Citrus Sinensis ID: 004360

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76
MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
cHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccEEEEEEEEEcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHEHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccc
cHHHHccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEcEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccccccccccccccccccEEEcHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccc
MEELFDTINVRdllsthdltdqtapltapDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLrvgdenaseplVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVispavsygspitfveelnpgpekMSEAILRMVpsvddkienvdgktiySGIIQVVKFIHKRIclqngswvrcfgrltwpRISELIISNFlskvvpedasklADFQKIIDHTSEFEAALKEMMFIsasdnkdarlSNFAENVEVHFASRKKTEILAKARNLLLQcdfavpqestgkdpickndgmavdsseHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFeyhsdfpssikehAVFADMAPRFHLMAEEILQRQIQIVIFNLRealdgadgfqnthQIQQFESAKFSIEQVVFILEKVHIiweplllpstynrsMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQkgktegdfarplddlipSLCKFRKLAELLDMPLRSITAAWEsgellscgfTLSEIEDFIKAIFADSTLRKECLWRIENVPL
MEELFDTINVRdllsthdltdqtaplTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTdeistdlsdilglisyrpidkeVKEIIDEVSAKMKEARVKKELLELVRAIVeigerlkgvkealrdgrLRFAAEELRElkkdlrvgdenaseplVYGLLRKEWLVCFEEIQELLVKFVESAVRfekesnrvlvkyqltvdgldGIELRTVLEAMEVVGILDYGLAKVADLKIKYVIspavsygspITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGktegdfarplddLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHlmlenlsslleslAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
****FDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD*NASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEEL*********AILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISA******RLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQ******PICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE****
**ELFDTINVRDL*****************LRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSL**************************************SAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRV***********DGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEEL*****************************IYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFA************************VVDLLFMSERCVVTKAASQLMKLVHQIL**************YHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQ********ESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLL*****************RPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENV**
MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
**ELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQE*****************SEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVN****TEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENV**
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MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIxxxxxxxxxxxxxxxxxxxxxRAIVEIGERLKGVKEALRDGRxxxxxxxxxxxxxxxxxxxxxASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query759 2.2.26 [Sep-21-2011]
O48626742 Centromere/kinetochore pr yes no 0.971 0.993 0.647 0.0
Q5RFM4779 Centromere/kinetochore pr yes no 0.930 0.906 0.234 5e-43
O43264779 Centromere/kinetochore pr yes no 0.928 0.905 0.235 1e-42
Q4V8C2777 Centromere/kinetochore pr yes no 0.940 0.918 0.235 3e-42
O54692779 Centromere/kinetochore pr yes no 0.930 0.906 0.225 5e-42
O44218718 Centromere/kinetochore pr yes no 0.503 0.532 0.227 1e-13
Q9W4X9721 Centromere/kinetochore pr yes no 0.495 0.521 0.220 8e-13
O44219714 Centromere/kinetochore pr N/A no 0.544 0.578 0.218 1e-10
>sp|O48626|ZW10_ARATH Centromere/kinetochore protein zw10 homolog OS=Arabidopsis thaliana GN=ZW10 PE=2 SV=1 Back     alignment and function desciption
 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/757 (64%), Positives = 615/757 (81%), Gaps = 20/757 (2%)

Query: 1   MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDF 60
           ++ LF++INVRDLL+ HDL D T PL+APDLRLLI+RLE HSL+IKSKVQSY+ +HH DF
Sbjct: 4   IDALFESINVRDLLAGHDLNDPTTPLSAPDLRLLINRLESHSLRIKSKVQSYLVAHHSDF 63

Query: 61  ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL 120
           + LFSLC DTVSRT  IS D+SD+L L+S RPID E++ ++DE++ K KE ++K+E L+L
Sbjct: 64  SELFSLCQDTVSRTRLISDDVSDVLQLVSDRPIDVEIRSVVDEITEKTKEVKLKRESLDL 123

Query: 121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVC 180
           V AIV I E L+  KEAL++GR RFAAE +RELK  LR+G+E   EP+ Y LLRKEW  C
Sbjct: 124 VNAIVGICEALQETKEALKNGRFRFAAERIRELKVVLRIGEEEDGEPVAYALLRKEWSNC 183

Query: 181 FEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAK 240
           F+EIQE+L KF+E+AVRFE +S+R+ +KYQL+V    GI L TVLEAMEV+GILDYGLAK
Sbjct: 184 FDEIQEVLAKFMENAVRFELDSSRIRIKYQLSVGETAGIALSTVLEAMEVIGILDYGLAK 243

Query: 241 VADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGI 300
            AD   K+VI+PAV++ S    VE+L     +++EA LR+  S D K E+VDG  +YSGI
Sbjct: 244 AADSIFKHVITPAVTHASTFAAVEDLCKSAGEVTEATLRLEQSSDHKFEDVDGDAMYSGI 303

Query: 301 IQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHT 360
           ++VVKFI   +C  N +W+  FGRLTWPRISELIIS FLSKVVPEDASKLADFQKII+ T
Sbjct: 304 LKVVKFICSSLCFGNVTWIHSFGRLTWPRISELIISKFLSKVVPEDASKLADFQKIIERT 363

Query: 361 SEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQE 420
           S+FEAALKE+ F+S+SD  ++RLS +AE+VEVHFASRKK EILAKARNLLLQC+F +PQ+
Sbjct: 364 SQFEAALKELNFVSSSD-AESRLSKYAEDVEVHFASRKKIEILAKARNLLLQCNFTIPQD 422

Query: 421 STGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAF 480
                       +A+ +++H+V LLF SERCVV++AASQLM LVH+ L+D+C+SS RVA 
Sbjct: 423 ------------IAMRNAKHIVCLLFSSERCVVSEAASQLMNLVHKTLEDVCVSSARVAS 470

Query: 481 EFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSS 540
           EFY+AARD+ILLYEA+VPVKLE+QL+G+N+ AVL+HNDCLYL +EILG AFEY + FPSS
Sbjct: 471 EFYNAARDSILLYEAVVPVKLEKQLDGLNEAAVLLHNDCLYLFEEILGLAFEYRASFPSS 530

Query: 541 IKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIE 600
           IKE+AVFAD+APRF LMAEE+LQ+Q+ +VI +LREA+D ADGFQNTHQI+QF+SA+FSI+
Sbjct: 531 IKEYAVFADIAPRFKLMAEEVLQKQVHLVISSLREAIDSADGFQNTHQIKQFKSAEFSID 590

Query: 601 QVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIH 660
           QVVF L+ VH+IWEP+L P TY +SMC VLESVF RI RDILLLDDMAA+ET +LQ+LI+
Sbjct: 591 QVVFSLKNVHMIWEPVLRPKTYKQSMCAVLESVFRRIARDILLLDDMAADETFELQKLIY 650

Query: 661 LMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWES 720
           LML+NLSS+L+S+ + ++        +RPLDD+IPSL K RKLAELLDMPL SIT+AWES
Sbjct: 651 LMLKNLSSVLDSVRSADET-------SRPLDDIIPSLRKTRKLAELLDMPLMSITSAWES 703

Query: 721 GELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENV 757
           GEL  C FT +E++DFIKAIF DS LRKECLWRI+ V
Sbjct: 704 GELFRCNFTRTEVQDFIKAIFTDSPLRKECLWRIDEV 740
May be required for accurate chromosome segregation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5RFM4|ZW10_PONAB Centromere/kinetochore protein zw10 homolog OS=Pongo abelii GN=ZW10 PE=2 SV=3 Back     alignment and function description
>sp|O43264|ZW10_HUMAN Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3 Back     alignment and function description
>sp|Q4V8C2|ZW10_RAT Centromere/kinetochore protein zw10 homolog OS=Rattus norvegicus GN=Zw10 PE=2 SV=3 Back     alignment and function description
>sp|O54692|ZW10_MOUSE Centromere/kinetochore protein zw10 homolog OS=Mus musculus GN=Zw10 PE=2 SV=3 Back     alignment and function description
>sp|O44218|ZW10_DROPS Centromere/kinetochore protein zw10 OS=Drosophila pseudoobscura pseudoobscura GN=mit(1)15 PE=3 SV=2 Back     alignment and function description
>sp|Q9W4X9|ZW10_DROME Centromere/kinetochore protein zw10 OS=Drosophila melanogaster GN=mit(1)15 PE=1 SV=2 Back     alignment and function description
>sp|O44219|ZW10_DROGR Centromere/kinetochore protein zw10 OS=Drosophila grimshawi GN=mit(1)15 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query759
224064880767 predicted protein [Populus trichocarpa] 0.998 0.988 0.714 0.0
357493103752 Centromere/kinetochore protein zw10-like 0.986 0.996 0.697 0.0
225447178744 PREDICTED: centromere/kinetochore protei 0.976 0.995 0.716 0.0
356501253742 PREDICTED: centromere/kinetochore protei 0.976 0.998 0.696 0.0
356553727742 PREDICTED: centromere/kinetochore protei 0.973 0.995 0.699 0.0
449450964760 PREDICTED: centromere/kinetochore protei 0.994 0.993 0.669 0.0
449517435760 PREDICTED: centromere/kinetochore protei 0.994 0.993 0.668 0.0
30685491742 centromere/kinetochore protein ZW10 [Ara 0.971 0.993 0.647 0.0
26450896742 unknown protein [Arabidopsis thaliana] 0.971 0.993 0.645 0.0
297823079741 ATZW10 [Arabidopsis lyrata subsp. lyrata 0.967 0.990 0.663 0.0
>gi|224064880|ref|XP_002301597.1| predicted protein [Populus trichocarpa] gi|222843323|gb|EEE80870.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/768 (71%), Positives = 647/768 (84%), Gaps = 10/768 (1%)

Query: 1   MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDF 60
           M+ LFD INVRDLLST DL D TAPL+APDLRLLI+RLE HSLQIKSKV+SYI +HH DF
Sbjct: 1   MDALFDAINVRDLLSTSDLRDPTAPLSAPDLRLLITRLESHSLQIKSKVKSYILAHHSDF 60

Query: 61  ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL 120
           +SLFSLCND VSRTD+I+  L D+L L+S  PID E++EI++E+S KMKEAR K+E+L+L
Sbjct: 61  SSLFSLCNDAVSRTDQINQCLLDLLALVSDSPIDGEIREIVEELSGKMKEAREKREILDL 120

Query: 121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVC 180
           VR IV I ERL G+KE +++GRLR AA ++R+LKK LR+GDE   EP+VYGLLRKEWL C
Sbjct: 121 VRIIVGISERLGGIKEGVKNGRLRLAAVDIRDLKKVLRIGDEEEREPVVYGLLRKEWLDC 180

Query: 181 FEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGI-ELRTVLEAMEVVGILDYGLA 239
           FEEIQE+LVKFVE+AV+FE +S+ V VKY+L+VDG+ G+ +L +VL++MEV+GILDYG A
Sbjct: 181 FEEIQEMLVKFVENAVQFEPDSSIVRVKYRLSVDGIAGVVDLHSVLDSMEVIGILDYGFA 240

Query: 240 KVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSG 299
           KVAD  IK+VI P V  GS I+ +E+L    ++M+EAIL+++ S  + + +VDG+ IYS 
Sbjct: 241 KVADQMIKHVIIPVVKKGSSISSMEDLKDVSKEMTEAILKIL-STSNPMVDVDGEIIYSR 299

Query: 300 IIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDH 359
           IIQV+ F+ K IC +N SW+RCFGRLTWPRISEL+ISNFLSK VPEDASKLA FQKII  
Sbjct: 300 IIQVINFVCKCICFENPSWIRCFGRLTWPRISELVISNFLSKAVPEDASKLAGFQKIIKD 359

Query: 360 TSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQ 419
           T EFE ALKEM FISASD+ D +LSNFAENVE+HFASRKK EILAKARNLLLQCDF +PQ
Sbjct: 360 TYEFETALKEMAFISASDSTDQKLSNFAENVELHFASRKKIEILAKARNLLLQCDFTIPQ 419

Query: 420 ESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVA 479
           E T K    KN G AV+  EHVVDLLF+SERC+V+KAA+QLM LVHQ L+DICLSS RVA
Sbjct: 420 EYTRKGHPMKNSGTAVNYYEHVVDLLFLSERCLVSKAATQLMDLVHQTLKDICLSSPRVA 479

Query: 480 FEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPS 539
            EFYHAARDAILLYEA+VPVKLERQL+G+NQVAVLMHNDC YLSQEILG AFEY SDFP 
Sbjct: 480 LEFYHAARDAILLYEAVVPVKLERQLDGVNQVAVLMHNDCFYLSQEILGLAFEYRSDFPI 539

Query: 540 SIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSI 599
           SIKEHAVF D+APRF +MAEEILQRQIQ+VI NL+EA+DGADGFQNTHQ+QQFESAKFSI
Sbjct: 540 SIKEHAVFVDLAPRFQVMAEEILQRQIQLVISNLKEAIDGADGFQNTHQVQQFESAKFSI 599

Query: 600 EQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLI 659
           +QVVFILEKVHIIWEPLLLPSTY +S+C VLESVF+R+T+DILLLDDMAAEETLQLQRLI
Sbjct: 600 DQVVFILEKVHIIWEPLLLPSTYKKSLCMVLESVFARVTKDILLLDDMAAEETLQLQRLI 659

Query: 660 HLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLA--------ELLDMPL 711
           HLMLE++SSL+ESL+ V QK + E      +DDLIPSL K RK+A        +LLDMPL
Sbjct: 660 HLMLESISSLMESLSTVIQKERPEEYHTSLVDDLIPSLRKIRKVAGKFSVCQSKLLDMPL 719

Query: 712 RSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL 759
           +SIT AWESGEL+S GFT+ E++DFIKAIF DS LRKECLWRIENV L
Sbjct: 720 KSITTAWESGELISIGFTMLEVKDFIKAIFTDSPLRKECLWRIENVGL 767

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357493103|ref|XP_003616840.1| Centromere/kinetochore protein zw10-like protein [Medicago truncatula] gi|355518175|gb|AES99798.1| Centromere/kinetochore protein zw10-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225447178|ref|XP_002276594.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501253|ref|XP_003519440.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356553727|ref|XP_003545204.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449450964|ref|XP_004143232.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517435|ref|XP_004165751.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|30685491|ref|NP_565757.2| centromere/kinetochore protein ZW10 [Arabidopsis thaliana] gi|12643613|sp|O48626.1|ZW10_ARATH RecName: Full=Centromere/kinetochore protein zw10 homolog gi|2661179|gb|AAB88246.1| AtZW10 [Arabidopsis thaliana] gi|17978942|gb|AAL47437.1| At2g32900/T21L14.16 [Arabidopsis thaliana] gi|330253665|gb|AEC08759.1| centromere/kinetochore protein ZW10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26450896|dbj|BAC42555.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823079|ref|XP_002879422.1| ATZW10 [Arabidopsis lyrata subsp. lyrata] gi|297325261|gb|EFH55681.1| ATZW10 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query759
TAIR|locus:2059412742 ATZW10 [Arabidopsis thaliana ( 0.852 0.871 0.646 1.2e-225
UNIPROTKB|F1NVT0753 ZW10 "Uncharacterized protein" 0.437 0.440 0.219 6.3e-41
UNIPROTKB|F1N958779 ZW10 "Uncharacterized protein" 0.437 0.426 0.221 3.4e-40
ZFIN|ZDB-GENE-040426-800771 zw10 "ZW10 homolog, centromere 0.490 0.482 0.243 9.8e-40
UNIPROTKB|F6UZG3779 ZW10 "Uncharacterized protein" 0.403 0.392 0.243 1e-39
UNIPROTKB|O43264779 ZW10 "Centromere/kinetochore p 0.403 0.392 0.237 5.6e-39
UNIPROTKB|E2QSG4785 ZW10 "Uncharacterized protein" 0.407 0.393 0.240 1.4e-38
UNIPROTKB|Q0P5L6779 ZW10 "Uncharacterized protein" 0.403 0.392 0.233 1.7e-37
RGD|1309197777 Zw10 "zw10 kinetochore protein 0.403 0.393 0.240 2.2e-36
MGI|MGI:1349478779 Zw10 "zw10 kinetochore protein 0.403 0.392 0.237 4e-36
TAIR|locus:2059412 ATZW10 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2178 (771.8 bits), Expect = 1.2e-225, P = 1.2e-225
 Identities = 427/660 (64%), Positives = 538/660 (81%)

Query:     1 MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDF 60
             ++ LF++INVRDLL+ HDL D T PL+APDLRLLI+RLE HSL+IKSKVQSY+ +HH DF
Sbjct:     4 IDALFESINVRDLLAGHDLNDPTTPLSAPDLRLLINRLESHSLRIKSKVQSYLVAHHSDF 63

Query:    61 ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL 120
             + LFSLC DTVSRT  IS D+SD+L L+S RPID E++ ++DE++ K KE ++K+E L+L
Sbjct:    64 SELFSLCQDTVSRTRLISDDVSDVLQLVSDRPIDVEIRSVVDEITEKTKEVKLKRESLDL 123

Query:   121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVC 180
             V AIV I E L+  KEAL++GR RFAAE +RELK  LR+G+E   EP+ Y LLRKEW  C
Sbjct:   124 VNAIVGICEALQETKEALKNGRFRFAAERIRELKVVLRIGEEEDGEPVAYALLRKEWSNC 183

Query:   181 FEEIQELLVKFVESAVRFEKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAK 240
             F+EIQE+L KF+E+AVRFE +S+R+ +KYQL+V    GI L TVLEAMEV+GILDYGLAK
Sbjct:   184 FDEIQEVLAKFMENAVRFELDSSRIRIKYQLSVGETAGIALSTVLEAMEVIGILDYGLAK 243

Query:   241 VADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGI 300
              AD   K+VI+PAV++ S    VE+L     +++EA LR+  S D K E+VDG  +YSGI
Sbjct:   244 AADSIFKHVITPAVTHASTFAAVEDLCKSAGEVTEATLRLEQSSDHKFEDVDGDAMYSGI 303

Query:   301 IQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHT 360
             ++VVKFI   +C  N +W+  FGRLTWPRISELIIS FLSKVVPEDASKLADFQKII+ T
Sbjct:   304 LKVVKFICSSLCFGNVTWIHSFGRLTWPRISELIISKFLSKVVPEDASKLADFQKIIERT 363

Query:   361 SEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQE 420
             S+FEAALKE+ F+S+SD  ++RLS +AE+VEVHFASRKK EILAKARNLLLQC+F +PQ+
Sbjct:   364 SQFEAALKELNFVSSSD-AESRLSKYAEDVEVHFASRKKIEILAKARNLLLQCNFTIPQD 422

Query:   421 STGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAF 480
                         +A+ +++H+V LLF SERCVV++AASQLM LVH+ L+D+C+SS RVA 
Sbjct:   423 ------------IAMRNAKHIVCLLFSSERCVVSEAASQLMNLVHKTLEDVCVSSARVAS 470

Query:   481 EFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSS 540
             EFY+AARD+ILLYEA+VPVKLE+QL+G+N+ AVL+HNDCLYL +EILG AFEY + FPSS
Sbjct:   471 EFYNAARDSILLYEAVVPVKLEKQLDGLNEAAVLLHNDCLYLFEEILGLAFEYRASFPSS 530

Query:   541 IKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIE 600
             IKE+AVFAD+APRF LMAEE+LQ+Q+ +VI +LREA+D ADGFQNTHQI+QF+SA+FSI+
Sbjct:   531 IKEYAVFADIAPRFKLMAEEVLQKQVHLVISSLREAIDSADGFQNTHQIKQFKSAEFSID 590

Query:   601 QVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIH 660
             QVVF L+ VH+IWEP+L P TY +SMC VLESVF RI RDILLLDDMAA+ET +LQ+LI+
Sbjct:   591 QVVFSLKNVHMIWEPVLRPKTYKQSMCAVLESVFRRIARDILLLDDMAADETFELQKLIY 650
GO:0000775 "chromosome, centromeric region" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0007067 "mitosis" evidence=IEA
GO:0007059 "chromosome segregation" evidence=ISS
UNIPROTKB|F1NVT0 ZW10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N958 ZW10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-800 zw10 "ZW10 homolog, centromere/kinetochore protein (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6UZG3 ZW10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O43264 ZW10 "Centromere/kinetochore protein zw10 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSG4 ZW10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5L6 ZW10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309197 Zw10 "zw10 kinetochore protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1349478 Zw10 "zw10 kinetochore protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48626ZW10_ARATHNo assigned EC number0.64720.97100.9932yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query759
pfam06248593 pfam06248, Zw10, Centromere/kinetochore Zw10 1e-134
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10 Back     alignment and domain information 
 Score =  409 bits (1052), Expect = e-134
 Identities = 161/593 (27%), Positives = 278/593 (46%), Gaps = 34/593 (5%)

Query: 26  LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDIL 85
           L   DLR  IS+L     + K +V+  I   + DF    S   D + +   +S D+SD+L
Sbjct: 7   LEKEDLRGKISKLLSKVEEYKEEVRDMINKKYSDFLPNMSSAEDLLEQVSSLSEDISDLL 66

Query: 86  GLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRF 145
                  I +++ + ++E++   ++   K   L++++ +++I E L+   EAL       
Sbjct: 67  KSEVSNEILQDLNDAVEELAELKRQLEEKILGLKILQKLLKIHEALEETNEALSGKDYLK 126

Query: 146 AAEELRELKKDLRVGDENA-SEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKES-- 202
           AA+ L + K  L         E  +Y  LR E+ V  + +   L +  +  V+++  S  
Sbjct: 127 AADLLEKAKSLLDGLKSRKGEELEIYKSLRLEYTVQSQNLLYHLGEEWDRLVQWKLPSSK 186

Query: 203 ------NRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSY 256
                 N       L+ D     EL +VL+A+ V+G L+Y L K     +K V  P +  
Sbjct: 187 ELGSAQNTKKTTLHLSKDE-SQGELSSVLQALAVLGELEYKLKKFCQFLLKNVFEPLIVK 245

Query: 257 GSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNG 316
              +  VE+     +   +  L        K+   D K ++S I  V+K + K +   + 
Sbjct: 246 PVLVVCVEDQ---KDGTVQITLSYESK-TTKLLRPDPKKVFSKIRLVLKTLSKMLLSVSV 301

Query: 317 SWVRCF---GRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFI 373
                F   G L W R+SEL+I + L K +PE +S+L ++ ++I+ T EFEAALKEM F+
Sbjct: 302 DDCSLFEILGDLIWERLSELLIKDCLVKSIPETSSELQEYSEVIEDTEEFEAALKEMNFL 361

Query: 374 SASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDF--------------AVPQ 419
              D  D  L  +A +V  HFA++K  ++L  ARNL+                    +P 
Sbjct: 362 D-GDATD--LLKYARDVNTHFANKKCQDVLVTARNLMTSDLHNTVLVTPDSKVVKPKLPS 418

Query: 420 ESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVA 479
                    K++ + +++ +H+  L F   RC V+++   LMKL ++ L +   SS   A
Sbjct: 419 SKAETKAQAKSERLWLENEKHLSCLSFSFPRCRVSESVQDLMKLAYKTLSEATTSSEGCA 478

Query: 480 FEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPS 539
            + ++  R+   LY  +VP   ++ L  I Q++ L HN+C+YLS  +L    ++ ++ PS
Sbjct: 479 DQLFYTVRNIFQLYYDVVPTYHKKLLLKIPQLSALFHNNCMYLSHWLLTLGHQFRAELPS 538

Query: 540 SIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQF 592
            +K+ A F D+ P    + EE    Q+      L E L  A GF+N +  + +
Sbjct: 539 PLKDIATFVDLVPGLRRLGEECFLAQLNRQRSELLERLSSARGFENLNDEENY 591

Zw10 and rough deal proteins are both required for correct metaphase check-pointing during mitosis. These proteins bind to the centromere/kinetochore. Length = 593

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 759
KOG2163719 consensus Centromere/kinetochore protein zw10 invo 100.0
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 100.0
PF11989291 Dsl1_C: Retrograde transport protein Dsl1 C termin 100.0
PF10475291 DUF2450: Protein of unknown function N-terminal do 98.44
KOG2163719 consensus Centromere/kinetochore protein zw10 invo 97.37
KOG2176800 consensus Exocyst complex, subunit SEC15 [Intracel 96.81
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 96.81
KOG3691 982 consensus Exocyst complex subunit Sec8 [Intracellu 96.57
KOG2307705 consensus Low density lipoprotein receptor [Intrac 96.52
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 96.5
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 96.27
KOG2180793 consensus Late Golgi protein sorting complex, subu 95.52
KOG2115951 consensus Vacuolar sorting protein VPS45 [Intracel 94.91
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 94.77
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 94.48
PF15469182 Sec5: Exocyst complex component Sec5 93.65
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 90.82
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 84.65
KOG2069581 consensus Golgi transport complex subunit [Intrace 82.7
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 80.54
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-102  Score=847.74  Aligned_cols=693  Identities=24%  Similarity=0.326  Sum_probs=588.5

Q ss_pred             CcccccccchhhccccCCCCCCCCCCCcchHHHHHHhhhccchhhhH-hHHHHHHhhhhchHHHHhhhhhhhhhhhhhhh
Q 004360            1 MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKS-KVQSYIASHHQDFASLFSLCNDTVSRTDEIST   79 (759)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~e~k~-~v~~~i~~~y~~f~~~~~~~~~l~~~~~~l~~   79 (759)
                      +++||.+.|++..|-++|+.+|.+|            +..|+.++++ +|++.|.+.|++|.|.+.+.....+++.+|..
T Consensus         2 ~~~l~Es~n~~g~lekedl~~~it~------------ls~rv~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~r   69 (719)
T KOG2163|consen    2 IDALAESENSYGDLEKEDLKNGITS------------LSQRVVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTR   69 (719)
T ss_pred             chHHHHHhccccchhhhhhcCCccc------------cchHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhh
Confidence            4688888888887766555555555            5566677777 89999999999999999999999999999999


Q ss_pred             cHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhc
Q 004360           80 DLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV  159 (759)
Q Consensus        80 ~l~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~  159 (759)
                      ++++++++|++ ++...++.+.++....+++++   ..+-.+++.+++..+-...+.....+.+.+++..|+++.+.+..
T Consensus        70 di~~l~~~i~s-dv~d~L~e~~~~~~d~e~qle---v~l~~l~~~qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~  145 (719)
T KOG2163|consen   70 DISNLIDQIAS-DVPDMLAEIKSQAQDCENQLE---VQLMKLVEEQEVIMRSETTNCVEWGKAILACLQFLNEANKLLEG  145 (719)
T ss_pred             hHHHHHHHhhh-hhHHHHHHhhcchhhhhhHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999998 788888888889999889888   33335778888888888899888899999999999999999988


Q ss_pred             cCCCCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCC-------eEEEEEEEeecCc---ccchHHHHHH---
Q 004360          160 GDENASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRFEKESN-------RVLVKYQLTVDGL---DGIELRTVLE---  226 (759)
Q Consensus       160 ~~~~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~~~~~~~-------~i~v~~~~~~~~~---~~~~L~~vl~---  226 (759)
                      .+...-+..+.+.+..++.-++.+...++...|.....|..-..       ...+..++-..++   ...+++....   
T Consensus       146 ~grd~fd~~~lk~l~~vlrI~k~ne~yel~a~~~~~~~w~~~~s~qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~i  225 (719)
T KOG2163|consen  146 IGRDGFDMSVLKHLAAVLRILKYNERYELSADYERAMNWPKLSSIQECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAMI  225 (719)
T ss_pred             cCcccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcccCccHHHHHHHHHHhheeeeeccchhhhhhcCChHHHHHH
Confidence            88666788889999999999999999999999999888832111       0112222211111   1234444444   


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhcccccccCCccchhhhcCCCchhhHHHHHhhccCCCccccccCcceeehhHHHHHHH
Q 004360          227 AMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKF  306 (759)
Q Consensus       227 AL~~lg~l~~~l~~l~~~L~~~il~Pli~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~v~~~l~~vl~F  306 (759)
                      |+..+++..+..+  +..|+++++.|+.+.|...+.+++   ++   +....++...-..    .+..+.|.++..|++-
T Consensus       226 a~s~l~E~~~~~k--~~~Lldyclapvasrp~~hvyie~---~p---~~~~~Rf~~~~~~----~s~a~~f~~v~~VlEs  293 (719)
T KOG2163|consen  226 AISQLPERLDAWK--IVILLDYCLAPVASRPGVHVYIED---NP---TPDQTRFLINQKP----RSKADKFIDVAKVLES  293 (719)
T ss_pred             HHHHhHHHhhhHH--HHHHHHHhHHHhccCccceeeecc---CC---Ccceeeeeecccc----CchHhhhhHHHHHHHH
Confidence            4445555444444  678999999999999987554453   11   1134444332111    2666788888888888


Q ss_pred             hhhhhcc---------cCCceeeecccccchhhhHHHHHhhhhccCCCccccccchHHHHhcchhHHHHHHHhhccccCC
Q 004360          307 IHKRICL---------QNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASD  377 (759)
Q Consensus       307 L~~~L~~---------~n~~l~~~~g~~i~~~ls~~lI~~~L~~aIP~~~~~l~~f~~vi~~~~~Fe~~L~~lgf~~~~~  377 (759)
                      +.-.|+.         ....+.+++|++||.+|+++|+++||.++||.+.+++.+|+.+|+.+.+||..|+++.|++..+
T Consensus       294 l~l~Lh~l~~~e~evt~~~~~~emigDhi~e~l~~~l~k~cl~~avP~~stkl~d~e~iie~t~qfE~aLkem~f~~~~d  373 (719)
T KOG2163|consen  294 LELKLHVLHSHELEVTTGKTFTEMIGDHIEEQLITMLLKDCLAIAVPVTSTKLEDQEMIIELTQQFEVALKEMKFLGFFD  373 (719)
T ss_pred             hhhcccccccchhhhcccchHHHHHhHHHHHHHHHHHHHhhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            7755441         2467889999999999999999999999999999999999999999999999999997776555


Q ss_pred             chhhhhhhccccceeeeccchhhHHHHHhhchhhccccccccccCCCCCcccCCCccccCcccchhhhhccchhhHHHHH
Q 004360          378 NKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAA  457 (759)
Q Consensus       378 ~~~~~L~~~v~~i~~~~~~krr~~~L~~aR~ll~~~d~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~  457 (759)
                      . .+.|.+|++++++||++|||.++|++||+||.++-.+.+.+.+            ....+++...+|.+|+|+||+++
T Consensus       374 q-~~allkfaed~ethfanRkc~~il~kARnLi~~~~~~~v~vip------------ntha~hvanl~FsfprC~vSeSa  440 (719)
T KOG2163|consen  374 Q-KSALLKFAEDTETHFANRKCFAILSKARNLINETYDKLVTVIP------------NTHAEHVANLYFSFPRCTVSESA  440 (719)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceecc------------cccHHHHhhhhccCcceeecHHH
Confidence            3 4699999999999999999999999999999975444454332            12344556678999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcc-hhhHHHHhhhhhhhhhhhhhcccchhhhhccCcceeeeeecCcchhhhhhhhhceeeeccC
Q 004360          458 SQLMKLVHQILQDICLSS-TRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSD  536 (759)
Q Consensus       458 ~~l~~Li~~~L~ea~~ss-~~~a~~L~~~~~~i~~Ly~a~~P~~~~~~l~~~p~~a~l~yNDc~YLa~~L~~l~~~~~~~  536 (759)
                      .++|+|++++|.+++.++ +++|.+||+++|+|+.||.++||++|++.|+|+||+|++|||||||++|+..+.++     
T Consensus       441 ~~fvnL~~~tL~~at~ss~dq~a~~la~~arni~hly~~vVP~khrell~siPq~AaifhNNCmyi~h~~~~h~f-----  515 (719)
T KOG2163|consen  441 INFVNLLRDTLKAATASSDDQAAAKLALTARNIVHLYVIVVPRKHRELLSSIPQMAAIFHNNCMYISHCIMTHSF-----  515 (719)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchHHHHHhcccHHHHHHHHhhhc-----
Confidence            999999999999999887 89999999999999999999999999999999999999999999999998777655     


Q ss_pred             CCcccchhhhhccccchhhchHHHHHhHhHHhhhhhhhhhhccCccccchhhhhhccccccceeeeeeeeeeeeeccccc
Q 004360          537 FPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPL  616 (759)
Q Consensus       537 l~~~~~~~~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~a~gf~~~~~~~~~~~~~~av~q~~~~L~~L~~~W~~v  616 (759)
                           .+..+|+|++|+||.+|++||++|+.+|+++|+++|++++||.++++...+++|+++|+||++||+.|+++|++|
T Consensus       516 -----~g~~~ladlaprlr~~a~ecf~kQv~~q~seL~e~l~sa~~Fen~~~ee~~ssa~klVrQcL~qLkll~~vw~~v  590 (719)
T KOG2163|consen  516 -----LGEPLLADLAPRLRTVAAECFEKQVTRQRSELTEYLESASIFENLPAEEMSSSADKLVRQCLLQLKLLAKVWREV  590 (719)
T ss_pred             -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcHHhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence                 256789999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             cCccccchhhHHHHHHHHHHhhhhhhcccccchHhHHhHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCCCCCchhhhhh
Q 004360          617 LLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPS  696 (759)
Q Consensus       617 Lp~~vy~~~ig~Ll~~~~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~lF~~~~~~~~~~~~~~~~~~~~~~~v~~  696 (759)
                      ||+.+||++||+|+|+++.++|.+|+.++|||++++.+|+.||+.+++.++++|.++.+           .+.+..+|++
T Consensus       591 Lpe~vYck~mc~Llnt~~~elir~V~tl~Disa~da~eL~dLik~vL~~~p~vfa~~~e-----------~~et~v~v~~  659 (719)
T KOG2163|consen  591 LPEVVYCKVMCSLLNTLLDELIRHVVTLSDISANDANELADLIKRVLEVVPNVFAYKEE-----------TKETDVCVRE  659 (719)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHHhhhhhhcChhh-----------ccCccccHHH
Confidence            99999999999999999999999999999999999999999999999999999987642           1355789999


Q ss_pred             HHHHHHHHHHhcCcchhhhhhhccCc-eeecccchHHHHHHHHHHhcCCchhhhhhhccc
Q 004360          697 LCKFRKLAELLDMPLRSITAAWESGE-LLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE  755 (759)
Q Consensus       697 W~K~~~L~~iL~~sL~dI~~~w~~G~-ll~~~fs~~Ev~~LIrAlF~ds~~R~~~l~~I~  755 (759)
                      |++|+++.++|++||.||+.||.+|+ |+++.||.+||++|||||||||++|+++|++|+
T Consensus       660 w~pl~el~~mL~asLmeIt~rW~dgkGplaa~fsrsEVk~lIkALFqDs~wRadaia~i~  719 (719)
T KOG2163|consen  660 WFPLNELVFMLGASLMEITHRWFDGKGPLAAHFSRSEVKGLIKALFQDSQWRADAIARIQ  719 (719)
T ss_pred             hccHHHHHHHhCchHhHHHHHHhcCCccHHhhccHHHHHHHHHHHhhchHHHHHHHhhcC
Confidence            99999999999999999999999999 999999999999999999999999999999985

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum [] Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query759
3k8p_C357 DSL1, KLLA0C02695P; intracellular trafficking, DSL 4e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} Length = 357 Back     alignment and structure
 Score =  133 bits (335), Expect = 4e-34
 Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 24/202 (11%)

Query: 559 EEILQRQIQIVIFNLREALDG--ADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPL 616
            E+  R++ + +  +++ +     D  Q     ++      +I  +   L  +     P 
Sbjct: 171 MELNSRRLDLNLNLIKKTIYKLVNDQLQELKDNERTPDWDITISSL---LPYLKKTALPT 227

Query: 617 LLPSTYNRSMCTVLESVFSR-ITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAA 675
           L     N  +  ++  +    +  +IL    ++ + +  L   I L+L  L     +L  
Sbjct: 228 LYKLEDNTILVALIRYIVHDLVIDNILHWRVISEKSSENLSEFIMLLLSGLEIPRLNL-- 285

Query: 676 VNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIED 735
                         ++    S  K   L+++L   L+ I   +  GE     F   EI  
Sbjct: 286 --------------IETYRHSREKLGILSKILTAHLKDILEMFYEGEFF--LFETDEIVQ 329

Query: 736 FIKAIFADSTLRKECLWRIENV 757
           +I  +FAD+  R++C+  I  V
Sbjct: 330 WIILLFADTPTRRDCIDEIRRV 351
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query759
3k8p_C357 DSL1, KLLA0C02695P; intracellular trafficking, DSL 99.96
3hr0_A263 COG4; conserved oligomeric golgi complex, intracel 88.71
2fji_1399 Exocyst complex component SEC6; exocytosis, tandem 87.29
2d2s_A235 Exocyst complex component EXO84; tethering complex 81.44
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} Back     alignment and structure
Probab=99.96  E-value=1.9e-31  Score=278.29  Aligned_cols=251  Identities=18%  Similarity=0.231  Sum_probs=171.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhh-cchhhHHHHhhhhhhhhh-hhhhcccchhhhhccCcceeeeeecCcchhhhhhhhh
Q 004360          451 CVVTKAASQLMKLVHQILQDICL-SSTRVAFEFYHAARDAIL-LYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILG  528 (759)
Q Consensus       451 c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~~~~~~i~~-Ly~a~~P~~~~~~l~~~p~~a~l~yNDc~YLa~~L~~  528 (759)
                      ..||+.|+.+..++......+.. +...+. +-|..-.+++. .|-|+.-.+| ..-       -.||||--|+-.+=..
T Consensus        96 i~vt~lp~~f~~i~~~f~~~~~~~~~~~~~-~~~~yK~NlLqT~f~am~~~~~-~~W-------wqly~D~ryi~~~~~~  166 (357)
T 3k8p_C           96 IQVSVFVQSAAKVFTEFEQGCDTIGRSKVE-SIYLYKFNLLQTAFFAMVSEKV-NDW-------TQLYKDVRYLYTENPK  166 (357)
T ss_dssp             EEEETHHHHHHHHHHHHHHHHHTTTTTSSH-HHHHHHHHHHHHHHHHHHHHHC-SCH-------HHHHHHHHHHHHHCTT
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHhh-hHH-------HHHHHHHHHHHhcChh
Confidence            88999999999999999887743 233333 44544444443 3777777776 322       7899999999776111


Q ss_pred             ceeeeccCCCcccchh-hhhccccchhhchHHHHHhHhHHhhhhhhhhhhccCccccchhhhhhccccccceeeeeeeee
Q 004360          529 FAFEYHSDFPSSIKEH-AVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILE  607 (759)
Q Consensus       529 l~~~~~~~l~~~~~~~-~~f~d~~~~~r~~~~~~~~~qi~~~~~~l~~~L~~a~gf~~~~~~~~~~~~~~av~q~~~~L~  607 (759)
                      |   +      .++++ ..|.+.--.   +-+....+-|+.|   |.++-+...+=+.-..          +++   -|-
T Consensus       167 l---~------rl~EL~~~~le~~l~---~~~k~v~~lv~~q---L~~l~~nE~~p~W~~t----------~~~---LlP  218 (357)
T 3k8p_C          167 L---L------QLMELNSRRLDLNLN---LIKKTIYKLVNDQ---LQELKDNERTPDWDIT----------ISS---LLP  218 (357)
T ss_dssp             C---H------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHTSSSCCCHHH----------HHT---HHH
T ss_pred             h---H------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHhccCCCCHHHH----------HHH---HHH
Confidence            1   0      01111 122222110   0011112222222   2333223222221100          111   122


Q ss_pred             eeeeccccccCccccchhhHHHHHHHH-HHhhhhhhcccccchHhHHhHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCC
Q 004360          608 KVHIIWEPLLLPSTYNRSMCTVLESVF-SRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDF  686 (759)
Q Consensus       608 ~L~~~W~~vLp~~vy~~~ig~Ll~~~~-~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~lF~~~~~~~~~~~~~~~~  686 (759)
                      -+.+.|.+.|.+....+.++.|+|+++ ++||++|++++|||+++|++|+.||+.+.+. ..+  |..            
T Consensus       219 ~i~~~i~~pl~k~~~~~~l~~lvnfi~~~~II~dIl~LeDISE~eS~~La~Li~~l~~l-~~l--P~l------------  283 (357)
T 3k8p_C          219 YLKKTALPTLYKLEDNTILVALIRYIVHDLVIDNILHWRVISEKSSENLSEFIMLLLSG-LEI--PRL------------  283 (357)
T ss_dssp             HHHHTHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TCC--GGG------------
T ss_pred             HHHHHhhhHhhcchHHHHHHHHHHHHHhhHHHHHHcCcccCCHHHHHHHHHHHHHHHcC-CCC--ccc------------
Confidence            234456777777889999999999999 9999999999999999999999999985333 222  210            


Q ss_pred             CCCchhhhhhHHHHHHHHHHhcCcchhhhhhhccCceeecccchHHHHHHHHHHhcCCchhhhhhhcccc
Q 004360          687 ARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIEN  756 (759)
Q Consensus       687 ~~~~~~~v~~W~K~~~L~~iL~~sL~dI~~~w~~G~ll~~~fs~~Ev~~LIrAlF~ds~~R~~~l~~I~~  756 (759)
                       ..++.|||+|.||+||++||++||+||++||++|++ + +|+++||++||||||+|||+|+++|++|++
T Consensus       284 -~~i~~Yv~~W~Kf~~L~~IL~ssLkDI~~lW~eGeL-~-~FstdEVv~LIrALFaDT~~Rr~aI~eIre  350 (357)
T 3k8p_C          284 -NLIETYRHSREKLGILSKILTAHLKDILEMFYEGEF-F-LFETDEIVQWIILLFADTPTRRDCIDEIRR  350 (357)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTGG-G-GSCHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCc-c-eecHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence             135899999999999999999999999999999998 4 999999999999999999999999999986
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens} Back     alignment and structure
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query759
d2d2sa1229 Exocyst complex component EXO84 {Baker's yeast (Sa 84.06
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.06  E-value=2.5  Score=40.05  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhhHHHHHHhhcCchhhhHHHHHHHHhHhhccCC--CCCCchhHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q 004360          121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDE--NASEPLVYGLLRKEWLVCFEEIQELLVKFVESAVRF  198 (759)
Q Consensus       121 l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~L~~l~~~l~~~~~--~~~~~~I~~~L~~~~~~l~~~i~~~L~~~~~~~v~~  198 (759)
                      -+.++.+...+++.+-.+.+++|.+|+..+++.+..+...+.  ...+..+...++.++.+.++.+.++|...-..    
T Consensus         6 ~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~~----   81 (229)
T d2d2sa1           6 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----   81 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence            367899999999999999999999999999999999888752  22344455668888888888888888653321    


Q ss_pred             cccCCeEEEEEEEeecCcccchHHHHHHHHHHHHhhhhh
Q 004360          199 EKESNRVLVKYQLTVDGLDGIELRTVLEAMEVVGILDYG  237 (759)
Q Consensus       199 ~~~~~~i~v~~~~~~~~~~~~~L~~vl~AL~~lg~l~~~  237 (759)
                         ++             +...+..++..|.+||.-+..
T Consensus        82 ---~~-------------~~~~~~~~v~~L~rLg~~~~A  104 (229)
T d2d2sa1          82 ---SN-------------EIVHLKSGTENMIKLGLPEQA  104 (229)
T ss_dssp             ---CS-------------SHHHHHHHHHHHHHTTCHHHH
T ss_pred             ---cC-------------ChHHHHHHHHHHHHcCCchHH
Confidence               11             124567788888888765544