ++ ++ A+ +DV +TG +
Sbjct: 168 TAAVGGRPRGALISQGN-LLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLG-LMLTLQQA 225
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G + V+ D ++ ++ +KVT+ ++ +++ + + SLR +
Sbjct: 226 GGASVIAAK----FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA--QLA--SLRAV 277
Query: 515 GSVGEPINPSAWR-WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ P + N T+ Q+ET G + T P + +P SA P F
Sbjct: 278 TGLDTPETIERFEATCPN------ATFWATFGQSETSG-LSTFAP--YRDRPKSAGRPLF 328
Query: 574 GVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP-GYYFTGD 631
+VD + + GE G + ++ P F+ + + T F G++ TGD
Sbjct: 329 WRTVAVVDAEDRPLPPGE-VGEIVLRG--PTVFKGYWNNAA--ATQ--HAFRNGWHHTGD 381
Query: 632 -------GC--------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 670
G + G + AEVE AL HP A+A V+GV +
Sbjct: 382 MGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEA 441
Query: 671 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
I A G + + +L V I + P + + LPK G I R ++
Sbjct: 442 IKAVCVCKPGESIAAD---ALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKT 497
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 1e-68
Identities = 90/541 (16%), Positives = 177/541 (32%), Gaps = 88/541 (16%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
G +AI + TY L + LA L + V +Y+ ++ I +
Sbjct: 15 GHHIAITDG------QESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILI 65
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
AC +++ + + + ++ +++ + ++ I D ++ A +
Sbjct: 66 HACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDI 125
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+G+ +NT V + P+ + +D +++
Sbjct: 126 TTNGL---------------LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMF 170
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA---DCGWITGHSY---VT 448
TSG+TG K V T +A K + + + H V
Sbjct: 171 TSGTTGPQKAVPQTFRN-HYASAIGCKESLGFDRDTNWLSVLPIY-------HISGLSVL 222
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
++ G +V + + ++ + ++ ++T P + LM+ G +
Sbjct: 223 LRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQG-----LHEP 273
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568
+L+ + G ++ + PI +++ TET +T P +P +
Sbjct: 274 YNLQKILLGGAKLSATMIETAL----QYNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP-GYY 627
P V I + GE L IK G + T F GY+
Sbjct: 330 GMPSANVDVKIKNPNKEGH-GE----LMIKG--ANVMN---GYLYPTDLT--GTFENGYF 377
Query: 628 FTGD-------GC------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 668
TGD G S G I ++E+ P ++A VG + G
Sbjct: 378 NTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWG 437
Query: 669 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
Q + + S+ L+ + K + + P LP T +GK+ R L
Sbjct: 438 QVPKLYFVSESDI--SKA---QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLY 492
Query: 729 K 729
+
Sbjct: 493 R 493
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 5e-67
Identities = 112/537 (20%), Positives = 202/537 (37%), Gaps = 80/537 (14%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
K+AI A ++Y++L+ + ++AN L G++ GD V +E + L
Sbjct: 17 HKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYL 71
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A R G V+ + ++ L I D +PK+V+ + +D + A +
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPS---------KRDGIAAIAAKVG 122
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ ++ D A+D +LYT
Sbjct: 123 ATVETLG-------------------PDGRGSLTDAAAGASEAFATIDRGADDLAAILYT 163
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SG+TG+ KG + + + + T + + P DV G + +
Sbjct: 164 SGTTGRSKGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFAR 222
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
S++ D + D++ + T+ PT L++ +T+ + +R+
Sbjct: 223 GSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFI 274
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
S P+ R + G + + + TET M T P + PG+ GV
Sbjct: 275 SGSAPLLADTHREWSAKTG---HAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGV 329
Query: 576 QPVIVD-EKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTY--FKPFPGYYFTGD 631
+ D E G E+ G+ G + +K P F+ G E T F+ G++ TGD
Sbjct: 330 SARVTDPETGKELPRGD-IGMIEVKG--PNVFK---GYWRMPEKTKSEFRD-DGFFITGD 382
Query: 632 -------GC------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIY 672
G + G + E+ES + + P E+AV+GV H G+G+
Sbjct: 383 LGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVT 442
Query: 673 AFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
A V +G E ++ + Q+ F P K+ + LP+ GK+ + +LR+
Sbjct: 443 AVVVRDKGATIDEA---QVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRE 496
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 2e-62
Identities = 107/556 (19%), Positives = 197/556 (35%), Gaps = 91/556 (16%)
Query: 215 GDKVAIYWEANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI 272
G+K AI ++ + ++ + +LA+ + GV+KG+ V + +P ++ +
Sbjct: 33 GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92
Query: 273 AMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD 332
+ A R+ A + + S L + D + ++ + L + L+
Sbjct: 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSM---------LYENFKPVLE 143
Query: 333 ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC-EVEWVDAEDPLF 391
+ + V G +V+ V+ ED
Sbjct: 144 KTGVERVFVV-------------------GGEVNSLSEVMDSGSEDFENVKVNPEEDVAL 184
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG---HSY-- 446
+ YT G+TG PKGV+ T + A A D HS
Sbjct: 185 IPYTGGTTGMPKGVMLTHFN-LAANALQLAVATGLSHMDTIVGCM-------PMFHSAEF 236
Query: 447 -VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+ + G VV + + + ++KYK T + P + L+
Sbjct: 237 GLVNLMVTVGNEYVVM---GMF-NQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT 292
Query: 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ----TETGGFMITPLPGAW 561
Y L+V + P+ P+ + + Q TE M+T P
Sbjct: 293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACP-MVTTNPPLR 351
Query: 562 PQKPGSATFPFFGVQPVIVD-EKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYET-- 617
K + P ++ ++ E G E+ GE SG + I+ P F+ + + E
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE-SGEIVIRG--PNIFKGYWKREK--ENQE 406
Query: 618 --TYFKPFPGYYFTGD-------GC------------SSGHRIGTAEVESALVSHPQCAE 656
Y + ++ TGD G G+ I E+E+ L+ H +
Sbjct: 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMD 466
Query: 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYS---EELRKSLVLAVRKQIGAFAAPDKIHWAPG 713
AV+G E G+ AF+ L E++ + VR++I + ++ +
Sbjct: 467 VAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIE----WVRERISGYKRVREVEFVEE 522
Query: 714 LPKTRSGKIMRRILRK 729
LP+T SGK++RR+LR+
Sbjct: 523 LPRTASGKLLRRLLRE 538
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 2e-60
Identities = 105/551 (19%), Positives = 182/551 (33%), Gaps = 101/551 (18%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L D+ A+ + + +LTY++L A + V ++
Sbjct: 28 LSPAPTGAPADRPALRFG------ERSLTYAELAAAAGATAG-----RIGGAGRVAVWAT 76
Query: 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
ME +A++A G + LA + D P +V+ + P L+
Sbjct: 77 PAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALER 136
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
+ A + D
Sbjct: 137 VDVDVRARGA-------------------------------------------VPEDGAD 153
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
DP ++YTSG+TG PKG + + T A+ + DV + G
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRA-LATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD-GNEYVT 504
GP+ G SV + + ++ T+ + PT+ + +
Sbjct: 213 LGILGPLRRGGSVRHLGR----FSTEGAARELND-GATMLFGVPTMYHRIAETLPADPEL 267
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
+ R+L S + G + + + TET G +
Sbjct: 268 AKALAGARLLVSGSAALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPR 322
Query: 565 PGSATFPFFGVQPVIVDEKGVEI---EGECSGYLCIKSSWPGAFRTLYGDHERYETT--Y 619
G+ P GV+ +V+E G I +GE G + ++ P F R + T
Sbjct: 323 AGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG--PNLFT---EYLNRPDATAAA 377
Query: 620 FKPFPGYYFTGD-------GC-------------SSGHRIGTAEVESALVSHPQCAEAAV 659
F G++ TGD G S G++IG E+E+AL+ HP+ EAAV
Sbjct: 378 FTED-GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAV 436
Query: 660 VGVEHEVKGQGIYAFVTLVE-GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 718
G G+ I A++ + P + +L V ++ P + + +P+
Sbjct: 437 TGEPDPDLGERIVAWIVPADPAAPPALG---TLADHVAARLAPHKRPRVVRYLDAVPRND 493
Query: 719 SGKIMRRILRK 729
GKIM+R L +
Sbjct: 494 MGKIMKRALNR 504
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 2e-59
Identities = 111/568 (19%), Positives = 210/568 (36%), Gaps = 71/568 (12%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D +A+ + L+Y +L Q LA L+ G+K G+ ++ L + EL I
Sbjct: 39 SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITF 92
Query: 275 LACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD 332
A ++G V A L +P ++I R D ++ +
Sbjct: 93 FALLKLGVA--PVLALFSHQRSELNAYASQIEPALLIAD----RQHALFSGDDFLNTFVT 146
Query: 333 ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFL 392
E + S+ V D + QD + A++ +
Sbjct: 147 EHS----SIRVVQLLN-------------DSGEHNLQDAINHPAEDFTATPSPADEVAYF 189
Query: 393 LYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-TYGP 451
+ G+TG PK + T Y ++ + Y C S + G
Sbjct: 190 QLSGGTTGTPKLIPRTHNDY-YYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGV 248
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
L G +VV+ P + + +++K++V + P V ++ E +R SL
Sbjct: 249 FLAGGTVVL----AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASL 304
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
++L G ++ + +G C + + E G T L + + + +P
Sbjct: 305 KLLQVGGARLSATLAARIPAEIG---CQLQQVFGMAE-GLVNYTRLDDSAEKIIHTQGYP 360
Query: 572 -FFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFT 629
+ + D +G + +GE G L + P FR Y + + F G+Y +
Sbjct: 361 MCPDDEVWVADAEGNPLPQGE-VGRLMTRG--PYTFRGYYKSPQHNASA-FDA-NGFYCS 415
Query: 630 GD-------G------------CSSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 670
GD G G +I E+E+ L+ HP AA+V +E E+ G+
Sbjct: 416 GDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEK 475
Query: 671 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730
A++ + E + + ++R+ L + I F PD++ LP T GK+ ++ LR+
Sbjct: 476 SCAYLVVKEPLR-AVQVRRFL---REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQW 531
Query: 731 ASRQLDELGDTSTLADPGVVDQLIALAD 758
+ + + + + + ++ L D
Sbjct: 532 LASRASAGRASIPASKAALREVILPLLD 559
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 208 bits (533), Expect = 3e-59
Identities = 112/544 (20%), Positives = 213/544 (39%), Gaps = 71/544 (13%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
K + + TY+ + ++A+ L IG+++GD ++++LP E +A
Sbjct: 36 SSKPCLI----NGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L + GA+ + + LA+ + K++IT + D
Sbjct: 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT------------QACYYEKVKDFA 139
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+S + V +C+ + + ++ + + +D + L Y
Sbjct: 140 RESDVKV-MCVDSAPDGCLH-------------FSELTQADENEAPQVDISPDDVVALPY 185
Query: 395 TSGSTGKPKGVLHTTGGY---MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+SG+TG PKGV+ T G + + DV C I + +
Sbjct: 186 SSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
+ GA +++ P + + G +++KYKV+I P ++ S+ + + + ++ SL
Sbjct: 246 LRVGAPILIM---PKF-EIGSLLGLIEKYKVSIAPVVPPVMMSIAK--SPDLDKHDLSSL 299
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---PQKPGSA 568
R++ S G P+ + + TE G + L A KPG+
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQ--ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC 357
Query: 569 TFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
+ IVD E G + G +CI+ + D E T K G+
Sbjct: 358 GTVVRNAEMKIVDPETGASLPRNQPGEICIRG--DQIMKGYLNDPEATSRTIDK--EGWL 413
Query: 628 FTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 668
TGD G ++ AE+E+ L++HP+ ++AAVVG++ E G
Sbjct: 414 HTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473
Query: 669 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ AFV E +E+ + + KQ+ + ++ + +PK SGKI+R+ L+
Sbjct: 474 EVPVAFVVKSEKSQATED---EIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLK 530
Query: 729 KIAS 732
+ +
Sbjct: 531 EKLA 534
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 3e-56
Identities = 95/562 (16%), Positives = 181/562 (32%), Gaps = 64/562 (11%)
Query: 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKG 257
+ + R A + +A D ++ +TY++ + +LA +K G+
Sbjct: 22 AGEQLHKAMKRY--ALVPGTIAFT----DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTN 75
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRG 317
+++ ++ + +L IG + ++ L + +P VV
Sbjct: 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV------- 128
Query: 318 PKAIHLKDIVDAALDECAKSGISVD-VCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 376
K + L+ K I + + + + + + P
Sbjct: 129 -----SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP 183
Query: 377 TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM--VHTATTFKYAFDYKPSDVYWC 434
+ + ++ +SGSTG PKGV A + P
Sbjct: 184 ----ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILS 239
Query: 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRS 494
G T G ++ G VV+ + + YK+ PTL
Sbjct: 240 VVPFHHGFGMF-TTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSF 294
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI 554
+ + + +Y +L + S G P++ I + TET
Sbjct: 295 FAK--STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETTS--A 348
Query: 555 TPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE 613
+ KPG+ + +VD + G + G LC++ P + E
Sbjct: 349 ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG--PMIMSGYVNNPE 406
Query: 614 RYETTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQC 654
K G+ +GD G+++ AE+ES L+ HP
Sbjct: 407 ATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 464
Query: 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWAPG 713
+A V G+ + G+ A V L G +E+ +V V Q+ + +
Sbjct: 465 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVVFVDE 521
Query: 714 LPKTRSGKIMRRILRKIASRQL 735
+PK +GK+ R +R+I +
Sbjct: 522 VPKGLTGKLDARKIREILIKAK 543
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 4e-56
Identities = 115/554 (20%), Positives = 195/554 (35%), Gaps = 71/554 (12%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L +++ +AI + L+Y +L + LA L + G+ KGD ++ LP
Sbjct: 36 LTVGVQS-HPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP 88
Query: 266 MLMELPIAMLACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+ E I A + G V V+ A L I +PK++I S +
Sbjct: 89 NVAEFYIVFFALLKAGVV--VLNALYSHRQYELNAFIKQIQPKLLIGSRQHE----VFSN 142
Query: 324 KDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 383
+D+ D I + + + G W + + +
Sbjct: 143 NQFIDSLHDVNLSPEIILML------------NHQATDFGLLDWIETPAETFV---DFSS 187
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A++ F + GSTG PK + T Y ++ + C
Sbjct: 188 TPADEVAFFQLSGGSTGTPKLIPRTHNDY-DYSVRASAEICGLNSNTRLLCALPAPHNFM 246
Query: 444 -HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
S G + G VV+ P+ + I+ +++V + P+ V + +
Sbjct: 247 LSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ- 301
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ +SL++L G S R V+ C + + E G T L +
Sbjct: 302 -YKDQIQSLKLLQVGGASFPESLARQVPEVLN---CKLQQVFGMAE-GLVNYTRLDDSDE 356
Query: 563 QKPGSATFPFFGVQPV-IVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
Q + P + IVDE+ E+ GE G L + P F Y E F
Sbjct: 357 QIFTTQGRPISSDDEIKIVDEQYREVPEGE-IGMLATRG--PYTFCGYYQSPEHNSQV-F 412
Query: 621 KPFPGYYFTGD-------G------------CSSGHRIGTAEVESALVSHPQCAEAAVVG 661
YY++GD G G +I + E+E ++ HP+ AA+V
Sbjct: 413 DE-DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA 471
Query: 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 721
+ E G+ AF+ + LR+ L + I + PD+I LP T GK
Sbjct: 472 IVDEQFGEKSCAFIVSRNPELKAVVLRRHL---MELGIAQYKLPDQIKLIESLPLTAVGK 528
Query: 722 IMRRILRKIASRQL 735
+ ++ LR I +
Sbjct: 529 VDKKQLRSILNTST 542
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 1e-55
Identities = 101/555 (18%), Positives = 171/555 (30%), Gaps = 110/555 (19%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ P LT+++L +V +A L G++ V + P ++ IA+
Sbjct: 16 PDHCALA----VPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAI 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R+GAV +++ S LA+ I + + + + + DA
Sbjct: 72 LALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----------VADAIFQSG 121
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ + D+ Y E + P F+ Y
Sbjct: 122 SG---------------------ARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFY 160
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
TSG+TG PK + + + +V + G V +
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
+ VV E + +V + +VT + PT + +L + SLR
Sbjct: 221 LDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ G + + + + + TE + K G+ P F
Sbjct: 277 VTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNS-LYMRQP----KTGTEMAPGF 328
Query: 574 GVQPVIVDEKGVEIE-------GE---------CSGYL--------CIKSSWPGAFRTLY 609
+ IV G E GE GYL ++ W +RT
Sbjct: 329 FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW---YRT-- 383
Query: 610 GD----HERYETTYFKPFPGYYF----------TGDGCSSGHRIGTAEVESALVSHPQCA 655
D G +G G I +E+E L + P
Sbjct: 384 SDVAVWTPE----------GTVRILGRVDDMIISG-----GENIHPSEIERVLGTAPGVT 428
Query: 656 EAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGL 714
E V+G+ + GQ + A V G S + L ++ F P + L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALDT---FCRSSELADFKRPKRYFILDQL 485
Query: 715 PKTRSGKIMRRILRK 729
PK K++RR L +
Sbjct: 486 PKNALNKVLRRQLVQ 500
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 6e-55
Identities = 103/541 (19%), Positives = 183/541 (33%), Gaps = 66/541 (12%)
Query: 226 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285
+ +Y++ L++ C L L++ G+ + + E I ++A IG +
Sbjct: 46 NAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITS-----NAVKRGPKAIHLKDIVDAALDECAKSGIS 340
++ L + KP +V +S + +K IV +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
+D + + K VE E ++ +SGSTG
Sbjct: 166 LDTFIKRNTPPGFQASSFKT--------------------VEVDRKEQVALIMNSSGSTG 205
Query: 401 KPKGVLHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458
PKGV T A Y P G T G ++ G V
Sbjct: 206 LPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF-TTLGYLICGFRV 264
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
V+ + D + YK T PTL L + +E + +Y +L + S G
Sbjct: 265 VML---TKF-DEETFLKTLQDYKCTSVILVPTLFAILNK--SELLNKYDLSNLVEIASGG 318
Query: 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P++ + + TET +I KPG++ +
Sbjct: 319 APLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAK 374
Query: 579 IVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC---- 633
++D + + G +C+K P + + E + + G+ TGD
Sbjct: 375 VIDLDTKKSLGPNRRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYYDE 430
Query: 634 ---------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV 678
G+++ AE+ES L+ HP +A V GV V G+ A V L
Sbjct: 431 EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490
Query: 679 EGVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDE 737
G +E+ ++ V Q+ + + +PK +GKI R +R+I + + +
Sbjct: 491 SGKNMTEK---EVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547
Query: 738 L 738
+
Sbjct: 548 M 548
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-54
Identities = 113/556 (20%), Positives = 200/556 (35%), Gaps = 79/556 (14%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L GD++AI + +Y +L + +LA + +G+++ D V++ LP
Sbjct: 31 LRDRAAK-YGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 266 MLMELPIAMLACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+ E + A R+GA+ VFA S + + I +A
Sbjct: 84 NIKEFFEVIFALFRLGAL--PVFALPSHRSSEITYFCEFAEAAAYIIPDAYS----GFDY 137
Query: 324 KDIVDAALDECA--KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+ + + K+ I + + +D+ + EV
Sbjct: 138 RSLARQVQSKLPTLKNIIVAG------------------EAEEFLPLEDLHTEPVKLPEV 179
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
+ D FL + GSTG K + T Y +++ S VY
Sbjct: 180 ---KSSDVAFLQLSGGSTGLSKLIPRTHDDY-IYSLKRSVEVCWLDHSTVYLAALPMAHN 235
Query: 442 TG-HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
S G + G VV+ P ++ ++++ KVTI P L M +
Sbjct: 236 YPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS 291
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
R SL+VL G + A R V G C + + E T L
Sbjct: 292 --SRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAEGLVNY-TRLDDP 345
Query: 561 WPQKPGSATFPFF-GVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ P + + D+ +++ GE +G+L + P R Y E +
Sbjct: 346 EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE-TGHLLTRG--PYTIRGYYKAEEHNAAS 402
Query: 619 YFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAV 659
F G+Y TGD G ++ EVE+ L++HP +AA+
Sbjct: 403 -FTE-DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460
Query: 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719
V + + G+ F+ + P + EL+ L + + A+ PD++ + P+T
Sbjct: 461 VSMPDQFLGERSCVFIIPRDEAPKAAELKAFL---RERGLAAYKIPDRVEFVESFPQTGV 517
Query: 720 GKIMRRILRKIASRQL 735
GK+ ++ LR+ S +L
Sbjct: 518 GKVSKKALREAISEKL 533
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 2e-52
Identities = 110/546 (20%), Positives = 202/546 (36%), Gaps = 63/546 (11%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
K + + TYS + Q+A +GV + D V++ LP E ++
Sbjct: 75 ATKPCLI----NGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA + GA + F+ +A++ K++IT VD
Sbjct: 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITE------------ARYVDKIKPLQ 178
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
G+ + VC+ + ++ + Q VE + +D + L Y
Sbjct: 179 NDDGVVI-VCIDDNESVPIPEGCLRFTE----LTQSTTEASEVIDSVE-ISPDDVVALPY 232
Query: 395 TSGSTGKPKGVLHTTGGY---MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+SG+TG PKGV+ T G + + DV C I + +
Sbjct: 233 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCG 292
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
+ GA++++ P + + +++ + KVT+ P +V ++ + + +Y S+
Sbjct: 293 LRVGAAILIM---PKF-EINLLLELIQRCKVTVAPMVPPIVLAIAK--SSETEKYDLSSI 346
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG-FMITPLPGA--WPQKPGSA 568
RV+ S P+ + + + TE G ++ +P K G+
Sbjct: 347 RVVKSGAAPLGKELEDAVNAKFPN--AKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGAC 404
Query: 569 TFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
+ IVD + G + G +CI+ + + T K G+
Sbjct: 405 GTVVRNAEMKIVDPDTGDSLSRNQPGEICIRG--HQIMKGYLNNPAATAETIDK--DGWL 460
Query: 628 FTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 668
TGD G ++ AE+E+ L+ HP + AVV ++ E G
Sbjct: 461 HTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG 520
Query: 669 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ AFV + SE+ + V KQ+ + +K+ + +PK SGKI+R+ LR
Sbjct: 521 EVPVAFVVKSKDSELSED---DVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 577
Query: 729 KIASRQ 734
+
Sbjct: 578 AKLANG 583
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-36
Identities = 119/576 (20%), Positives = 190/576 (32%), Gaps = 136/576 (23%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP----MLMEL 270
G K + G TY+++ Q+ +L L+ +GV GD V L
Sbjct: 32 GRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE-- 87
Query: 271 PIAMLACARIGAV-HSV---VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A A +GAV H+ + +A + + KV++ L +
Sbjct: 88 --AYFAVPGMGAVLHTANPRLSP----KEIAYILNHAEDKVLLFDPN---------LLPL 132
Query: 327 VDAALDECAKSGISVDVC-------LTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
V+A E V + L YE
Sbjct: 133 VEAIRGELKTVQHFVVMDEKAPEGYLAYEE----------ALGEEADPV----------- 171
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVY------ 432
+ YT+G+TG PKGV+++ ++H+ A + DV
Sbjct: 172 --RV-PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 228
Query: 433 -----WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYT 487
WC + G V GP L+ AS+ ++ D VT
Sbjct: 229 FHVNAWCLPYAATLVGAKQVLPGPRLDPASL---------------VELFDGEGVTFTAG 273
Query: 488 APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF----FNVVGDSRCPISDT 543
PT+ +L T + K+LR L G S F V
Sbjct: 274 VPTVWLALADYLES--TGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQ--------G 323
Query: 544 WWQTETGGFM-ITPLPGAWPQKPGSATF--------PFFGVQPVIVDEKGVEIE--GECS 592
+ TET + + P V+ + DE+G + G+
Sbjct: 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL 383
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGD-------GC------------ 633
G + +K W YG+ E + G++ TGD G
Sbjct: 384 GEVQLKGPW--ITGGYYGNEEATRSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIK 439
Query: 634 SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 693
S G I + ++E+AL+ HP+ EAAVV + H + A V P EEL + L
Sbjct: 440 SGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHL-- 497
Query: 694 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
++ + PD +A +P+T +GK ++R LR+
Sbjct: 498 -LKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-26
Identities = 69/340 (20%), Positives = 112/340 (32%), Gaps = 80/340 (23%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
+K + + + ++ T+TY QL Q +A L+ G K GD V++ + L A
Sbjct: 25 PNKKSCTFL--NKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82
Query: 275 LACARIGAVHSVVFAGFSSDSLA--QRIM-DCKPKVVITSNAVKRGPKAIHLKDIVDAAL 331
L C G + ++ L QRI+ + KP +V+ + D ++
Sbjct: 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK----FTADELNTNP 138
Query: 332 DECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF 391
I+++ + R WQ + D F
Sbjct: 139 KFLKIPAIALE----------------SIELNRSSSWQPTSI-----------KSNDIAF 171
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY--W--CTADCGWITGHSYV 447
L YTSGST PKGV+ + + + F +F + W D G I
Sbjct: 172 LQYTSGSTMHPKGVMVSHHNLLDNLNKIFT-SFHMNDETIIFSWLPPHHDMGLIGCIL-- 228
Query: 448 TYGPMLNGASVVV-----FEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGN- 500
P+ G ++ F P SW + KYK TI +P N
Sbjct: 229 --TPIYGGIQAIMMSPFSFLQNP------LSWLKHITKYKATISG-SP----------NF 269
Query: 501 --EYVTRYSRK---------SLRVLGSVGEPINPSAWRWF 529
+Y + R+ S + EP+ F
Sbjct: 270 AYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHF 309
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 94/585 (16%), Positives = 168/585 (28%), Gaps = 170/585 (29%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D TY QL + +A ++ + + V+++ ++ +
Sbjct: 19 DFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV 72
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A + +G + + + I KP ++I + I L
Sbjct: 73 A---------LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL--- 120
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
V L + + P + V
Sbjct: 121 ----------------VSL-------------------SEIESAKLAEMPYERTHS-VKG 144
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMV-H-------TATTFKYAFDYKPSDVYWCTADC 438
+D ++++TSG+TG+PKGV + H AFD
Sbjct: 145 DDNYYIIFTSGTTGQPKGV-------QISHDNLLSFTNWMIEDAAFDVPKQPQ------- 190
Query: 439 GWITGHSYV-------TYGPMLNGASVVVFEGAP--TYPDSGRSWDIVDKYKVTIFYTAP 489
+ Y + G ++ P D + + + + V I+ + P
Sbjct: 191 -MLAQPPYSFDLSVMYWAPTLALGGTLFA---LPKELVADFKQLFTTIAQLPVGIWTSTP 246
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR---------CPI 540
+ M + + +L GE + S R F ++ +
Sbjct: 247 SFADMAMLSDDFCQAKMP--ALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV 304
Query: 541 SDTWWQTETGGFMITPLPGAWPQKP--GSATFPFFGVQPVIVDEKG----VEIEGECSGY 594
+ + + IT + G P I+DE G +GE
Sbjct: 305 ALSAIE-------ITREMVDNYTRLPIGY---PKPDSPTYIIDEDGKELSSGEQGE---- 350
Query: 595 LCIKSSWPGAFRTLYGDHERYETTY--FKPFPGY--YFTGD------------------- 631
+ + + P + G E T F F G Y TGD
Sbjct: 351 IIV--TGPAVSK---GYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQ 405
Query: 632 ----GCSSGHRIGTAEVESALVSHPQCAEAAVVGVE-HEVKGQGIYAFVTLVEGVPYSEE 686
G +RI +V L P A A V E K Q + A++ + +GV +
Sbjct: 406 IKYAG----YRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFD 461
Query: 687 LRKSLVLAVRKQIGA----FAAPDKIHWAPGLPKTRSGKIMRRIL 727
L A++ + + P K + LP T +GKI + L
Sbjct: 462 RELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTL 506
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 83/578 (14%), Positives = 146/578 (25%), Gaps = 141/578 (24%)
Query: 216 DKVAIYWEANDPGVDA----TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
+ A+ G TY +L + Q+AN + + G A+ + L +
Sbjct: 35 EWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASLH-GRAIAVSLDRSLIAF 93
Query: 272 IAMLACARIGAVHSVVFA------GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
++ + G G +D + + D + +
Sbjct: 94 AIIVGIMKSGN------TYVPIEAGLPNDRKSFLLRDSRAAMAFV--------------- 132
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
+ + V D ++ + + + T +
Sbjct: 133 --CDNNFDGVELPPETKVL-----------------DTKNQSFIENLSTQDTSDILNNYP 173
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+LLYTSGSTG PKGV + + + + ++ S
Sbjct: 174 ENLDAYLLYTSGSTGTPKGVRVSRHN-LSSFSDAWGKLIGNVAPKSLELGGVGKFLCLAS 232
Query: 446 YV-------TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G V + VT P+L+
Sbjct: 233 RAFDVHIGEMFLAWRFGLCAVT---GERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV 289
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAW-RW-------FFNVVGDSRCPISDTWWQTETG 550
+ L LG GE + P W NV G + I + +
Sbjct: 290 PEDA------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD 343
Query: 551 GFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEK-------GVEIEGECSGYLCIKSSWP 602
G P ++ G+ GE L I
Sbjct: 344 S---DTRCIGH----------PLGDSVAHVLAPGSNEHVKKGM--AGE----LVI--EGS 382
Query: 603 GAFRTLYGDHERYETTYFKPFPGY--YFTGD-------GCSS------------GHRIGT 641
G R + F G Y TGD G R+
Sbjct: 383 LVAN---GYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLEL 439
Query: 642 AEVESALVSHPQCAEAAVVGVEHE--VKGQGIYAFVT-----LVEGVPYSEELRKSLVLA 694
EV + S V + + Q + +FV + + + E K + +
Sbjct: 440 GEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNS 499
Query: 695 VRKQIGA----FAAPDKIHWAPGLP-KTRSGKIMRRIL 727
+R+ + PD I +P + S K + L
Sbjct: 500 LRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKAL 537
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 61/347 (17%), Positives = 104/347 (29%), Gaps = 85/347 (24%)
Query: 215 GDKVAIYW---EANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
A + E + GV TLT+SQL ++ +A L G GD V+I P +E
Sbjct: 38 PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYV 96
Query: 272 IAMLACARIGAVHSVVFAGFSSDSLA--QRIM-DCKPKVVITSNAVKRGPKAIHLKDIVD 328
+A L + G + + + ++ D P ++T+++ + V
Sbjct: 97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA-----VDDVVQHVA 151
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388
E S I VD+ + +
Sbjct: 152 RRPGESPPSIIEVDLLDLDAPNG----------------YTFKED-----------EYPS 184
Query: 389 PLFLLYTSGSTGKPKGVLHT-----TGGYMVHTATTFKYAFDYKPSDVY--W--CTADCG 439
+L YTSGST P GV+ + + + P+ W D G
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTY----PDSGRSW-DIVDKYKVTIFYTAPTLVRS 494
+ G P+L G V+ +P P W ++ AP
Sbjct: 245 LVIGIC----APILGGYPAVLT--SPVSFLQRP---ARWMHLMASDFHAFSA-AP----- 289
Query: 495 LMRDGN---EYVTRYSRK---------SLRVLGSVGEPINPSAWRWF 529
N E R + ++ + S E + + + F
Sbjct: 290 -----NFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRF 331
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 3e-20
Identities = 48/340 (14%), Positives = 103/340 (30%), Gaps = 84/340 (24%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A W DA +TY QL + LA+++ +++Y M E+ I L
Sbjct: 16 DQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
V AG +D + + + K+++++ AV
Sbjct: 70 G---------CVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV------------ 108
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
+ + +S D N V
Sbjct: 109 ---TVTDLPVRIVSEDNLKDIFFTHKGNTPNP----------------------EHAVKG 143
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
++ +++YTSGSTG PKGV T +V F+ + V ++ +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNC-LVSFTKWAVEDFNLQTGQV--------FLNQAPF 194
Query: 447 V-------TYGPMLNGASVVVFEGAP--TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
Y ++ G ++ + +++ + ++ + P+ +
Sbjct: 195 SFDLSVMDIYPSLVTGGTLWA---IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ + + +++ GE + R +
Sbjct: 252 EASF--SESMLPNMKTFLFCGEVLPNEVARKLIERFPKAT 289
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 4e-06
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV-----PYSEELRKS 690
G+R+ E+E L + A +V ++ K + A V E + ++K
Sbjct: 406 GYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKE 465
Query: 691 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
L +++ + P K + +P T +GK+ R+ L
Sbjct: 466 L----NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 3e-20
Identities = 65/335 (19%), Positives = 117/335 (34%), Gaps = 78/335 (23%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D A+ + TL+Y +L ++ ++A L+ G KG V +Y +EL I +L
Sbjct: 479 DAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532
Query: 276 ACARIGAVHSVVFA------GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDA 329
+ GA A D ++ + D ++T +K
Sbjct: 533 GVLKAGA------AYLPVDPKLPEDRISYMLADSAAACLLTHQEMK-------------E 573
Query: 330 ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389
E +G ++ + D + + + +D DP
Sbjct: 574 QAAELPYTGTTLFI------------------DDQTRF------EEQASDPATAIDPNDP 609
Query: 390 LFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-- 447
+++YTSG+TGKPKG + T AF D +++ +Y
Sbjct: 610 AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFS--DQDT--------FLSVSNYAFD 659
Query: 448 -----TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
Y MLN A +++ + T D+ R D++ + V + + L L G +
Sbjct: 660 AFTFDFYASMLNAARLIIADEH-TLLDTERLTDLILQENVNVMFATTALFNLLTDAGED- 717
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
K LR + GE + R ++G +
Sbjct: 718 ----WMKGLRCILFGGERASVPHVRKALRIMGPGK 748
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
GHRI E+E L +P +A VV HE I A++ + +E+++ L
Sbjct: 868 GHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS-AEDVKAHL---- 922
Query: 696 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
+KQ+ A+ P + LP T +GK+ +R+L
Sbjct: 923 KKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 8e-19
Identities = 45/343 (13%), Positives = 102/343 (29%), Gaps = 91/343 (26%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA-VIIYLPMLMELPIAM 274
A + +LTY +L +Q + A ++ + + +++Y M + ++
Sbjct: 16 QTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSF 69
Query: 275 LACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
L V AG S+ +A+ I +++I
Sbjct: 70 LG---------SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIH--------------- 105
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
A L A V ++ + + +WV
Sbjct: 106 --AAGLSIDAVGQQIQTVSAEELLENEGGSVS----------------------QDQWVK 141
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+ +++YTSGSTG PKGV + + F + ++
Sbjct: 142 EHETFYIIYTSGSTGNPKGVQISAAN-LQSFTDWICADFPVSGGKI--------FLNQAP 192
Query: 446 YV-------TYGPMLNGASVVVFEGAPTYPDSGRS----WDIVDKYKVTIFYTAPTLVRS 494
+ Y + +G ++ D+ ++ + K + ++ + P+ V+
Sbjct: 193 FSFDLSVMDLYPCLQSGGTLHC---VT--KDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ D ++ GE + S + ++
Sbjct: 248 CLMDPG--FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAK 288
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
G+R+ E+E + A V+ + + + A + E E L A+
Sbjct: 405 GYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQ---LTSAI 461
Query: 696 RKQIGA----FAAPDKIHWAPGLPKTRSGKIMRRIL 727
+K++ A + P K + + T +GKI R+ +
Sbjct: 462 KKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRI 497
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-18
Identities = 48/329 (14%), Positives = 94/329 (28%), Gaps = 73/329 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ AI ++ Y QLL QL++YL + + G + +Y E +L
Sbjct: 42 HREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A G + + + A+ ++++ + A
Sbjct: 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD-----------------CSTTPTPA 138
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
V V +P P A+ ++ ++
Sbjct: 139 NGLPCVPV--------------------------RHLPAAPASVARPCFAADQIAYINFS 172
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------T 448
SG+TG+PK + T G AF P ++
Sbjct: 173 SGTTGRPKAIACTHAGITRLCLGQSFLAFA--PQMR--------FLVNSPLSFDAATLEI 222
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
+G +LNG V+ + D G ++ + + +L +L+ +
Sbjct: 223 WGALLNGGCCVLND--LGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD-----CL 275
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
LR L + G+ ++ R
Sbjct: 276 GGLRQLLTGGDILSVPHVRRALLRHPRLH 304
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 20/97 (20%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
G+R+ +E P + A++ E Q + A+ + P + L + L
Sbjct: 426 GYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASP--QALLRQL---- 479
Query: 696 RKQIGAFAAPD-----KIHWAPGLPKTRSGKIMRRIL 727
P LP T GK+ R L
Sbjct: 480 ---------PTWQRPHACVRVEALPLTAHGKLDRAAL 507
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 1e-17
Identities = 56/331 (16%), Positives = 111/331 (33%), Gaps = 86/331 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ VAI E + LTY +L + QLA + G+ K V I + ++L I +L
Sbjct: 54 NNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A V+ AG + + + + D + ++++T +
Sbjct: 108 A---------VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV----------- 147
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
+ +G + I ++ + +
Sbjct: 148 --HLIHNIQFNGQVEIF------------------EEDTIKIREGTNLHVP------SKS 181
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
D +++YTSG+TG PKG + G + + F+ + + D S
Sbjct: 182 TDLAYVIYTSGTTGNPKGTMLEHKG-ISNLKVFFENSLNVTEKDR--------IGQFASI 232
Query: 447 V-------TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
+ +L GAS+ + T D + +++ ++T+ PT V L +
Sbjct: 233 SFDASVWEMFMALLTGASLYIILKD-TINDFVKFEQYINQKEITVITLPPTYVVHLDPER 291
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFF 530
S++ L + G +PS +
Sbjct: 292 I--------LSIQTLITAGSATSPSLVNKWK 314
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 636 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV 695
GHR+ EVES L+ H +E AV + + + A+ + +P E+LR+
Sbjct: 437 GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPL-EQLRQFS---- 491
Query: 696 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727
+++ + P +P T +GKI R+ L
Sbjct: 492 SEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 81.3 bits (200), Expect = 1e-16
Identities = 43/297 (14%), Positives = 84/297 (28%), Gaps = 39/297 (13%)
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG---GYMV 414
R ++VP+ + A+ + + G+TG PK V+ +
Sbjct: 70 DISHCLRQEPVANLVPQ--------GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALIS 121
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV-------------- 460
+ +++ + I G L G +
Sbjct: 122 WRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEG 181
Query: 461 -FEGAPTYPDSG--RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517
Y + + + + T P ++R L++ V ++SL +
Sbjct: 182 DTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITLG 239
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQP 577
G +N ++ + + C S ++ T G + L + +
Sbjct: 240 GTELNLDEIKFIASEILP-DCEFSASYGSTSALG-VSRSLLITSESQQVIYDSFSPFITY 297
Query: 578 VIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
+VD + GE G + + P AF ER G F GD
Sbjct: 298 DVVDSITAQTVEYGER-GNVIVTHLSPWAFYPRV--AERDTAIRLPGVSG--FAGDR 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 72/584 (12%), Positives = 134/584 (22%), Gaps = 203/584 (34%)
Query: 6 QPHVDGHYYYYYNNNVCLSNLGVGGGASRGSTVGASSYSKPLNKSSSPPLKLIRQS---- 61
QP + Y + + N ++K N S P +RQ+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN---------------QVFAK-YNVSRLQPYLKLRQALLEL 147
Query: 62 -----------GGGGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRL 110
G G +A C + KI L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLS-----------YKVQCK------MD---FKIFWL 187
Query: 111 NAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF-WADIASEFYW 169
N L + ++ Q + S
Sbjct: 188 N---LKN--CNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 170 KEKWGQRVCSENL----DVRKGNVKIEWFKGGITNICYNC--L----DRNIEAGLGDKVA 219
K K + L +V+ F C L + + L
Sbjct: 239 KSKPYENC----LLVLLNVQNAKA-WNAFNLS-------CKILLTTRFKQVTDFLSAATT 286
Query: 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279
+ + TLT ++ L YL + D LP + L +
Sbjct: 287 THISLDH--HSMTLTPDEVKS---LLLKYL---DCRPQD-----LPREV-LTTNPRRLSI 332
Query: 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDECAKSG 338
I +++ G + K + L +S
Sbjct: 333 IAE------------------------------SIRDGLATWDNWKHVNCDKLTTIIES- 361
Query: 339 ISVDVCLTYENQS-----AMTRENTK---------WQDGRDIWWQDVVPKYPTKCEVEWV 384
S++V E + ++ + W D VV K VE
Sbjct: 362 -SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 385 DAEDP---------LFLLYTSGSTGKPKGVLHTT--GGYMVHTATTFKYAFDYK---PSD 430
+ P ++L + LH + Y + + D D
Sbjct: 419 --KQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPK----TFDSDDLIPPYLD 470
Query: 431 VYWCTADCGWITGHSYVTY--GPMLNGASVVVFEGAPTYPD----------SGRSW---- 474
Y+ +S++ + + + + +F + D +W
Sbjct: 471 QYF----------YSHIGHHLKNIEHPERMTLFR--MVFLDFRFLEQKIRHDSTAWNASG 518
Query: 475 ----DIVD--KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
+ YK I P R L+ +++ + +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYER-LVNAILDFLPKIEENLIC 561
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 759 | |||
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.33 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.21 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 97.77 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 97.61 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 97.57 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 93.62 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 91.19 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 88.22 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 86.43 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 84.59 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 84.14 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 82.96 |
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-97 Score=873.78 Aligned_cols=618 Identities=53% Similarity=0.983 Sum_probs=523.8
Q ss_pred CChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHHHHHhh
Q 004348 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 208 (759)
Q Consensus 129 ~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~ 208 (759)
++..|....... .++|++|++++++||++||+++++.+.|.+++++ +++++.. ......+||+++++|+++++|++
T Consensus 9 ~~~~~~~~~~~~-~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~wf~~~~~n~~~~~l~~ 84 (652)
T 1pg4_A 9 IPANIADRCLIN-PEQYETKYKQSINDPDTFWGEQGKILDWITPYQK-VKNTSFA--PGNVSIKWYEDGTLNLAANCLDR 84 (652)
T ss_dssp CCHHHHHHCSSC-HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSC-CEEEECC--TTCCEEEESTTCEECHHHHHTGG
T ss_pred CCHHHHhhccCC-hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCcc-cccCccc--cCCCCCEECCCCChhHHHHHHHH
Confidence 444455544332 4789999999999999999999877999998887 6643321 00114599999999999999999
Q ss_pred cccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecC
Q 004348 209 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288 (759)
Q Consensus 209 ~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpld 288 (759)
+++ ++||++|+++.+++.+..+++||+||+++++++|++|+++||++||+|+|+++|++|+++++|||+++|++++|++
T Consensus 85 ~a~-~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 85 HLQ-ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp GHH-HHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred Hhc-cCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecC
Confidence 998 7999999998754334578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccch
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 368 (759)
|.++.+++.++|+++++++||+++......+.+.++..+++++.... ...+..+++++.... ...+...++.+|
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~~~~~----~~~~~~~~~~~~ 237 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN--VTSVEHVIVLKRTGS----DIDWQEGRDLWW 237 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT--CCSCCEEEEECSSCC----CCCCCBTTEEEH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC--cCCCCEEEEEeCCCC----cccccCCCceeH
Confidence 99999999999999999999999988877888888887776654320 013566777654321 111222345677
Q ss_pred hhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHH
Q 004348 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (759)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~ 448 (759)
++.+.......+.....++|++||+|||||||+||||+++|++++.+........++++++|++++.+|++|++++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~ 317 (652)
T 1pg4_A 238 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317 (652)
T ss_dssp HHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTT
T ss_pred HHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHH
Confidence 77765443333444567899999999999999999999999997766656666779999999999999999999987889
Q ss_pred HHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHH
Q 004348 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528 (759)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 528 (759)
+.+|++|++++++++.+.++++..++++|++++||+++++|++++.|++.........++++||.+++|||+++++++++
T Consensus 318 ~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~ 397 (652)
T 1pg4_A 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEW 397 (652)
T ss_dssp HHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHH
Confidence 99999999999998766667999999999999999999999999999987544344568899999999999999999999
Q ss_pred HHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccc
Q 004348 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608 (759)
Q Consensus 529 ~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY 608 (759)
+.+.+|..+++++|.||+||+++.++...++..+.+++++|+|++|++++|+|++|+++|.|+.|||+|+||||++++||
T Consensus 398 ~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 398 YWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp HHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEE
T ss_pred HHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhh
Confidence 99999855689999999999997666554433345778999999999999999999999999999999999999999999
Q ss_pred cCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCe
Q 004348 609 YGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669 (759)
Q Consensus 609 ~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 669 (759)
|+++++|.+.||...+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++++++..++
T Consensus 478 ~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~ 557 (652)
T 1pg4_A 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557 (652)
T ss_dssp TTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEE
T ss_pred cCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCe
Confidence 99999999999877789999999998 89999999999999999999999999999998899
Q ss_pred EEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhh
Q 004348 670 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGV 749 (759)
Q Consensus 670 ~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~ 749 (759)
.++|||+++++...++++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++++++++.++++||++
T Consensus 558 ~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~ 637 (652)
T 1pg4_A 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGV 637 (652)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTH
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCccccCCHHH
Confidence 99999999887666667789999999999999999999999999999999999999999999987667889999999999
Q ss_pred HHHHHhhh
Q 004348 750 VDQLIALA 757 (759)
Q Consensus 750 ~~~~~~~~ 757 (759)
+++|++..
T Consensus 638 ~~~~~~~~ 645 (652)
T 1pg4_A 638 VEKLLEEK 645 (652)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998753
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-97 Score=876.09 Aligned_cols=618 Identities=48% Similarity=0.853 Sum_probs=511.8
Q ss_pred CCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcc-cccccccccccccccccccC-CC-cccccCCCccccHHHH
Q 004348 128 LPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRK-GN-VKIEWFKGGITNICYN 204 (759)
Q Consensus 128 y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~wf~~~~~n~~~~ 204 (759)
..+.||...+... +++|.++++++++||+.||++++++ +.|.++|++ +++.+.+. . ++ ...+||+++++|++++
T Consensus 10 ~~~~~~~~~~~~~-~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~wf~~~~~n~~~~ 86 (663)
T 1ry2_A 10 HSSGLVPRGSHMG-LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDK-VFIPDPKT-GRPSFQNNAWFLNGQLNACYN 86 (663)
T ss_dssp ---------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSC-SBCBCSSS-CSBCSTTCCBSTTCEECHHHH
T ss_pred ccccccccccCCC-hhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCce-eecCcccc-ccCCCCCCCcCCCCCccHHHH
Confidence 3456777776664 6789999999999999999999887 899999988 77544110 1 11 1149999999999999
Q ss_pred HHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCe
Q 004348 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (759)
Q Consensus 205 ~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav 283 (759)
+|+++++ ++||++|+++.++..+..+++||+||+++++++|+.|+ ++||++||+|+|+++|++|++++||||+++|++
T Consensus 87 ~l~~~a~-~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav 165 (663)
T 1ry2_A 87 CVDRHAL-KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAI 165 (663)
T ss_dssp HTHHHHT-TCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred HHHHHhc-cCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 9999998 89999999997543345789999999999999999999 999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCC
Q 004348 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (759)
Q Consensus 284 ~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (759)
++|++|.++.+++.++|++++|++||+++...+.++.+.++..+++++..+ +.++++++++..... ...+...
T Consensus 166 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~~~~~~---~~~~~~~ 238 (663)
T 1ry2_A 166 HSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET----PGVRHVLVYRKTNNP---SVAFHAP 238 (663)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC----TTCCEEEEECSSCCS---SCCCCSS
T ss_pred EEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC----CCCceEEEEecCCCC---ccccCCC
Confidence 999999999999999999999999999999888888888888887765543 456777776543210 0112233
Q ss_pred CccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhch
Q 004348 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (759)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g 443 (759)
++.+|++.+.......+.....++|++||+|||||||+||||+++|++++.+........++++++|++++.++++|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g 318 (663)
T 1ry2_A 239 RDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG 318 (663)
T ss_dssp SEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHH
T ss_pred ccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhh
Confidence 45678777654433344455678999999999999999999999999977666666667799999999999999999999
Q ss_pred hhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCH
Q 004348 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (759)
Q Consensus 444 ~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (759)
+++.++.+|++|++++++++.+.++++..++++|++++||+++++|++++.|++.........++++||.+++|||++++
T Consensus 319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 398 (663)
T 1ry2_A 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA 398 (663)
T ss_dssp HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCH
Confidence 87889999999999999988766679999999999999999999999999998876543455689999999999999999
Q ss_pred HHHHHHHHHhCCCCccEeeeeccccccceecccCC-CCCCCCCCCcCCCCCCceEEEECC-CCcccCC-CceEEEEEecC
Q 004348 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG-ECSGYLCIKSS 600 (759)
Q Consensus 524 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~-g~~GEL~I~g~ 600 (759)
++++++.+.+|..+++++|.||+||+++.++...+ +..+.+++++|+|++|++++|+|+ +|++++. |+.|||+|+||
T Consensus 399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~ 478 (663)
T 1ry2_A 399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAA 478 (663)
T ss_dssp HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSC
T ss_pred HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecC
Confidence 99999999988556899999999999876655443 233567889999999999999999 9999998 99999999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
||++++|||+++++|.+.|+.+.+|||+|||+|+ +|+||+|.|||++|.+||.|.+|+|++
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg 558 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG 558 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence 9999999999999999999887789999999998 899999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCC---C-cH---HHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 662 VEHEVKGQGIYAFVTLVEGVP---Y-SE---ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~---~-~~---~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
++++..++.++|||+++++.. . ++ ++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++
T Consensus 559 ~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 559 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred EecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 999888999999999987643 2 22 4578999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCCCCCChhhHHHHHhh
Q 004348 735 LDELGDTSTLADPGVVDQLIAL 756 (759)
Q Consensus 735 ~~~~~~~~~~~~p~~~~~~~~~ 756 (759)
.++++|.++++||+++++|++.
T Consensus 639 ~~~~~~~~~l~~p~~~~~~~~~ 660 (663)
T 1ry2_A 639 SDQLGDVSTLSNPGIVRHLIDS 660 (663)
T ss_dssp -----------CCHHHHHHHHT
T ss_pred CCCCCCcccccCHHHHHHHHHH
Confidence 6678999999999999999874
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-82 Score=798.28 Aligned_cols=553 Identities=20% Similarity=0.264 Sum_probs=456.1
Q ss_pred CCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccc-ccc
Q 004348 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SEN 181 (759)
Q Consensus 103 ~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~~~ 181 (759)
..++|||++.+.. ++++...++|++++|+++++++++++|.++|++++++|+++++++.. +. ..+... ++ .++
T Consensus 382 ~~~~~dL~l~~~~---~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~-l~-~~e~~~-~~~~~~ 455 (1304)
T 2vsq_A 382 EKSNYDLNLMASP---GDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINL-VD-DREREF-LLTGLN 455 (1304)
T ss_dssp CCCCSSEEEEEEC---SSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCC-CC-HHHHHH-HHTTTS
T ss_pred cccccCeEEEEec---CCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCC-CC-HHHHHH-HHHhcC
Confidence 4688999887542 35688899999999999999999999999999999999999988742 11 111111 11 111
Q ss_pred ccccCCCcccccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004348 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (759)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Va 261 (759)
.... . ++ ..+++++|+++++ ++||++|+++. ++++||+||+++++++|++|++.|+++|++|+
T Consensus 456 ~~~~------~-~~---~~~l~~~~~~~~~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~ 518 (1304)
T 2vsq_A 456 PPAQ------A-HE---TKPLTYWFKEAVN-ANPDAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVA 518 (1304)
T ss_dssp CCCC------C-CC---CCCHHHHHHHHHH-HCTTSEEEESS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCCC------C-CC---CCCHHHHHHHHHH-hCCCCeEEEEC------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEE
Confidence 1111 0 11 1368999999999 89999999976 68999999999999999999999999999999
Q ss_pred EEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004348 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (759)
Q Consensus 262 i~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 341 (759)
|+++|++++++++|||+|+|++||||||.+|.+|+.++++++++++||++......... + +..
T Consensus 519 i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-------------~----~~~ 581 (1304)
T 2vsq_A 519 LYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-------------L----PYT 581 (1304)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-------------C----CCC
T ss_pred EEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-------------c----CCC
Confidence 99999999999999999999999999999999999999999999999998764321100 0 111
Q ss_pred cEEEEeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH
Q 004348 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (759)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (759)
...+.++... ... . ....+.....++++|||+|||||||+||||+++|+++ .+. .+..
T Consensus 582 ~~~~~~~~~~------------------~~~-~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l-~~~-~~~~ 639 (1304)
T 2vsq_A 582 GTTLFIDDQT------------------RFE-E-QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANI-QGL-VKHV 639 (1304)
T ss_dssp SEEEESSCGG------------------GGG-S-CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHH-HHH-HSSC
T ss_pred CcEEEecccc------------------ccc-c-ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHH-HHH-HHHH
Confidence 2223222110 000 0 1111223457899999999999999999999999995 444 3344
Q ss_pred HHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc
Q 004348 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (759)
Q Consensus 422 ~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~ 501 (759)
..+++.++|+++++++++|+.+ .+++|.+|++|+++++.+.... .++..+++.|++++||+++++|++++.|.+....
T Consensus 640 ~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~-~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~ 717 (1304)
T 2vsq_A 640 DYMAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHTL-LDTERLTDLILQENVNVMFATTALFNLLTDAGED 717 (1304)
T ss_dssp CSSCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGGT-TCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH
T ss_pred HhcCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhhc-CCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh
Confidence 5678899999999999999987 6899999999999999876433 4999999999999999999999999999875432
Q ss_pred ccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC--CCCCCCCcCCCCCCceEEE
Q 004348 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVI 579 (759)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~~iG~p~~g~~~~I 579 (759)
.+++||.+++|||+++++++++|.+.++ .++++|.||+||++++++...... ......++|+|++|++++|
T Consensus 718 -----~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 790 (1304)
T 2vsq_A 718 -----WMKGLRCILFGGERASVPHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYI 790 (1304)
T ss_dssp -----HHHTCSEEEEESSCCCHHHHHHHHHHHC--TTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEE
T ss_pred -----cCCCccEEEEecCCCCHHHHHHHHHhCC--CCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEE
Confidence 3578999999999999999999999887 478999999999998665432211 1234578999999999999
Q ss_pred ECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc----cCCcEEEeCCeee-------------------cc
Q 004348 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCS-------------------SG 636 (759)
Q Consensus 580 vD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~----~~~g~y~TGDl~~-------------------~G 636 (759)
+|++++++|.|+.|||+|+| +++++||+|+|+.|.+.|.. +.++||||||+|+ +|
T Consensus 791 ~d~~~~~~p~G~~GEl~i~G--~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G 868 (1304)
T 2vsq_A 791 LNEQSQLQPFGAVGELCISG--MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868 (1304)
T ss_dssp ECTTSCBCCTTCCEEEEEEE--TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETT
T ss_pred ECCCcCCCCCCCceEEEEec--cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECC
Confidence 99999999999999999999 99999999999999999864 2356999999998 89
Q ss_pred EeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCC
Q 004348 637 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716 (759)
Q Consensus 637 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~ 716 (759)
+||+|+|||++|.+||+|.+|+|++.++..+++.++|||+.+.... .++|+++|+++||.||+|+.|+++++||+
T Consensus 869 ~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~-----~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~ 943 (1304)
T 2vsq_A 869 HRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS-----AEDVKAHLKKQLPAYMVPQTFTFLDELPL 943 (1304)
T ss_dssp EEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSC-----HHHHHHHHHHHSCGGGSCSEEEEESCCCC
T ss_pred EeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCC-----HHHHHHHHHHhChHhhhccEEEEecccCC
Confidence 9999999999999999999999999988888899999999865332 57899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHhc
Q 004348 717 TRSGKIMRRILRKIASR 733 (759)
Q Consensus 717 T~~GKvdR~~L~~~~~~ 733 (759)
|+||||||++|++....
T Consensus 944 t~~GKidR~~L~~~~~~ 960 (1304)
T 2vsq_A 944 TTNGKVNKRLLPKPDQD 960 (1304)
T ss_dssp CSSCSSCCSCCCCCCGG
T ss_pred CCCcccCHhhcCCcchh
Confidence 99999999999876543
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-79 Score=707.86 Aligned_cols=505 Identities=27% Similarity=0.357 Sum_probs=407.8
Q ss_pred ccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHH
Q 004348 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~i 271 (759)
+|......|+++++|+++++ .+||++|+++.++. +..+++||+||+++++++|++|+++||++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~-~~pd~~Al~~~~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYAR-DSPEKLAMIWCDDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHH-HCTTCEEEEEEESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHHHh-hCCCCEEEEEEcCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 55555667899999999999 89999999986443 44689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEeccC
Q 004348 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 350 (759)
Q Consensus 272 va~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~vi~~~~~ 350 (759)
+++|||+|+|++++|++|.++.+++.++++++++++||++.+.. +...+.+....+ +.+ ..++.++..
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~ 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAEC----GDIPLKKAKVGGD 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHH----CSCCCEEEEESSS
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhC----CCcceEEEEeCCc
Confidence 99999999999999999999999999999999999999987642 224444444444 344 444444322
Q ss_pred ccccccccccCCCCccchhhhcCCCCCCC--C--ccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCC
Q 004348 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKC--E--VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426 (759)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l 426 (759)
. ......+.+.+....... + .....++|++||+|||||||.||||+++|.+++ .........+++
T Consensus 195 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~-~~~~~~~~~~~~ 263 (580)
T 3etc_A 195 V----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPL-GHILTAKYWQNV 263 (580)
T ss_dssp C----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHH-HHHHHHHTTSCC
T ss_pred c----------ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHH-HHHHHHHHhhCC
Confidence 1 011233433333222211 1 124678999999999999999999999999844 444444555788
Q ss_pred CCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccC
Q 004348 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506 (759)
Q Consensus 427 ~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~ 506 (759)
.+++++++.++++|+.+....++.+++.|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~ 338 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHY 338 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccC
Confidence 99999999999999988655688999999999998632 359999999999999999999999999998863 3455
Q ss_pred CCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcc
Q 004348 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586 (759)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~ 586 (759)
++++||.+++|||+++++++++|.+.+| ++++|.||+||++..++.... ...+++++|+|++|++++|+|++|++
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~g~~ 413 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMDRDGRL 413 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEECTTSCB
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEECCCCCC
Confidence 7899999999999999999999999987 789999999999876543322 13567899999999999999999999
Q ss_pred cCCCceEEEEEecC---CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHH
Q 004348 587 IEGECSGYLCIKSS---WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEV 644 (759)
Q Consensus 587 vp~g~~GEL~I~g~---~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eI 644 (759)
+|.|+.|||+|+|+ .+++++|||++|+.+.+.|. +|||+|||+|+ +|+||+|.||
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eI 490 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHH
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99999999999962 26899999999999999873 78999999998 8999999999
Q ss_pred HHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccH
Q 004348 645 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 724 (759)
Q Consensus 645 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR 724 (759)
|++|.+||+|.+|+|++++++..++.++|+|+++++...++++.++|+++|+++||+||+|+.|+++++||+|+||||+|
T Consensus 491 E~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R 570 (580)
T 3etc_A 491 ESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR 570 (580)
T ss_dssp HHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------
T ss_pred HHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcH
Confidence 99999999999999999999999999999999998877677778999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004348 725 RILRKIASR 733 (759)
Q Consensus 725 ~~L~~~~~~ 733 (759)
++|++++.+
T Consensus 571 ~~Lr~~~~~ 579 (580)
T 3etc_A 571 VEIRDKDQS 579 (580)
T ss_dssp ---------
T ss_pred HHHHhHhhc
Confidence 999988653
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-77 Score=686.63 Aligned_cols=486 Identities=23% Similarity=0.343 Sum_probs=411.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|.++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLENLS-NHSSKPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTTGG-GSTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhh-cCCCceEEEECC----CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 58899999999 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++... +.+.+..... .+ .++.++...
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~--------- 153 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY---------EKVKDFARES-----DV-KVMCVDSAP--------- 153 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT---------HHHHHHHHHH-----TC-EEEESSCCC---------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH---------HHHHHHHhhc-----Cc-eEEEecCCC---------
Confidence 99999999999999999999999999999987642 2233332222 22 234333211
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhCCCCCcEEEEecC
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~l~~~d~~l~~~~ 437 (759)
.....|.+.........+.....++|++||+|||||||.||||+++|++++.+...... ..+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 231 (536)
T 3ni2_A 154 --DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231 (536)
T ss_dssp --TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSC
T ss_pred --CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecC
Confidence 11233444443333333344567899999999999999999999999996544333221 1356788999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 232 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 232 MFHIYALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSG 305 (536)
T ss_dssp TTSHHHHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceEEEEC
Confidence 99999877778899999999999864 489999999999999999999999999998764 345678999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccC---CCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceE
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~---~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~G 593 (759)
||++++++.++|.+.++ +++++|.||+||++.+++... ......+++++|+|++|++++|+| ++++++|.|+.|
T Consensus 306 Ge~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 306 GAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp SSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999985 489999999999997654321 112234678999999999999999 579999999999
Q ss_pred EEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCcc
Q 004348 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQC 654 (759)
Q Consensus 594 EL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V 654 (759)
||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|
T Consensus 384 El~v~g--~~v~~GY~~~p~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 459 (536)
T 3ni2_A 384 EICIRG--DQIMKGYLNDPEATSRTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEI 459 (536)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTE
T ss_pred EEEEeC--cccchhhcCChhHHHhhccC--CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 99999999999999988743 78999999998 89999999999999999999
Q ss_pred ceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHh
Q 004348 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 732 (759)
Q Consensus 655 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~ 732 (759)
.+|+|++++++..++.++|||+..++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.
T Consensus 460 ~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 460 SDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---EDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred ceEEEEeeecCCCCceeEEEEEecCCCCCC---HHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 999999999998999999999998776554 578999999999999999999999999999999999999998765
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-77 Score=688.80 Aligned_cols=491 Identities=20% Similarity=0.282 Sum_probs=409.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 26 TFGDLLRDRAA-KYGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CHHHHHHHHHH-HHTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCCEEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 58899999998 89999999976 688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++.... ......+......+ +.++.+++.+...
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQSKL----PTLKNIIVAGEAE--------- 161 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHHHHC----TTCCCEEEESCCT---------
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHHhcC----CCccEEEEcCCcc---------
Confidence 999999999999999999999999999999875321 11122232322222 4455454433211
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
.|.+.........+.....++|++||+|||||||+||||+++|++++ +........++++++|++++.+|++|
T Consensus 162 ------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 162 ------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI-YSLKRSVEVCWLDHSTVYLAALPMAH 234 (539)
T ss_dssp ------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHH-HHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHH-HHHHHHHHhhCCCCCCEEEEeecccc
Confidence 01111111111112234568999999999999999999999999954 44555666789999999999999999
Q ss_pred hchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
++++.. .++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred cchhhHHHHHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCccceeEEEEcCC
Confidence 988654 68999999999999754 489999999999999999999999999987642 23457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCc-eEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~-~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++.++|.+.+| ++++|.||+||++...+. .........+++|+|+++. +++|+|++++++|.|+.|||+|+
T Consensus 309 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 384 (539)
T 1mdb_A 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (539)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHhC---CcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEee
Confidence 999999999999987 789999999997643332 1111112346899999765 79999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|
T Consensus 385 g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 460 (539)
T 1mdb_A 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (539)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred C--cccchhhcCChhhhhhhccC--CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 89999999999999998864 78999999998 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCC
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDEL 738 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~ 738 (759)
++.+++..++.++|||++++.. .+ .++|+++|+++ ||.||+|+.|+++++||+|+||||||++|++.+.++++++
T Consensus 461 v~~~~~~~g~~~~a~vv~~~~~-~~---~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~ 536 (539)
T 1mdb_A 461 VSMPDQFLGERSCVFIIPRDEA-PK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536 (539)
T ss_dssp EEEEETTTEEEEEEEEEESSSC-CC---HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC
T ss_pred EeccccccCceEEEEEEECCCC-CC---HHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcc
Confidence 9999998899999999987432 23 57899999998 9999999999999999999999999999999998877766
Q ss_pred CC
Q 004348 739 GD 740 (759)
Q Consensus 739 ~~ 740 (759)
++
T Consensus 537 y~ 538 (539)
T 1mdb_A 537 FK 538 (539)
T ss_dssp --
T ss_pred cc
Confidence 53
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-76 Score=682.43 Aligned_cols=501 Identities=25% Similarity=0.343 Sum_probs=420.1
Q ss_pred ccCCCccccHHHHHHhhccccc-----CCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcC
Q 004348 192 EWFKGGITNICYNCLDRNIEAG-----LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLP 265 (759)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~-----~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~ 265 (759)
.|+.....|+++++|+++++ . +||++|+++.+.. +..+++||+||+++++++|++|+++ |+++||+|+|+++
T Consensus 30 ~~~~~~~~~~~~~~l~~~a~-~~~a~~~p~~~al~~~~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~ 107 (570)
T 3c5e_A 30 HQEVPAKFNFASDVLDHWAD-MEKAGKRPPSPALWWVNGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107 (570)
T ss_dssp BCCCCSBCCHHHHTHHHHHH-HHHTTSSCCCEEEEEECSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECC
T ss_pred cccCCccccHHHHHHHHHHh-hccccCCCCceEEEEEcCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 67777778899999999988 7 9999999986321 2357899999999999999999998 9999999999999
Q ss_pred CChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEE
Q 004348 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (759)
Q Consensus 266 ~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi 345 (759)
|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... ..+......+ +.++.++
T Consensus 108 n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~ 174 (570)
T 3c5e_A 108 RVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---------QEVDTVASEC----PSLRIKL 174 (570)
T ss_dssp SCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH---------HHHHHHGGGC----TTCCEEE
T ss_pred CCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH---------HHHHHHhhcC----CceeEEE
Confidence 99999999999999999999999999999999999999999999987642 2222222222 3455555
Q ss_pred EeccCccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHH-HHHHHHHHh
Q 004348 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKYAF 424 (759)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~-~~~~~~~~~ 424 (759)
.++.... .....|.+.+.......+.....+++++||+|||||||.||||+++|+ .+.+ ..... ..+
T Consensus 175 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~ 242 (570)
T 3c5e_A 175 LVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT 242 (570)
T ss_dssp EESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred EecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence 5543110 011234443332222222234568999999999999999999999999 4542 33333 567
Q ss_pred CCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccc
Q 004348 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504 (759)
Q Consensus 425 ~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~ 504 (759)
++.++|++++.+|++|+.++...++.+|..|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ..
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~ 317 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP--KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LS 317 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TT
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---cc
Confidence 8999999999999999998766789999999999998642 359999999999999999999999999998763 23
Q ss_pred cCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCC
Q 004348 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (759)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g 584 (759)
..++++||.+++|||+++++++++|.+.++ ++++|.||+||++..++.... ...+.+++|+|+++++++|+|+++
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~g 392 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIIDDKG 392 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEECTTS
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHhC---CchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEECCCC
Confidence 446899999999999999999999999887 789999999999865543221 134678999999999999999999
Q ss_pred cccCCCceEEEEEe-----cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeC
Q 004348 585 VEIEGECSGYLCIK-----SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIG 640 (759)
Q Consensus 585 ~~vp~g~~GEL~I~-----g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~ 640 (759)
+++|.|+.|||+|+ | |++++|||++|+.+.+.|. +|||+|||+|+ +|+||+
T Consensus 393 ~~~~~G~~GEl~v~~~~~~g--~~v~~GY~~~~~~t~~~f~---~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~ 467 (570)
T 3c5e_A 393 NVLPPGTEGDIGIRVKPIRP--IGIFSGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIG 467 (570)
T ss_dssp CBCCTTCCEEEEEECSSBCC--TTCCCEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEEC
T ss_pred CCCCCCCCCeeEEeccCCCC--chhhccccCChhHhhhhhc---CCccccceeEEEcCCceEEEEecCCCEEEECCEEEC
Confidence 99999999999999 8 8999999999999998873 68999999998 899999
Q ss_pred HHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCC--CCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCC
Q 004348 641 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 718 (759)
Q Consensus 641 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~--~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~ 718 (759)
|.|||++|.+||+|.+|+|++.+++..++.++|||+++++. ...+.+.++|+++|+++||.||+|+.|+++++||+|+
T Consensus 468 p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 547 (570)
T 3c5e_A 468 PSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTV 547 (570)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCT
T ss_pred HHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCC
Confidence 99999999999999999999999988899999999987654 2234567899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhcc
Q 004348 719 SGKIMRRILRKIASRQ 734 (759)
Q Consensus 719 ~GKvdR~~L~~~~~~~ 734 (759)
+|||+|++|++.+...
T Consensus 548 ~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 548 TGKIQRAKLRDKEWKM 563 (570)
T ss_dssp TCCBCHHHHHHHHTC-
T ss_pred CcCCcHHHHHHHHHhh
Confidence 9999999999987643
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-77 Score=692.29 Aligned_cols=493 Identities=20% Similarity=0.288 Sum_probs=380.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCC--CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ 278 (759)
++.++|+++++ ++||++|+++.+.. .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAAAE-KFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHHHH-HHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 57899999998 89999999988421 1223899999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccc
Q 004348 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 279 kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (759)
++|++++||+|.++.+++.++++++++++||+++... ..+...... ..+..+++.+..
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY---------ENFKPVLEK-----TGVERVFVVGGE-------- 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH---------HHHHHHHTT-----SCCCEEEEETCS--------
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHHhh-----CCCcEEEEeCCC--------
Confidence 9999999999999999999999999999999987642 222222221 234555544321
Q ss_pred ccCCCCccchhhhcCCCCCCCCccccCC-CCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecC
Q 004348 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~ 437 (759)
...+.+.........+.....+ +|+|||+|||||||+||||+++|++++ +........+++.++|++++.+|
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLA-ANALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHH-HHHHHHHHHHCCCTTCEEECCSC
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHH-HHHHHHHHHcCCCCCCEEEEeCc
Confidence 1223333332222222223334 899999999999999999999999954 44555667789999999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|+.++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++|
T Consensus 230 ~~~~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 230 MFHSAEFGL-VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp TTSHHHHHH-HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 999988654 7889999999999863 49999999999999999999999999998764322223578999999999
Q ss_pred CCCCCHHHHHHHHHH----hCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCce
Q 004348 518 GEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 592 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~----~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~ 592 (759)
||++++++.+++.+. ++.++++++|.||+||++.+++...... ..+.+++|+|++|++++|+| ++++++|.|+.
T Consensus 305 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp SSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 999999999999987 6655689999999999998766443222 24567899999999999999 79999999999
Q ss_pred EEEEEecCCCcccccccCChhhHHhhhcccCCc--EEEeCCeee-------------------ccEeeCHHHHHHHHhcC
Q 004348 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCS-------------------SGHRIGTAEVESALVSH 651 (759)
Q Consensus 593 GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g--~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~ 651 (759)
|||+|+| |++++|||++|+.+.+.|+.+.+| ||+|||+|+ +|+||+|.|||++|.+|
T Consensus 384 GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 384 GEIVIRG--PNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp EEEEEES--TTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTS
T ss_pred eEEEEEC--cchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 9999999 999999999999999998644466 999999998 89999999999999999
Q ss_pred CccceEEEEeEecCCCCeEEEEEEEEcCC--CCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 652 PQCAEAAVVGVEHEVKGQGIYAFVTLVEG--VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 652 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~--~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
|+|.+|+|++++++..++.++|||+++++ ...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 462 p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 538 (549)
T 3g7s_A 462 EAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD---EEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLRE 538 (549)
T ss_dssp TTEEEEEEECCCC------CEEEEEECSTTTTSCC---HHHHHHHHHTTCC-----CCCCEEEECC--------------
T ss_pred CCeeeEEEEeeEccccCceEEEEEEECCCccCcCC---HHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHH
Confidence 99999999999998889999999999876 2333 678999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 004348 730 IASRQ 734 (759)
Q Consensus 730 ~~~~~ 734 (759)
.+..+
T Consensus 539 ~~~~~ 543 (549)
T 3g7s_A 539 KEAEG 543 (549)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 87654
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-76 Score=679.91 Aligned_cols=480 Identities=21% Similarity=0.281 Sum_probs=400.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 17 ~l~~~l~~~a~-~~p~~~A~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 17 NIGWMLRQRAT-VSPRLQAYVEP----STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEG----GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCeEEEeC----CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 68899999999 89999999986 22459999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|++.... ..+....... .....++.+..
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~----------- 147 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA---------PVIDAIRAQA----DPPGTVTDWIG----------- 147 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHHHSS----SCCTTCCEEEE-----------
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchH---------HHHHHHHhcc----CCccEEEEccC-----------
Confidence 99999999999999999999999999999976532 2222222211 11111111110
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...+.+.+.......+.....++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++|
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~~ 222 (517)
T 3r44_A 148 ----ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESV-HSAASSWASTIDVRYRDRLLLPLPMFH 222 (517)
T ss_dssp ----HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHH-HHHHHHHHHHSCCCTTCEEEECSCTTS
T ss_pred ----cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHH-HHHHHHHHHhcCCCCCCEEEEeCchHH
Confidence 011222222222233344567899999999999999999999999995 455556667789999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.++...+ .+++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||+
T Consensus 223 ~~~~~~~~-~~~~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 223 VAALTTVI-FSAMRGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAP 295 (517)
T ss_dssp HHHHHHHH-HHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCCEEEECSSC
T ss_pred HHHHHHHH-HHHhcCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCcccEEEECCCC
Confidence 99864434 45559999999854 499999999999999999999999999987643 334578999999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecC
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~ 600 (759)
+++++.++|.+. + ++++|.||+||+++..+.........+.+++|+|+++++++|+|+++++++.| .|||+|+|
T Consensus 296 l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g- 369 (517)
T 3r44_A 296 MPEALIKIYAAK-N---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKS- 369 (517)
T ss_dssp CCHHHHHHHHHT-T---CEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEE-
T ss_pred CCHHHHHHHHhc-C---CcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeC-
Confidence 999999999886 4 89999999999987655433332245678999999999999999999999999 89999999
Q ss_pred CCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEe
Q 004348 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVG 661 (759)
Q Consensus 601 ~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 661 (759)
|++++|||++|+.+.+.| .+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++
T Consensus 370 -~~v~~GY~~~p~~t~~~f---~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~ 445 (517)
T 3r44_A 370 -DILLKEYWNRPEATRDAF---DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIG 445 (517)
T ss_dssp -TTSCSEETTCHHHHHHTE---ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCCChhhhHhhh---cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEe
Confidence 899999999999999887 378999999998 899999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 662 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 662 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
++++..++.++++| ..++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.+.+
T Consensus 446 ~~~~~~g~~~~a~v-~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 446 LPDEKWGEIAAAIV-VADQNEVS---EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEETTTEEEEEEEE-EECTTTCC---HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ccccccCceEEEEE-ECCCCCCC---HHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 99998889899988 44443333 578999999999999999999999999999999999999999998654
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-76 Score=675.14 Aligned_cols=477 Identities=22% Similarity=0.335 Sum_probs=401.3
Q ss_pred HHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCe
Q 004348 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (759)
Q Consensus 204 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav 283 (759)
++|+++++ ++||++|+...... ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~-~~p~~~a~~~~~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFD-KLDDPHKLAIETAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHS-CCSCTTSEEEEETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHH-hCCCCceEEEecCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 56777887 89999888865322 678999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCC
Q 004348 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (759)
Q Consensus 284 ~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (759)
++|++|.++.+++.++++++++++||+++..... +....... . . .++.+....
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~----~-~-~~~~~~~~~------------ 132 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG---------IAAIAAKV----G-A-TVETLGPDG------------ 132 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT---------THHHHHHH----T-C-EEEECCTTS------------
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH---------HHHHHhhc----C-c-eEEEecCCc------------
Confidence 9999999999999999999999999998764321 11122222 1 1 233322111
Q ss_pred CccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhch
Q 004348 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (759)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g 443 (759)
...+.+.........+.....++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++|..+
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 210 (503)
T 4fuq_A 133 -RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNL-ASNSLTLVDYWRFTPDDVLIHALPIYHTHG 210 (503)
T ss_dssp -CSHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHH-HHHHHHHHHHTTCCTTCEEEECSCSSSHCC
T ss_pred -ccccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHH-HHHHHHHHHHhCCCCCCEEEEeCChHHHHH
Confidence 011111111112222233567899999999999999999999999995 455566667789999999999999999998
Q ss_pred hhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCH
Q 004348 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (759)
Q Consensus 444 ~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (759)
+...++.+++.|+++++.+. ++++.+++.++ ++|++.++|+++..|++... ....++++||.+++|||++++
T Consensus 211 ~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 211 LFVASNVTLFARGSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp CCCCHHHHHHTTCEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHhCCEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcEEEEECCCCCCH
Confidence 76677889999999999864 49999999998 89999999999999998754 234567899999999999999
Q ss_pred HHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceEEEEEecCCC
Q 004348 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWP 602 (759)
Q Consensus 524 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~GEL~I~g~~~ 602 (759)
++.++|.+.+| ++++|.||+||++..++... .....++++|+|++|++++|+| ++++++|.|+.|||+|+| |
T Consensus 283 ~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g--~ 355 (503)
T 4fuq_A 283 DTHREWSAKTG---HAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKG--P 355 (503)
T ss_dssp HHHHHHHHHHS---CCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEES--T
T ss_pred HHHHHHHHHhC---CCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEEC--C
Confidence 99999999987 78999999999987644322 2234668899999999999999 789999999999999999 9
Q ss_pred cccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEe
Q 004348 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVE 663 (759)
Q Consensus 603 ~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 663 (759)
++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|++++
T Consensus 356 ~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (503)
T 4fuq_A 356 NVFKGYWRMPEKTKSEFRD--DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVP 433 (503)
T ss_dssp TSCCCBTTCHHHHHHTBCT--TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred chhhhhcCChhhhHhhhCC--CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeE
Confidence 9999999999999998854 78999999998 89999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 664 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 664 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
++..++.++++|+.+++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.+
T Consensus 434 ~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 434 HADFGEGVTAVVVRDKGATID---EAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ETTTEEEEEEEEEECTTCCCC---HHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred chhcCceeEEEEEeCCCCCCC---HHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 998899999999998876655 5789999999999999999999999999999999999999998864
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-77 Score=694.08 Aligned_cols=462 Identities=17% Similarity=0.199 Sum_probs=381.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 tl~~~~~~~a~-~~Pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEMAA-LHPHREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCCeEEEcC------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 68999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++|+|+||.+|.+++.++++++++++||+++...... .... .+.+..
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------------~~~~-~~~~~~----------- 148 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------------NGLP-CVPVRH----------- 148 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------------TTSC-EEEGGG-----------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------------cCCc-eeeecc-----------
Confidence 99999999999999999999999999999765432110 0011 011100
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
..............++|+|||+|||||||+||||+++|+++ .+.... ...+++.++|++++.+|++|
T Consensus 149 -----------~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l-~~~~~~-~~~~~~~~~d~~l~~~p~~~ 215 (620)
T 4dg8_A 149 -----------LPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGI-TRLCLG-QSFLAFAPQMRFLVNSPLSF 215 (620)
T ss_dssp -----------CCCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHH-HHHHSS-CGGGTTCTTCEEEECSCTTS
T ss_pred -----------CCcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHH-HHHHHH-HHhhCCCCCCEEEEECccCH
Confidence 00011111222356899999999999999999999999995 443333 44578999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.+ .+++|.+|++|+++++.+. ..+++..++++|+++++|+++++|++++.|++... .++++||.+++|||+
T Consensus 216 ~~~-~~~~~~~l~~G~~~v~~~~--~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 216 DAA-TLEIWGALLNGGCCVLNDL--GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDI 287 (620)
T ss_dssp THH-HHHHHHHHTTTCEEEECCS--SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEeCcc--ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCc
Confidence 998 5789999999999999743 23599999999999999999999999999987543 257899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCC--CCCCCCCCCcCCCCCCceEEEECCCCcc-cCCCceEEEEE
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCI 597 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~~iG~p~~g~~~~IvD~~g~~-vp~g~~GEL~I 597 (759)
+++++.+++.+.++ +++++|.||+||++++++.... ........++|+|++|++++|+|+++++ +|.|+.|||+|
T Consensus 288 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 365 (620)
T 4dg8_A 288 LSVPHVRRALLRHP--RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365 (620)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCC--CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEE
Confidence 99999999988875 5899999999999976553321 1123456789999999999999999988 78999999999
Q ss_pred ecCCCcccccccCChhhHHhhhcccC---C--cEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 598 KSSWPGAFRTLYGDHERYETTYFKPF---P--GYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 598 ~g~~~~v~~GY~~~~e~~~~~~~~~~---~--g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
+| |++++||||+|+.|.+.|.... . +||+|||+|+ +|+||+|.|||++|.+||+
T Consensus 366 ~G--~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~ 443 (620)
T 4dg8_A 366 FG--AGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPG 443 (620)
T ss_dssp EE--TTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTT
T ss_pred ec--cccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCC
Confidence 99 9999999999999999986421 1 6999999998 9999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
|.+|+|++.+++. ...++++++.... .++++|+++||.||+|+.|+++++||+|+||||||++|++.+..
T Consensus 444 V~~a~Vv~~~~~~-~~~lv~~~~~~~~---------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 444 ILDCALLVRERNG-VKQLLCAWTGKAD---------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEECTT---------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred ccEEEEEEEeCCC-ceEEEEEEecChH---------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 9999999998874 4455555554322 23445778899999999999999999999999999999998765
Q ss_pred ccC
Q 004348 734 QLD 736 (759)
Q Consensus 734 ~~~ 736 (759)
...
T Consensus 514 ~~~ 516 (620)
T 4dg8_A 514 PLE 516 (620)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-75 Score=686.11 Aligned_cols=487 Identities=21% Similarity=0.297 Sum_probs=405.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 ~l~~~~~~~a~---pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 28 PLTDILTRHAA---SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp CTTHHHHTTTT---CCSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhC---CCCeEEecC------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 57899998863 999999976 789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.+|.+++.+++++++++++|++...... ............. +.+..+.......
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALF----SGDDFLNTFVTEH----SSIRVVQLLNDSG--------- 161 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG----SSSHHHHHHHHHS----TTCCEEEEETCCS---------
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEeccccccc----ccHHHHHHHhhcC----Cccceeeeccccc---------
Confidence 9999999999999999999999999999998764310 0112222222222 3444444443221
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...+.+...............++++|||+|||||||+||||+++|+++ .+........+++.++|++++.+|++|
T Consensus 162 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~ 236 (617)
T 3rg2_A 162 ----EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY-YYSVRRSVEICQFTQQTRYLCAIPAAH 236 (617)
T ss_dssp ----TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHH-HHHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ----ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHH-HHHHHHHHHhcCCCCcceEEEeccchh
Confidence 111222222222222333456899999999999999999999999995 455666677789999999999999888
Q ss_pred hchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
.+++.. +++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++.........++++||.+++|||
T Consensus 237 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 237 NYAMSSPGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp HHHHHSSHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 776543 68999999999999764 4889999999999999999999999999875432223346899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCC-CCceEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~-~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++++.++|.+.++ ++++|.||+||++...+.... .......++|+|+ ++++++|+|++++++|.|+.|||+|+
T Consensus 313 ~l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~ 388 (617)
T 3rg2_A 313 RLSATLAARIPAEIG---CQLQQVFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTR 388 (617)
T ss_dssp CCCHHHHHHHHHHTC---SEEEEEEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred cCCHHHHHHHHHHhC---CcEEEEeccCcceeecccCCC-cccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999999986 899999999999865442211 1112335789998 78899999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| |++++||||+|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|
T Consensus 389 G--~~v~~GY~~~p~~t~~~f~~--~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 389 G--PYTFRGYYKSPQHNASAFDA--NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp C--SSSCSCCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred C--ccccchhcCChhhhhhccCC--CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 9 99999999999999999854 78999999998 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhccc
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~ 735 (759)
++.+++..++.++|||+..+... .+++++++++ .||.||+|+.|+++++||+|+||||||++|++++....
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPLR-----AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCCC-----HHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 99999888999999999987433 5678999998 69999999999999999999999999999999886543
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-75 Score=664.77 Aligned_cols=468 Identities=22% Similarity=0.237 Sum_probs=393.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRAAT-RAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 57889999998 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEE--eCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVIT--SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (759)
|++++|++|.++.+++.+++++++++++|+ ++... .. ..... ..++ ++.+++
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~---~~~~~----~~~~-~~~~~~--------- 131 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DA---IFQSG----SGAR-IIFLGD--------- 131 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HH---HHHHC----CCCE-EEEGGG---------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hh---hhhcc----ccce-eEEecc---------
Confidence 999999999999999999999999999998 54321 11 10111 1222 222211
Q ss_pred ccCCCCccchhhhcCCC-----CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCC--CCCcE
Q 004348 359 KWQDGRDIWWQDVVPKY-----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDV 431 (759)
Q Consensus 359 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l--~~~d~ 431 (759)
..... ....+.....+++++||+|||||||+||||+++|++++ +........+++ .++|+
T Consensus 132 ------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~-~~~~~~~~~~~~~~~~~~~ 198 (504)
T 1t5h_X 132 ------------LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAE-SRVLFMSTQVGLRHGRHNV 198 (504)
T ss_dssp ------------TEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHH-HHHHHHHHTTCCCSSTTCE
T ss_pred ------------hhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHH-HHHHHHHHhhCCCCCCCce
Confidence 11100 01111134568999999999999999999999999954 445555566788 88999
Q ss_pred EEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCe
Q 004348 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (759)
Q Consensus 432 ~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (759)
+++.+|++|+.++.+.++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++|
T Consensus 199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~l 274 (504)
T 1t5h_X 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274 (504)
T ss_dssp EEECSCTTSHHHHTTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTC
T ss_pred EEeecchhhcchHHHHHHHHHHcCceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccc
Confidence 99999999999876778999999999999864 48999999999999999999999999998764221233468999
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCC---cccC
Q 004348 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG---VEIE 588 (759)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g---~~vp 588 (759)
|.+++|||++++++.++|.+.++ ++++|.||+||++. +.... ..+.+++|+|+++++++|+|+++ +++|
T Consensus 275 r~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~ 346 (504)
T 1t5h_X 275 RHVTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVA 346 (504)
T ss_dssp CEEEECCTTCCHHHHHHHHHHCC---SEEEEEEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCC
T ss_pred cEEEEcCCcCCHHHHHHHHHhcC---cceeeeeccccccc-ccccc----CCCCCccccCCCCCceeEEeccCCCCCcCC
Confidence 99999999999999999999987 78999999999943 22211 23567899999999999999888 9999
Q ss_pred CCceEEEEEe-cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHH
Q 004348 589 GECSGYLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESAL 648 (759)
Q Consensus 589 ~g~~GEL~I~-g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L 648 (759)
.|+.|||+|+ | |++++|||++|+.+.+.| .+|||+|||+|+ +|+||+|.|||++|
T Consensus 347 ~g~~GEl~v~gg--~~~~~GY~~~~~~t~~~f---~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 421 (504)
T 1t5h_X 347 NGEEGELIVAAS--DSAFVGYLNQPQATAEKL---QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421 (504)
T ss_dssp TTCCEEEEEECC--TTSCCCBTTCHHHHHHHE---ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHH
T ss_pred CCCcceEEEeCC--ceeeceecCCchhhhhhh---cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHH
Confidence 9999999999 7 899999999999999887 378999999998 89999999999999
Q ss_pred hcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHH
Q 004348 649 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 727 (759)
Q Consensus 649 ~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L 727 (759)
.+||+|.+|+|++.+++..++.++|||+++++...+ .++|++++++ +||.||+|+.|+++++||+|+||||||++|
T Consensus 422 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L 498 (504)
T 1t5h_X 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498 (504)
T ss_dssp TTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC---HHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHH
T ss_pred HhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC---HHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHH
Confidence 999999999999999988899999999998765444 5789999998 999999999999999999999999999999
Q ss_pred HHHHh
Q 004348 728 RKIAS 732 (759)
Q Consensus 728 ~~~~~ 732 (759)
++.+.
T Consensus 499 ~~~~~ 503 (504)
T 1t5h_X 499 VQQVS 503 (504)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98764
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=668.45 Aligned_cols=490 Identities=20% Similarity=0.223 Sum_probs=406.4
Q ss_pred HHHH-HHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYN-CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~-~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.+ +|.++++ ++ |++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~~~-~~-~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMERYA-KL-GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHH-HH-TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhhhc-cc-CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 5777 7888887 78 999999741 257899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++.+++.++|+++++++||+++... ..+......+ +....++.++....
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~------- 159 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL---------DKVITVQKTV----TTIKTIVILDSKVD------- 159 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH---------HHHHHHHHHS----TTCCEEEETTCSSC-------
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHhcCC----CCCCEEEEeCCccc-------
Confidence 999999999999999999999999999999987642 2233322222 22444554432210
Q ss_pred cCCCCccchhhhcCCCCCC-CCccccC-----C-CCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH---hCCCCC
Q 004348 360 WQDGRDIWWQDVVPKYPTK-CEVEWVD-----A-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPS 429 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~---~~l~~~ 429 (759)
......|++........ .+..... + ++++||+|||||||.||||+++|++++.+ ....... ++++++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~~~~ 236 (548)
T 2d1s_A 160 --YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTR-FSHARDPIYGNQVSPG 236 (548)
T ss_dssp --BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHH-HHHHTCTTTSCCCCTT
T ss_pred --ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHH-HHHhhchhhccCCCcc
Confidence 00112244433222111 1111222 4 89999999999999999999999995444 4444333 678899
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCC
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (759)
|++++.+|++|+.++...++.+| .|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....+++
T Consensus 237 d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~ 309 (548)
T 2d1s_A 237 TAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLS 309 (548)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCT
T ss_pred ceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccc
Confidence 99999999999998655567777 9999999853 499999999999999999999999999998654 2345789
Q ss_pred CeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccC
Q 004348 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIE 588 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp 588 (759)
+||.+++|||++++++.++|.+.++ +++++|.||+||++..++..... ..+.+++|+|+++++++|+| +++++++
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 385 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLG 385 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCC
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCC
Confidence 9999999999999999999999986 47899999999998766543221 34668999999999999999 6899999
Q ss_pred CCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 589 ~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
.|+.|||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.
T Consensus 386 ~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 461 (548)
T 2d1s_A 386 PNRRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461 (548)
T ss_dssp TTCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH
T ss_pred CCCCeEEEECC--HHHhhhhcCChHHhhhcccC--CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH
Confidence 99999999999 89999999999999888743 78999999998 899999999999999
Q ss_pred cCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCcccc-EEEEeCCCCCCCCCcccHHHHH
Q 004348 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD-KIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 650 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~-~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
+||+|.+|+|++.+++..++.++|||+++++...+ .++|+++|+++|+.|++|. .|+++++||+|++|||+|++|+
T Consensus 462 ~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~ 538 (548)
T 2d1s_A 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT---EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538 (548)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHH
T ss_pred hCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC---HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHH
Confidence 99999999999999998899999999998765444 5789999999999999999 9999999999999999999999
Q ss_pred HHHhcccCC
Q 004348 729 KIASRQLDE 737 (759)
Q Consensus 729 ~~~~~~~~~ 737 (759)
+++.+.+++
T Consensus 539 ~~~~~~i~~ 547 (548)
T 2d1s_A 539 EILKKPVAK 547 (548)
T ss_dssp HHHHSCC--
T ss_pred HHHhhhhhc
Confidence 999876553
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-75 Score=665.80 Aligned_cols=478 Identities=18% Similarity=0.233 Sum_probs=400.7
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKWAA-ETPDQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HCCCceEEEeC------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 6788999998 89999999986 6889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccC
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (759)
++++|++|.++.+++.+++++++++++|++........ . ..++..+.
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------------------~-~~~~~~~~------------ 122 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------------------P-VRIVSEDN------------ 122 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------------------S-SEEEETHH------------
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------------------c-cceechhh------------
Confidence 99999999999999999999999999999754321100 0 00110000
Q ss_pred CCCccchhhh--cCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 362 DGRDIWWQDV--VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 362 ~~~~~~~~~~--~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
+.+. ........+.....+++++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++
T Consensus 123 ------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 195 (512)
T 3fce_A 123 ------LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCL-VSFTKWAVEDFNLQTGQVFLNQAPFS 195 (512)
T ss_dssp ------HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHH-HHHHHHHHHHTTCCSSCEEEECSCTT
T ss_pred ------hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHH-HHHHHHHHHhcCCCCCCEEEEeCCcc
Confidence 0000 00011112233457899999999999999999999999995 45566666778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++ +.++.+|+.|+++++.+... .+++..+++.|+++++|++.++|+++..++.... ....++++||.+++|||
T Consensus 196 ~~~~~-~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 196 FDLSV-MDIYPSLVTGGTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGE 271 (512)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCHHH-HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCCEEEECSS
T ss_pred HhHHH-HHHHHHHhCCCEEEECCHHH-hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCccccEEEEecC
Confidence 99984 67899999999999986421 1378999999999999999999999999887654 23457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEE
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~ 596 (759)
++++++.++|.+.++ +++++|.||+||+++.++...... ......++|+|+++++++|+|++|+++|.|+.|||+
T Consensus 272 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 349 (512)
T 3fce_A 272 VLPNEVARKLIERFP--KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIV 349 (512)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEE
T ss_pred cCCHHHHHHHHHHCC--CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEE
Confidence 999999999999986 489999999999987655322111 123567899999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhHHhhhc-ccCCcEEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceE
Q 004348 597 IKSSWPGAFRTLYGDHERYETTYF-KPFPGYYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEA 657 (759)
Q Consensus 597 I~g~~~~v~~GY~~~~e~~~~~~~-~~~~g~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea 657 (759)
|+| |+++.|||++|+.+.+.|. .+.+|||+|||+|+ +|+||+|.|||++|.+||+|.+|
T Consensus 350 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a 427 (512)
T 3fce_A 350 IVG--PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGA 427 (512)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEE
T ss_pred Eec--cccChhhcCCchhhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceE
Confidence 999 9999999999999999885 23457999999987 89999999999999999999999
Q ss_pred EEEeEecCCCCeEEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 658 AVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 658 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+|++++++..++.++|+|++.++.... ..+.++|+++|+++||.||+|+.|+++++||+|++|||||++|++.+...
T Consensus 428 ~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 428 VIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred EEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 999999988889999999998765433 34568899999999999999999999999999999999999999998754
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-75 Score=676.10 Aligned_cols=490 Identities=20% Similarity=0.219 Sum_probs=387.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQVS-KRPNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-HCCCCeEEEeC------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 58899999998 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++++++++++||+++... . ....+ .....+..+....
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~---------~----~~~~~----~~~~~~~~~~~~~--------- 166 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------H----LIHNI----QFNGQVEIFEEDT--------- 166 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------H----HHTTS----CCCSEEEECCCST---------
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchh---------h----hhhhc----cccCceeeecchh---------
Confidence 99999999999999999999999999999976531 1 11111 1111222221110
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
+ .............++|++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++|
T Consensus 167 -------~----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -------I----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI-SNLKVFFENSLNVTEKDRIGQFASISF 234 (563)
T ss_dssp -------T----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHH-HHHHHHHHHTSCCCTTCEEEECSCTTS
T ss_pred -------h----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHH-HHHHHHHHHhcCCCCCCEEEEeCCccH
Confidence 0 0000111122346789999999999999999999999995 455566667789999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.++ +.++.+|+.|+++++.+... .+++..+++.|+++++|++.++|+++..|... .+++||.+++|||+
T Consensus 235 ~~~~-~~~~~~l~~G~~~v~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 235 DASV-WEMFMALLTGASLYIILKDT-INDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSA 304 (563)
T ss_dssp THHH-HHHHHHHTTTCEEEECCHHH-HTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSC
T ss_pred HHHH-HHHHHHHHCCCEEEEcChHh-hcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEec
Confidence 9884 67899999999999976422 23889999999999999999999998776432 46799999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCC-CCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++++|.+. ++++|.||+||++.+++..... ....+.+++|+|++|++++|+|++++++|.|+.|||+|+|
T Consensus 305 l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g 379 (563)
T 1amu_A 305 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 379 (563)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHhC-----CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEec
Confidence 999999988763 7899999999998765433221 1123567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcc----cCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccce
Q 004348 600 SWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAE 656 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~----~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~e 656 (759)
|++++|||++|+.+.+.|.. +.+|||+|||+|+ +|+||+|.|||++|.+||+|.+
T Consensus 380 --~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~ 457 (563)
T 1amu_A 380 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457 (563)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred --hhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 99999999999999988854 2356999999998 8999999999999999999999
Q ss_pred EEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccC
Q 004348 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLD 736 (759)
Q Consensus 657 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~ 736 (759)
|+|++.+++..++.++|||+...... .++|+++|+++||.||+|+.|+++++||+|++|||||++|++.......
T Consensus 458 a~Vv~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 532 (563)
T 1amu_A 458 TAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGM 532 (563)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC--
T ss_pred EEEEEeecCCCCeEEEEEEEeCCCCC-----HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccccccc
Confidence 99999999888899999999875432 5789999999999999999999999999999999999999876432111
Q ss_pred --CCCCCCCCCChhhHHHHHhhh
Q 004348 737 --ELGDTSTLADPGVVDQLIALA 757 (759)
Q Consensus 737 --~~~~~~~~~~p~~~~~~~~~~ 757 (759)
....+.+..+..+.+-|.+++
T Consensus 533 ~~~~~~p~~~~e~~l~~iw~~~L 555 (563)
T 1amu_A 533 RVDYEAPRNEIEETLVTIWQDVL 555 (563)
T ss_dssp -----------------------
T ss_pred ccccCCCCCHHHHHHHHHHHHHh
Confidence 111223444445555555554
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-74 Score=660.78 Aligned_cols=477 Identities=17% Similarity=0.207 Sum_probs=404.0
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|++. |+++|++|+++++|++++++++|||+++
T Consensus 3 l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTHAE-TYPQTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCeEEEcC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 6788999998 89999999976 68999999999999999999875 8889999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++++++++++||+++........ ....
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------------------~~~~------------------ 119 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------------------QQIQ------------------ 119 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------------------CSSC------------------
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------------------cccc------------------
Confidence 9999999999999999999999999999996553210000 0000
Q ss_pred CCCCccchhhhcCCC-CCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.+.+.+..... ..........+++++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++
T Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 194 (511)
T 3e7w_A 120 ----TVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANL-QSFTDWICADFPVSGGKIFLNQAPFS 194 (511)
T ss_dssp ----EEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHH-HHHHHHHHHHSTTTTTCEEEECSCTT
T ss_pred ----eecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHH-HHHHHHHHHhcCCCccceEEEeCCcc
Confidence 01111221111 1112223456889999999999999999999999995 45566666778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.+ .+.++.+|+.|+++++.+... .+++..+++.|+++++|++.++|++++.|+.... .....++++|.+++|||
T Consensus 195 ~~~~-~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 195 FDLS-VMDLYPCLQSGGTLHCVTKDA-VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHADTFMFCGE 270 (511)
T ss_dssp STHH-HHHHHHHHHTTCEEEECCHHH-HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHH-HHHHHHHHhcCCEEEEcChhh-hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcccEEEEecC
Confidence 9998 467899999999999975421 1378999999999999999999999999988754 23457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEE
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~ 596 (759)
++++++.+++.+.++ +++++|.||+||+++.++...... ......++|+|++|++++|+|++|+++|.|+.|||+
T Consensus 271 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 348 (511)
T 3e7w_A 271 VLPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIV 348 (511)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CCCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999986 489999999999987654322111 123456899999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhHHhhhcccCCc-EEEeCCeee------------------ccEeeCHHHHHHHHhcCCccceE
Q 004348 597 IKSSWPGAFRTLYGDHERYETTYFKPFPG-YYFTGDGCS------------------SGHRIGTAEVESALVSHPQCAEA 657 (759)
Q Consensus 597 I~g~~~~v~~GY~~~~e~~~~~~~~~~~g-~y~TGDl~~------------------~G~rI~~~eIE~~L~~~p~V~ea 657 (759)
|+| |++++|||++|+.+.+.|+....+ ||+|||+|+ +|+||+|.|||++|.+||+|.+|
T Consensus 349 v~g--~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a 426 (511)
T 3e7w_A 349 IAG--PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSA 426 (511)
T ss_dssp EES--TTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEE
T ss_pred Eec--CccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceE
Confidence 999 899999999999999998754333 799999987 89999999999999999999999
Q ss_pred EEEeEecCCCCeEEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 658 AVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 658 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+|++++++..++.++|+|+++++.... .++.++|+++|+++||.||+|+.|+++++||+|++|||||++|++.+...
T Consensus 427 ~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 427 VVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp EEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 999999888889999999998765433 35578999999999999999999999999999999999999999998754
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-74 Score=660.34 Aligned_cols=488 Identities=25% Similarity=0.322 Sum_probs=393.6
Q ss_pred ccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 197 GITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 197 ~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
...|++.++|+++++ +||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 21 ~~~~~~~~~l~~~~~--~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 92 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET--RAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92 (529)
T ss_dssp -CCCHHHHHHHHTGG--GTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred cceeHHHHHHHhhhc--cCCceEEEeC------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 445688999988875 9999999965 57899999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEeccCccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMTR 355 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~vi~~~~~~~~~~ 355 (759)
|+++|++++|+++.++.+++.+++++++++++|+++... ..+....... +.. ..+++.+....
T Consensus 93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~--- 156 (529)
T 2v7b_A 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV---------QNVTQALESA----EHDGCQLIVSQPRES--- 156 (529)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH---------HHHHHHHHCC-------CCEEEEECC------
T ss_pred HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh---------hHHHHHHhhc----cccCceEEEeccccc---
Confidence 999999999999999999999999999999999987642 2222222211 122 33443332110
Q ss_pred cccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEe
Q 004348 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435 (759)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~ 435 (759)
. ......|++.........+.....++|++||+|||||||.||||+++|+++...........+++.++|++++.
T Consensus 157 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~ 231 (529)
T 2v7b_A 157 --E---PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSA 231 (529)
T ss_dssp --------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEES
T ss_pred --c---cccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEe
Confidence 0 00011344443322222223345789999999999999999999999999534444444445788999999999
Q ss_pred cCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEE
Q 004348 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515 (759)
Q Consensus 436 ~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~ 515 (759)
+|++|+.++...++.+|..|+++++.+. .+++..+++.|+++++|++.++|+++..|++.... ......+||.++
T Consensus 232 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~ 306 (529)
T 2v7b_A 232 AKLFFAYGLGNGLTFPLSVGATAILMAE---RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--PARADVAIRICT 306 (529)
T ss_dssp SCTTSHHHHHHHTHHHHHHTCEEECCCS---CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC--CCGGGCCCCEEE
T ss_pred ecHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc--ccccCCceEEEE
Confidence 9999999876677889999999998742 25899999999999999999999999999876432 111123899999
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEE
Q 004348 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595 (759)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL 595 (759)
+|||++++++.++|.+.++ ++++|.||+||++.+.+..... ....+++|+|++|++++|+|++|+++|.|+.|||
T Consensus 307 ~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl 381 (529)
T 2v7b_A 307 SAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDL 381 (529)
T ss_dssp ECSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEE
T ss_pred EcCCCCCHHHHHHHHHHhC---CceeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEECCCCCCCCCCCccEE
Confidence 9999999999999999987 7899999999997655443322 2456889999999999999999999999999999
Q ss_pred EEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccce
Q 004348 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAE 656 (759)
Q Consensus 596 ~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~e 656 (759)
+|+| |+++.|||++++.+...|. +|||+|||+|+ +|+||+|.|||++|.+||+|.+
T Consensus 382 ~v~g--~~~~~gY~~~~~~t~~~f~---~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 456 (529)
T 2v7b_A 382 YIKG--PSAAVMYWNNREKSRATFL---GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLE 456 (529)
T ss_dssp EEEC--TTCCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEE
T ss_pred EEec--CCcccccCCChHHHHHhhh---cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcce
Confidence 9999 8999999999999988874 68999999988 8999999999999999999999
Q ss_pred EEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 657 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
|+|++. ++..++.++|+|++.++....+.+.++|+++|+++||.||+|+.|+++++||+|++||++|++|++
T Consensus 457 ~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 457 AAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 999999 666788899999998765434445678999999999999999999999999999999999999985
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-75 Score=719.61 Aligned_cols=548 Identities=20% Similarity=0.276 Sum_probs=325.3
Q ss_pred CcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHH
Q 004348 124 NDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203 (759)
Q Consensus 124 ~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~ 203 (759)
..-+|++++.+++|++++..+++.+++.+...+.....+ ..|...... ...+ ...+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~p------------~~~tl~ 64 (979)
T 3tsy_A 7 HHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSD----VIFRSKLPD------IYIP------------NHLSLH 64 (979)
T ss_dssp --------------------------------------C----CCBCCSSCC------CCCC------------TTSCHH
T ss_pred ccccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCCC----ceeecCCCC------CCCC------------CCCCHH
Confidence 346899999999999999999999998887776654322 222211111 0111 112689
Q ss_pred HHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCe
Q 004348 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (759)
Q Consensus 204 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav 283 (759)
++|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 65 ~~l~~~a~-~~pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 65 DYIFQNIS-EFATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp HHHTTTGG-GTTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHH-hCCCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 99999999 899999999752 2578999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCC
Q 004348 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (759)
Q Consensus 284 ~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (759)
++|++|.++.+++.++++++++++||+++..... +...... ..+ .++.++.... .. ...
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~-----~~~-~~~~~~~~~~-----~~-~~~ 198 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDK---------IKPLQND-----DGV-VIVCIDDNES-----VP-IPE 198 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTT---------SHHHHHT-----SCC-EEEECCCCTT-----SC-CCT
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHH---------HHHHhhc-----CCc-eEEEeCCccc-----cc-CCc
Confidence 9999999999999999999999999998765421 1111111 122 2344433210 00 011
Q ss_pred CccchhhhcCCCCC---CCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHH---HHhCCCCCcEEEEecC
Q 004348 364 RDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (759)
Q Consensus 364 ~~~~~~~~~~~~~~---~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~l~~~d~~l~~~~ 437 (759)
....|.+....... ..+.....++|++||+|||||||+||||+++|++++.+...... ..+++.++|++++.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 278 (979)
T 3tsy_A 199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP 278 (979)
T ss_dssp TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSC
T ss_pred ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECc
Confidence 22334444332211 22333567899999999999999999999999996544332221 1356788999999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 279 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~g 352 (979)
T 3tsy_A 279 MFHIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSG 352 (979)
T ss_dssp SSSHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEEEEEc
Confidence 99999877778899999999999864 489999999999999999999999999988754 345578999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccC---CCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceE
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSG 593 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~---~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~G 593 (759)
||++++++.++|.+.++ +++++|.||+||++.+++... ....+.+.+++|+|++|++++|+|+ +++++|.|+.|
T Consensus 353 g~~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~G 430 (979)
T 3tsy_A 353 AAPLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPG 430 (979)
T ss_dssp SCCCCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCcc
Confidence 99999999999999986 489999999999997654321 1223456788999999999999994 69999999999
Q ss_pred EEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCcc
Q 004348 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQC 654 (759)
Q Consensus 594 EL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V 654 (759)
||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|
T Consensus 431 El~i~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V 506 (979)
T 3tsy_A 431 EICIRG--HQIMKGYLNNPAATAETIDK--DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDI 506 (979)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEESCC------------------------
T ss_pred EEEEEC--CCccccccCChhhhhhhccC--CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 99999999999999988743 78999999998 89999999999999999999
Q ss_pred ceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 655 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 655 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
.+|+|++++++..++.++|||+.+++...+ .++|+++|+++||.||+|..|+++++||+|+||||||++|++.+...
T Consensus 507 ~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 507 TDVAVVAMKEEAAGEVPVAFVVKSKDSELS---EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEecccCCCcEEEEEEEECCCCCCC---HHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 999999999988889999999987654333 57899999999999999999999999999999999999999988754
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-75 Score=675.60 Aligned_cols=487 Identities=22% Similarity=0.277 Sum_probs=317.5
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 31 tl~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 31 PLTRILTVGVQ-SHPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp CTTHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEcC------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 57899999999 89999999976 789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|+++.++.+++.+++++++++++|+++.... .............. .....++..+....
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 167 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV----FSNNQFIDSLHDVN----LSPEIILMLNHQAT-------- 167 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHTT----CCCSEEEEETCCTT--------
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc----ccHHHHHHHHhhcc----cCcceEEEecCCcc--------
Confidence 999999999999999999999999999999876421 11112222222222 44555555443210
Q ss_pred CCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
...+.+...... ...+.....+++++||+|||||||+||||+++|++++ .........+++.++|++++.+|++
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 ----DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYD-YSVRASAEICGLNSNTRLLCALPAP 242 (544)
T ss_dssp ----SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred ----ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHH-HHHHHHHHHhCCCCCCeEEEecCcc
Confidence 111111111111 1112234568999999999999999999999999954 4556666778999999999999999
Q ss_pred hhchhhH-HHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 440 WITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 440 ~~~g~~~-~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
|.+++.. .++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ...++++||.+++||
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG 316 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGG 316 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEES
T ss_pred eEeecchHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcC
Confidence 9887554 68899999999999864 4899999999999999999999999999876432 233678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCC-CCceEEEECCCCcccCCCceEEEEE
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCI 597 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~-~g~~~~IvD~~g~~vp~g~~GEL~I 597 (759)
|++++++.+++.+.++ ++++|.||+||++...+... .......+++|+|+ ++++++|+|++++++|.|+.|||+|
T Consensus 317 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v 392 (544)
T 3o83_A 317 ASFPESLARQVPEVLN---CKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLAT 392 (544)
T ss_dssp SCCCHHHHTHHHHHHC---SEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHhC---CcEEeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEE
Confidence 9999999999999987 89999999999985443221 11112346899997 8999999999999999999999999
Q ss_pred ecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEE
Q 004348 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAA 658 (759)
Q Consensus 598 ~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~ 658 (759)
+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+
T Consensus 393 ~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (544)
T 3o83_A 393 RG--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAA 468 (544)
T ss_dssp EC--TTSCSCCTTCHHHHHHHBCT--TCCEEEEEEEEECTTSCEEEEEEEC-----------------------------
T ss_pred ec--CCcchhhcCChhhhhhhCCC--CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence 99 89999999999999988854 78999999998 899999999999999999999999
Q ss_pred EEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 659 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
|++++++..++.++|||+.++... ..++|++++++ +||.||+|+.|+++++||+|+||||||++|++++..
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 469 LVAIVDEQFGEKSCAFIVSRNPEL----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccCCCCCceEEEEEEeCCCCC----CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 999999888999999999876322 25678889988 799999999999999999999999999999998763
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-75 Score=675.69 Aligned_cols=467 Identities=22% Similarity=0.282 Sum_probs=310.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~a~-~~pd~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQAA-RAPDAVALLHE------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCCeEEECC------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 68999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++++++++++||+++...... .....++ ..+..
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~-~~~~~--------- 198 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------------TGTTTLY-VEDEA--------- 198 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------------CSSEEEE-CCC-----------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------------cCCccee-eeccc---------
Confidence 99999999999999999999999999999987643210 1111111 11100
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
..............++|++||+|||||||.||||+++|++++ +.... ...+++.++|++++.+|++|
T Consensus 199 -----------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~~~-~~~~~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -----------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALT-GTYLG-QDYAGFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ----------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHH-HHHSS-CCSSCCSTTCEEEECSCTTS
T ss_pred -----------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHH-HHHHh-hhhcCCCCCCEEEEecCccH
Confidence 000011112234578999999999999999999999999954 33322 34467889999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
+.+ .+.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|++++.|++.... ++++||.+++|||+
T Consensus 266 ~~~-~~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 266 DAF-GLELFGALLFGARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEP 337 (570)
T ss_dssp STH-HHHHHHHHTTTCEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----GGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----hCCCceEEEEeccc
Confidence 776 56889999999999998653 35899999999999999999999999999876432 57899999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCC--CCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEe
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
+++++.+++.+.++ +++++|.||+||++++.+.... ........++|+|++|++++|+|+++++++.|+.|||+|+
T Consensus 338 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~ 415 (570)
T 4gr5_A 338 ASVPHVAKARRDHP--ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVA 415 (570)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHhCC--CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEe
Confidence 99999999999886 4899999999999876553321 1122345679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhccc------CCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCc
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKP------FPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQ 653 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~------~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~ 653 (759)
| |++++|||++|+.+.+.|..+ .+|||+|||+|+ +|+||+|.|||++|.+||+
T Consensus 416 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~ 493 (570)
T 4gr5_A 416 G--AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPA 493 (570)
T ss_dssp E--TTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------
T ss_pred e--cccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCC
Confidence 9 999999999999999988642 247999999998 8999999999999999999
Q ss_pred cceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHH
Q 004348 654 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731 (759)
Q Consensus 654 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~ 731 (759)
|.+|+|++.+++..++.++|||+.+++.. +...++|+++|+++||.||+|..|+++++||+|++|||||++|++..
T Consensus 494 V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 494 VRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cceEEEEEeeCCCCCeEEEEEEEecCCCC--CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 99999999998888899999999865432 11267899999999999999999999999999999999999998753
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-75 Score=670.54 Aligned_cols=488 Identities=22% Similarity=0.265 Sum_probs=367.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 19 NLWDFLERAAA-LFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CTHHHHHHHHH-HSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCceEEEEecC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 57889999998 8999999996421 23688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++|+++++++||+++... ..+......+ +.+..+++++....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-------- 154 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVEAIRGEL----KTVQHFVVMDEKAP-------- 154 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHGGGC----SSCCEEEESSSCCC--------
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH---------HHHHHHHhhC----CCccEEEEecCCCC--------
Confidence 99999999999999999999999999999986532 2222222111 34555555443210
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHH-HHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~-~~~~~~l~~~d~~l~~~~l~ 439 (759)
.....|.+.+...... ....++++++|+|||||||.||||+++|++++.+.... ....++++++|++++.+|++
T Consensus 155 --~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 229 (541)
T 1v25_A 155 --EGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229 (541)
T ss_dssp --TTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTT
T ss_pred --cccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccch
Confidence 0123354444332221 23567899999999999999999999999965443321 22356788999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++ ..++.+|+.|+++++.+. .+++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||
T Consensus 230 h~~~~-~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 230 HVNAW-CLPYAATLVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGS 303 (541)
T ss_dssp SHHHH-THHHHHHHHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCCEEEECSS
T ss_pred hhhHH-HHHHHHHhcCceEEeeCC---CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhh--ccCCcchhccEEEECCC
Confidence 99885 467889999999999753 2599999999999999999999999999987643 12347899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC----C-----CCCCCCcCCCCCCceEEEECCCCcccCC-
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----W-----PQKPGSATFPFFGVQPVIVDEKGVEIEG- 589 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~----~-----~~~~~~iG~p~~g~~~~IvD~~g~~vp~- 589 (759)
+++++++++| +.++ ++++|.||+||++.+++...... . ....+++|+|++|++++|+|++++++|.
T Consensus 304 ~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~ 379 (541)
T 1v25_A 304 AAPRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 379 (541)
T ss_dssp CCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred CCCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence 9999999999 6666 88999999999987665432210 0 0134789999999999999999999984
Q ss_pred -CceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 590 -ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 590 -g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
++.|||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.
T Consensus 380 ~~~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 455 (541)
T 1v25_A 380 GKALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 455 (541)
T ss_dssp SCCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC--
T ss_pred CCcceEEEEeC--cchhccccCChhhhhhhccC--CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH
Confidence 3689999999 89999999999999988753 78999999998 899999999999999
Q ss_pred cCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCccccEEEEeCCCCCCCCCcccHHHHH
Q 004348 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728 (759)
Q Consensus 650 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~ 728 (759)
+||+|.+|+|++++++..++.++|||+++ +...+ .++|++++++ +||.||+|+.|+++++||+|+||||+|++|+
T Consensus 456 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~ 531 (541)
T 1v25_A 456 GHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT---PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 531 (541)
T ss_dssp --------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC--------------CCTTHH
T ss_pred hCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC---HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHH
Confidence 99999999999999998899999999986 22222 4678899999 8999999999999999999999999999999
Q ss_pred HHHhccc
Q 004348 729 KIASRQL 735 (759)
Q Consensus 729 ~~~~~~~ 735 (759)
+.+...+
T Consensus 532 ~~~~~~~ 538 (541)
T 1v25_A 532 EQYKNYY 538 (541)
T ss_dssp HHSTTSS
T ss_pred HHHHHhh
Confidence 9886543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-75 Score=664.95 Aligned_cols=474 Identities=22% Similarity=0.274 Sum_probs=309.2
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 7 tl~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 7 TLADVYRRNAA-LFPDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCceEEEEC------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 58899999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|++.... ..+......+ +.+..++.++...
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 137 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR---------DIVAGVLPSL----GGVKKAYAIGDGS--------- 137 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH---------HHHHHHGGGC----SSCCEEEESSCCC---------
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh---------hhHHhhhccc----CCceEEEEcCCCC---------
Confidence 99999999999999999999999999999987642 2212222211 3455555543311
Q ss_pred CCCCccchhhhcC-CCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVP-KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
..|.+... ......+.....++|++||+|||||||.||||+++|+++ .+...+....+++.++|++++.+|++
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 211 (509)
T 3ivr_A 138 -----GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNL-LIAQSSLVDAWRLTEADVNLGMLPLF 211 (509)
T ss_dssp -----SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHH-HHHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred -----cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHH-HHHHHHHHHhhCCCCCcEEEEeCCCc
Confidence 11222221 111222334567899999999999999999999999995 45566667779999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++. .++.+++.|+++++.. .+++..+++.|+++++|++.++|+++..|++... ..++++||.++.+|+
T Consensus 212 ~~~g~~-~~~~~~~~~g~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 212 HVTGLG-LMLTLQQAGGASVIAA----KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDT 282 (509)
T ss_dssp SHHHHH-HHHHHHHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC----GGGGTTCCEEEEECC
T ss_pred chhHHH-HHHHHHHhCCcEEEec----ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc----ccchhhhheecccCC
Confidence 999864 4555556666666654 2599999999999999999999999999988752 346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
+ ++.+++.+.++ +++++|.||+||++++++..... ....++|+|++|++++|+|++++++|.|+.|||+|+|
T Consensus 283 ~---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g 354 (509)
T 3ivr_A 283 P---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG 354 (509)
T ss_dssp H---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEES
T ss_pred h---HHHHHHHHhcC--CCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEec
Confidence 7 88888998885 48999999999999766543322 2334599999999999999999999999999999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee---------------------ccEeeCHHHHHHHHhcCCccceEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS---------------------SGHRIGTAEVESALVSHPQCAEAA 658 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~---------------------~G~rI~~~eIE~~L~~~p~V~ea~ 658 (759)
|++++|||++|+.+.+.|. +|||+|||+|+ +|+||+|.|||++|.+||+|.+|+
T Consensus 355 --~~~~~gY~~~~~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~ 429 (509)
T 3ivr_A 355 --PTVFKGYWNNAAATQHAFR---NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429 (509)
T ss_dssp --TTSCCEETTCHHHHHHHTG---GGSEEEEEEEEECTTSCEEEEEEC--------------------------------
T ss_pred --CCccccccCCHHHhHHHhh---cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEE
Confidence 8999999999999998873 78999999998 799999999999999999999999
Q ss_pred EEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 659 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
|++++++..++.++++|+++++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+...
T Consensus 430 vv~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 430 VIGVPDPQWSEAIKAVCVCKPGESIA---ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccccccCcEEEEEEEeCCCCCCC---HHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 99999988899999999987765433 57899999999999999999999999999999999999999988754
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-73 Score=655.60 Aligned_cols=479 Identities=18% Similarity=0.218 Sum_probs=390.3
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+.+. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 5 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 5 DMIDSIEQFAQ-TQADFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HCCCCcceecC------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 57889999998 89999999976 688999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++........+. ++.+...
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~---------------------~~~~~~~---------- 126 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS---------------------LVSLSEI---------- 126 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSE---------------------EEEHHHH----------
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccCc---------------------ccchhhh----------
Confidence 999999999999999999999999999999876532211110 1100000
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH--hCCCCCcEEEEecCc
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADC 438 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~l~~~d~~l~~~~l 438 (759)
.................++|+++|+|||||||.||||+++|++++. ...+.... +++.+++++++..++
T Consensus 127 --------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (521)
T 3l8c_A 127 --------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLS-FTNWMIEDAAFDVPKQPQMLAQPPY 197 (521)
T ss_dssp --------HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHH-HHHHHHHCTTTCCCSSCEEECCSCT
T ss_pred --------hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHH-HHHHHhhccccCCCCCCeEEecCCc
Confidence 0000000111122345689999999999999999999999999544 34444433 678889999999999
Q ss_pred chhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeC
Q 004348 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 439 ~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gG 518 (759)
+|+.+ .+.++.+|+.|+++++.+... ..++..+++.|+++++|++.++|+++..++.... ....++++||.+++||
T Consensus 198 ~~~~~-~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 198 SFDLS-VMYWAPTLALGGTLFALPKEL-VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALTHFYFDG 273 (521)
T ss_dssp TSGGG-HHHHHHHHHTTCEEEECCGGG-TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECS
T ss_pred cHHHH-HHHHHHHHhcCCEEEEcCHHH-hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccceEEEEec
Confidence 99988 467888999999999986532 2489999999999999999999999999887654 2345789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC---CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEE
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL 595 (759)
|++++++.+++.+.++ +++++|.||+||+++.++...... .....+++|+|++|++++|+|++|++++.|+.|||
T Consensus 274 ~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl 351 (521)
T 3l8c_A 274 EELTVSTARKLFERFP--SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEI 351 (521)
T ss_dssp SCCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEE
T ss_pred ccCCHHHHHHHHHHCC--CceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEE
Confidence 9999999999999985 489999999999987654321111 11345689999999999999999999999999999
Q ss_pred EEecCCCcccccccCChhhHHhhhcc-cCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccc
Q 004348 596 CIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCA 655 (759)
Q Consensus 596 ~I~g~~~~v~~GY~~~~e~~~~~~~~-~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ 655 (759)
+|+| |++++|||++|+.+.+.|+. +.+|||+|||+|+ +|+||+|.|||++|.+||+|.
T Consensus 352 ~v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~ 429 (521)
T 3l8c_A 352 IVTG--PAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVA 429 (521)
T ss_dssp EEES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEE
T ss_pred Eecc--cccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcc
Confidence 9999 89999999999999999863 3457999999998 899999999999999999999
Q ss_pred eEEEEeEecC-CCCeEEEEEEEEcCCCCC----cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHH
Q 004348 656 EAAVVGVEHE-VKGQGIYAFVTLVEGVPY----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 730 (759)
Q Consensus 656 ea~Vv~~~~~-~~~~~lva~Vv~~~~~~~----~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~ 730 (759)
+|+|++.++. ..++.++|||+++++... ..++.++|+++|+++||.||+|..|+++++||+|++|||||++|++.
T Consensus 430 ~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~ 509 (521)
T 3l8c_A 430 SAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINE 509 (521)
T ss_dssp EEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHH
T ss_pred eEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhh
Confidence 9999988754 346889999999876431 12457899999999999999999999999999999999999999998
Q ss_pred Hhcc
Q 004348 731 ASRQ 734 (759)
Q Consensus 731 ~~~~ 734 (759)
+..+
T Consensus 510 ~~~~ 513 (521)
T 3l8c_A 510 VNNR 513 (521)
T ss_dssp TC--
T ss_pred hhcC
Confidence 8754
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-74 Score=668.51 Aligned_cols=491 Identities=18% Similarity=0.224 Sum_probs=314.1
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|.++++ ++||++|++...+. ..++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~a~-~~p~~~a~~a~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKAMK-RYALVPGTIAFTDA-HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHHHH-HHHTSTTCEEEEET-TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCceEEEeeec-CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 68899999998 89999987622110 22578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|+++... ..+......+ +.+..+++++....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-------- 157 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNVQKKL----PIIQKIIIMDSKTD-------- 157 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHHHHC----TTCCEEEETTCSSC--------
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHHhhC----CCcceEEEEcCCcc--------
Confidence 99999999999999999999999999999987642 3333333333 45666666543321
Q ss_pred CCCCccchhhhcCCCC-------CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHH---hCCCCCc
Q 004348 361 QDGRDIWWQDVVPKYP-------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPSD 430 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~---~~l~~~d 430 (759)
......+.+.+.... ...+.....+++++||+|||||||.||||+++|++++.+. ...... +++.++|
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~-~~~~~~~~~~~~~~~~ 235 (550)
T 3rix_A 158 -YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF-SHARDPIFGNQIIPDT 235 (550)
T ss_dssp -BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHH-HHHTCTTTSCCCCTTC
T ss_pred -ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHH-HHhhhhhccccCCCCc
Confidence 001122222221100 1111122345789999999999999999999999955443 333322 4678899
Q ss_pred EEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCC
Q 004348 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (759)
Q Consensus 431 ~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (759)
++++.+|++|+.++ +.++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++
T Consensus 236 ~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~ 308 (550)
T 3rix_A 236 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSN 308 (550)
T ss_dssp EEEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTT
T ss_pred EEEEechHHHHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCccc
Confidence 99999999999985 678889999999999854 489999999999999999999999999998754 34567899
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCC
Q 004348 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEG 589 (759)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~ 589 (759)
||.+++|||++++++.++|.+.++. ..++|.||+||+++.++..... ..+.+++|+|+++++++|+| +++++++.
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~ 384 (550)
T 3rix_A 309 LHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGV 384 (550)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCT
T ss_pred ccEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCC
Confidence 9999999999999999999999983 3589999999999876544332 34678899999999999999 47999999
Q ss_pred CceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhc
Q 004348 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVS 650 (759)
Q Consensus 590 g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~ 650 (759)
|+.|||+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+
T Consensus 385 g~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 385 NQRGELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp TCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred CCCeEEEEeC--CCcchhhcCChhhhhhhcCC--CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 9999999999 89999999999999887643 78999999998 8999999999999999
Q ss_pred CCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCcc-ccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 651 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 651 ~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~v-P~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
||+|.+|+|++++++..++.++++|+++++...+ .++|+++++++|++|+. |..|+++++||+|+||||||++|++
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~ 537 (550)
T 3rix_A 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---EKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIRE 537 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEeecCCCCceEEEEEEecCCCCCC---HHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHH
Confidence 9999999999999998899999999988765433 57899999999998854 5579999999999999999999999
Q ss_pred HHhcc
Q 004348 730 IASRQ 734 (759)
Q Consensus 730 ~~~~~ 734 (759)
++...
T Consensus 538 ~~~~~ 542 (550)
T 3rix_A 538 ILIKA 542 (550)
T ss_dssp -----
T ss_pred HHHhh
Confidence 98754
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-73 Score=652.26 Aligned_cols=456 Identities=21% Similarity=0.306 Sum_probs=368.2
Q ss_pred HHHHHHhhcccccCCC-eEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++.++|+++++ ++|+ ++|+++. ++++||+||+++++++|++|+ .|++|+|+++|++++++++|||++
T Consensus 23 tl~~~l~~~a~-~~p~d~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 23 SLFPALSPAPT-GAPADRPALRFG------ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp -CCTTTSSCCC-SGGGGSEEEEET------TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-hCCCCCeEEEEC------CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 56788888888 6776 9999986 789999999999999998875 388999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++||+|.++.+++.+++++++++++|++...... . .. ..+.. +.++..
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-------~-------~~----~~~~~-~~~~~~--------- 142 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-------P-------AL----GALER-VDVDVR--------- 142 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-------G-------GG----TTSEE-EECCTT---------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-------h-------hh----ccccc-cccccc---------
Confidence 99999999999999999999999999999997653110 0 00 11111 111100
Q ss_pred cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.....+.....++|++||+|||||||+||||+++|+++ .+........+++.++|++++.+|++
T Consensus 143 ---------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 143 ---------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRAL-ATTLDALADAWQWTGEDVLVQGLPLF 206 (505)
T ss_dssp ---------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHH-HHHHHHHHHHHTCCTTCEEEECCCTT
T ss_pred ---------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHH-HHHHHHHHHHhCCCCCcEEEEeccHH
Confidence 00111223456889999999999999999999999994 55566667778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc-ccccCCCCCeeEEEEeC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLGSVG 518 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~-~~~~~~l~sLr~v~~gG 518 (759)
|..++++.++.+|+.|+++++.+. +++..+++.+ ++++|+++++|+++..|++.... .....+++++|.+++||
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg 281 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGS 281 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECS
T ss_pred HHHHHHHHHHHHHhcCCEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECC
Confidence 999887789999999999999754 4899999999 88999999999999999874321 11223567899999999
Q ss_pred CCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCC---CceEEE
Q 004348 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG---ECSGYL 595 (759)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~---g~~GEL 595 (759)
|++++++.+++.+.++ ++++|.||+||++..++..... ....+++|+|++|++++|+|+++++++. |+.|||
T Consensus 282 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl 356 (505)
T 3nyq_A 282 AALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEI 356 (505)
T ss_dssp SCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEE
T ss_pred CCCCHHHHHHHHHhcC---CeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEE
Confidence 9999999999999987 7899999999998765543322 3456889999999999999999999886 899999
Q ss_pred EEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee--------------------ccEeeCHHHHHHHHhcCCccc
Q 004348 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS--------------------SGHRIGTAEVESALVSHPQCA 655 (759)
Q Consensus 596 ~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~--------------------~G~rI~~~eIE~~L~~~p~V~ 655 (759)
+|+| |++++|||++|+.+.+.|.. +|||+|||+|+ +|+||+|.|||++|.+||+|.
T Consensus 357 ~v~g--~~v~~GY~~~~~~t~~~f~~--~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~ 432 (505)
T 3nyq_A 357 QVRG--PNLFTEYLNRPDATAAAFTE--DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVR 432 (505)
T ss_dssp EEES--TTSCCEETTCHHHHHHTBCT--TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEE
T ss_pred EEec--CchhhhhCCChhHhhhhhcC--CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCcc
Confidence 9999 99999999999999998864 78999999998 899999999999999999999
Q ss_pred eEEEEeEecCCCCeEEEEEEEEcCCC-CCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 656 EAAVVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 656 ea~Vv~~~~~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
+|+|++.+++..++.++|||++.++. ..+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 433 ~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 433 EAAVTGEPDPDLGERIVAWIVPADPAAPPA---LGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSTTSCCC---HHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred EEEEEeeECCCCCcEEEEEEEECCCCCCCC---HHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999999998899999999997643 222 578999999999999999999999999999999999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-71 Score=635.49 Aligned_cols=475 Identities=19% Similarity=0.243 Sum_probs=364.2
Q ss_pred HHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhC
Q 004348 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (759)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaG 281 (759)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQAQ-QNGHHIAITDG------QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHHHH-HHTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCceEEEeC------CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 5577888998 89999999976 68999999999999999999987 89999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCccc-chHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 282 av~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
++++|+++.++.+++.+++++++++++|++.......... .+... ..... ........ ....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~-----~~~~ 135 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI-EFAGR-----------DITTNGLL-----DNTM 135 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc-eeeee-----------eccccccc-----cccc
Confidence 9999999999999999999999999999987654322111 00000 00000 00000000 0000
Q ss_pred CCCCccchhhhcCCCC-CCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcc
Q 004348 361 QDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~ 439 (759)
.......+........ .........++|++||+|||||||.||||+++|++++ .........+++.++|++++.+|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~ 214 (501)
T 3ipl_A 136 GIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY-ASAIGCKESLGFDRDTNWLSVLPIY 214 (501)
T ss_dssp --------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHH-HHHHHHHHHTCCCTTCEEEECSCTT
T ss_pred ccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHH-HHHHHHHHhhCCCccCEEEEeCcHH
Confidence 0000000000110000 0011224578999999999999999999999999954 4455666778999999999999999
Q ss_pred hhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 440 ~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
|+.++ ..++.+|+.|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ...+||.+++|||
T Consensus 215 ~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 215 HISGL-SVLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-----EPYNLQKILLGGA 284 (501)
T ss_dssp SHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC-----SCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC-----CcCcccEEEEeCC
Confidence 99986 458899999999999864 4999999999999999999999999999887542 1238999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
++++++.+++.+ ++ ++++|.||+||+++..+.........+.+++|+|+++++++|+|++ .|..|||+|+|
T Consensus 285 ~l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g 355 (501)
T 3ipl_A 285 KLSATMIETALQ-YN---LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKG 355 (501)
T ss_dssp CCCHHHHHHHHH-TT---CCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEES
T ss_pred CCCHHHHHHHHH-hC---CCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEec
Confidence 999999999987 44 8899999999998755433222122356789999999999999986 45679999999
Q ss_pred CCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEE
Q 004348 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVV 660 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv 660 (759)
|++++|||++++.+.. | .+|||+|||+|+ +|+||+|.|||++|.+||+|.+|+|+
T Consensus 356 --~~~~~gY~~~~~~t~~--~--~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv 429 (501)
T 3ipl_A 356 --ANVMNGYLYPTDLTGT--F--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCV 429 (501)
T ss_dssp --TTSCSCCSBSTTCCCS--E--ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEE
T ss_pred --cchhhhhCcChhhcch--h--cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 8999999999988876 3 378999999998 89999999999999999999999999
Q ss_pred eEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 661 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 661 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+.+++..++.++++|+...... .++|+++|+++||.||+|+.|+++++||+|+||||||++|++....+
T Consensus 430 ~~~~~~~g~~~~a~v~~~~~~~-----~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 430 GHPDDTWGQVPKLYFVSESDIS-----KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEecccCCceEEEEEEeCCCCC-----HHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 9999988999999999754432 57899999999999999999999999999999999999999887643
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-70 Score=633.95 Aligned_cols=492 Identities=17% Similarity=0.162 Sum_probs=389.4
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
++.++|+++++ .+||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLRAL-HSPNKKSCTFLNK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHHHH-HCTTSEEEEEEET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-hCCCCeEEEEEcC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 58899999998 8999999998642 23689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC---CHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHH-HHHhhcCCCccEEEEeccCcccccc
Q 004348 281 GAVHSVVFAGF---SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-DECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 281 Gav~vpldp~~---~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|++++|++|.+ +.+++.+++++++++++|++.... ..+.... ... +....+..+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~-------- 147 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHI---------KKFTADELNTN----PKFLKIPAIA-------- 147 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHH---------HHHCC-----C----CEETTEEEEE--------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHH---------HHHHHhhhhhc----ccccccceee--------
Confidence 99999999998 457899999999999999875421 1000000 000 1111111110
Q ss_pred ccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEec
Q 004348 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~ 436 (759)
+++...............++|++||+|||||||.||||+++|++++ +...+....+++.++|++++.+
T Consensus 148 -----------~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~ 215 (590)
T 3kxw_A 148 -----------LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLL-DNLNKIFTSFHMNDETIIFSWL 215 (590)
T ss_dssp -----------GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECS
T ss_pred -----------chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHH-HHHHHHHHhhCCCCcCeEEEec
Confidence 0000000011112234578999999999999999999999999954 4455666778999999999999
Q ss_pred CcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCc-ccccCCCCCeeEEE
Q 004348 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLG 515 (759)
Q Consensus 437 ~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~-~~~~~~l~sLr~v~ 515 (759)
|++|++++...++.+|+.|+++++.+......++..+++.|+++++|++.++|+++..|++.... .....++++||.++
T Consensus 216 p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 295 (590)
T 3kxw_A 216 PPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAF 295 (590)
T ss_dssp CTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEE
T ss_pred CCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHh
Confidence 99999997666889999999999975321111688999999999999999999999998876332 23456789999999
Q ss_pred EeCCCCCHHHHHHHHHHhCC---CCccEeeeeccccccceecccCCC-------------------------CCCCCCCC
Q 004348 516 SVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPG-------------------------AWPQKPGS 567 (759)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~---~~~~l~n~YG~TE~~~~~~~~~~~-------------------------~~~~~~~~ 567 (759)
+|||+++++++++|.+.++. ++++++|.||+||++.+++..... ......++
T Consensus 296 ~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (590)
T 3kxw_A 296 NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVS 375 (590)
T ss_dssp ECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEEC
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEec
Confidence 99999999999999998842 235799999999999876543211 01123468
Q ss_pred cCCCCCCceEEEECCC-CcccCCCceEEEEEecCCCcccccccCChhhHHhhhccc----CCc--EEEeCCeee------
Q 004348 568 ATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPG--YYFTGDGCS------ 634 (759)
Q Consensus 568 iG~p~~g~~~~IvD~~-g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~----~~g--~y~TGDl~~------ 634 (759)
+|+|+++ ++|+|++ ++++|.|+.|||+|+| |++++|||++|+.+.+.|... .+| ||+|||+|+
T Consensus 376 ~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l 451 (590)
T 3kxw_A 376 SGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENEL 451 (590)
T ss_dssp CCEESSE--EEEECTTTCCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEE
T ss_pred cCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEE
Confidence 8999998 8889986 8999999999999999 899999999999999988641 124 999999998
Q ss_pred ------------ccEeeCHHHHHHHH-hcCCccc--eEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhc
Q 004348 635 ------------SGHRIGTAEVESAL-VSHPQCA--EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 699 (759)
Q Consensus 635 ------------~G~rI~~~eIE~~L-~~~p~V~--ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~L 699 (759)
+|+||+|.|||++| ..||.|. +|+|++++++. ++.++++|+++++... +...++|+++|+++|
T Consensus 452 ~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 452 YVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD-DVAQDNLFNEIFELV 529 (590)
T ss_dssp EEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC-HHHHHHHHHHHHHHH
T ss_pred EEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc-chhHHHHHHHHHHHH
Confidence 89999999999999 8899999 89999998875 7889999998876422 233567777787777
Q ss_pred CC-Ccccc-EEEEe--CCCCCCCCCcccHHHHHHHHhcc
Q 004348 700 GA-FAAPD-KIHWA--PGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 700 p~-~~vP~-~iv~v--~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
+. +++|. .++++ ++||+|++|||||++|++++...
T Consensus 530 ~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 530 YENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp HHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 74 67775 45544 79999999999999999998754
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-71 Score=639.54 Aligned_cols=495 Identities=16% Similarity=0.121 Sum_probs=295.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCC----CCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAND----PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~----~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA 276 (759)
++.++|+++++ ++||++|+++.+.. .+..+++||+||+++++++|++|++.|+ +||+|+|+++|++++++++||
T Consensus 21 tl~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA 98 (562)
T 3ite_A 21 PPSHYIETWAK-THPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVG 98 (562)
T ss_dssp CTTHHHHHHHH-HCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHH
Confidence 46789999999 89999999986421 1224789999999999999999999999 799999999999999999999
Q ss_pred HHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccc
Q 004348 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (759)
Q Consensus 277 ~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (759)
|+++|++++|++|.++.+++.+++++++++++|+++........ .....++...
T Consensus 99 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~~-------- 152 (562)
T 3ite_A 99 IMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------------------PPETKVLDTK-------- 152 (562)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------------------CTTCEEEETT--------
T ss_pred HHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------------------Cccceeeccc--------
Confidence 99999999999999999999999999999999998664321100 0111111110
Q ss_pred ccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHH-------HhCCCCC
Q 004348 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-------AFDYKPS 429 (759)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~-------~~~l~~~ 429 (759)
...+.+.+.............+++++||+|||||||.||||+++|++++......... .+.+...
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (562)
T 3ite_A 153 --------NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGV 224 (562)
T ss_dssp --------CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTT
T ss_pred --------chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcC
Confidence 0111111111111122233457889999999999999999999999965443322211 2457888
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCC
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (759)
+++++..++.|+.+ ...++.++..|+++++.+.. ..++.+++.++++++|++.++|++++.+.... .+++
T Consensus 225 ~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~------~~~~ 294 (562)
T 3ite_A 225 GKFLCLASRAFDVH-IGEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP------EDAP 294 (562)
T ss_dssp CEEECCSCTTSTHH-HHHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG------GGST
T ss_pred ceEEEecCchhhhh-HHHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc------cccC
Confidence 99999999999887 56788999999999986431 23577889999999999999999988774332 3678
Q ss_pred CeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccC
Q 004348 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIE 588 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp 588 (759)
+||.+++|||++++++.++|.+.++ ++++|.||+||++..++...... ....+++|+|+++++++|+|+ .++++|
T Consensus 295 ~lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~ 370 (562)
T 3ite_A 295 HLVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVK 370 (562)
T ss_dssp TCCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCC
T ss_pred ceEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCC
Confidence 9999999999999999999988665 89999999999987554432211 245678999999999999996 678899
Q ss_pred CCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHh
Q 004348 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALV 649 (759)
Q Consensus 589 ~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~ 649 (759)
.|+.|||+|+| |++++|||++|+.+...+ .+.++||+|||+|+ +|+||+|.|||++|.
T Consensus 371 ~g~~GEl~v~g--~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~ 447 (562)
T 3ite_A 371 KGMAGELVIEG--SLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR 447 (562)
T ss_dssp TTSCEEEEEES--TTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEEEC---------------------
T ss_pred CCCceEEEEec--cccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH
Confidence 99999999999 899999999998776443 22334999999998 899999999999999
Q ss_pred cC-CccceEEEEeEecCCCCeEEEEEEEEcCCCCCc----------HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCC-
Q 004348 650 SH-PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT- 717 (759)
Q Consensus 650 ~~-p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~----------~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T- 717 (759)
+| |.|.+++|++.+++..++..+++++...+.... +.+.++|+++|+++||.||+|+.|+++++||+|
T Consensus 448 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~ 527 (562)
T 3ite_A 448 SLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRD 527 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCC
Confidence 98 888999999888877666655555543332211 123468999999999999999999999999998
Q ss_pred CCCcccHHHHHHHHhccc--CCCCCCCCCCChh
Q 004348 718 RSGKIMRRILRKIASRQL--DELGDTSTLADPG 748 (759)
Q Consensus 718 ~~GKvdR~~L~~~~~~~~--~~~~~~~~~~~p~ 748 (759)
++|||||++|++++.... +-..+++++.||.
T Consensus 528 ~~GKi~r~~L~~~~~~~~~~~~~~~~s~~~~~p 560 (562)
T 3ite_A 528 TSAKTDAKALEHMFHTLSLGELFGESSSLVNKP 560 (562)
T ss_dssp ---------------------------------
T ss_pred CCCcchHHHHHHHHhccCHHHHhccCccccCCC
Confidence 899999999999987542 1234566776653
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-58 Score=520.58 Aligned_cols=395 Identities=19% Similarity=0.196 Sum_probs=305.6
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcC---CCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~ 277 (759)
++.++|+++++ ++||++|+++.+. ..+..+++||+||+++++++|++|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~a~-~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRACAR-LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 68899999999 8999999998752 11234899999999999999999999996 9999999999999999999999
Q ss_pred HHhCCeEEecCC---CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccc
Q 004348 278 ARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (759)
Q Consensus 278 ~kaGav~vpldp---~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (759)
+++|++++||++ .++.+++.++|+++++++||+++... ..+.+...... ......++.++...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--- 168 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRP--GESPPSIIEVDLLD--- 168 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC--------CCEEEEGGGSC---
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccc--cccccceeEecccc---
Confidence 999999999999 88999999999999999999987642 11111111100 00111222222110
Q ss_pred ccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCC------
Q 004348 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 428 (759)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~------ 428 (759)
.......+.....+++++||+|||||||+||||+++|++++. ........+.+.+
T Consensus 169 ------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~~~ 229 (480)
T 3t5a_A 169 ------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRV-NFEQLMSGYFADTDGIPPP 229 (480)
T ss_dssp ------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHH-HHHHHHHHHCTTTTTCCCT
T ss_pred ------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHH-HHHHHHHHhccccccCCCC
Confidence 011111223345788999999999999999999999999544 4555556677777
Q ss_pred CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcC--CcccccC
Q 004348 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG--NEYVTRY 506 (759)
Q Consensus 429 ~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~--~~~~~~~ 506 (759)
+|++++.+|++|+.++.+.++.+|+.|+++++.+.....+++..+++.|+++++| +.++|+++..|+... .......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 9999999999999998788999999999999975321112789999999999999 788888887776531 1123456
Q ss_pred CCCCeeEEEEeCCCCCHHHHHHHHHHhCC---CCccEeeeeccccccceecccCCCCC----------------------
Q 004348 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW---------------------- 561 (759)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~l~n~YG~TE~~~~~~~~~~~~~---------------------- 561 (759)
++++||.+++|||+++++++++|.+.++. ++++++|.||+||++..++.......
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 88999999999999999999999999852 34689999999999987665432210
Q ss_pred -CCCCCCcCCCCCCceEEEECCC-CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcc---------cCCcEEEeC
Q 004348 562 -PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTG 630 (759)
Q Consensus 562 -~~~~~~iG~p~~g~~~~IvD~~-g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~---------~~~g~y~TG 630 (759)
....+++|+|++ ++++|+|++ ++++|.|+.|||+|+| |++++|||++|+.+.+.|.. +.+|||+||
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHG--DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEES--TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeC--CccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 123458999999 999999976 7999999999999999 89999999999999999841 145699999
Q ss_pred Ceee
Q 004348 631 DGCS 634 (759)
Q Consensus 631 Dl~~ 634 (759)
|+|+
T Consensus 466 Dlg~ 469 (480)
T 3t5a_A 466 DSGF 469 (480)
T ss_dssp EEEE
T ss_pred ceee
Confidence 9998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=431.15 Aligned_cols=297 Identities=19% Similarity=0.203 Sum_probs=250.6
Q ss_pred CCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCC
Q 004348 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAP 465 (759)
Q Consensus 386 ~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~ 465 (759)
.+++|||+|||||||+||||+++|+++ .+........++++++|++++.+|++|++|+ ..++.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQL-AASAAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHH-HHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHH-HHHHHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 478999999999999999999999995 4556667778999999999999999999985 5688899999999998643
Q ss_pred CCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeec
Q 004348 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (759)
Q Consensus 466 ~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG 545 (759)
.+ .++.|+++++|++.++|++++.|++.... ..++++||.+++|||++++++.+++.+ ++ ++++|.||
T Consensus 113 --~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~---~~~~~~YG 180 (358)
T 4gs5_A 113 --AN---PLAGLDHADFDFVAMVPMQLQSILENSAT---SGQVDRLGKVLLGGAPVNHALAMQISD-LA---MPVYQSYG 180 (358)
T ss_dssp --SC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT---GGGGGGGCSEEECSSCCCHHHHHHHHT-CS---SCEEEEEE
T ss_pred --cc---HHHHHHHhCCeEEEcChHHHHHhhccccc---cccCCcceEEEEcccCCCchheecccc-cC---ceEEeccc
Confidence 12 35678999999999999999999987542 346899999999999999999999876 34 88999999
Q ss_pred cccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCc
Q 004348 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (759)
Q Consensus 546 ~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g 625 (759)
+||++..++..... ....+++|.|+||+.+.+.+ .|||+++|++ . .+|
T Consensus 181 ~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g~~--~------------------~~g 228 (358)
T 4gs5_A 181 MTETVSHVALKALN--GPEASELYVFLPGIQYGVDE----------RGCLHISGAV--T------------------NGQ 228 (358)
T ss_dssp CGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT----------TSEEEEESGG--G------------------TTC
T ss_pred cccccceeeccccc--ccccceeeccCCCeEEEecC----------cCceEEeccc--c------------------cCc
Confidence 99998866544322 23567889999999887744 4899999831 1 268
Q ss_pred EEEeCCeee------------------ccEeeCHHHHHHHH---hcCCccceEEEE-eEecCCCCeEEEEEEEEcCCCCC
Q 004348 626 YYFTGDGCS------------------SGHRIGTAEVESAL---VSHPQCAEAAVV-GVEHEVKGQGIYAFVTLVEGVPY 683 (759)
Q Consensus 626 ~y~TGDl~~------------------~G~rI~~~eIE~~L---~~~p~V~ea~Vv-~~~~~~~~~~lva~Vv~~~~~~~ 683 (759)
||+|||+|+ +|+||+|.|||++| .+||+|.+|+|+ +.+|+..++.++|+|+....
T Consensus 229 ~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~--- 305 (358)
T 4gs5_A 229 TVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP--- 305 (358)
T ss_dssp CEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC---
T ss_pred ceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC---
Confidence 999999998 89999999999877 568999999886 56788888999999876432
Q ss_pred cHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhc
Q 004348 684 SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 733 (759)
Q Consensus 684 ~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~ 733 (759)
+...++|+++|+++||.||+|+.|+++++||+|++|||||++|++.+++
T Consensus 306 -~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 306 -EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp -HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred -CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 4456889999999999999999999999999999999999999998764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=403.45 Aligned_cols=311 Identities=20% Similarity=0.182 Sum_probs=248.3
Q ss_pred cCC-CCcEEEEeccCCCCCCcEEEEccchHHHHHHHHH---HHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEE
Q 004348 384 VDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF---KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 384 ~~~-~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~---~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlv 459 (759)
..+ +++++|+|||||||.||||+++|+++... .... ...+++.++|++++..+++|..+....++.++..|++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSW-ANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHH-HHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHH-HHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 445 88999999999999999999999995433 3322 234689999999999999877766677888999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCcc
Q 004348 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (759)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (759)
+.+. .++..+++.|+++++|++.++|+++..|++.........++++||.+++|||++++++.++|.+.+| ++
T Consensus 161 ~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 233 (436)
T 3qov_A 161 PAAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN---VK 233 (436)
T ss_dssp CCCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC---cc
Confidence 8754 3889999999999999999999999999876432111224789999999999999999999999997 89
Q ss_pred Eeeeeccccccce-ecccCCCCCCCCCCCcCCCCCCceEEEEC-CCCcccCCCceEEEEEecCCCcccccccCChhhHHh
Q 004348 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (759)
Q Consensus 540 l~n~YG~TE~~~~-~~~~~~~~~~~~~~~iG~p~~g~~~~IvD-~~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~ 617 (759)
++|.||+||+++. +..... .....+.|.+++.++|+| ++++++|.|+.|||+|+|.. ..
T Consensus 234 v~~~YG~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~--------------~~ 294 (436)
T 3qov_A 234 AYNSFGMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD--------------RE 294 (436)
T ss_dssp EEEEEEEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS--------------CC
T ss_pred EEecCcchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC--------------cC
Confidence 9999999999654 332221 122367788899999999 78999999999999999921 11
Q ss_pred hhcccCCcEEEeCCeee----------------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCe
Q 004348 618 TYFKPFPGYYFTGDGCS----------------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 669 (759)
Q Consensus 618 ~~~~~~~g~y~TGDl~~----------------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 669 (759)
.+ ..+||+|||+|+ +|+||+|.|||++|.+||+|.+++|++.+++..++
T Consensus 295 ~~---~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~ 371 (436)
T 3qov_A 295 MM---PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQD 371 (436)
T ss_dssp SS---CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEE
T ss_pred Cc---eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCc
Confidence 11 257999999865 79999999999999999999999999999888889
Q ss_pred EEEEEEEEcCCCCCc-HHHHHHHHHHHHhhcCCC-ccccEEEEeC--CCCCCCCCcccHHH
Q 004348 670 GIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAF-AAPDKIHWAP--GLPKTRSGKIMRRI 726 (759)
Q Consensus 670 ~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~-~vP~~iv~v~--~lP~T~~GKvdR~~ 726 (759)
.++++|+++ +...+ ....++++++|+++|+.+ ++|..+++++ +||+|+ ||++|..
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 999999998 54332 223467788888888888 9999999999 999999 9999853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=394.25 Aligned_cols=318 Identities=19% Similarity=0.178 Sum_probs=250.4
Q ss_pred ccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHH--HHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEEE
Q 004348 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (759)
Q Consensus 383 ~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl 460 (759)
...++++++|+|||||||.||||+++|+++...... .....+++.++|++++..+++|..+....++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 346789999999999999999999999995433221 122357899999999999986433334567889999999988
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCccE
Q 004348 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (759)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l 540 (759)
.+. .+++.+++.|+++++|++.++|+++..|++.........++++||.+++|||++++++.+++.+.+| +++
T Consensus 168 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 240 (443)
T 2y4o_A 168 MSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG---IDA 240 (443)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---CEE
T ss_pred CCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC---cCE
Confidence 754 3899999999999999999999999999875321111112479999999999999999999999987 889
Q ss_pred eeeeccccccce-ecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHhh
Q 004348 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (759)
Q Consensus 541 ~n~YG~TE~~~~-~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~ 618 (759)
+|.||+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+.|||+|+|. . .+.
T Consensus 241 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~--t------------~~~ 302 (443)
T 2y4o_A 241 LDIYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL--T------------KEA 302 (443)
T ss_dssp EEEEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES--S------------CSS
T ss_pred EeccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC--C------------ccc
Confidence 999999998543 3322221 1112455778999999995 699999999999999982 1 111
Q ss_pred hcccCCcEEEeCCeee-------------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEE
Q 004348 619 YFKPFPGYYFTGDGCS-------------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 673 (759)
Q Consensus 619 ~~~~~~g~y~TGDl~~-------------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 673 (759)
| ..+||+|||+|+ +|++|+|.|||++|.+||+|.+++|++++++..++.+++
T Consensus 303 ~---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a 379 (443)
T 2y4o_A 303 M---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL 379 (443)
T ss_dssp S---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEE
T ss_pred C---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEE
Confidence 1 257999998754 799999999999999999999999999988777889999
Q ss_pred EEEEcC--CCCCcHHHHHHHHHHHHhhcCCCc-cccEEEEe--CCCCCCCCCcccHHHHH
Q 004348 674 FVTLVE--GVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRILR 728 (759)
Q Consensus 674 ~Vv~~~--~~~~~~~l~~~l~~~l~~~Lp~~~-vP~~iv~v--~~lP~T~~GKvdR~~L~ 728 (759)
+|++++ +........++|+++|+++|+.|+ +|..|.++ ++||+|++||++|+..+
T Consensus 380 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 380 AVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 999875 322122235788899999999875 99988888 59999999999997543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-43 Score=391.93 Aligned_cols=314 Identities=18% Similarity=0.124 Sum_probs=251.0
Q ss_pred ccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHH--HHHHHHhCCCCCcEEEEecCcc-hhchhhHHHHHHhhcCcEEE
Q 004348 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCG-WITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 383 ~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~--~~~~~~~~l~~~d~~l~~~~l~-~~~g~~~~~~~~L~~G~tlv 459 (759)
...++++++|+|||||||.||||+++|+++..... ......++++++|++++..+++ |..+ ...++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LGAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hHHHHHHHHcCCEEE
Confidence 34678999999999999999999999999543322 1122357899999999999984 5544 456788999999998
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCcc
Q 004348 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (759)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (759)
+.+. .+++.+++.|+++++|++.++|+++..|++.........++++||.+++|||++++++.+++.+.+| ++
T Consensus 165 ~~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 237 (437)
T 2y27_A 165 PFGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---ID 237 (437)
T ss_dssp CCCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC---cC
Confidence 7654 3899999999999999999999999999875321111112478999999999999999999999887 88
Q ss_pred Eeeeeccccccce-ecccCCCCCCCCCCCcCCCCCCceEEEECC-CCcccCCCceEEEEEecCCCcccccccCChhhHHh
Q 004348 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (759)
Q Consensus 540 l~n~YG~TE~~~~-~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~ 617 (759)
++|.||+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+.|||+|+| .. .+
T Consensus 238 v~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~t------------~~ 299 (437)
T 2y27_A 238 AVDIYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS--LT------------KE 299 (437)
T ss_dssp EEEEEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CS
T ss_pred EEecCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec--CC------------cC
Confidence 9999999998543 3322221 1112566778999999995 69999999999999998 21 11
Q ss_pred hhcccCCcEEEeCCeee-------------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEE
Q 004348 618 TYFKPFPGYYFTGDGCS-------------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIY 672 (759)
Q Consensus 618 ~~~~~~~g~y~TGDl~~-------------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lv 672 (759)
.| ..+||+|||+|+ +|++|+|.|||++|.+||+|.+++|++++++..++.++
T Consensus 300 ~~---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~ 376 (437)
T 2y27_A 300 AL---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLT 376 (437)
T ss_dssp SS---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEE
T ss_pred Cc---hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEE
Confidence 11 257999999876 89999999999999999999999999998877788999
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhhcCCCc-cccEEEEe--CCCCCCCCCcccHHH
Q 004348 673 AFVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRI 726 (759)
Q Consensus 673 a~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~-vP~~iv~v--~~lP~T~~GKvdR~~ 726 (759)
++|+++++........++|+++|+++|+.|+ +|..|.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999876653222335788999999999984 99998888 5999999 9999964
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=273.50 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=159.2
Q ss_pred cCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHH---HHHhCCCCCcEEEEecCc-chhchhhHHHHHHhhcCcEEE
Q 004348 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF---KYAFDYKPSDVYWCTADC-GWITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 384 ~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~---~~~~~l~~~d~~l~~~~l-~~~~g~~~~~~~~L~~G~tlv 459 (759)
..++++++|+|||||||+||||+++|+++. ....+. ...+++.++|++++..|+ .|+.++ ...+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIE-ALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHH-HHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHH-HHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EE
Confidence 467899999999999999999999999954 434322 244678899999999999 887775 45666789999 55
Q ss_pred EecCCCCCCChh-----------------------HHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEE
Q 004348 460 VFEGAPTYPDSG-----------------------RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (759)
Q Consensus 460 l~~~~~~~~d~~-----------------------~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (759)
+... ++|. .++++|+++++|++.++|+++..|++... ....++++||.+++
T Consensus 165 ~~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITL 238 (369)
T ss_dssp ECCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--HHHHHHHHCSEEEE
T ss_pred ECcc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--hhccccCCeeEEEE
Confidence 5432 3666 78889999999999999999999987632 22245689999999
Q ss_pred eCCCCCHHHHHHHH-HHhCCCCccEeeeeccccccceecccCCCCCCCCCC-CcCCC------CCCceEEEECC-CCccc
Q 004348 517 VGEPINPSAWRWFF-NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG-SATFP------FFGVQPVIVDE-KGVEI 587 (759)
Q Consensus 517 gGe~l~~~~~~~~~-~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~-~iG~p------~~g~~~~IvD~-~g~~v 587 (759)
|||++++++++++. +.++ +++++|.||+||+++++.. .+. ++|+| +++++++|+|+ +++++
T Consensus 239 gGe~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~--------~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~v 308 (369)
T 3hgu_A 239 GGTELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRS--------LLITSESQQVIYDSFSPFITYDVVDSITAQTV 308 (369)
T ss_dssp ESSCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEE--------CCBCTTCSSCEEECCTTTEEEEEECTTTCSBC
T ss_pred CCccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceec--------cccccCCCcccccCCCCCeEEEEECCCCCcCC
Confidence 99999999999999 8884 4899999999999865531 122 58999 99999999998 99999
Q ss_pred CCCceEEEEEec
Q 004348 588 EGECSGYLCIKS 599 (759)
Q Consensus 588 p~g~~GEL~I~g 599 (759)
|.|+.|||+|++
T Consensus 309 p~G~~GEl~vt~ 320 (369)
T 3hgu_A 309 EYGERGNVIVTH 320 (369)
T ss_dssp CTTCEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 999999999998
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-12 Score=112.99 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=68.4
Q ss_pred Ceee-ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHH----HHHHHHHHHHhhcCCCccc
Q 004348 631 DGCS-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEE----LRKSLVLAVRKQIGAFAAP 705 (759)
Q Consensus 631 Dl~~-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~----l~~~l~~~l~~~Lp~~~vP 705 (759)
|+.. +|++|+|.|||++|.+||+|.+++|++++++..++.+.++|+..++...+.. +.++|++++++.+. +|
T Consensus 5 DmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g---v~ 81 (109)
T 3lax_A 5 DMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL---VT 81 (109)
T ss_dssp SCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS---SC
T ss_pred EEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC---Cc
Confidence 4444 8999999999999999999999999999999889999999999887655433 34455555555543 45
Q ss_pred cEEEEeC--CCCCCCCCcccH
Q 004348 706 DKIHWAP--GLPKTRSGKIMR 724 (759)
Q Consensus 706 ~~iv~v~--~lP~T~~GKvdR 724 (759)
..+++++ +||+| +||++|
T Consensus 82 ~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 82 PRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CEEEEECTTCSCCC----CCC
T ss_pred cceEEEcCCeecCC-CCCcch
Confidence 5566664 79999 799987
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00035 Score=78.91 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=66.9
Q ss_pred CCC---eeEEEEeCCCCCHHHHHHHHHHhCCCCccEe-eeeccccccceecccCCCCCCCCCCCcCC-CCCCc-eEEEEC
Q 004348 508 RKS---LRVLGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGV-QPVIVD 581 (759)
Q Consensus 508 l~s---Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~-p~~g~-~~~IvD 581 (759)
+|. +..++.||- ..-..+++..+| +++++ ..|+.||.- +.+ +.... ..+...+. .+++. -.+.++
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g--~~p~~~~~Y~ASEg~-~gi-~~~p~--~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCN--DLPLVSTTYGSSETT-FGI-NLDPL--CKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHT--TCCEECCEEECSSCE-EEE-CSCTT--SCGGGCCEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcC--CCccccCccccccce-eee-ccCCC--CCcccCceeecCCcEEEEEEe
Confidence 566 555556662 222345556666 47887 899999952 232 22111 11111222 23333 233443
Q ss_pred --CC-------CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee------------------
Q 004348 582 --EK-------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS------------------ 634 (759)
Q Consensus 582 --~~-------g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~------------------ 634 (759)
+. ...|..|+.+||+|+.. . |.| -|++||+++
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt~-~----GL~----------------RYr~GD~v~v~~f~~~~p~i~f~gR~~ 425 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTNF-A----GLY----------------RMRVGDIVLVTGFYNNAPQFKFVRREN 425 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEECS-S----SCC----------------SEECCEEEEEEEEETTEEEEEEEEETT
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEeec-c----cee----------------eEEcCCEEEEcccCCCCcEEEEEEecC
Confidence 21 13466899999999982 1 222 188888776
Q ss_pred -----ccEeeCHHHHHHHHhcC
Q 004348 635 -----SGHRIGTAEVESALVSH 651 (759)
Q Consensus 635 -----~G~rI~~~eIE~~L~~~ 651 (759)
.|.+|...+||++|.+-
T Consensus 426 ~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 426 VVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEECSSSCCEEHHHHHHHHHHC
T ss_pred CEEEeeeeECCHHHHHHHHHHH
Confidence 89999999999999843
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0028 Score=71.40 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=78.3
Q ss_pred CCCeeE--EEEeCCCCCHHHHHHHHHHhCCCCccEe-eeeccccccceecccCCCCCCCCCCCcCC-CCCCce-EEEE--
Q 004348 508 RKSLRV--LGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGVQ-PVIV-- 580 (759)
Q Consensus 508 l~sLr~--v~~gGe~l~~~~~~~~~~~~g~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~-p~~g~~-~~Iv-- 580 (759)
+|.|++ ++.+|. + ..-..+++..+| +++++ ..|+.||.- +.+ +.... ..++..+. .+++.. .+.+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g--~~p~~~~~Y~ASEg~-~gi-~~~p~--~~~~~~~~~L~p~~~ffEFiP~ 372 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAG--DLPLVSHDYGSSEGW-IAA-NVTPR--LSPEEATFAVIPNLGYFEFLPV 372 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHT--TSCEEECCEEETTEE-EEE-CCCTT--SCTTTCCEEECTTSCEEEEEEC
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcC--CCccccCceecccee-eee-ecCCC--CCccccceeecCCcEEEEEEec
Confidence 577763 344552 2 222245556666 47877 899999962 332 22111 11111222 233332 2233
Q ss_pred CCC---------CcccCCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-----------------
Q 004348 581 DEK---------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS----------------- 634 (759)
Q Consensus 581 D~~---------g~~vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~----------------- 634 (759)
|+. ...|..|+.+||+|+.. . |.| -|++||+++
T Consensus 373 ~~~~~~~~~~v~l~eve~G~~YelviTt~-~----GL~----------------RYr~GD~v~v~g~~~~~p~~~~~gR~ 431 (581)
T 4epl_A 373 SETGEGEEKPVGLTQVKIGEEYEVVITNY-A----GLY----------------RYRLGDVVKVIGFYNNTPQLKFICRR 431 (581)
T ss_dssp -------CCCEEGGGCCTTCEEEEEEEST-T----SCS----------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccCCCCceeeHHHcCCCCeEEEEEeec-c----cee----------------eEEcCCEEEEecccCCCcEEEEEeec
Confidence 321 13577899999999882 1 222 288888876
Q ss_pred ------ccEeeCHHHHHHHHhc------CC--ccceEEEEeEecCCCCeEEEEEEEEcC
Q 004348 635 ------SGHRIGTAEVESALVS------HP--QCAEAAVVGVEHEVKGQGIYAFVTLVE 679 (759)
Q Consensus 635 ------~G~rI~~~eIE~~L~~------~p--~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 679 (759)
.|.++...+||++|.+ .. .|.|..+.... ......-+.|+.+..
T Consensus 432 ~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~-~~~p~hyv~~wE~~~ 489 (581)
T 4epl_A 432 NLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV-STDPGHYAIFWEISG 489 (581)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC-SSSSCEEEEEEEESS
T ss_pred CCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC-CCCCCcEEEEEeecC
Confidence 7999999999999874 22 36666655422 222234555667653
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0015 Score=73.92 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.5
Q ss_pred cCCCCcEEEEeccCCC-CCCcEEEEccch
Q 004348 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGG 411 (759)
Q Consensus 384 ~~~~d~a~IiyTSGST-G~PKgV~~th~~ 411 (759)
..++.+.++.-||||| |+||-|.+|...
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~ 124 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEE 124 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHH
Confidence 3566778999999999 889999999986
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.005 Score=69.34 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhh
Q 004348 104 AGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (759)
Q Consensus 104 ~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~ 164 (759)
.++|||.+.+.. .++++...++|++++|+++++++++++|..+|++++++|+.+++++.
T Consensus 460 ~~~~~L~l~~~~--~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~l~ 518 (520)
T 2jgp_A 460 HAKFDLTFSATE--EREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEID 518 (520)
T ss_dssp BCSSSEEEEEEE--CSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGGCC
T ss_pred ceeeeeEEEEEE--CCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCchhhcC
Confidence 789999888764 45778899999999999999999999999999999999999887653
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.02 Score=63.91 Aligned_cols=59 Identities=8% Similarity=-0.161 Sum_probs=43.2
Q ss_pred CCCCcc---hhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhh
Q 004348 103 GAGKIS---RLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (759)
Q Consensus 103 ~~~~fd---l~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~ 164 (759)
++++|| |.+.+... ++++...+.|++++| ++++++++++|..+|++++++|+.+++++.
T Consensus 408 ~~~~~~~~~l~l~v~~~--~~~l~~~~~y~~~l~-~~~i~~l~~~~~~~L~~~~~~p~~~l~~l~ 469 (493)
T 4hvm_A 408 GTDTWDGTTTDLSVGEL--GEDMVIVLDQRRTHP-AGGGSALLDGLDAAMAQAVADPSAPLPHST 469 (493)
T ss_dssp CCCCCCCCCEEEEEEEE--TTEEEEEEEECC--------CHHHHHHHHHHHHHHHCTTSBCCC--
T ss_pred cccccCCcceEEEEEEe--CCeEEEEEEEccccC-HHHHHHHHHHHHHHHHHHHhCCCCccccCC
Confidence 346788 87776644 578889999999999 999999999999999999999999988774
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.045 Score=60.36 Aligned_cols=55 Identities=5% Similarity=-0.043 Sum_probs=46.9
Q ss_pred CCCCcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHH
Q 004348 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF 159 (759)
Q Consensus 103 ~~~~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~ 159 (759)
..++|||.+.+.. .++++...++|++++|+++++++++++|.++|++++++|+..
T Consensus 406 ~~~~~~l~~~~~~--~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~~~~~ 460 (466)
T 2xhg_A 406 SEVYTALNITGLI--EGGELVLTFSYSSEQYREESIQQLSQSYQKHLLAIIAHCLQS 460 (466)
T ss_dssp SBCCCSEEEEEEE--ETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceeEEEEEEE--ECCEEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3457888777653 347788999999999999999999999999999999998764
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=86.43 E-value=0.063 Score=58.53 Aligned_cols=55 Identities=5% Similarity=-0.036 Sum_probs=48.2
Q ss_pred chhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhC---hHHHHHHh
Q 004348 108 SRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVED---PAGFWADI 163 (759)
Q Consensus 108 dl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~---p~~~~~~l 163 (759)
||.+.+... .++++...+.|++++|+++++++++++|..+|++++++ |+.+++++
T Consensus 361 ~l~l~v~~~-~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 361 GINFTFRGS-PQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARL 418 (436)
T ss_dssp SEEEEEEEC-TTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred ceEEEEEec-CCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHH
Confidence 777776521 24678889999999999999999999999999999999 99999998
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=4.3 Score=43.86 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred CCCeEEEEEE-cCCCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--hHHHHHHHHHHHhCCeEEecC
Q 004348 214 LGDKVAIYWE-ANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (759)
Q Consensus 214 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~e~iva~LA~~kaGav~vpld 288 (759)
.++.+|.+.. +...| ..-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4566765543 22222 234689999998888888888889999999999998863 333456788899999988766
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+ ...+++...+++.++.+++....
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHH
Confidence 5 57899999999999999987654
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=84.14 E-value=4.6 Score=43.76 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=75.2
Q ss_pred CCCeEEEE-EEcCCCCc--ceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--hHHHHHHHHHHHhCCeEEecC
Q 004348 214 LGDKVAIY-WEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (759)
Q Consensus 214 ~pd~~Al~-~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~e~iva~LA~~kaGav~vpld 288 (759)
.++.+|.+ +.+...|. .-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+..++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 45666644 33322232 34689999998888888888889999999999998864 334556788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 004348 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 289 p~~~~~~l~~il~~~~~~~iit~~~ 313 (759)
+ ...+++...+++.++.+++....
T Consensus 170 ~-~~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 170 G-GQTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEECHH
Confidence 5 48889999999999999987654
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=5 Score=43.32 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=75.4
Q ss_pred CeEEEEEEcC-CCC--cceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--hHHHHHHHHHHHhCCeEEecCCC
Q 004348 216 DKVAIYWEAN-DPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAG 290 (759)
Q Consensus 216 d~~Al~~~~~-~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~e~iva~LA~~kaGav~vpldp~ 290 (759)
+.+|.+...+ ..| ..-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 6777655432 222 235689999999998888888889999999999998753 4445567888999999888765
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCC
Q 004348 291 FSSDSLAQRIMDCKPKVVITSNA 313 (759)
Q Consensus 291 ~~~~~l~~il~~~~~~~iit~~~ 313 (759)
...+++...+++.++.+++....
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHH
Confidence 47789999999999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 759 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 0.0 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 0.0 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-90 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 5e-80 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-75 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-75 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-71 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 636 bits (1642), Expect = 0.0
Identities = 330/646 (51%), Positives = 432/646 (66%), Gaps = 30/646 (4%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
+ + + L+ +P++Y YK+S+ DP FW + W + Q+V + + GN
Sbjct: 5 IPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKVKNTSFA--PGN 60
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
V I+W++ G N+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN
Sbjct: 61 VSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANT 119
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
L D+G+KKGD V IY+PM+ E +AMLACARIGAVHSV+F GFS +++A I+D ++V
Sbjct: 120 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 179
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT++ R ++I LK VD AL + + + L T + WQ+GRD+WW
Sbjct: 180 ITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR------TGSDIDWQEGRDLWW 233
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
+D++ K + + E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P
Sbjct: 234 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 293
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
D+YWCTAD GW+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTA
Sbjct: 294 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTA 353
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R+LM +G++ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTE
Sbjct: 354 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 413
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGGFMITPLPGA K GSAT PFFGVQP +VD +G EG G L I SWPG RTL
Sbjct: 414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 473
Query: 609 YGDHERYETTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALV 649
+GDHER+E TYF F YF+GDG SGHR+GTAE+ESALV
Sbjct: 474 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 533
Query: 650 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 709
+HP+ AEAAVVG+ H +KGQ IYA+VTL G S EL + VRK+IG A PD +H
Sbjct: 534 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 593
Query: 710 WAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755
W LPKTRSGKIMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 594 WTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLE 639
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 543 bits (1400), Expect = 0.0
Identities = 292/644 (45%), Positives = 386/644 (59%), Gaps = 39/644 (6%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFY-WKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
Q Y ++K S+EDPA F+ A++F W + + + + R WF G N
Sbjct: 1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNA 60
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAV 260
CYNC+DR+ +K AI +E ++PG ++TY +LL++VCQ+A L +GV+KGD V
Sbjct: 61 CYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTV 119
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
+Y+PM+ E I +LA +RIGA+HSVVFAGFSS+SL RI D KVVIT++ RG K
Sbjct: 120 AVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKV 179
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I K IVD AL E + T + + RD+ W KY T
Sbjct: 180 IETKRIVDDALRETPGVRHVLVYRKT-------NNPSVAFHAPRDLDWATEKKKYKTYYP 232
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
VD+EDPLFLLYTSGSTG PKGV H+T GY++ T +Y FD DV++ D GW
Sbjct: 233 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 292
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
ITGH+YV YGP+L G + +VFEG P YP+ R WDI+D++KVT FY APT +R L R G+
Sbjct: 293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD 352
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
Y+ +S KSLR LGSVGEPI W W+ +G + PI DT+WQTE+G ++TPL G
Sbjct: 353 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG 412
Query: 561 -WPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYET 617
P KPGSA+FPFFG+ V++D E G L +K++WP RT++ +H+RY
Sbjct: 413 VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 472
Query: 618 TYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAEAA 658
TY P+PGYYFTGDG SGHR+ TAE+E+A++ P AE A
Sbjct: 473 TYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 532
Query: 659 VVGVEHEVKGQGIYAFVTLVEGVPYS-------EELRKSLVLAVRKQIGAFAAPDKIHWA 711
VVG ++ GQ + AFV L +S ++++K LV VRK IG FAAP I
Sbjct: 533 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 592
Query: 712 PGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 755
LPKTRSGKIMRRILRKI + + D+LGD STL++PG+V LI
Sbjct: 593 DDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLID 636
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 292 bits (748), Expect = 1e-90
Identities = 110/555 (19%), Positives = 185/555 (33%), Gaps = 67/555 (12%)
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
++ L+R G K + G TY+++ Q+ +L L+ +GV GD V
Sbjct: 14 WDFLERAAAL-FGRKEVVSRL--HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 70
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
A A +GAV S +A + + KV++ +
Sbjct: 71 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDP---------N 121
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
L +V+A E + + + + +
Sbjct: 122 LLPLVEAIRGELKT-----------------VQHFVVMDEKAPEGYLAYEEALGEEADPV 164
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
V + YT+G+TG PKGV+++ ++H+ +
Sbjct: 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 224
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
+ Y L GA V+ D ++ D VT PT+ +L
Sbjct: 225 NAWCLPYAATLVGAKQVLP---GPRLDPASLVELFDGEGVTFTAGVPTVWLALAD--YLE 279
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFN-----VVGDSRCPISDTWWQTETGGFMITPL 557
T + K+LR L G S F G S Q + +
Sbjct: 280 STGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS 339
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCIKSSWPGAFRTLYGDHERY 615
P V+ + DE+G V +G+ G + +K W YG+ E
Sbjct: 340 EEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWI--TGGYYGNEEAT 397
Query: 616 ETTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVSHPQCAE 656
+ G++ TGD S G I + ++E+AL+ HP+ E
Sbjct: 398 RSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKE 455
Query: 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 716
AAVV + H + A V P EEL + L ++ + PD +A +P+
Sbjct: 456 AAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPR 512
Query: 717 TRSGKIMRRILRKIA 731
T +GK ++R LR+
Sbjct: 513 TSAGKFLKRALREQY 527
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 264 bits (674), Expect = 5e-80
Identities = 94/564 (16%), Positives = 183/564 (32%), Gaps = 62/564 (10%)
Query: 193 WFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI 252
G + + R A + +A D ++ +TY++ + +LA +K
Sbjct: 14 LEDGTAGEQLHKAMKRY--ALVPGTIAF----TDAHIEVNITYAEYFEMSVRLAEAMKRY 67
Query: 253 GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 312
G+ +++ ++ + +L IG + ++ L + +P VV S
Sbjct: 68 GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK 127
Query: 313 AVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372
+ + K + + ++++ + +Q +
Sbjct: 128 KGLQ-------------KILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHLP 170
Query: 373 PKY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430
P + + + ++ +SGSTG PKGV V + F
Sbjct: 171 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN---Q 227
Query: 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
+ TA + H L + + YK+ PT
Sbjct: 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 287
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
L + + +Y +L + S G P++ I + TET
Sbjct: 288 LFSFFAKS--TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETT 343
Query: 551 GFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLY 609
++ G KPG+ + +VD + G + G LC++ P
Sbjct: 344 SAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR--GPMIMSGYV 399
Query: 610 GDHERYETTYFKPFPGYYFTGDGC-------------------SSGHRIGTAEVESALVS 650
+ E K G+ +GD G+++ AE+ES L+
Sbjct: 400 NNPEATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 457
Query: 651 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIH 709
HP +A V G+ + G+ A V L G +E+ +V V Q+ +
Sbjct: 458 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVV 514
Query: 710 WAPGLPKTRSGKIMRRILRKIASR 733
+ +PK +GK+ R +R+I +
Sbjct: 515 FVDEVPKGLTGKLDARKIREILIK 538
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 251 bits (641), Expect = 2e-75
Identities = 99/538 (18%), Positives = 180/538 (33%), Gaps = 90/538 (16%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
+ VAI E + LTY +L + QLA + G+ K V I + ++L I +
Sbjct: 37 PNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 90
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA + G + + + + + + D + ++++T + I V+
Sbjct: 91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVE------ 144
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
I+ +D + + D +++Y
Sbjct: 145 -------------------------------IFEEDTIKIREGTNLHVPSKSTDLAYVIY 173
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TG PKG + + F+ + + D A + + +
Sbjct: 174 TSGTTGNPKGT-MLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 232
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
+ + T D + +++ ++T+ PT V ++ S++ L
Sbjct: 233 AS--LYIILKDTINDFVKFEQYINQKEITVITLPPTYVV--------HLDPERILSIQTL 282
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW-PQKPGSATFPFF 573
+ G +PS + + + + TET T + P
Sbjct: 283 ITAGSATSPSLVNKWK-----EKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQ 337
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY----FKPFPGYYFT 629
Q IVDE +G LCI G R + E + F P Y T
Sbjct: 338 NTQIYIVDENLQLKSVGEAGELCIG--GEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395
Query: 630 G-------DGC------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 670
G DG GHR+ EVES L+ H +E AV + +
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 455
Query: 671 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 728
+ A+ + +P E+LR+ +++ + P +P T +GKI R+ L
Sbjct: 456 LCAYFVSEKHIP-LEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 251 bits (641), Expect = 3e-75
Identities = 95/537 (17%), Positives = 181/537 (33%), Gaps = 58/537 (10%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
GD++AI + +Y +L + +LA + +G+++ D V++ LP + E +
Sbjct: 39 GDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVI 92
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A R+GA+ S + + I +A
Sbjct: 93 FALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-------------- 138
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L + QS + G + + + ++ V + D FL
Sbjct: 139 ---------SLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQL 189
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
+ GSTG K + T Y+ + S VY S +L
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYSLKRSV-EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
VV P ++ ++++ KVTI P L M + S + +
Sbjct: 249 AGGRVVL---SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQV 305
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFG 574
G G + A R V G + + T L + P
Sbjct: 306 G--GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVN----YTRLDDPEEIIVNTQGKPMSP 359
Query: 575 VQPV-IVDEKGVEIEGECSGYLCIKSSWPGA---FRTLYGDHERYETTYFKPFPGYYFTG 630
+ D+ +++ +G+L + + + E +++ T
Sbjct: 360 YDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419
Query: 631 DGC------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV 678
DG G ++ EVE+ L++HP +AA+V + + G+ F+
Sbjct: 420 DGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR 479
Query: 679 EGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 735
+ P + EL+ L + + A+ PD++ + P+T GK+ ++ LR+ S +L
Sbjct: 480 DEAPKAAELKAFL---RERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 239 bits (611), Expect = 2e-71
Identities = 94/528 (17%), Positives = 171/528 (32%), Gaps = 56/528 (10%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ A LT+++L +V +A L G++ V + P ++ IA+
Sbjct: 16 PDHCALAVPARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAI 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R+GAV +++ S LA+ I + + + + + DA
Sbjct: 72 LALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG----------RQVADAIFQSG 121
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ + I L +DG + + E + P F+ Y
Sbjct: 122 SGARIIFLGDL--------------VRDGEPYSYGPPI-------EDPQREPAQPAFIFY 160
Query: 395 TSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
TSG+TG PK + + + + +V + G V +
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
+ VV E + +V + +VT + PT + +L + SLR
Sbjct: 221 LDGTYVVVEEFRP----VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ G + + + + I T + S
Sbjct: 277 VTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSE--VRI 334
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
VDE E S++ G E+ + +++ +T +G
Sbjct: 335 VRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGT 394
Query: 634 ------------SSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 681
S G I +E+E L + P E V+G+ + GQ + A V G
Sbjct: 395 VRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE 454
Query: 682 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729
S + + + ++ F P + LPK K++RR L +
Sbjct: 455 TLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQLVQ 500
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 759 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 92.58 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.6e-100 Score=894.58 Aligned_cols=616 Identities=53% Similarity=0.988 Sum_probs=540.6
Q ss_pred hhhhhccCCCChhHHHHHHHHHhhChHHHHHHhhcccccccccccccccccccccCCCcccccCCCccccHHHHHHhhcc
Q 004348 131 DDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNI 210 (759)
Q Consensus 131 ~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~ 210 (759)
+.+.+++.. .+++|++|++++++||+.||+++++.+.|.++++. +++.. ...+..+.+||+++++|.++|+|+||+
T Consensus 7 ~~~~~~~~~-~~~~y~~l~~~s~~~~~~fW~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~wf~~~~~N~~~n~ldrh~ 82 (643)
T d1pg4a_ 7 ANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPYQK-VKNTS--FAPGNVSIKWYEDGTLNLAANCLDRHL 82 (643)
T ss_dssp HHHHHHCSS-CHHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSC-CEEEE--CCTTCCEEEESTTCEECHHHHHTGGGH
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhCHHHHHHHHHhheeEECCCcc-cccCc--cCCCCCCCeeCCCChhhHHHHHHHHHH
Confidence 445554544 58999999999999999999999988999999887 65322 223344569999999999999999999
Q ss_pred cccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCC
Q 004348 211 EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290 (759)
Q Consensus 211 ~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~ 290 (759)
+ .+||++|+++.+++++..+++||+||.++++++|++|+++||++||+|+|+++|++++++++|||+++|++++|++|.
T Consensus 83 ~-~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~ 161 (643)
T d1pg4a_ 83 Q-ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 161 (643)
T ss_dssp H-HHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTT
T ss_pred H-hCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCC
Confidence 8 899999999987766778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhh
Q 004348 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQD 370 (759)
Q Consensus 291 ~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (759)
++.+++.++|+++++++||+++...+..+....+..+...+... ....+.+++++..... ........+..+.+
T Consensus 162 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~ 235 (643)
T d1pg4a_ 162 FSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP--NVTSVEHVIVLKRTGS----DIDWQEGRDLWWRD 235 (643)
T ss_dssp SCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTST--TCCSCCEEEEECSSCC----CCCCCBTTEEEHHH
T ss_pred CCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhcc--ccccceEEEEeccCCc----ccccccccchhhhh
Confidence 99999999999999999999998888888887777776665432 1245677777765542 23333445555666
Q ss_pred hcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHH
Q 004348 371 VVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYG 450 (759)
Q Consensus 371 ~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~ 450 (759)
..........+...+++|+++|+|||||||+||||+++|++++.+....+...++++++|++++.+|++|++++.+.+++
T Consensus 236 ~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~ 315 (643)
T d1pg4a_ 236 LIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYG 315 (643)
T ss_dssp HHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHH
T ss_pred hhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Confidence 66555555666677899999999999999999999999999887777777888999999999999999999998888999
Q ss_pred HhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHH
Q 004348 451 PMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFF 530 (759)
Q Consensus 451 ~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 530 (759)
+|++|++++++++.+..+++..++++|++++||+++++|++++.|++.........++++||.+++|||++++++++++.
T Consensus 316 ~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~ 395 (643)
T d1pg4a_ 316 PLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYW 395 (643)
T ss_dssp HHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHH
Confidence 99999999999988888899999999999999999999999999998766555677899999999999999999999999
Q ss_pred HHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEecCCCcccccccC
Q 004348 531 NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYG 610 (759)
Q Consensus 531 ~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g~~~~v~~GY~~ 610 (759)
+.+|..++++++.||+||++++++...+...+.+.+++|+|++|++++|+|++|++++.|+.|||+|+|++|++++|||+
T Consensus 396 ~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~ 475 (643)
T d1pg4a_ 396 KKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFG 475 (643)
T ss_dssp HHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETT
T ss_pred HHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccC
Confidence 99987778999999999999877766555555678999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEE
Q 004348 611 DHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGI 671 (759)
Q Consensus 611 ~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~l 671 (759)
+++++.+.|+...+|||+|||+|+ +|+||+|.|||++|.+||+|.||+|++++++..++.+
T Consensus 476 ~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~ 555 (643)
T d1pg4a_ 476 DHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 555 (643)
T ss_dssp CHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEE
T ss_pred ChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEE
Confidence 999999999988899999999998 8999999999999999999999999999999899999
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhHH
Q 004348 672 YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVD 751 (759)
Q Consensus 672 va~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~~ 751 (759)
+|||+++++...++++.++|+++|+++||+||+|+.|+++++||+|++|||+|++|++++.++..++.+++|++||++++
T Consensus 556 ~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~~~~t~~~p~~l~ 635 (643)
T d1pg4a_ 556 YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVE 635 (643)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCCccccCCccccCChHHHH
Confidence 99999999888788888999999999999999999999999999999999999999999998877788999999999999
Q ss_pred HHHhhh
Q 004348 752 QLIALA 757 (759)
Q Consensus 752 ~~~~~~ 757 (759)
+|++..
T Consensus 636 ~~~~~~ 641 (643)
T d1pg4a_ 636 KLLEEK 641 (643)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-93 Score=838.23 Aligned_cols=607 Identities=48% Similarity=0.867 Sum_probs=505.0
Q ss_pred hHHHHHHHHHhhChHHHHHHhhcc-cccccccccccccccccccC-CCcccccCCCccccHHHHHHhhcccccCCCeEEE
Q 004348 143 QKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRK-GNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (759)
Q Consensus 143 ~~~~~ll~~~~~~p~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al 220 (759)
+.|+.|++++++||++||.+++.+ +.|.+++++ ++..+..... .....+||+++++|+++|+|++|++ ++||++|+
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a~-~~pd~~Al 78 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDK-VFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHAL-KTPNKKAI 78 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSC-SBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHT-TCTTSEEE
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHhheeEecCCeE-eeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHHh-hCCCCEEE
Confidence 479999999999999999998765 789999887 6533322111 1123489999999999999999999 89999999
Q ss_pred EEEcCCCCcceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCChHHHHHHHHHHHhCCeEEecCCCCCHHHHHHH
Q 004348 221 YWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (759)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~e~iva~LA~~kaGav~vpldp~~~~~~l~~i 299 (759)
+|.+++.+..+++||+||+++++++|++|+ ++||++||+|+|+++|++|+++++|||+++|++++|++|.++++++.++
T Consensus 79 i~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~ 158 (640)
T d1ry2a_ 79 IFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDR 158 (640)
T ss_dssp EEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHH
T ss_pred EEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHH
Confidence 998776677899999999999999999997 6899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccccCCCCccchhhhcCCCCCCC
Q 004348 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379 (759)
Q Consensus 300 l~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (759)
++++++++++++.......+.+..+..+++..... ..+............ ...........+...........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 231 (640)
T d1ry2a_ 159 INDGDSKVVITTDESNRGGKVIETKRIVDDALRET----PGVRHVLVYRKTNNP---SVAFHAPRDLDWATEKKKYKTYY 231 (640)
T ss_dssp HHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC----TTCCEEEEECSSCCS---SCCCCSSSEEEHHHHHTTSCSCC
T ss_pred HHhhhccccccchhhhhccchhhhHHHHHhhhhhh----cccceeeeecccccc---ccccccccccccccccccccccc
Confidence 99999999999999888888888887776655433 344444444332210 11111112223333333334444
Q ss_pred CccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcchhchhhHHHHHHhhcCcEEE
Q 004348 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (759)
Q Consensus 380 ~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlv 459 (759)
...+..++|+++|+|||||||+||||+++|++++.+........+++.++|++++.+|++|++++++.++++|+.|++++
T Consensus 232 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 311 (640)
T d1ry2a_ 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATL 311 (640)
T ss_dssp CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEE
T ss_pred ccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEE
Confidence 45566789999999999999999999999999887777777778899999999999999999998888999999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCCCCHHHHHHHHHHhCCCCcc
Q 004348 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (759)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (759)
++++.+..+++..++++|+++++|++.++|++++.|.+.........++++||.+++|||++++++++++.+.+|...++
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~ 391 (640)
T d1ry2a_ 312 VFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391 (640)
T ss_dssp EECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSC
T ss_pred EecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcce
Confidence 99988887899999999999999999999999999988766555677899999999999999999999999999976788
Q ss_pred EeeeeccccccceecccCCC-CCCCCCCCcCCCCCCceEEEECCCCcc--cCCCceEEEEEecCCCcccccccCChhhHH
Q 004348 540 ISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKGVE--IEGECSGYLCIKSSWPGAFRTLYGDHERYE 616 (759)
Q Consensus 540 l~n~YG~TE~~~~~~~~~~~-~~~~~~~~iG~p~~g~~~~IvD~~g~~--vp~g~~GEL~I~g~~~~v~~GY~~~~e~~~ 616 (759)
+++.||+||++......... ..+.+++++|+|++|++++|+|+++.. .+.+..|||+|++++|+++.|||+++++|.
T Consensus 392 i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~ 471 (640)
T d1ry2a_ 392 IVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL 471 (640)
T ss_dssp EEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHH
T ss_pred EEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHH
Confidence 99999999998765544332 235678899999999999999986533 345678999999998999999999999999
Q ss_pred hhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEE
Q 004348 617 TTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 677 (759)
Q Consensus 617 ~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 677 (759)
+.|+.+.+|||+|||+|+ +|+||+|.|||++|.+||.|.||+|++++++..++.++|||++
T Consensus 472 ~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~ 551 (640)
T d1ry2a_ 472 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL 551 (640)
T ss_dssp HHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEE
T ss_pred hhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEE
Confidence 999988899999999998 8999999999999999999999999999999899999999999
Q ss_pred cCCCCCc-------HHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcccCCCCCCCCCCChhhH
Q 004348 678 VEGVPYS-------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 750 (759)
Q Consensus 678 ~~~~~~~-------~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~~~~~~~~~~~~~p~~~ 750 (759)
+++...+ +++.++|+++++++|++||+|+.|+++++||+|+||||+|++||+++.++.++++|.+|++||+++
T Consensus 552 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~d~~tl~np~~l 631 (640)
T d1ry2a_ 552 KNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIV 631 (640)
T ss_dssp C------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHH
T ss_pred cCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCccccCCcchhcCHHHH
Confidence 8765432 134678999999999999999999999999999999999999999999887788999999999999
Q ss_pred HHHHhhhc
Q 004348 751 DQLIALAD 758 (759)
Q Consensus 751 ~~~~~~~~ 758 (759)
++|++..+
T Consensus 632 ~~~~~~~~ 639 (640)
T d1ry2a_ 632 RHLIDSVK 639 (640)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 99998653
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1e-69 Score=622.34 Aligned_cols=489 Identities=18% Similarity=0.229 Sum_probs=389.7
Q ss_pred HHHHHHhhccccc---CCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHH
Q 004348 201 ICYNCLDRNIEAG---LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (759)
Q Consensus 201 ~~~~~l~~~~~~~---~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~ 277 (759)
++.++|.++++ + .|+.+|+++. +.++++||+||++++.++|++|+++||++||+|+|+++|++++++++|||
T Consensus 18 t~~~~l~~~~~-~~~~~P~~~a~~d~----~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~ 92 (541)
T d1lcia_ 18 TAGEQLHKAMK-RYALVPGTIAFTDA----HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGA 92 (541)
T ss_dssp CHHHHHHHHHH-HHHTSTTCEEEEET----TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHH
T ss_pred CHHHHHHHHHH-hhCCCCCeEEEEeC----CCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHH
Confidence 34555554444 3 4899999865 33678999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccc
Q 004348 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (759)
Q Consensus 278 ~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (759)
+++|++++|+++.++.+++.++|+++++++||++++.. +.+.+....+ +....+++++.....
T Consensus 93 ~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~---- 155 (541)
T d1lcia_ 93 LFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNVQKKL----PIIQKIIIMDSKTDY---- 155 (541)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHHHHC----TTCCEEEETTCSSCB----
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhccceEEeeecccc---------ccchhccccc----cccceeeeecCCccc----
Confidence 99999999999999999999999999999999987642 3344444444 566777766543210
Q ss_pred cccCCCCccchhhh----cC---CCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHH--HhCCCC
Q 004348 358 TKWQDGRDIWWQDV----VP---KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY--AFDYKP 428 (759)
Q Consensus 358 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~--~~~l~~ 428 (759)
. ....+.+. .. ......+.....+++++||+|||||||.||||+++|++++......... ...+.+
T Consensus 156 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~ 230 (541)
T d1lcia_ 156 Q-----GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 230 (541)
T ss_dssp T-----TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCT
T ss_pred c-----ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccc
Confidence 0 00111111 11 1111223334567889999999999999999999999965433322221 235678
Q ss_pred CcEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCC
Q 004348 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508 (759)
Q Consensus 429 ~d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l 508 (759)
++++++.+|+.|..+. ...+..+..|+.+++... .+....+.++.++++|.+.++|+++..++.... ....++
T Consensus 231 ~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~--~~~~~~ 303 (541)
T d1lcia_ 231 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDL 303 (541)
T ss_dssp TCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC--GGGSCC
T ss_pred cccccccccccccccc-cccccccccccccccccc----cccchhHHHHhhhhccccccCcccccccccccc--cccccc
Confidence 9999999999998874 566777888888877644 488899999999999999999999999988765 345678
Q ss_pred CCeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECC-CCccc
Q 004348 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEI 587 (759)
Q Consensus 509 ~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~-~g~~v 587 (759)
++||.+++||+++++..++++.+.++. ..+++.||+||+++.++..... ..+++++|+|++|++++|+|+ +++++
T Consensus 304 ~~l~~v~~gG~~~~~~~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~ 379 (541)
T d1lcia_ 304 SNLHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTL 379 (541)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHTTC--SCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBC
T ss_pred ccceEEEecccccccccccccccccCC--ceeeecCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCC
Confidence 999999999999999999999999883 5789999999999876654333 356789999999999999995 68999
Q ss_pred CCCceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHH
Q 004348 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESAL 648 (759)
Q Consensus 588 p~g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L 648 (759)
+.|+.|||+|+| ++++.||+++++.+...+. .+|||+|||+|+ +|+||+|.|||++|
T Consensus 380 ~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~~--~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l 455 (541)
T d1lcia_ 380 GVNQRGELCVRG--PMIMSGYVNNPEATNALID--KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESIL 455 (541)
T ss_dssp CTTCCEEEEEES--TTSCSEETTBHHHHHHHBC--TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHH
T ss_pred CCCCeEEEEEcc--CccCCeeCCChhhhhhccc--CCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHH
Confidence 999999999999 8999999999988776654 478999999998 89999999999999
Q ss_pred hcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCC-ccccEEEEeCCCCCCCCCcccHHHH
Q 004348 649 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWAPGLPKTRSGKIMRRIL 727 (759)
Q Consensus 649 ~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~-~vP~~iv~v~~lP~T~~GKvdR~~L 727 (759)
.+||+|.||+|++++++..++.++|+|+++++...+ .++|+++|+++|+++ ++|+.|+++++||+|++|||||++|
T Consensus 456 ~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l 532 (541)
T d1lcia_ 456 LQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---EKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKI 532 (541)
T ss_dssp HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHH
T ss_pred HhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCC---HHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHH
Confidence 999999999999999998999999999998876655 578999999999876 5899999999999999999999999
Q ss_pred HHHHhcc
Q 004348 728 RKIASRQ 734 (759)
Q Consensus 728 ~~~~~~~ 734 (759)
++++.++
T Consensus 533 ~~~~~~~ 539 (541)
T d1lcia_ 533 REILIKA 539 (541)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998753
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.1e-71 Score=631.46 Aligned_cols=496 Identities=22% Similarity=0.257 Sum_probs=368.5
Q ss_pred cccCCCccccHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHH
Q 004348 191 IEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL 270 (759)
Q Consensus 191 ~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~ 270 (759)
+.|+-+..+| ++++|+++++ ++||++|+++..+ ++.+++||+||+++++++|++|.++|+++||+|+|+++|++++
T Consensus 3 p~~~~~~~~~-l~~~l~~~a~-~~pd~~av~~~~~--g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~ 78 (534)
T d1v25a_ 3 PSTMMDEELN-LWDFLERAAA-LFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH 78 (534)
T ss_dssp BCCBCCCCCC-THHHHHHHHH-HSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCccCCCCCC-HHHHHHHHHH-HcCCCeEEEEecC--CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH
Confidence 3666666654 7899999999 9999999998643 3467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccC
Q 004348 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350 (759)
Q Consensus 271 iva~LA~~kaGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~ 350 (759)
++++|||+++|++++|++|.++.+++.++|+++++++++++.... .........+ ..+...+.....
T Consensus 79 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~ 145 (534)
T d1v25a_ 79 LEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVEAIRGEL----KTVQHFVVMDEK 145 (534)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHGGGC----SSCCEEEESSSC
T ss_pred HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh---------hhHHHHhhcc----cccceeEEeecc
Confidence 999999999999999999999999999999999999999887642 2222222222 445555543322
Q ss_pred ccccccccccCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHH-HHHHHHhCCCCC
Q 004348 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPS 429 (759)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~-~~~~~~~~l~~~ 429 (759)
.. ........ ............++++++|+|||||||.||||+++|.+++.+.. ......+.+...
T Consensus 146 ~~----------~~~~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~ 212 (534)
T d1v25a_ 146 AP----------EGYLAYEE---ALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 212 (534)
T ss_dssp CC----------TTCEEHHH---HCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTT
T ss_pred cc----------cccccccc---cccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccc
Confidence 11 00000000 01112223345688999999999999999999999999654332 222234566788
Q ss_pred cEEEEecCcchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCC
Q 004348 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (759)
Q Consensus 430 d~~l~~~~l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (759)
|++++.+|+.|..+.. ..+.+++.|+++++.... +++..++.++.++++|++.++|+++..++.... ....+++
T Consensus 213 d~~~~~~p~~~~~~~~-~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~--~~~~~~~ 286 (534)
T d1v25a_ 213 DVVLPVVPMFHVNAWC-LPYAATLVGAKQVLPGPR---LDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLK 286 (534)
T ss_dssp CEEEECSCTTSHHHHT-HHHHHHHHTCEEEECTTC---CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCS
T ss_pred cccccccchhhhcccc-ccceeeeecceeeecccc---ccccccchhhhhccccccccCchhhhhhhhhhc--ccccccc
Confidence 9999999999988754 556677888888887543 589999999999999999999999999987643 3455889
Q ss_pred CeeEEEEeCCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCC---------CCCCCCcCCCCCCceEEEE
Q 004348 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---------PQKPGSATFPFFGVQPVIV 580 (759)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~---------~~~~~~iG~p~~g~~~~Iv 580 (759)
+||.+++||+++++++++++.+ ++ .++++.||+||++..+........ ..+++++|+|++|++++|+
T Consensus 287 ~lr~~~~gG~~~~~~~~~~~~~-~~---~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~ 362 (534)
T d1v25a_ 287 TLRRLVVGGSAAPRSLIARFER-MG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA 362 (534)
T ss_dssp SCCEEEECSSCCCHHHHHHHHH-TT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEE
T ss_pred ceeEEEEecCCCCHHHHHHHHH-hC---CeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEE
Confidence 9999999999999999998875 44 689999999999987764432210 1234689999999999999
Q ss_pred CCCCcccCC--CceEEEEEecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEee
Q 004348 581 DEKGVEIEG--ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRI 639 (759)
Q Consensus 581 D~~g~~vp~--g~~GEL~I~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI 639 (759)
|+++++++. |+.|||+|+| |+++.|||++++.+...|.. +|||+|||+|+ +|+||
T Consensus 363 d~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~~~~--dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v 438 (534)
T d1v25a_ 363 DEEGRPVPKDGKALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI 438 (534)
T ss_dssp CTTSCBCCSSSCCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEE
T ss_pred CCCCCCCCCCCCeeEEEEEcC--CcccceecCChhhhhhhccc--CCCCccCceeEECCCccEEEecccccEEEECCEEE
Confidence 999999986 6799999999 89999999999999888754 78999999998 79999
Q ss_pred CHHHHHHHHhcCCccceEEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCC
Q 004348 640 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 719 (759)
Q Consensus 640 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~ 719 (759)
+|.|||++|.+||+|.||+|++++++..++.++|||+++++.... .+.++..++++||+|++|+.|+++++||+|++
T Consensus 439 ~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~---~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~ 515 (534)
T d1v25a_ 439 SSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP---EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSA 515 (534)
T ss_dssp EHHHHHCC----------CEEEEECSSSSEEEEECC----------------------CCCTTTSCSBC-----------
T ss_pred CHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCH---HHHHHHHHHhcCCcCCCccEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999987654332 22334457889999999999999999999999
Q ss_pred CcccHHHHHHHHhc
Q 004348 720 GKIMRRILRKIASR 733 (759)
Q Consensus 720 GKvdR~~L~~~~~~ 733 (759)
|||||++||+++..
T Consensus 516 GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 516 GKFLKRALREQYKN 529 (534)
T ss_dssp ---CCTTHHHHSTT
T ss_pred ccccHHHHHHHHHh
Confidence 99999999998864
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=4e-67 Score=597.39 Aligned_cols=462 Identities=21% Similarity=0.250 Sum_probs=384.5
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++|+ ++||++|++++ ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 24 tl~~l~~~~a~-~~Pd~~Al~~~------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~ 96 (514)
T d1amua_ 24 TIHQLFEEQVS-KRPNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 96 (514)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-hCCCCeEEEEC------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 79999999999 89999999987 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.+++++++++++|++.... +. +... .............
T Consensus 97 G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~----~~~~----~~~~~~~~~~~~~--------- 150 (514)
T d1amua_ 97 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------HL----IHNI----QFNGQVEIFEEDT--------- 150 (514)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HH----HTTS----CCCSEEEECCCST---------
T ss_pred CcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhh---------hh----hhhh----ccccccccccccc---------
Confidence 99999999999999999999999999999987542 11 1110 1111111111000
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
...........+..++++++|+|||||||.||+|+++|.++ ..........+.+.++|++++..++.|
T Consensus 151 -----------~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~-~~~~~~~~~~~~~~~~d~~l~~~p~~~ 218 (514)
T d1amua_ 151 -----------IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI-SNLKVFFENSLNVTEKDRIGQFASISF 218 (514)
T ss_dssp -----------TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHH-HHHHHHHHHTSCCCTTCEEEECSCTTS
T ss_pred -----------ccccccccCCCCCCcccceEEEEccCCCCCccccccccccc-ccccccccccccccccccccceecccc
Confidence 00011112223456889999999999999999999999994 455666677789999999999999999
Q ss_pred hchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCCC
Q 004348 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (759)
Q Consensus 441 ~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (759)
..+ .+.++.+++.|+++++..... ..+...+++.+..+.++.+..+|+..... ...+++++|.+++||++
T Consensus 219 ~~~-~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~G~~ 288 (514)
T d1amua_ 219 DAS-VWEMFMALLTGASLYIILKDT-INDFVKFEQYINQKEITVITLPPTYVVHL--------DPERILSIQTLITAGSA 288 (514)
T ss_dssp THH-HHHHHHHHTTTCEEEECCHHH-HTCHHHHHHHHHHTTCCEEEECHHHHTTS--------CTTTCCSCSEEEEESSC
T ss_pred ccc-ccccccccccccccccccccc-ccchhhhhhhhhhhhcccccceeeecccc--------cccccccccEEEEeccc
Confidence 988 467888899999998875422 23678889999999999999999865432 23468999999999999
Q ss_pred CCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCC-CCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEEec
Q 004348 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (759)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I~g 599 (759)
+++++.+++.+ ++.+++.||+||++.+.+...... .....++.|.++++..+.+.|+++++++.|+.|||+|+|
T Consensus 289 ~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~ 363 (514)
T d1amua_ 289 TSPSLVNKWKE-----KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 363 (514)
T ss_dssp CCHHHHHHHTT-----TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHhhhhcc-----ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEcc
Confidence 99999987766 378999999999998765443322 233456789999999999999999999999999999999
Q ss_pred CCCcccccccCChhhHHhhhc----ccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccce
Q 004348 600 SWPGAFRTLYGDHERYETTYF----KPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAE 656 (759)
Q Consensus 600 ~~~~v~~GY~~~~e~~~~~~~----~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~e 656 (759)
|.++.|||++++.+...|. .+.+|||+|||+|+ +|++|+|.+||++|.+||+|.|
T Consensus 364 --~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~ 441 (514)
T d1amua_ 364 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 441 (514)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred --CcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccE
Confidence 8999999999998887764 44578999999998 7999999999999999999999
Q ss_pred EEEEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCccccEEEEeCCCCCCCCCcccHHHHHH
Q 004348 657 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 729 (759)
Q Consensus 657 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~ 729 (759)
|+|++.+++..++.++|+|+++++.+ .++|+++++++|++|++|..|+++++||+|++|||+|++||+
T Consensus 442 ~~V~~~~~~~~g~~~~a~v~~~~~~~-----~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 442 TAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred EEEEEEECCCCCEEEEEEEEcCCCCC-----HHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 99999999999999999999987654 578999999999999999999999999999999999999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.3e-66 Score=595.59 Aligned_cols=485 Identities=21% Similarity=0.282 Sum_probs=395.8
Q ss_pred HHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHHh
Q 004348 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (759)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~ka 280 (759)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 98 (536)
T d1mdba_ 26 TFGDLLRDRAA-KYGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (536)
T ss_dssp CHHHHHHHHHH-HHTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCCeEEEEC------CEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 68999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCcccccccccc
Q 004348 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (759)
Q Consensus 281 Gav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (759)
|++++|++|.++.+++.++|++++++++++++..... ............. +.+...+......
T Consensus 99 G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (536)
T d1mdba_ 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF----DYRSLARQVQSKL----PTLKNIIVAGEAE--------- 161 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTE----EHHHHHHHHHHHC----TTCCCEEEESCCT---------
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhh----hhhhhhhhhhhcc----ccccceeeeeccc---------
Confidence 9999999999999999999999999999998754321 1111111112221 3333333222111
Q ss_pred CCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHhCCCCCcEEEEecCcch
Q 004348 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (759)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~~l~~~d~~l~~~~l~~ 440 (759)
....+.+.. ..........++|+++|+|||||||.||||+++|++++ ..+......+++.++|++++..++.|
T Consensus 162 ---~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~-~~~~~~~~~~~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 162 ---EFLPLEDLH---TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI-YSLKRSVEVCWLDHSTVYLAALPMAH 234 (536)
T ss_dssp ---TSEEGGGCC---CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHH-HHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ---cccchhhcc---cCCcCCCccCccchHHhhhcccccccceeccccccccc-cccccccccccccccccccccccccc
Confidence 011111111 12223345678999999999999999999999999954 45566777899999999999999999
Q ss_pred hchhhHHHHHHhhc-CcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEeCC
Q 004348 441 ITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (759)
Q Consensus 441 ~~g~~~~~~~~L~~-G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (759)
.+++...++..++. |.+++..+. +++..++..+++++++.+..+|..+..+..... .....++++|.+++||+
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~ 308 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred ccceeeccccccccccccccccCC----CCHHHHHHHHhhhccccccccchhhhhhhhhcc--ccccccCcceeEEEecc
Confidence 88865444444544 555555432 589999999999999999999999988876643 23456789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCC-CceEEEECCCCcccCCCceEEEEEe
Q 004348 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIEGECSGYLCIK 598 (759)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~-g~~~~IvD~~g~~vp~g~~GEL~I~ 598 (759)
++++.+.+++.+.++ ......|+.+|.+....... .......+++|+|++ +..+.|.++++++++.|+.|||+|+
T Consensus 309 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~ 384 (536)
T d1mdba_ 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTRLD-DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (536)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred ccccccccchhhccC---ceeeeccccccccccccccc-cccccccCCcccCCCCcceEEEEcCCCCeecccccceeecC
Confidence 999999999999997 67888888888776544322 112234578999986 5567778889999999999999999
Q ss_pred cCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEEE
Q 004348 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAAV 659 (759)
Q Consensus 599 g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~V 659 (759)
| +.+++||+++++.+...+.. +|||+|||+++ +|+||+|.|||++|.+||+|.+|+|
T Consensus 385 g--~~~~~gY~~~~~~~~~~~~~--~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~v 460 (536)
T d1mdba_ 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (536)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred C--Cccccccccccccccccccc--cCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence 9 89999999999887776654 78999999988 8999999999999999999999999
Q ss_pred EeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHHhh-cCCCccccEEEEeCCCCCCCCCcccHHHHHHHHhcc
Q 004348 660 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 734 (759)
Q Consensus 660 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~~~~ 734 (759)
++++++..++.++|||+++++... .++|+++|+++ ||+|++|+.|+++++||+|++|||||++|+++++++
T Consensus 461 vg~~~~~~g~~~~a~v~~~~~~~~----~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (536)
T d1mdba_ 461 VSMPDQFLGERSCVFIIPRDEAPK----AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (536)
T ss_dssp EEEEETTTEEEEEEEEEESSSCCC----HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEEEcCCCCeEEEEEEEECCCCCC----HHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHH
Confidence 999999889999999999876543 46788889875 999999999999999999999999999999998765
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=3.8e-63 Score=560.31 Aligned_cols=479 Identities=20% Similarity=0.199 Sum_probs=388.5
Q ss_pred cHHHHHHhhcccccCCCeEEEEEEcCCCCcceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCChHHHHHHHHHHH
Q 004348 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (759)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~e~iva~LA~~k 279 (759)
++++++|+++++ ++||++|+++.+ .++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 2 ~ti~~~l~~~a~-~~pd~~al~~~~----~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (503)
T d3cw9a1 2 QTVNEMLRRAAT-RAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHR 76 (503)
T ss_dssp CCHHHHHHHHHH-HSTTSEEEEEGG----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-hCCCCeEEEECC----CCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 579999999999 899999999873 367899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEeccCccccccccc
Q 004348 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (759)
Q Consensus 280 aGav~vpldp~~~~~~l~~il~~~~~~~iit~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (759)
+|++++|++|.++++++++++++++++++|++... . ....+... .....++.+.+...
T Consensus 77 ~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~----------~-~~~~~~~~----~~~~~~i~~~~~~~------- 134 (503)
T d3cw9a1 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR----------Q-VADAIFQS----GSGARIIFLGDLVR------- 134 (503)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCH----------H-HHHHHHHT----TCCCEEEEHHHHEE-------
T ss_pred hCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecch----------H-HHHHHhhh----ccccccccchhhhh-------
Confidence 99999999999999999999999999999987652 1 11122111 23334444332110
Q ss_pred cCCCCccchhhhcCCCCCCCCccccCCCCcEEEEeccCCCCCCcEEEEccchHHHHHHHHHHHHh--CCCCCcEEEEecC
Q 004348 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF--DYKPSDVYWCTAD 437 (759)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~IiyTSGSTG~PKgV~~th~~~l~~~~~~~~~~~--~l~~~d~~l~~~~ 437 (759)
+...............+++++++|+|||||||.||+|+++|++++.+ .......+ .....++++..+|
T Consensus 135 ---------~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p 204 (503)
T d3cw9a1 135 ---------DGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESR-VLFMSTQVGLRHGRHNVVLGLMP 204 (503)
T ss_dssp ---------TTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHH-HHHHHHTSCCCSSTTCEEEECSC
T ss_pred ---------hhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhh-hhhccccccccccccccccccCc
Confidence 00001111222333567899999999999999999999999995544 44444333 3455688999999
Q ss_pred cchhchhhHHHHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEehHHHHHHHHhcCCcccccCCCCCeeEEEEe
Q 004348 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (759)
Q Consensus 438 l~~~~g~~~~~~~~L~~G~tlvl~~~~~~~~d~~~l~~~i~~~~vT~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (759)
+.|..+.....+.+...++++++.+. .++..++.++.+++++++..+|+.+..+............+++||.+++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~g 280 (503)
T d3cw9a1 205 LYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280 (503)
T ss_dssp TTSHHHHHTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEEC
T ss_pred cccccccccccccccccccccccccc----cChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEec
Confidence 98877766666777788888887654 48999999999999999999999988877654333445567899999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccEeeeeccccccceecccCCCCCCCCCCCcCCCCCCceEEEECCCCcccCCCceEEEEE
Q 004348 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCI 597 (759)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~g~~~~IvD~~g~~vp~g~~GEL~I 597 (759)
||+++++.+.++...++ ..+.+.||.||++..+....... ....+.+.+.+.....+.+..++.++.|+.|++.+
T Consensus 281 G~~~~~~~~~~~~~~~~---~~~~~~yg~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~ 355 (503)
T d3cw9a1 281 GATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLYMRQPKT--GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIV 355 (503)
T ss_dssp SSCCCHHHHHHHHHHCC---SEEEEEEEETTTEEEEEEESCSS--SSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEE
T ss_pred ccccccccccccccccc---ccccccccccccceeeeeccccc--cccccccccccceeeeeecccCcccCCCccccccc
Confidence 99999999999999887 67999999999987665433322 23334455555666666777899999999999888
Q ss_pred ecCCCcccccccCChhhHHhhhcccCCcEEEeCCeee-------------------ccEeeCHHHHHHHHhcCCccceEE
Q 004348 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS-------------------SGHRIGTAEVESALVSHPQCAEAA 658 (759)
Q Consensus 598 ~g~~~~v~~GY~~~~e~~~~~~~~~~~g~y~TGDl~~-------------------~G~rI~~~eIE~~L~~~p~V~ea~ 658 (759)
.+. +....+|+++++.+.+.| .+|||+|||+|+ +|+||+|.|||++|.+||+|.||+
T Consensus 356 ~~~-~~~~~~~~~~~~~t~~~~---~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~ 431 (503)
T d3cw9a1 356 AAS-DSAFVGYLNQPQATAEKL---QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431 (503)
T ss_dssp ECC-TTSCCCBTTCHHHHHHHE---ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEE
T ss_pred ccc-ccccccccCChhhhHHHh---cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEE
Confidence 875 567788999999888766 379999999998 899999999999999999999999
Q ss_pred EEeEecCCCCeEEEEEEEEcCCCCCcHHHHHHHHHHHH-hhcCCCccccEEEEeCCCCCCCCCcccHHHHHHHH
Q 004348 659 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVR-KQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 731 (759)
Q Consensus 659 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~-~~Lp~~~vP~~iv~v~~lP~T~~GKvdR~~L~~~~ 731 (759)
|++.+++..++.++|||+++++...+ .++|+++++ ++||+|++|+.|+++++||+|++|||+|++|++.+
T Consensus 432 v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 432 VIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred EEEEECCCCCeEEEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 99999998899999999998776655 578888895 67999999999999999999999999999999875
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=92.58 E-value=0.003 Score=61.23 Aligned_cols=58 Identities=7% Similarity=-0.023 Sum_probs=49.1
Q ss_pred CcchhhhhhhccccccCCCcccCCChhhhhccCCCChhHHHHHHHHHhhChHHHHHHhh
Q 004348 106 KISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (759)
Q Consensus 106 ~fdl~~~~~~~~~~~~~~~~~~y~~~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~l~ 164 (759)
.+||.+.+...+ ++.+..++.|++++|+++++.+++++|..+|++++++|+++++++.
T Consensus 185 ~~dl~l~v~~~~-~~~l~l~~~y~~~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l~ 242 (250)
T d1l5aa2 185 AEGINFTFRGSP-QHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVA 242 (250)
T ss_dssp CCSEEEEEEECT-TSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred eeeEEEEEEEcC-CceEEEEEEEehhhCCHHHHHHHHHHHHHHHHHHHhCcCcccchhh
Confidence 456666655332 4567889999999999999999999999999999999999998885
|