Citrus Sinensis ID: 004428
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | 2.2.26 [Sep-21-2011] | |||||||
| Q642T7 | 765 | Digestive organ expansion | yes | no | 0.616 | 0.607 | 0.392 | 1e-106 | |
| Q68CQ4 | 756 | Digestive organ expansion | yes | no | 0.618 | 0.616 | 0.385 | 1e-102 | |
| Q5ZLG3 | 772 | Digestive organ expansion | yes | no | 0.644 | 0.629 | 0.367 | 1e-101 | |
| Q8BTT6 | 772 | Digestive organ expansion | yes | no | 0.618 | 0.603 | 0.379 | 1e-101 | |
| Q5M9G7 | 763 | Digestive organ expansion | yes | no | 0.616 | 0.609 | 0.378 | 1e-100 | |
| Q6PEH4 | 753 | Digestive organ expansion | yes | no | 0.708 | 0.709 | 0.351 | 1e-100 | |
| B6JX19 | 640 | U3 small nucleolar RNA-as | N/A | no | 0.636 | 0.75 | 0.362 | 3e-99 | |
| B8LVD6 | 729 | U3 small nucleolar RNA-as | N/A | no | 0.871 | 0.901 | 0.324 | 1e-98 | |
| A4R0E6 | 722 | U3 small nucleolar RNA-as | N/A | no | 0.572 | 0.598 | 0.400 | 1e-98 | |
| B6Q702 | 734 | U3 small nucleolar RNA-as | N/A | no | 0.592 | 0.608 | 0.375 | 1e-96 |
| >sp|Q642T7|DIEXF_XENTR Digestive organ expansion factor homolog OS=Xenopus tropicalis GN=diexf PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/500 (39%), Positives = 304/500 (60%), Gaps = 35/500 (7%)
Query: 262 QRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321
QR FS+ NSYRD+ + P +G+E I Y +H+LNH+ + V N+++
Sbjct: 289 QRELFSIMNSYRDLFFPARSP-TAQGEE----IRHVYCLHALNHVLKANAQVLNNNSQKR 343
Query: 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP-DAHKVNVEHID 380
K E + D+G TRPKVLI++P + AL +V+ LI L KV+V +
Sbjct: 344 DQKPGLDE-----EDLRDQGLTRPKVLIVVPFRESALRIVQILISLMEVGGRKVDVSNKK 398
Query: 381 RFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTR 440
RF +EFG++ E D N++ +P DY+ +F GN DD+F IG+ +
Sbjct: 399 RFKEEFGSEPE-------DRPPNLK----------RPEDYEAVFAGNIDDHFRIGVAILQ 441
Query: 441 KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWS 500
KS++LY+ FY+SD+I+ASP+ L + + +E K++D D+LSSIEVLI+D AD+ LMQNW
Sbjct: 442 KSMRLYSPFYSSDIIIASPVGL-RTIIGSEGEKKRDFDFLSSIEVLILDQADLYLMQNWE 500
Query: 501 WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCAN 560
++ ++ LN P+ HG D R+R W L ++++YRQT+L S P+IN+ FN HC N
Sbjct: 501 HVLHLMAHLNLQPTDSHGVDFSRVRMWNLSNWAKYYRQTLLFSSLQEPQINSIFNKHCFN 560
Query: 561 YQGKVKLA-CEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQG 619
Y G+V + G + V++ + +++R ADS+ DAR E+FT K+ P+ +D+I
Sbjct: 561 YCGQVAVRNMPVTGSISHVVVQLPHVFQRLEADSLLTVIDARFEFFTSKILPQYRDAIMS 620
Query: 620 GIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSH 679
++++ SYF++VRLRN+ K + +F + +YT S +SRAR +F +G+R+ +L TER H
Sbjct: 621 HTLIYIPSYFDYVRLRNYFKKEELNFTHICEYTNRSGVSRARQFFLKGERQFLLVTERFH 680
Query: 680 FYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-----NMTCTVLFSRFDMLRLERI 734
FY RY ++GI+NLI Y LP FY E+ NM++ H TCTVL+S++D RL +
Sbjct: 681 FYKRYTLKGIRNLIFYELPTYPHFYSEVCNMMKAWHRGEEATWTCTVLYSKYDAQRLAAV 740
Query: 735 VGSAHAKKMVKSEKGVFVFC 754
VG+ A +M++S+K V +F
Sbjct: 741 VGAERAAQMLQSKKNVHLFV 760
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Regulates the p53 pathway to control the expansion growth of digestive organs. Xenopus tropicalis (taxid: 8364) |
| >sp|Q68CQ4|DIEXF_HUMAN Digestive organ expansion factor homolog OS=Homo sapiens GN=DIEXF PE=1 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/501 (38%), Positives = 299/501 (59%), Gaps = 35/501 (6%)
Query: 262 QRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321
Q+ F + NSYRD+ + + LK EE I Y +H +NHI + V N+++
Sbjct: 279 QKELFLIMNSYRDLFYPERTA--LKNGEE---IRHVYCLHVINHILKANAQVLGNNSR-- 331
Query: 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP--DAHKVNVEHI 379
+ S K G+ D F D+G TRPKVLI++P + AL VV+ I L K+ V +
Sbjct: 332 --RRSQKFGVGDDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNK 389
Query: 380 DRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT 439
RF E+G+ EE R N ++ P DY+ +F GN DD+F IG+
Sbjct: 390 KRFQGEYGSDPEE---------------RPPNLKR--PEDYEAVFVGNIDDHFRIGVAIL 432
Query: 440 RKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499
++SI+LY FY+SD+++ASP+ L + + E K++D D+LSSIE+LIID ADI LMQNW
Sbjct: 433 QRSIRLYAPFYSSDILIASPLGL-RTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNW 491
Query: 500 SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA 559
++ ++ +N +P HG D R+R W L+ +S++YRQT+L + +IN+ FN +C
Sbjct: 492 EHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCV 551
Query: 560 NYQGKVKLA-CEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQ 618
N QG+V + G + VL+ + +++R A+++A DAR +F K+ P+ +D++
Sbjct: 552 NMQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAENLASVIDARFNFFVNKILPQYRDAVM 611
Query: 619 GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS 678
++++ SYF+FVRLRN+ K + +F + +YT+ S +SRAR +F +G+++ +L+TER
Sbjct: 612 SHTLIYIPSYFDFVRLRNYFKKEELNFTHICEYTQKSGVSRARHFFLQGEKQFLLFTERF 671
Query: 679 HFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-----NMTCTVLFSRFDMLRLER 733
HFY RY I+GI+NLI Y LP FY EI NML ++ TCTVL+S++D RL
Sbjct: 672 HFYKRYTIKGIRNLIFYELPTYPHFYSEICNMLRATNRGEEATWTCTVLYSKYDAQRLAA 731
Query: 734 IVGSAHAKKMVKSEKGVFVFC 754
+VG A +M++S K V +F
Sbjct: 732 VVGVERAAQMLQSNKNVHLFI 752
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Regulates the p53 pathway to control the expansion growth of digestive organs. Homo sapiens (taxid: 9606) |
| >sp|Q5ZLG3|DIEXF_CHICK Digestive organ expansion factor homolog OS=Gallus gallus GN=DIEXF PE=2 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/523 (36%), Positives = 306/523 (58%), Gaps = 37/523 (7%)
Query: 239 PKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETY 298
PK+ KH+L +K + F + QR F + N+YRD+ + + G+E I Y
Sbjct: 273 PKVNKHYLSSASKPS-DSFFTPLQRELFCIMNTYRDLFYPERNAL-TNGEE----IRHAY 326
Query: 299 LMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIAL 358
+H+LNHI + V N+ K K D + D+G TRPKVL+++P + AL
Sbjct: 327 CLHALNHILKANAQVLSNNAKKRDQKPGTD-----SDDYRDQGLTRPKVLMIVPFRECAL 381
Query: 359 NVVKRLIRL--TPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416
+V I L + K++V + RF EFG+ D D+ N++ +
Sbjct: 382 RIVHIFISLLEVNEKRKIDVSNKKRFKGEFGS-------DPDEKPPNLK----------R 424
Query: 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQD 476
P DY+ +F GN DD+F IG+ +KS++LY FY+SD+I+ASP+ + + + E K++D
Sbjct: 425 PEDYEAVFAGNIDDHFRIGVAILQKSMRLYAPFYSSDIIIASPLGM-RTIIGTEGEKKRD 483
Query: 477 VDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFY 536
D+LSSIE+LIID ADI LMQNW ++ ++ +N +P HG D R+R L+ +S++Y
Sbjct: 484 FDFLSSIEMLIIDQADIYLMQNWEHVLHLMRHINLLPLDSHGVDFSRVRMPNLNNWSKYY 543
Query: 537 RQTVLLSYHPNPEINAFFNHHCANYQGKVKLA-CEYKGVLPKVLLNVRQIYERFNADSIA 595
RQT+L S +P+INA FN HC NY G+V + G + +V++ + ++ R A+++
Sbjct: 544 RQTLLFSALQDPQINAIFNKHCFNYVGQVAVRNVPLSGSISRVVVQLPHVFRRIEAENLT 603
Query: 596 KADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPS 655
D R ++F KV P+ +D+I ++++ SYF++VRLRN+ K + +F + +YT+ +
Sbjct: 604 SVIDTRFQFFIDKVLPEYRDAIMSHTLIYVPSYFDYVRLRNYFKKEELNFTHICEYTKKA 663
Query: 656 DISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715
I RAR F +G+++ +L TER HFY RY I+GI+NLI Y LP FY EI NM++ +
Sbjct: 664 GICRARRSFLKGEKQFLLLTERFHFYKRYTIKGIRNLIFYELPTYSHFYSEICNMMKATD 723
Query: 716 N-----MTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
+ TCTVL+S++D +L +VG +M++S+K V +F
Sbjct: 724 SGVDATWTCTVLYSKYDAQKLAAVVGIDRTAQMLQSKKNVHLF 766
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Regulates the p53 pathway to control the expansion growth of digestive organs. Gallus gallus (taxid: 9031) |
| >sp|Q8BTT6|DIEXF_MOUSE Digestive organ expansion factor homolog OS=Mus musculus GN=Diexf PE=2 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/501 (37%), Positives = 296/501 (59%), Gaps = 35/501 (6%)
Query: 262 QRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321
Q+ F + NSYRD+ + + LK EE + Y +H++NH+ + V N+++
Sbjct: 295 QKELFLIMNSYRDLFYPERTA--LKNGEE---VRHVYCLHAINHVLKANAQVLANNSR-- 347
Query: 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP--DAHKVNVEHI 379
+ S K G+ D F D+G TRPKVLI++P + AL VV+ I L K+ V +
Sbjct: 348 --RRSQKLGVGEDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNK 405
Query: 380 DRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT 439
RF E+G+ EE R N ++ P DY+ +F GN DD+F IG+
Sbjct: 406 KRFQGEYGSDPEE---------------RPPNLKR--PEDYEAVFVGNIDDHFRIGVAIL 448
Query: 440 RKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499
++SI+LY FY+SD+++ASP+ L + + E K++D D+LSS+E+LIID ADI LMQNW
Sbjct: 449 QRSIRLYAPFYSSDILIASPLGL-RTIIGGEGEKKRDFDFLSSVELLIIDQADIYLMQNW 507
Query: 500 SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA 559
++ ++ +N +P HG D R+R W L+ +S++YRQT+L + +IN+ FN HC
Sbjct: 508 EHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKHCI 567
Query: 560 NYQGKVKLA-CEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQ 618
N QG+V + G + VL+ + +++R A ++ DAR +F K+ P+ +D++
Sbjct: 568 NAQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAQDLSSVIDARFHFFINKILPQYRDAVM 627
Query: 619 GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS 678
++++ SYF+FVRLRN+ K + +F + +YT+ S ISRAR +F +G+++ +L TER
Sbjct: 628 SHTLIYVPSYFDFVRLRNYFKKEELNFTHICEYTQKSGISRARHFFLQGEKQFLLLTERF 687
Query: 679 HFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-----NMTCTVLFSRFDMLRLER 733
HFY RY I+GI+NLI Y LP FY E+ NML + TCTVL+S++D RL
Sbjct: 688 HFYKRYTIKGIRNLIFYELPTYPHFYSEVCNMLRATSRGEEATWTCTVLYSKYDAQRLAA 747
Query: 734 IVGSAHAKKMVKSEKGVFVFC 754
+VG A +M++S K V +F
Sbjct: 748 VVGVERAAQMLQSPKNVHLFV 768
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Regulates the p53 pathway to control the expansion growth of digestive organs. Mus musculus (taxid: 10090) |
| >sp|Q5M9G7|DIEXF_RAT Digestive organ expansion factor homolog OS=Rattus norvegicus GN=Diexf PE=2 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/500 (37%), Positives = 296/500 (59%), Gaps = 35/500 (7%)
Query: 262 QRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321
Q+ F + NSYRD+ + + LK EE + Y +H++NH+ + V N+++
Sbjct: 286 QKELFLIMNSYRDLFYPERTA--LKNGEE---VRHVYCLHAINHVLKANAQVLANNSR-- 338
Query: 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP--DAHKVNVEHI 379
+ + K G+ D F D+G TRPKVLI++P + AL VV+ I L K+ V +
Sbjct: 339 --RRTQKLGVGDDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNK 396
Query: 380 DRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT 439
RF E+G+ EE R N ++ P DY+ +F GN DD+F IG+
Sbjct: 397 KRFQGEYGSDPEE---------------RPPNLKR--PEDYEAVFVGNIDDHFRIGVAIL 439
Query: 440 RKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499
++SI+LY FY+SD+++ASP+ L + + E K++D D+LSSIE+LIID ADI LMQNW
Sbjct: 440 QRSIRLYAPFYSSDILIASPLGL-RTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNW 498
Query: 500 SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA 559
++ ++ +N +P HG + R+R W L+ +S++YRQT+L + +IN+ FN HC
Sbjct: 499 EHVLHLMNHMNLLPLDSHGVNFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKHCV 558
Query: 560 NYQGKVKLA-CEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQ 618
N QG+V + G + VL+ + +++R A +A DAR +F K+ P+ +D++
Sbjct: 559 NAQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAQDLASVIDARFHFFINKILPQYRDAVM 618
Query: 619 GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS 678
++++ SYF+FVRLRN+ K + +F + +YT+ S +SRAR +F +G+++ +L TER
Sbjct: 619 SHTLIYVPSYFDFVRLRNYFKKEELNFTHICEYTQRSGVSRARHFFLQGEKQFLLLTERF 678
Query: 679 HFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-----NMTCTVLFSRFDMLRLER 733
HFY RY I+GI+NLI Y LP FY E+ NML + TCTVL+S++D RL
Sbjct: 679 HFYKRYTIKGIRNLIFYELPTYAHFYSEVCNMLRATSRGEEATWTCTVLYSKYDAQRLAA 738
Query: 734 IVGSAHAKKMVKSEKGVFVF 753
+VG A +M++S K V +F
Sbjct: 739 VVGVERAAQMLQSPKSVHLF 758
|
Regulates the p53 pathway to control the expansion growth of digestive organs. Rattus norvegicus (taxid: 10116) |
| >sp|Q6PEH4|DIEXF_DANRE Digestive organ expansion factor OS=Danio rerio GN=diexf PE=2 SV=2 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/591 (35%), Positives = 329/591 (55%), Gaps = 57/591 (9%)
Query: 181 FHEHFGYNLSKEEVDDLS---KKKLKYEWEVPAVDMSNC---KWVGTGECFLKDDNLYSD 234
F +H LS+EEV +S K K + +W V C ++ G+ S
Sbjct: 194 FVKHQEIELSEEEVGRISQGSKVKTQVKWAKLGVLQCMCPLERFPAIGQA--------SS 245
Query: 235 YGLKP---KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEED 291
L P L +W + G + Q+ L +YRD+ +N P +E
Sbjct: 246 APLPPIHKTLEANWHLLNLPFGAATDVTELQKEMLGLMGTYRDLYLANLSPL-----KEA 300
Query: 292 SNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILL 351
+ Y +H+LNH+ + V +N+ K+ ++K ++ F D+G TRPKVLIL+
Sbjct: 301 KEVRSAYCLHALNHVLKANSRVLRNNAKLKESKNGDED-------FRDQGLTRPKVLILV 353
Query: 352 PLKSIALNVVKRLIRLT-PDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKS 410
P + AL VV+ + L P K + + RF +E+G ++ D+ N++
Sbjct: 354 PFRDGALRVVQTFMTLLEPKGKKTDASNKKRFKEEYG-------EETDEKPPNLQ----- 401
Query: 411 NSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470
+P DY +F GN DD+F IG+ R S++LY FY+SD+I+ASP+ L + + AE
Sbjct: 402 -----RPDDYHAVFSGNIDDHFRIGMSILRHSMRLYAPFYSSDIIIASPLGL-RTVLGAE 455
Query: 471 ENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLD 530
K++D D+LSSIE+LI+D AD+ LMQNW L+ V+E LN P HG D R+R W L+
Sbjct: 456 GEKKRDHDFLSSIELLIVDQADVFLMQNWEHLLHVLEHLNLQPLDSHGVDFSRVRMWNLN 515
Query: 531 GYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYK-GVLPKVLLNVRQIYERF 589
++ +YRQT++ S P+I HC NY+G+V K G + +VL+ + +++ F
Sbjct: 516 NWAAYYRQTLVFSAIQEPQITNILTKHCHNYRGQVCSKTIPKIGSICQVLVQLPHVFQMF 575
Query: 590 NADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLG 649
++DS DAR ++F K+ P+ +DS+ +++ SYF+FVRLRN+LK ++ SF +
Sbjct: 576 HSDSFMD-QDARFQFFVDKILPQYRDSVMSHTFIYVPSYFDFVRLRNYLKKEDVSFANIS 634
Query: 650 DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709
+Y++ S++SRAR +F +G+++ +L++ER HFY RY I+GI NLI Y LP FY E+ N
Sbjct: 635 EYSQRSEVSRARHYFQKGEKQFLLFSERFHFYKRYTIKGIHNLIFYGLPTYPHFYSEVCN 694
Query: 710 MLE-------GSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
ML+ S + TCT L+SR+D+ RL I G+ A +M++S+K +F
Sbjct: 695 MLQAGVREGGASVSFTCTALYSRYDVHRLAAITGADRAAQMLQSKKTTHLF 745
|
Regulates the p53 pathway to control the expansion growth of digestive organs. Required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas. May not play a major role during the early stage of endodermal organogenesis. Danio rerio (taxid: 7955) |
| >sp|B6JX19|UTP25_SCHJY U3 small nucleolar RNA-associated protein 25 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=utp25 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (932), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 192/530 (36%), Positives = 304/530 (57%), Gaps = 50/530 (9%)
Query: 233 SDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDS 292
SD LK +L + +L I + + F+ Y D+L SN + D+
Sbjct: 153 SDLKLKQRLLRSYLSIKPSGNMTNLQCELAKHIFN----YEDVLFSNV------SSKCDT 202
Query: 293 NIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLP 352
+ Y +H++NH+++ RD V KN K+++N+ F D+G+TRPKVLILLP
Sbjct: 203 LVRNLYTLHAINHVYKVRDHVLKNSAKLSQNQ---------ELEFRDQGYTRPKVLILLP 253
Query: 353 LKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412
++ L V+ LI+ T VE+ RF +EF + E
Sbjct: 254 TRNACLQFVETLIQFTGAEQ---VENRKRFSNEFSIETEV-------------------I 291
Query: 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEEN 472
+ KP D++ LF GN DD F +GIKFTRK+IKL++ FY SD+IVASP+ L + + +
Sbjct: 292 SEKKPEDFRQLFAGNTDDMFRLGIKFTRKTIKLFSQFYNSDIIVASPLGLRMAIGN-KSD 350
Query: 473 KEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGY 532
K++D DYLSSIEV I+D AD +LMQNW L V E +N++P HG D R+R WYL+
Sbjct: 351 KKRDFDYLSSIEVAIVDQADALLMQNWEHLEYVFEHMNKLPKNSHGCDFSRVRPWYLEEQ 410
Query: 533 SRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNAD 592
SR+ RQT++ S++ +INAF+ H N G+VK + KGVL + ++ Q + R +
Sbjct: 411 SRYLRQTLMFSHYNAVDINAFYLHEMLNLAGRVKFHPKQKGVLNSLGYHITQTFARVQTE 470
Query: 593 SIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYT 652
S+ K DAR E+FT + P++ + GGI++++ SYF++VR+RN+ + + S+ + +YT
Sbjct: 471 SLLKVPDARFEHFTSTLVPQLLKNAMGGILVYIPSYFDYVRVRNYFEDEAISYVSICEYT 530
Query: 653 EPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNM-- 710
+ SDISRAR F++ +++++LYTER+H + R+ RG++ +I+Y+ P +FY E+ M
Sbjct: 531 KNSDISRARTQFYQNRKQIMLYTERAHHFRRFDFRGVRGIIMYAPPTNAQFYVELTRMPM 590
Query: 711 ------LEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
+ + C VL++++DM+ +E IVGS M K + ++ F
Sbjct: 591 RSISDGILDADAAKCRVLYTKYDMIPMEPIVGSERVTNMCKGKHDIYEFV 640
|
DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. Schizosaccharomyces japonicus (strain yFS275 / FY16936) (taxid: 402676) |
| >sp|B8LVD6|UTP25_TALSN U3 small nucleolar RNA-associated protein 25 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=utp25 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 254/782 (32%), Positives = 388/782 (49%), Gaps = 125/782 (15%)
Query: 9 RGLTNSKMSSKFDRNKRLRKIQEEN---GAHSSSPSSSEEASGEE--SSGDAVEEIIYKE 63
RG NS +S+ D + + EEN G E EE S EE +
Sbjct: 26 RGGRNSFQTSRIDEKREIESSDEENQFNGFEDDVSGDDEPVQDEEIVDSSSEDEEATTER 85
Query: 64 PSVYDNLLMKLGSSSESVADAFKIRQRQEEGRSDSEEEGVGGPE--SLSESEQEDDISGE 121
P Y++LL L ++SE+ R+R++ R+ S+ + + E + E E++D + +
Sbjct: 86 P--YNSLLQLLNANSETK----HARKRRKLDRAGSKSQDIRDVEIQASKEVEEQDVLENQ 139
Query: 122 GTDSESRNCTTEGTLQQPGSIGIREQNEDADSVASDTDEEHGLGL---------NGQPSS 172
E N + ++ED D ASD E H L N S
Sbjct: 140 EASEEEDNAEADKA----------GESEDEDEDASDPFETHIASLDEAETTKRVNEIKSD 189
Query: 173 EASAHASSFHEHFG--YNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDN 230
+ + SS E+F YN+ E W +P+ V T
Sbjct: 190 KWRSIKSSLPENFRLIYNIPDGE---------GGSWSMPSA-------VKTTRSL----- 228
Query: 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEE 290
LK KL +I G ++ SL +Y D+L + + P
Sbjct: 229 -----KLKKKLVSRAAEILPSFEG------VAQNIASLVFNYSDVLFAGRTP------SN 271
Query: 291 DSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLIL 350
+ + + +HSLNH+ +TRD V KN+ +++++ E I + D+GFTRPKVL++
Sbjct: 272 AAQMRDLLSLHSLNHVLKTRDRVIKNNARLSRD---TNEDIEV----RDQGFTRPKVLVI 324
Query: 351 LPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKS 410
LP + + V+ + ++ + N + RF DE+ + E
Sbjct: 325 LPTRQACVRFVESISKIYQPEQQENRK---RFMDEYHAEDNE------------------ 363
Query: 411 NSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470
S SKP D++ LFGGN+DD F IG+KFTRK+IK Y+ FY SD+I+ASP+ L M K E
Sbjct: 364 -SWASKPDDFRDLFGGNDDDMFRIGLKFTRKTIKYYSQFYNSDIILASPLGLRTIMDK-E 421
Query: 471 ENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLD 530
+ K++D D+LSSIE+ I+DH+D +LMQNW + + E LN P + HG D R+R WYLD
Sbjct: 422 DEKKRDHDFLSSIEIAIVDHSDGLLMQNWEHVEYICEHLNLQPKEAHGCDFSRVRTWYLD 481
Query: 531 GYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLL--NVRQIYER 588
+R+ RQT++L+ PEIN+ F+ H N GK K+ +Y G + +V L V+Q + R
Sbjct: 482 DRARYIRQTIVLTSFLTPEINSLFSQHMQNIAGKSKILPQYNGAITEVALPITVKQTFSR 541
Query: 589 FNADSIAKADDARLEYFTKKVFPKIKDSIQG-------GIMLFLSSYFEFVRLRNFL--- 638
F++ K D R +YFT + P + S+ G G ++F+ SY +FVR+RNF
Sbjct: 542 FDSTFALKDPDLRFKYFTTAILPALARSVTGKGEGNGAGTLIFIPSYLDFVRVRNFFATS 601
Query: 639 -KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL 697
++ N SF + +YTE S++SRAR F G+ ++LYTER+H + RY IRG++++I Y L
Sbjct: 602 SQATNISFGAISEYTEQSEMSRARSHFMNGRLSVLLYTERAHHFRRYNIRGVKHIIFYGL 661
Query: 698 PERKEFYPEIVNML----------EGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSE 747
PE F+ EIV L G+ N+ +FS++D +LERIVG+ A M+K +
Sbjct: 662 PENPIFFREIVQYLGQDPGVLAGTAGAENLDVRAVFSKYDAFKLERIVGTQRAGNMLKEK 721
Query: 748 KG 749
G
Sbjct: 722 GG 723
|
DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) (taxid: 441959) |
| >sp|A4R0E6|UTP25_MAGO7 U3 small nucleolar RNA-associated protein 25 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=UTP25 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 291/479 (60%), Gaps = 47/479 (9%)
Query: 293 NIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLP 352
N+ +H+LNHIF+TRD V KN K+AK SA + F D+GFTRPKVL+LLP
Sbjct: 274 NLRRLVCLHALNHIFKTRDRVIKNSAKLAKE--SADPDL----EFRDQGFTRPKVLMLLP 327
Query: 353 LKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412
++ +++ + LT + N + RF D + T+++++ +D
Sbjct: 328 TRNSCAKMIEMMCSLTETDQQENRK---RFDDSYVTREKQKFSND--------------- 369
Query: 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEEN 472
KP+D++ LF GN DD F +G+KFTRK+IK ++ FY SD+++ASP+ L M EE
Sbjct: 370 ---KPTDFRDLFEGNADDMFRLGVKFTRKTIKFFSQFYNSDILLASPLGLRMAMGSTEE- 425
Query: 473 KEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGY 532
K D D+LSSIE++I+D AD ILMQNW + + E LNR P + HG D RIR WYLDG
Sbjct: 426 KNLDHDFLSSIEIVIMDQADAILMQNWEHVEHIFEHLNRQPKEAHGADFSRIRSWYLDGQ 485
Query: 533 SRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNAD 592
S+ YRQTV+LS NP+++ HC N+QGK+++ +Y+GV+ ++ + V+Q + RF+A
Sbjct: 486 SKNYRQTVILSSFNNPDLSEVMRVHCHNWQGKIRIQPDYQGVIQQLGVKVKQTFSRFDAQ 545
Query: 593 SIAKADDARLEYFTKKVFP----KIKDSIQGGIMLFLSSYFEFVRLRNFLKS----QNAS 644
+I DAR EYF K V P ++KDS G ++F+ SY +FVR+RN+ + Q+ S
Sbjct: 546 TIIADPDARFEYFIKAVVPSLTKRVKDSC--GTLVFIPSYMDFVRVRNWFATSPAAQSLS 603
Query: 645 FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704
F ++ ++TE S+ SRAR F G++K++LYTER H + R+++RG++ +I Y LP+ FY
Sbjct: 604 FGVISEHTEVSETSRARSHFVTGRQKVLLYTERCHHFWRHQLRGVRRVIFYGLPDNPVFY 663
Query: 705 PEIVNMLEGSHNMTCTV---------LFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
EI G T+ +FS++D+++LER+VG+ KM+ + F F
Sbjct: 664 KEIAGGCLGRSEQDMTLEPGEGSVRAMFSKYDVMKLERVVGTPRVGKMLHEKGDTFDFV 722
|
DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) |
| >sp|B6Q702|UTP25_PENMQ U3 small nucleolar RNA-associated protein 25 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=utp25 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 190/506 (37%), Positives = 289/506 (57%), Gaps = 59/506 (11%)
Query: 267 SLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVS 326
SL +Y D+L ++K + + + +H+LNH+ +TRD V KN+ +++++
Sbjct: 259 SLVFNYSDVLFGDRK------ASNAAQLRDLLSLHALNHVLKTRDRVIKNNARLSRDINP 312
Query: 327 AKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386
E D+GFTRPKVLI+LP + + + + RL + E+ RF DE+
Sbjct: 313 DIE-------LRDQGFTRPKVLIILPTRQACVRFIDSISRLYQPEQQ---ENRKRFMDEY 362
Query: 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLY 446
K E S +SKP D++ LFGGN+DD F IG+KFTRK+IK Y
Sbjct: 363 NAKDNE-------------------SWESKPDDFRDLFGGNDDDMFRIGLKFTRKTIKYY 403
Query: 447 NDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVV 506
+ FY SD+I+ASP+ L M K E+ K++D D+LSSIE+ I+DHAD +LMQNW + +
Sbjct: 404 SQFYNSDIILASPLGLRTIMDK-EDEKKRDHDFLSSIEIAIVDHADGLLMQNWEHVEYIF 462
Query: 507 EQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVK 566
E LN P + HG D R+R WYLD +R+ RQT++ + PE+N+ F+ H N GK K
Sbjct: 463 EHLNLQPKEAHGCDFSRVRTWYLDDRARYIRQTIVTTSFLTPEMNSLFSQHMQNVAGKAK 522
Query: 567 LACEYKGVLPKVLL--NVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQG----- 619
+ +Y G + +V L V+Q + RF++ K D R +YFT + P + S+ G
Sbjct: 523 ILPQYNGAITEVALPITVKQTFSRFDSTFALKEPDLRFKYFTTAILPALARSVTGKGEGN 582
Query: 620 --GIMLFLSSYFEFVRLRNFL----KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMIL 673
G ++F+ SY +FVR+RNF ++ N SF + +YTE S++SR+R F G+ ++L
Sbjct: 583 GAGTLIFIPSYLDFVRVRNFFSTSSRATNISFGAISEYTEQSEMSRSRSHFMSGRLSVLL 642
Query: 674 YTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML----------EGSHNMTCTVLF 723
YTER+H + RY IRG++++I Y LPE F+ E+V L G+ + +F
Sbjct: 643 YTERAHHFRRYNIRGVKHVIFYGLPENPIFFREVVQYLGLDPGALAGSAGAETLDVRAVF 702
Query: 724 SRFDMLRLERIVGSAHAKKMVKSEKG 749
S++D +LERIVG+ A M+K + G
Sbjct: 703 SKYDAFKLERIVGTQRAANMLKEKGG 728
|
DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) (taxid: 441960) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| 225446285 | 753 | PREDICTED: digestive organ expansion fac | 0.986 | 0.988 | 0.692 | 0.0 | |
| 297850164 | 748 | hypothetical protein ARALYDRAFT_471979 [ | 0.957 | 0.965 | 0.608 | 0.0 | |
| 18394518 | 754 | uncharacterized protein [Arabidopsis tha | 0.958 | 0.958 | 0.604 | 0.0 | |
| 15810523 | 754 | unknown protein [Arabidopsis thaliana] | 0.958 | 0.958 | 0.603 | 0.0 | |
| 449502996 | 710 | PREDICTED: U3 small nucleolar RNA-associ | 0.920 | 0.977 | 0.629 | 0.0 | |
| 449457259 | 670 | PREDICTED: U3 small nucleolar RNA-associ | 0.836 | 0.941 | 0.647 | 0.0 | |
| 255558730 | 721 | conserved hypothetical protein [Ricinus | 0.839 | 0.877 | 0.596 | 0.0 | |
| 356530314 | 675 | PREDICTED: U3 small nucleolar RNA-associ | 0.840 | 0.939 | 0.627 | 0.0 | |
| 356558294 | 633 | PREDICTED: U3 small nucleolar RNA-associ | 0.830 | 0.988 | 0.623 | 0.0 | |
| 357449401 | 682 | Digestive organ expansion factor-like pr | 0.823 | 0.910 | 0.591 | 0.0 |
| >gi|225446285|ref|XP_002267174.1| PREDICTED: digestive organ expansion factor homolog [Vitis vinifera] gi|296090307|emb|CBI40126.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/763 (69%), Positives = 621/763 (81%), Gaps = 19/763 (2%)
Query: 1 MGKQFVKKRG---LTNSKMSSKFDRNKRLRKIQEENGAHSSSPSSSEEASGEESSGDAVE 57
MGK+F +KRG L + +K+D +KR+R+ EE A S SPSSS E+S E+SSG A E
Sbjct: 1 MGKRFGRKRGARGLKGTNTPAKYDTSKRVRRRTEEKVASSPSPSSSGESSDEQSSGVASE 60
Query: 58 E-IIYKEPSVYDNLLMKLGSSSESVADAFKIRQRQEEGRSDSEEEGVGGPESLSESEQED 116
E ++YKEPS+YDNLL LG+ SES+A+A+K R+R EEGRSDSEE+ GG ESL+ SE+ED
Sbjct: 61 EEVVYKEPSMYDNLLFTLGTGSESLANAYKRRRRDEEGRSDSEEDINGGSESLTVSEEED 120
Query: 117 DISGEGTDSESRNCTTEGTLQQPGSIGIREQNEDA----DSVASDTDEEHGLGLNGQPSS 172
+ EGTD+ES + S I EQ+EDA D+ ASDTD+ H L ++ Q +
Sbjct: 121 N--EEGTDNES--------ARGHASESIMEQSEDAETEDDNEASDTDQMHDLDVDDQSAV 170
Query: 173 EASAHASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLY 232
AS SSF H G+ LSKEEVD+L+++K KY WE+PA DMS+CKW+GTGE FLKD N
Sbjct: 171 GASESTSSFTSHVGHKLSKEEVDNLTRRKWKYNWEMPAFDMSSCKWMGTGESFLKDVNTS 230
Query: 233 SDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDS 292
S Y LK KLYKHWL+ Y SGGNDFHSSKQR FFSLCNSYRDIL+ NKKPFYLKGQEEDS
Sbjct: 231 SGYDLKLKLYKHWLENYKTSGGNDFHSSKQRLFFSLCNSYRDILYCNKKPFYLKGQEEDS 290
Query: 293 NIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLP 352
IM+ Y+MH+LNHIFRT DLVTKND+KVAK++ + KE IL GD+FLD GFTRPKVLILLP
Sbjct: 291 CIMDAYIMHALNHIFRTGDLVTKNDSKVAKHQETVKEEILTGDSFLDHGFTRPKVLILLP 350
Query: 353 LKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412
L SIAL VVKRLI+LTP + KVNVEHIDRF DEFGT E+D++ ++ Q ++ S
Sbjct: 351 LASIALRVVKRLIQLTPSSSKVNVEHIDRFSDEFGTGVVEDDQEQNELFQKVQDYENSIV 410
Query: 413 QKS-KPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEE 471
QKS KPSD+Q LFG NN+D+F IGIKFTR++IKLY+DFY+SDMI+ASP+ L K+ +AE
Sbjct: 411 QKSSKPSDFQALFGANNNDHFMIGIKFTRRTIKLYSDFYSSDMIIASPLGLITKIGEAEV 470
Query: 472 NKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531
KE+DVDYLSSIEVL+IDHAD+I MQNWS + VVEQLNRIPSKQHGTD+MRIRQWYLDG
Sbjct: 471 EKEKDVDYLSSIEVLVIDHADVISMQNWSHVNSVVEQLNRIPSKQHGTDIMRIRQWYLDG 530
Query: 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNA 591
+++FYRQT++L + NP++NA FNHHC NYQGKVKL CEYKG L KVLL VRQIYERF+A
Sbjct: 531 HAQFYRQTIILGSYLNPDMNASFNHHCVNYQGKVKLVCEYKGALAKVLLQVRQIYERFDA 590
Query: 592 DSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY 651
DS+ +DDAR EYFT KVFPKIKDSIQGGIMLF+SSYFE+VR+RNFLKSQNASFCLLG+Y
Sbjct: 591 DSVVDSDDARFEYFTTKVFPKIKDSIQGGIMLFVSSYFEYVRIRNFLKSQNASFCLLGEY 650
Query: 652 TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML 711
T+ SDISRARVWFFEGKRK++LYTER+HFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML
Sbjct: 651 TKQSDISRARVWFFEGKRKIMLYTERAHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML 710
Query: 712 EGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
EGSHNMTCTVLFSRFD RLERIVGS AK+MV SEK VFVFC
Sbjct: 711 EGSHNMTCTVLFSRFDQFRLERIVGSGPAKRMVASEKNVFVFC 753
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850164|ref|XP_002892963.1| hypothetical protein ARALYDRAFT_471979 [Arabidopsis lyrata subsp. lyrata] gi|297338805|gb|EFH69222.1| hypothetical protein ARALYDRAFT_471979 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/746 (60%), Positives = 559/746 (74%), Gaps = 24/746 (3%)
Query: 19 KFDRNKRLRKIQEENGAHSSSPSSSEEASGEESSGDA-VEEIIYKEPSVYDNLLMKLGSS 77
KFD+ + +K + A S+PS + S EE S + E ++Y+EP+ Y +LL LGSS
Sbjct: 17 KFDKKRDTKKHKHVEKAVVSNPSIEDPDSPEEDSIETESEAMLYREPTQYQHLLASLGSS 76
Query: 78 SESVADAFKIRQRQEEGRSDSEEEGV----GGPESLSESEQEDDISGEGTDSESRNCTTE 133
++ VAD K RQR+EEG+SD+EE+ G E LS + +DD +G D E T
Sbjct: 77 NKVVADMNKRRQREEEGKSDTEEDEDEEENSGSEDLSSIDGDDD-KIQGDDQE----TLR 131
Query: 134 GTLQQPGSIGIREQNEDADSVASDTDEEHGLGLNGQPSSEASAHASSFHEHFGYNLSKEE 193
G + + Q+E+ D +TDEEH L NGQ +AS+ S+F EH + LS EE
Sbjct: 132 GLMMENND----NQSEEEDPDDYETDEEHDLSTNGQSFVDASSSVSAFSEHLSHKLSSEE 187
Query: 194 VDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSD--YGLKPKLYKHWLDIYNK 251
V+ L K K K++WE A DM NC+W GT E FL D + SD YGLKPKLYKHWL +Y K
Sbjct: 188 VNTLPKGKWKFKWESLAFDMPNCRWKGTSENFL--DGIQSDATYGLKPKLYKHWLQLYKK 245
Query: 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRD 311
SGG D SSK+R FFS+CN+Y DILHSNKKPFY G +EDS+ M+ YLMHSLNHIF+TRD
Sbjct: 246 SGGKDLDSSKRRKFFSICNNYLDILHSNKKPFYHSGSDEDSSAMDAYLMHSLNHIFKTRD 305
Query: 312 LVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDA 371
LV KN++K+AK++ ++E IL D FLD+GFTRPKVLILLPL+SIA VVKRLI+LTP++
Sbjct: 306 LVKKNESKIAKHREISEEEILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQLTPES 365
Query: 372 HKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKS-KPSDYQILFGG-NND 429
+V+VEH+DRF DEFG EE DD D +N S +QKS KPSD+Q LFG NND
Sbjct: 366 QRVSVEHLDRFNDEFGC---EEATDDGDVEKNTSKKGNSTTQKSSKPSDWQSLFGASNND 422
Query: 430 DNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIID 489
D F +GIK TRKSI+LY DFY+SD+I+ASP+ L +AEENKE+DVDYLSSIEVL+ID
Sbjct: 423 DEFMLGIKHTRKSIRLYGDFYSSDIIIASPLKLQMTFGQAEENKERDVDYLSSIEVLVID 482
Query: 490 HADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549
HADII MQNWS+L VV+ LNR+PSKQHGT+VMRIR YLDG++RFYRQ+++LS + PE
Sbjct: 483 HADIISMQNWSFLATVVDHLNRLPSKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPE 542
Query: 550 INAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKV 609
+N+ FN HC NY+GK+KLACEYKGVL KVLL VRQIYERF+ADSI + DDARLEYFTKK+
Sbjct: 543 MNSLFNRHCLNYKGKMKLACEYKGVLEKVLLPVRQIYERFDADSITQVDDARLEYFTKKI 602
Query: 610 FPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKR 669
FPKI+DS+QGG+M+F+ SYFEFVRLRNFL +QN SFCLLGDY + +DISRAR FF G R
Sbjct: 603 FPKIRDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGDYAKNADISRARERFFVGSR 662
Query: 670 KMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML-EGSHNMTCTVLFSRFDM 728
K++LYTER++FY RYKIRGI+NLI YSLPERKEFYPEI+NML EGSH M T LFSRFDM
Sbjct: 663 KVMLYTERAYFYKRYKIRGIKNLIFYSLPERKEFYPEIMNMLEEGSHEMMSTALFSRFDM 722
Query: 729 LRLERIVGSAHAKKMVKSEKGVFVFC 754
L+LERIVGS AK+M+ SEK +F FC
Sbjct: 723 LQLERIVGSTSAKRMISSEKNMFAFC 748
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394518|ref|NP_564032.1| uncharacterized protein [Arabidopsis thaliana] gi|23297505|gb|AAN12983.1| unknown protein [Arabidopsis thaliana] gi|332191501|gb|AEE29622.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/751 (60%), Positives = 562/751 (74%), Gaps = 28/751 (3%)
Query: 19 KFDRNKRLRKIQEENGAHSSSPSSSEEASGEESSGDAVEEIIYKEPSVYDNLLMKLGSSS 78
KFD+ + +K + S+PS+ ++ E S E ++Y+EP+ Y NLL+ LGSS+
Sbjct: 17 KFDKKRDTKKHKHVEKTIVSNPST--DSPEESSIEAESEAMVYREPTQYQNLLVSLGSSN 74
Query: 79 ESVADAFKIRQRQEEGRSDSEEEGV---------GGPESLSESEQEDDISGEGTDSESRN 129
+ VAD K RQR+EEG+SD+EE+ G + LS ++ EDD S +G D E+
Sbjct: 75 KVVADMNKRRQREEEGKSDTEEDEDDEDEDEEENSGSDDLSSTDGEDDKS-QGDDQETLG 133
Query: 130 CTTEGTLQQPGSIGIREQNEDADSVASDTDEE-HGLGLNGQPSSEASAHASSFHEHFGYN 188
T+ T + + Q+E+ D +TDEE H L NGQ +AS+ S+F EH +
Sbjct: 134 GLTDDTQEDNDN-----QSEEEDPDDYETDEEVHELSTNGQSFVDASSSISAFSEHLSHK 188
Query: 189 LSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSD--YGLKPKLYKHWL 246
LS EEV+ L K K K++WE PA DM NCKW GT E FL D + SD YGLKPKLY HWL
Sbjct: 189 LSSEEVETLPKGKWKFKWESPAFDMPNCKWKGTSENFL--DGIQSDAPYGLKPKLYNHWL 246
Query: 247 DIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306
+Y K GG D SSK+R FFS+CNSY DILHSNKKPFY G +EDS+ M+ YLMHSLNHI
Sbjct: 247 QLYKKCGGKDLDSSKRRKFFSICNSYLDILHSNKKPFYHCGSDEDSSAMDAYLMHSLNHI 306
Query: 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIR 366
F+TRDLV KN++K+AK++ +++E IL D FLD+GFTRPKVLILLPL+SIA VVKRLI+
Sbjct: 307 FKTRDLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQ 366
Query: 367 LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKS-KPSDYQILFG 425
LTP++ +VNVEH+DRF DEFG EED DD D + S QKS KPSD+Q LFG
Sbjct: 367 LTPESQRVNVEHLDRFNDEFGC---EEDTDDCDGEKTTSKNGNSIKQKSSKPSDWQALFG 423
Query: 426 GNN-DDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIE 484
NN DD F +GIK TRKSI+LY DFY+SD+IVASP+ LH + AEENKE+DVDYLSSIE
Sbjct: 424 ANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIE 483
Query: 485 VLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544
VL+IDHADII MQNWS+L VV+ LNR+P+KQHGT+VMRIR YLDG++RFYRQ+++LS
Sbjct: 484 VLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSS 543
Query: 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEY 604
+ PE+N+ F HC NY+GK+K+ACEYKGVL KVLL VRQIYERF+A SI + DDARLEY
Sbjct: 544 YLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEY 603
Query: 605 FTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWF 664
FTKK+FPKIKDS+QGG+M+F+ SYFEFVRLRNFL +QN SFCLLGDY + +DISRAR F
Sbjct: 604 FTKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGDYAKNADISRAREQF 663
Query: 665 FEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML-EGSHNMTCTVLF 723
F G RK++LYTER++FY RYKIRGI+NLI+YSLPERKEFYPEI+NML EGSH+M T LF
Sbjct: 664 FVGSRKIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPEIMNMLEEGSHDMMSTALF 723
Query: 724 SRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
SRFDML+LERIVGS AK+M+ SEK +F FC
Sbjct: 724 SRFDMLQLERIVGSTSAKRMITSEKNMFAFC 754
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15810523|gb|AAL07149.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/751 (60%), Positives = 561/751 (74%), Gaps = 28/751 (3%)
Query: 19 KFDRNKRLRKIQEENGAHSSSPSSSEEASGEESSGDAVEEIIYKEPSVYDNLLMKLGSSS 78
KFD+ + +K + S+PS+ ++ E S E ++Y+EP+ Y NLL+ LGSS+
Sbjct: 17 KFDKKRDTKKHKHVEKTIVSNPST--DSPEESSIEAESEAMVYREPTQYQNLLVSLGSSN 74
Query: 79 ESVADAFKIRQRQEEGRSDSEEEGV---------GGPESLSESEQEDDISGEGTDSESRN 129
+ VAD K RQR+EEG+SD+EE+ G + LS ++ EDD S +G D E+
Sbjct: 75 KVVADMNKRRQREEEGKSDTEEDEDDEDEDEEENSGSDDLSSTDGEDDKS-QGDDQETLG 133
Query: 130 CTTEGTLQQPGSIGIREQNEDADSVASDTDEE-HGLGLNGQPSSEASAHASSFHEHFGYN 188
T+ T + + Q+E+ D +TDEE H L NGQ +AS+ S+F EH +
Sbjct: 134 GLTDDTQEDNDN-----QSEEEDPDDYETDEEVHELSTNGQSFVDASSSISAFSEHLSHK 188
Query: 189 LSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSD--YGLKPKLYKHWL 246
LS EEV+ L K K K++WE PA DM NCKW GT E FL D + SD YGLKPKLY HWL
Sbjct: 189 LSSEEVETLPKGKWKFKWESPAFDMPNCKWKGTSENFL--DGIQSDAPYGLKPKLYNHWL 246
Query: 247 DIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306
+Y K GG D SSK+R FFS+CNSY DILHSNKKPFY G +EDS+ M+ YLMHSLNHI
Sbjct: 247 QLYKKCGGKDLDSSKRRKFFSICNSYLDILHSNKKPFYHCGSDEDSSAMDAYLMHSLNHI 306
Query: 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIR 366
F+TRDLV KN++K+AK++ +++E IL D FLD+GFTRPKVLILLPL+SIA VVKRLI+
Sbjct: 307 FKTRDLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQ 366
Query: 367 LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKS-KPSDYQILFG 425
LTP++ +VNVEH+DRF DEFG EED DD D + S QKS KPSD+Q LFG
Sbjct: 367 LTPESQRVNVEHLDRFNDEFGC---EEDTDDCDGEKTTSKNGNSIKQKSSKPSDWQALFG 423
Query: 426 GNN-DDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIE 484
NN DD F +GIK TRKSI+LY DFY+SD+IVASP+ LH + AEENKE+DVDYLSSIE
Sbjct: 424 ANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIE 483
Query: 485 VLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544
VL+IDHADII MQNWS+L VV+ LNR+P+KQHGT+VMRIR YLDG++RFYRQ+++LS
Sbjct: 484 VLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSS 543
Query: 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEY 604
+ PE+N+ F HC NY+GK+K+ACEYKGVL KVLL VRQIYERF+A SI + DDARLEY
Sbjct: 544 YLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIYERFDAASITQVDDARLEY 603
Query: 605 FTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWF 664
FTKK+FPKIKDS+QGG+M+F+ SYFEFVRLRNFL +QN SFCLLGDY + +DISRAR F
Sbjct: 604 FTKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGDYAKNADISRAREQF 663
Query: 665 FEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML-EGSHNMTCTVLF 723
F G RK++LYTER++FY RYKIRGI+NLI+YSLPERKEFYPEI+NML EGSH+M T LF
Sbjct: 664 FVGSRKIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPEIMNMLEEGSHDMMSTALF 723
Query: 724 SRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
SRFDML+L RIVGS AK+M+ SEK +F FC
Sbjct: 724 SRFDMLQLGRIVGSTSAKRMITSEKNMFAFC 754
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449502996|ref|XP_004161801.1| PREDICTED: U3 small nucleolar RNA-associated protein 25-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/705 (62%), Positives = 544/705 (77%), Gaps = 11/705 (1%)
Query: 54 DAVEEIIYKEPSVYDNLLMKLGSSSESVADAFKIRQRQEEGRSDSEEEGVGGPES---LS 110
+A E ++ E S Y+NLLM+L S + VA + RQRQEEG+SD+E++ ES L
Sbjct: 13 EAEELEVFTEQSNYENLLMQLQSRHKDVAASCMKRQRQEEGKSDTEDDEDNCSESSSALE 72
Query: 111 ESEQEDDISGEGTDSESRNCTTEGTLQQPGSIGIREQNEDADSVASDTDEEHGLGLNGQP 170
E E+E++ E TD ESR + G + + E +DADS SDTD+E+ L
Sbjct: 73 EEEEEEEEEEEVTDDESRRSPSSGNSMYEPVLNV-ETEDDADS--SDTDQENELEFGSHS 129
Query: 171 SSEASAHASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKD-D 229
S SSF++H + LS+ EV++ K K KY W VPAV M NCKW GTGECFLK+ D
Sbjct: 130 GPSTSDITSSFNKHMEHKLSEGEVENFLKMKWKYTWAVPAVGMPNCKWSGTGECFLKELD 189
Query: 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQE 289
S Y LK +LY+HWLD Y S G DFHSS+QR FFSLCNSYRDIL+ NKKPFYLKG E
Sbjct: 190 MKPSSYDLKLRLYEHWLDTYKSSRGTDFHSSRQRFFFSLCNSYRDILYCNKKPFYLKGLE 249
Query: 290 EDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLI 349
EDS+IM++Y+MHSLNH+F+ RDL+ KND+KVAK++ A+ IL G+ FLD GFTRPKVLI
Sbjct: 250 EDSSIMDSYIMHSLNHVFKARDLIAKNDSKVAKHQDCAE--ILSGEKFLDHGFTRPKVLI 307
Query: 350 LLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRK 409
LLPL SIA V+KRL+ LTP A+KV VE++DR +FG ++ K+ D ++
Sbjct: 308 LLPLASIAFRVIKRLVHLTPSANKVTVEYLDRLFKDFGNG--DDGKNQDMVELSLNDQSS 365
Query: 410 SNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469
S+ + SKPSD+Q LFGGNN+D F IGIKFTRKSIKL++DFY+SD+IVASP+ L K+ +
Sbjct: 366 SSQKSSKPSDFQALFGGNNEDLFMIGIKFTRKSIKLFSDFYSSDIIVASPLGLITKLGEI 425
Query: 470 EENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYL 529
E+NKE+DVDYLSSIEVLIIDHADII MQNWS + V+E +N+IPSKQHGTDVMRIRQWYL
Sbjct: 426 EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNTVIEHMNKIPSKQHGTDVMRIRQWYL 485
Query: 530 DGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERF 589
DG++RFYRQ+V+L +H NP+IN FF +C N++GKVKL CEYKGVLPKV+L VRQ+YERF
Sbjct: 486 DGHARFYRQSVVLGFHSNPDINGFFVRYCNNFEGKVKLLCEYKGVLPKVVLQVRQVYERF 545
Query: 590 NADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLG 649
++DSIA DDARLEYF+KKVFPKI +S QGG+MLF+SSYFEFVR+RNFLK+QNASFCLLG
Sbjct: 546 DSDSIADVDDARLEYFSKKVFPKINESSQGGVMLFISSYFEFVRVRNFLKAQNASFCLLG 605
Query: 650 DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709
+YT+ SDISRAR WFFEGKRK++LYTER+HFYHRYKIRGIQNLI+YS PERKEFYPEIVN
Sbjct: 606 EYTKQSDISRARNWFFEGKRKIMLYTERAHFYHRYKIRGIQNLIMYSPPERKEFYPEIVN 665
Query: 710 MLEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
ML+ S +MTC VLFS FD LRLERIVG+ AKKM SEK VF+FC
Sbjct: 666 MLDESQSMTCRVLFSPFDQLRLERIVGTVPAKKMTTSEKKVFIFC 710
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457259|ref|XP_004146366.1| PREDICTED: U3 small nucleolar RNA-associated protein 25-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/639 (64%), Positives = 502/639 (78%), Gaps = 8/639 (1%)
Query: 117 DISGEGTDSESRNCTTEGTLQQPGSIGIREQNEDADSVASDTDEEHGLGLNGQPSSEASA 176
D++ TD ESR + G + + E +DADS SDTD+E+ L S
Sbjct: 39 DVAASLTDDESRRSPSSGNSMYEPVLNV-ETEDDADS--SDTDQENELEFGSHSGPSTSD 95
Query: 177 HASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKD-DNLYSDY 235
SSF++H + LS+ EV++ K K KY W VPAV M NCKW GTGECFLK+ D S Y
Sbjct: 96 ITSSFNKHMEHKLSEGEVENFLKMKWKYTWAVPAVGMPNCKWSGTGECFLKELDMKPSSY 155
Query: 236 GLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIM 295
LK +LY+HWLD Y S G DFHSS+QR FFSLCNSYRDIL+ NKKPFYLKG EEDS+IM
Sbjct: 156 DLKLRLYEHWLDTYKSSRGTDFHSSRQRFFFSLCNSYRDILYCNKKPFYLKGLEEDSSIM 215
Query: 296 ETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKS 355
++Y+MHSLNH+F+ RDL+ KND+KVAK++ A+ IL G+ FLD GFTRPKVLILLPL S
Sbjct: 216 DSYIMHSLNHVFKARDLIAKNDSKVAKHQDCAE--ILSGEKFLDHGFTRPKVLILLPLAS 273
Query: 356 IALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKS 415
IA V+KRL+ LTP A+KV VE++DR +FG ++ K+ D ++ S+ + S
Sbjct: 274 IAFRVIKRLVHLTPSANKVTVEYLDRLFKDFGNG--DDGKNQDMVELSLNDQSSSSQKSS 331
Query: 416 KPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ 475
KPSD+Q LFGGNN+D F IGIKFTRKSIKL++DFY+SD+IVASP+ L K+ + E+NKE+
Sbjct: 332 KPSDFQALFGGNNEDLFMIGIKFTRKSIKLFSDFYSSDIIVASPLGLITKLGEIEKNKEK 391
Query: 476 DVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRF 535
DVDYLSSIEVLIIDHADII MQNWS + V+E +N+IPSKQHGTDVMRIRQWYLDG++RF
Sbjct: 392 DVDYLSSIEVLIIDHADIIAMQNWSHVNTVIEHMNKIPSKQHGTDVMRIRQWYLDGHARF 451
Query: 536 YRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIA 595
YRQ+V+L +H NP+IN FF +C N++GKVKL CEYKGVLPKV+L VRQ+YERF++DSIA
Sbjct: 452 YRQSVVLGFHSNPDINGFFVRYCNNFEGKVKLLCEYKGVLPKVVLQVRQVYERFDSDSIA 511
Query: 596 KADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPS 655
DDARLEYF+KKVFPKI +S QGG+MLF+SSYFEFVR+RNFLK+QNASFCLLG+YT+ S
Sbjct: 512 DVDDARLEYFSKKVFPKINESSQGGVMLFISSYFEFVRVRNFLKAQNASFCLLGEYTKQS 571
Query: 656 DISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715
DISRAR WFFEGKRK++LYTER+HFYHRYKIRGIQNLI+YS PERKEFYPEIVNML+ S
Sbjct: 572 DISRARNWFFEGKRKIMLYTERAHFYHRYKIRGIQNLIMYSPPERKEFYPEIVNMLDESQ 631
Query: 716 NMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
+MTC VLFS FD L LERIVG+ AKKM SEK VF+FC
Sbjct: 632 SMTCRVLFSPFDQLPLERIVGTVPAKKMTTSEKKVFIFC 670
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558730|ref|XP_002520389.1| conserved hypothetical protein [Ricinus communis] gi|223540436|gb|EEF42005.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/699 (59%), Positives = 516/699 (73%), Gaps = 66/699 (9%)
Query: 88 RQRQEEGRSDSEEEGVGGPESLSESEQEDDISGEGTDSES-RNCTTEGTLQQPGSIGIRE 146
RQR+EE RSDSE++ SLSE E+D + TD E + E +Q+P +I I
Sbjct: 13 RQREEEARSDSEDD----YGSLSE---EEDAGEQRTDDELLKKHEIESEMQKPSTISIEA 65
Query: 147 QNED----ADSVASDTDEEHGLGLNGQPSSEA---------------------------- 174
+NED D SDTD+EH + +N Q S+ +
Sbjct: 66 RNEDDVSEHDQDKSDTDQEHSMDVNVQVSTRSEYLQIAAIENLFNNINSSGSYEGIFKDH 125
Query: 175 -------------------SAHASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSN 215
SFH H G NLS+EEV +LS KK +Y+WEVPA N
Sbjct: 126 SIMYSCFFNTNEDGSFGCSQVFFCSFHVHLGSNLSEEEVQNLSNKKWEYKWEVPAFGKLN 185
Query: 216 CKWVGTGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDI 275
CKWVGTGECFLKD N S YGLK +LYKHWLD Y KS GNDF+SSKQR FFSLCNSYRDI
Sbjct: 186 CKWVGTGECFLKDINKNSSYGLKERLYKHWLDAYKKSRGNDFYSSKQRLFFSLCNSYRDI 245
Query: 276 LHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGD 335
LH NK PFY+KG EEDS+I + Y++HSLNHI TRDLV KND+KVAK++ A+E +L D
Sbjct: 246 LHCNKNPFYIKGVEEDSSIKDAYIIHSLNHILSTRDLVRKNDSKVAKHQKGAEEELLTID 305
Query: 336 AFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDK 395
FLD GFTRPK+LILLP++SIAL VVKRLI+LTP A+KVNVEH++RF +EFGT ++D+
Sbjct: 306 GFLDHGFTRPKILILLPIRSIALRVVKRLIQLTPQAYKVNVEHVERFYNEFGT---QDDE 362
Query: 396 DDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMI 455
D D+ +QN+ ++ S SKPSD+Q LFGGNNDDNF IGIKFTR+SIKLY+DFY+SDMI
Sbjct: 363 DGDEFAQNVGNSKPLKS--SKPSDHQALFGGNNDDNFMIGIKFTRRSIKLYSDFYSSDMI 420
Query: 456 VASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSK 515
VASP+ +H ++ +A NKE+D D+LSSIEVL+IDHAD+I MQNW++L V++ LN+IPSK
Sbjct: 421 VASPVAVHGRIEEAMGNKEKDFDFLSSIEVLVIDHADVIAMQNWNFLTNVLDHLNQIPSK 480
Query: 516 QHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVL 575
QHGTD+MRIR+WYLD ++FYRQT++L + NP++ A FNH C NY GKVKL C++KG+L
Sbjct: 481 QHGTDIMRIRKWYLDEKAKFYRQTIILGDYVNPDVYATFNHQCLNYNGKVKLVCKHKGIL 540
Query: 576 PKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR 635
KV VRQIYERF+ +SIA AD AR EYF KKVFPKIKDS QGGIMLF+SSYFE+V+LR
Sbjct: 541 TKVEHQVRQIYERFDVNSIADADGARHEYFAKKVFPKIKDSTQGGIMLFVSSYFEYVKLR 600
Query: 636 NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIY 695
N+LKSQNASFC L DYT+PSDISRAR+WFFEGK+K++LYTER HFY RYKIRGI+NLI+Y
Sbjct: 601 NYLKSQNASFCALADYTKPSDISRARLWFFEGKKKIMLYTERVHFYRRYKIRGIKNLIVY 660
Query: 696 SLPERKEFYPEIVNMLEGSH--NMTCTVLFSRFDMLRLE 732
SLP+RK+FYPE++NM+E + NMTCTVLFS+FD LR++
Sbjct: 661 SLPDRKDFYPEMLNMIEEENHSNMTCTVLFSKFDQLRVK 699
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530314|ref|XP_003533727.1| PREDICTED: U3 small nucleolar RNA-associated protein 25-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/652 (62%), Positives = 506/652 (77%), Gaps = 18/652 (2%)
Query: 106 PESLSESEQEDDISGEGTDSES-RNCTTEGTLQQP--GSIGIREQNEDADSVASDTDEEH 162
PES S E + D GEG D ES R+ E Q P G+ E +E + V +DEE
Sbjct: 38 PESRSMLEYDHD-EGEGFDHESPRSKVVESLWQDPDVNDSGLTEGSETKEDVGFHSDEE- 95
Query: 163 GLGLNGQPSSEASAHASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTG 222
+G+ GQP+S+ S H SSF H +NLSKEE+D ++ K+ WE PA+ MSNCKW+GTG
Sbjct: 96 DIGITGQPTSDDSLHLSSFDLHLQHNLSKEEID--GQRNRKFSWETPAIGMSNCKWIGTG 153
Query: 223 ECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKP 282
E L+D ++ S +GLK KL +HW+D+Y +GG D S KQ+ FFSLC+SYRDIL+ NK+P
Sbjct: 154 ENILEDLDINSCHGLKSKLSEHWMDVYRTAGGKDISSPKQKIFFSLCSSYRDILYCNKRP 213
Query: 283 FYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGF 342
FYLKG E D++IM+ Y+MHSLNH+FRTRD V KND+K+ K K +A D F D+GF
Sbjct: 214 FYLKGLE-DTSIMDAYIMHSLNHVFRTRDCVKKNDSKLTKLKENAD-----SDKFRDQGF 267
Query: 343 TRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402
TRPKVLILLPL SI VVKRLI+LTP A KVNVEH+DRF +FG+++ + + ++DD S+
Sbjct: 268 TRPKVLILLPLASIVYRVVKRLIQLTPSAFKVNVEHMDRFSTKFGSEEHKGNTENDDESE 327
Query: 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL 462
N + + S K +D+QILFGGNN+D+F IGIKFTRK+IKL++DF+TSD+I+AS + L
Sbjct: 328 NAKPQKSS-----KATDFQILFGGNNEDDFMIGIKFTRKTIKLFSDFHTSDIIIASALCL 382
Query: 463 HQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVM 522
K+ +A NKE+DVD+LSSIEVLIIDHAD+I MQNWS + V+E LNR+PSKQ GTDVM
Sbjct: 383 VNKIEEAGSNKEKDVDFLSSIEVLIIDHADVISMQNWSHVHTVIEHLNRLPSKQLGTDVM 442
Query: 523 RIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNV 582
RIR WYLD ++RFYRQT++L + NP++NA FNH C NY+GKVKL EYKGVL KV+ +
Sbjct: 443 RIRPWYLDDHARFYRQTIILGLYSNPDVNASFNHQCLNYEGKVKLISEYKGVLHKVVPEI 502
Query: 583 RQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQN 642
RQIYERFN DSI +ADDAR +YF KKVFP+IKD QGG MLF +SYFEF+R+RNFLKSQN
Sbjct: 503 RQIYERFNVDSIVEADDARFDYFVKKVFPRIKDLDQGGTMLFTNSYFEFIRIRNFLKSQN 562
Query: 643 ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE 702
ASFCLLG+YT SDISRAR+WF+EGKRK+++YTERSHFYHRYKIRG+QNLIIYSLPERKE
Sbjct: 563 ASFCLLGEYTTQSDISRARLWFYEGKRKIMVYTERSHFYHRYKIRGVQNLIIYSLPERKE 622
Query: 703 FYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
FYPEIVNML+GS NMTCTVLFS D LRLERIVG+ AK+MV +EKGVFVFC
Sbjct: 623 FYPEIVNMLDGSDNMTCTVLFSYLDKLRLERIVGTTPAKRMVAAEKGVFVFC 674
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558294|ref|XP_003547442.1| PREDICTED: U3 small nucleolar RNA-associated protein 25-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/645 (62%), Positives = 492/645 (76%), Gaps = 19/645 (2%)
Query: 114 QEDDISGEGTDSES-RNCTTEGTLQQP--GSIGIREQNEDADSVASDTDEEHGLGLNGQP 170
+ D GEG D+ES R+ E Q P G+ E +E + V +DEE +G+NGQP
Sbjct: 3 ENDHDEGEGFDNESPRSKVVESLWQDPDVNDSGLTEGSETEEDVGFHSDEE-DIGINGQP 61
Query: 171 SSEASAHASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDN 230
SE S H SSF H +NLSKEE+D S++ K+ WE PA+ MSNCKW+GTGE L+D +
Sbjct: 62 ISEDSLHLSSFDLHLQHNLSKEEID--SQRNRKFSWETPAIGMSNCKWIGTGENILEDLD 119
Query: 231 LYSDYGLKPKLYKHWLDIYNK-SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQE 289
+ S +GLK KL KHW+D YN+ SGG D S KQ+ FFSLCNSYRDILH NK+PFYLKG E
Sbjct: 120 INSCHGLKSKLSKHWMDAYNRTSGGKDISSPKQKMFFSLCNSYRDILHCNKRPFYLKGLE 179
Query: 290 EDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLI 349
D++IM+ Y+MHSLNH+FRTRD KND K+ K K +A D F D+ FTRPKVLI
Sbjct: 180 -DTSIMDAYIMHSLNHVFRTRD-CEKNDAKLTKLKENAD-----SDRFRDQCFTRPKVLI 232
Query: 350 LLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRK 409
LLPL SI VVKRLI+LTP A+ VNVEH+DRF +FG+++ + D ++ S+N + +
Sbjct: 233 LLPLASIVYRVVKRLIQLTPSAYMVNVEHMDRFSTKFGSEEHKGDIENGKESENAKPHKS 292
Query: 410 SNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469
S K +D+QILFGGNN+D+F IGIKFTRK++KL++DF+TSD+I+A + L K+ +A
Sbjct: 293 S-----KVADFQILFGGNNEDDFMIGIKFTRKTVKLFSDFHTSDIIIALALCLVNKIEEA 347
Query: 470 EENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYL 529
NKE+DVD+LSS+EVLIIDHAD+ MQNW + V+E LNR+PSKQ GTDVMRIR WYL
Sbjct: 348 GSNKEKDVDFLSSLEVLIIDHADVTSMQNWYHVHTVIEHLNRLPSKQPGTDVMRIRPWYL 407
Query: 530 DGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERF 589
D +SRFYRQTV+L ++ NP++NA FNH C NY+GKVKL E KGVL KVL +RQIYERF
Sbjct: 408 DDHSRFYRQTVILGFYSNPDVNASFNHQCLNYEGKVKLINECKGVLHKVLPKIRQIYERF 467
Query: 590 NADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLG 649
N DSI +ADDAR +YF KKV P+I D QGG MLF +SYFEF+R+RNFLKSQNASFCLLG
Sbjct: 468 NVDSIVEADDARFDYFVKKVLPRINDLDQGGTMLFTNSYFEFIRIRNFLKSQNASFCLLG 527
Query: 650 DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709
+YT SDISRARV F+EGKRK+++YTERSHFYHRYKIRG+QNLIIYSLPERKEFYPEIVN
Sbjct: 528 EYTTQSDISRARVCFYEGKRKILVYTERSHFYHRYKIRGVQNLIIYSLPERKEFYPEIVN 587
Query: 710 MLEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
ML+GS NMTCT LFS D LRLERIVG+ AK+MV +EKGVFVFC
Sbjct: 588 MLDGSDNMTCTALFSYLDKLRLERIVGTTPAKRMVVAEKGVFVFC 632
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449401|ref|XP_003594977.1| Digestive organ expansion factor-like protein [Medicago truncatula] gi|355484025|gb|AES65228.1| Digestive organ expansion factor-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/651 (59%), Positives = 474/651 (72%), Gaps = 30/651 (4%)
Query: 115 EDDISGEGTDSESRNCTTEGTLQQ------PGSIGIREQNEDADSVASDTDEEHGLGLNG 168
EDD GEG+D +S G+LQQ G I E ED + SD E + NG
Sbjct: 50 EDDHDGEGSDIDSPRSNVVGSLQQNYDDNDSGLIEGSETEEDNEFSHSD---EEDIRTNG 106
Query: 169 QPSSEASAHASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKD 228
+SE S SSF H +NLSKEE+D S+K LK+ W+VP + +SNCKW GTGE LKD
Sbjct: 107 GATSEDSVDLSSFDLHLQHNLSKEEID--SQKNLKFSWDVPVIGVSNCKWRGTGENILKD 164
Query: 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQ 288
N+ S GLK KLY+HW+D+ SGG D +S KQ+ FFSLC+SYRDIL+ NK+PFYLKG
Sbjct: 165 FNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLCSSYRDILYCNKRPFYLKGL 224
Query: 289 EEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVL 348
E D++IM+ Y+MHSLNH+FRTRD V KND+K+A+ + A + F D+GFTRPKVL
Sbjct: 225 E-DTSIMDAYIMHSLNHVFRTRDRVKKNDSKLARIEEGAD-----TERFRDQGFTRPKVL 278
Query: 349 ILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTR 408
ILLP +IA VVKRLI+LTP A+KVNVEH+DRF +FG +EEDK D + G
Sbjct: 279 ILLPFANIAYRVVKRLIQLTPSAYKVNVEHMDRFSAKFG---DEEDKGDKE-----NGEE 330
Query: 409 KSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468
N+ KP DY++L +N+D+F IGIKFTRK+IKL++DF+TSD I+ASP+ L K+ +
Sbjct: 331 LENAYPQKPDDYKVLSPYHNEDDFMIGIKFTRKTIKLFSDFHTSDFIIASPLCLVNKIEE 390
Query: 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWY 528
E NKE+DVD+LSSIEVLIIDHAD++ MQNWS + V+E LNR+PS TDVMRIR WY
Sbjct: 391 TEINKEKDVDFLSSIEVLIIDHADVMTMQNWSHVRPVIEHLNRLPSTPPRTDVMRIRPWY 450
Query: 529 LDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYER 588
LD +RFYRQT++L ++ NPEI FNH C+NY+GKVKL CEYKGVL KVL ++Q+Y R
Sbjct: 451 LDEQARFYRQTIILGFYSNPEIITSFNHQCSNYEGKVKLMCEYKGVLQKVLPKIQQVYVR 510
Query: 589 FNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLL 648
FN +SI ADD R YF K+VFP+IKDS QGGIM+F SSYFEF+R+RNFLKSQNASFCL+
Sbjct: 511 FNIESIVDADDDRFNYFVKEVFPRIKDSDQGGIMIFASSYFEFIRIRNFLKSQNASFCLV 570
Query: 649 GDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708
G+YT DISRAR WFF+ +RK++LYTER HFY R+ IRG++NLI+YSLPERKE YPEIV
Sbjct: 571 GEYTTNQDISRARGWFFKAERKIMLYTERCHFYRRFPIRGVKNLIMYSLPERKELYPEIV 630
Query: 709 NMLEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKM-----VKSEKGVFVFC 754
N L+GS N CT LFSR D RLERIVG+ HA KM V SEK VFVFC
Sbjct: 631 NRLDGSENPQCTALFSRLDKYRLERIVGTTHATKMVATKKVASEKPVFVFC 681
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| TAIR|locus:2007933 | 754 | NOF1 "AT1G17690" [Arabidopsis | 0.917 | 0.917 | 0.610 | 2.7e-226 | |
| ZFIN|ZDB-GENE-021217-2 | 753 | diexf "digestive organ expansi | 0.445 | 0.446 | 0.427 | 2.4e-106 | |
| UNIPROTKB|Q68CQ4 | 756 | DIEXF "Digestive organ expansi | 0.616 | 0.615 | 0.384 | 1.8e-93 | |
| POMBASE|SPCC1827.01c | 652 | SPCC1827.01c "U3 associated pr | 0.450 | 0.521 | 0.402 | 1.3e-91 | |
| UNIPROTKB|A4R0E6 | 722 | UTP25 "U3 small nucleolar RNA- | 0.564 | 0.590 | 0.407 | 1.5e-91 | |
| DICTYBASE|DDB_G0289235 | 840 | DDB_G0289235 "Digestive organ | 0.444 | 0.398 | 0.379 | 2e-91 | |
| UNIPROTKB|A7YWC9 | 753 | LOC510385 "Uncharacterized pro | 0.847 | 0.848 | 0.328 | 4.6e-89 | |
| RGD|1359148 | 763 | Diexf "digestive organ expansi | 0.876 | 0.866 | 0.320 | 2.5e-88 | |
| ASPGD|ASPL0000055343 | 702 | AN1354 [Emericella nidulans (t | 0.396 | 0.425 | 0.445 | 2e-87 | |
| MGI|MGI:2138080 | 772 | Diexf "digestive organ expansi | 0.563 | 0.550 | 0.377 | 5.7e-86 |
| TAIR|locus:2007933 NOF1 "AT1G17690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2184 (773.9 bits), Expect = 2.7e-226, P = 2.7e-226
Identities = 430/704 (61%), Positives = 525/704 (74%)
Query: 59 IIYKEPSVYDNLLMKLGSSSESVADAFKIRQRQEEGRSDSEEEGVGGPESLSESEQEDDI 118
++Y+EP+ Y NLL+ LGSS++ VAD K RQR+EEG+SD+EE+ E E+ DD+
Sbjct: 55 MVYREPTQYQNLLVSLGSSNKVVADMNKRRQREEEGKSDTEEDEDDEDEDEEENSGSDDL 114
Query: 119 SG-EGTDSESRNCTTE--GTLQQPGSIGIREQNEDADSVASDTDEE-HGLGLNGQPXXXX 174
S +G D +S+ E G L Q+E+ D +TDEE H L NGQ
Sbjct: 115 SSTDGEDDKSQGDDQETLGGLTDDTQEDNDNQSEEEDPDDYETDEEVHELSTNGQSFVDA 174
Query: 175 XXXXXXXXXXXGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSD 234
+ LS EEV+ L K K K++WE PA DM NCKW GT E FL D + SD
Sbjct: 175 SSSISAFSEHLSHKLSSEEVETLPKGKWKFKWESPAFDMPNCKWKGTSENFL--DGIQSD 232
Query: 235 --YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDS 292
YGLKPKLY HWL +Y K GG D SSK+R FFS+CNSY DILHSNKKPFY G +EDS
Sbjct: 233 APYGLKPKLYNHWLQLYKKCGGKDLDSSKRRKFFSICNSYLDILHSNKKPFYHCGSDEDS 292
Query: 293 NIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLP 352
+ M+ YLMHSLNHIF+TRDLV KN++K+AK++ +++E IL D FLD+GFTRPKVLILLP
Sbjct: 293 SAMDAYLMHSLNHIFKTRDLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVLILLP 352
Query: 353 LKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTXXXXXXXXXXXASQNIRGTRKSNS 412
L+SIA VVKRLI+LTP++ +VNVEH+DRF DEFG + + K S
Sbjct: 353 LRSIAFRVVKRLIQLTPESQRVNVEHLDRFNDEFGCEEDTDDCDGEKTTSKNGNSIKQKS 412
Query: 413 QKSKPSDYQILFGGNN-DDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEE 471
SKPSD+Q LFG NN DD F +GIK TRKSI+LY DFY+SD+IVASP+ LH + AEE
Sbjct: 413 --SKPSDWQALFGANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEE 470
Query: 472 NKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531
NKE+DVDYLSSIEVL+IDHADII MQNWS+L VV+ LNR+P+KQHGT+VMRIR YLDG
Sbjct: 471 NKERDVDYLSSIEVLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDG 530
Query: 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNA 591
++RFYRQ+++LS + PE+N+ F HC NY+GK+K+ACEYKGVL KVLL VRQIYERF+A
Sbjct: 531 HARFYRQSIILSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQIYERFDA 590
Query: 592 DSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY 651
SI + DDARLEYFTKK+FPKIKDS+QGG+M+F+ SYFEFVRLRNFL +QN SFCLLGDY
Sbjct: 591 ASITQVDDARLEYFTKKIFPKIKDSVQGGVMIFIHSYFEFVRLRNFLNTQNTSFCLLGDY 650
Query: 652 TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML 711
+ +DISRAR FF G RK++LYTER++FY RYKIRGI+NLI+YSLPERKEFYPEI+NML
Sbjct: 651 AKNADISRAREQFFVGSRKIMLYTERAYFYKRYKIRGIKNLILYSLPERKEFYPEIMNML 710
Query: 712 E-GSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754
E GSH+M T LFSRFDML+LERIVGS AK+M+ SEK +F FC
Sbjct: 711 EEGSHDMMSTALFSRFDMLQLERIVGSTSAKRMITSEKNMFAFC 754
|
|
| ZFIN|ZDB-GENE-021217-2 diexf "digestive organ expansion factor homolog" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 148/346 (42%), Positives = 226/346 (65%)
Query: 416 KPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ 475
+P DY +F GN DD+F IG+ R S++LY FY+SD+I+ASP+ L + + AE K++
Sbjct: 402 RPDDYHAVFSGNIDDHFRIGMSILRHSMRLYAPFYSSDIIIASPLGL-RTVLGAEGEKKR 460
Query: 476 DVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRF 535
D D+LSSIE+LI+D AD+ LMQNW L+ V+E LN P HG D R+R W L+ ++ +
Sbjct: 461 DHDFLSSIELLIVDQADVFLMQNWEHLLHVLEHLNLQPLDSHGVDFSRVRMWNLNNWAAY 520
Query: 536 YRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYK-GVLPKVLLNVRQIYERFNADSI 594
YRQT++ S P+I HC NY+G+V K G + +VL+ + +++ F++DS
Sbjct: 521 YRQTLVFSAIQEPQITNILTKHCHNYRGQVCSKTIPKIGSICQVLVQLPHVFQMFHSDSF 580
Query: 595 AKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEP 654
DAR ++F K+ P+ +DS+ +++ SYF+FVRLRN+LK ++ SF + +Y++
Sbjct: 581 MD-QDARFQFFVDKILPQYRDSVMSHTFIYVPSYFDFVRLRNYLKKEDVSFANISEYSQR 639
Query: 655 SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNML--- 711
S++SRAR +F +G+++ +L++ER HFY RY I+GI NLI Y LP FY E+ NML
Sbjct: 640 SEVSRARHYFQKGEKQFLLFSERFHFYKRYTIKGIHNLIFYGLPTYPHFYSEVCNMLQAG 699
Query: 712 --EG--SHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
EG S + TCT L+SR+D+ RL I G+ A +M++S+K +F
Sbjct: 700 VREGGASVSFTCTALYSRYDVHRLAAITGADRAAQMLQSKKTTHLF 745
|
|
| UNIPROTKB|Q68CQ4 DIEXF "Digestive organ expansion factor homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
Identities = 192/500 (38%), Positives = 299/500 (59%)
Query: 262 QRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321
Q+ F + NSYRD+ + + LK EE I Y +H +NHI + V N+++
Sbjct: 279 QKELFLIMNSYRDLFYPERTA--LKNGEE---IRHVYCLHVINHILKANAQVLGNNSR-- 331
Query: 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP-DAHK-VNVEHI 379
+ S K G+ D F D+G TRPKVLI++P + AL VV+ I L D+ K + V +
Sbjct: 332 --RRSQKFGVGDDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNK 389
Query: 380 DRFCDEFGTXXXXXXXXXXXASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT 439
RF E+G+ R N ++ P DY+ +F GN DD+F IG+
Sbjct: 390 KRFQGEYGSDPEE---------------RPPNLKR--PEDYEAVFVGNIDDHFRIGVAIL 432
Query: 440 RKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499
++SI+LY FY+SD+++ASP+ L + + E K++D D+LSSIE+LIID ADI LMQNW
Sbjct: 433 QRSIRLYAPFYSSDILIASPLGL-RTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNW 491
Query: 500 SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA 559
++ ++ +N +P HG D R+R W L+ +S++YRQT+L + +IN+ FN +C
Sbjct: 492 EHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCV 551
Query: 560 NYQGKVKLA-CEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQ 618
N QG+V + G + VL+ + +++R A+++A DAR +F K+ P+ +D++
Sbjct: 552 NMQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAENLASVIDARFNFFVNKILPQYRDAVM 611
Query: 619 GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS 678
++++ SYF+FVRLRN+ K + +F + +YT+ S +SRAR +F +G+++ +L+TER
Sbjct: 612 SHTLIYIPSYFDFVRLRNYFKKEELNFTHICEYTQKSGVSRARHFFLQGEKQFLLFTERF 671
Query: 679 HFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHN-----MTCTVLFSRFDMLRLER 733
HFY RY I+GI+NLI Y LP FY EI NML ++ TCTVL+S++D RL
Sbjct: 672 HFYKRYTIKGIRNLIFYELPTYPHFYSEICNMLRATNRGEEATWTCTVLYSKYDAQRLAA 731
Query: 734 IVGSAHAKKMVKSEKGVFVF 753
+VG A +M++S K V +F
Sbjct: 732 VVGVERAAQMLQSNKNVHLF 751
|
|
| POMBASE|SPCC1827.01c SPCC1827.01c "U3 associated protein Utp25 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 1.3e-91, Sum P(3) = 1.3e-91
Identities = 141/350 (40%), Positives = 224/350 (64%)
Query: 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEE 471
S+K KP D++ LF GN DD F +G+KFTRK++KL++ FY SD+IVASP+ L + +
Sbjct: 304 SEK-KPEDFRYLFSGNTDDMFRLGVKFTRKTVKLFSQFYNSDIIVASPLGLRLAIGN-KG 361
Query: 472 NKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531
+K++D+DYLSSIE+ ++D A ++MQNW + + ++LN +P + HG D R+R WYLD
Sbjct: 362 DKKRDLDYLSSIEIAMVDQAHALVMQNWEHIECIFDELNGLPKEAHGCDFSRVRPWYLDQ 421
Query: 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNA 591
+R+ RQT+L S + N +IN+FF+H+ +N GKVK GVL ++ V Q + R +
Sbjct: 422 QARYMRQTILFSQYNNLDINSFFSHYMSNIAGKVKFRSLLHGVLNRLGYKVTQTFVRISV 481
Query: 592 DSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY 651
DSI K DAR YFT + ++K Q GI++++ SYF+FVR+RN++ + ++ + +Y
Sbjct: 482 DSIIKVPDARFSYFTGSILVQLKKYSQSGILVYIPSYFDFVRVRNYMDEEGINYSAISEY 541
Query: 652 TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNM- 710
+ SD++RAR F++G+ ++LYTER+H + R+ RG++ +++Y P +FY E+V M
Sbjct: 542 SSVSDMTRARNLFYQGRTNIMLYTERAHHFRRFDFRGVKAVVMYGPPTNPQFYVELVRMP 601
Query: 711 ----LEG---SHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
EG S C +++++FD + LE IVG M + VF F
Sbjct: 602 MRTISEGNLDSDAAKCRIMYTKFDSICLEGIVGYQRVSNMCHGKHEVFEF 651
|
|
| UNIPROTKB|A4R0E6 UTP25 "U3 small nucleolar RNA-associated protein 25" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 193/474 (40%), Positives = 285/474 (60%)
Query: 293 NIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLP 352
N+ +H+LNHIF+TRD V KN K+AK SA + F D+GFTRPKVL+LLP
Sbjct: 274 NLRRLVCLHALNHIFKTRDRVIKNSAKLAKE--SADPDL----EFRDQGFTRPKVLMLLP 327
Query: 353 LKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTXXXXXXXXXXXASQNIRGTRKSNS 412
++ +++ + LT + N + RF D + T K
Sbjct: 328 TRNSCAKMIEMMCSLTETDQQENRK---RFDDSYVTR------------------EKQKF 366
Query: 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEEN 472
KP+D++ LF GN DD F +G+KFTRK+IK ++ FY SD+++ASP+ L M EE
Sbjct: 367 SNDKPTDFRDLFEGNADDMFRLGVKFTRKTIKFFSQFYNSDILLASPLGLRMAMGSTEE- 425
Query: 473 KEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGY 532
K D D+LSSIE++I+D AD ILMQNW + + E LNR P + HG D RIR WYLDG
Sbjct: 426 KNLDHDFLSSIEIVIMDQADAILMQNWEHVEHIFEHLNRQPKEAHGADFSRIRSWYLDGQ 485
Query: 533 SRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNAD 592
S+ YRQTV+LS NP+++ HC N+QGK+++ +Y+GV+ ++ + V+Q + RF+A
Sbjct: 486 SKNYRQTVILSSFNNPDLSEVMRVHCHNWQGKIRIQPDYQGVIQQLGVKVKQTFSRFDAQ 545
Query: 593 SIAKADDARLEYFTKKVFP----KIKDSIQGGIMLFLSSYFEFVRLRNFLKS----QNAS 644
+I DAR EYF K V P ++KDS G ++F+ SY +FVR+RN+ + Q+ S
Sbjct: 546 TIIADPDARFEYFIKAVVPSLTKRVKDSC--GTLVFIPSYMDFVRVRNWFATSPAAQSLS 603
Query: 645 FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704
F ++ ++TE S+ SRAR F G++K++LYTER H + R+++RG++ +I Y LP+ FY
Sbjct: 604 FGVISEHTEVSETSRARSHFVTGRQKVLLYTERCHHFWRHQLRGVRRVIFYGLPDNPVFY 663
Query: 705 PEIVNMLEGSHNMTCTV---------LFSRFDMLRLERIVGSAHAKKMVKSEKG 749
EI G T+ +FS++D+++LER+VG+ KM+ EKG
Sbjct: 664 KEIAGGCLGRSEQDMTLEPGEGSVRAMFSKYDVMKLERVVGTPRVGKMLH-EKG 716
|
|
| DICTYBASE|DDB_G0289235 DDB_G0289235 "Digestive organ expansion factor homolog" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.0e-91, Sum P(3) = 2.0e-91
Identities = 130/343 (37%), Positives = 212/343 (61%)
Query: 414 KSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENK 473
++KP DY+ +F N DD F G+ F + +KLY+ FY +D+I+ASP+ L + + E +
Sbjct: 501 ENKPDDYKYIFRDNIDDCFRFGLSFRKGGVKLYSTFYHADIIIASPLGL-RLVIGTEGDS 559
Query: 474 EQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYS 533
++D D+LSS+EVLIID D I QNW + + E LNRIP++ H D R+R L+G S
Sbjct: 560 QRDFDFLSSVEVLIIDQIDSIQQQNWDHINVLFENLNRIPTQDHNIDFSRLRNSSLEGLS 619
Query: 534 RFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADS 593
RQT+L S + PE+N+ FN HC N GK+++ G + ++ ++RQ + R DS
Sbjct: 620 SNLRQTLLFSSNLTPELNSIFNQHCKNISGKIRIKKIKNGEITNIVPSLRQTFHRLYLDS 679
Query: 594 IAKADDA--RLEYFTKKVFPK-IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGD 650
DD+ R + + PK ++ GI+L++S++FEF +RN+ + + S+ + +
Sbjct: 680 ---NDDSKIRFNFLIDNILPKFVQQGENSGILLYISNFFEFTMIRNYFRKEAKSYVICSE 736
Query: 651 YTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNM 710
YT+P ++RAR F E + ++L+TER HF++RY IRGI+++I + LP+ FY EI+NM
Sbjct: 737 YTDPKAVTRARSQFKESAKTIMLFTERFHFFNRYHIRGIKHVIFFGLPQNSHFYSEILNM 796
Query: 711 LEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
+ + + L++ D + LERIVG+ + KM++S+K +F
Sbjct: 797 ITENDGSIIS-LYTLKDKMALERIVGTQRSYKMLESDKPTHLF 838
|
|
| UNIPROTKB|A7YWC9 LOC510385 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 228/694 (32%), Positives = 370/694 (53%)
Query: 86 KIRQRQEEGRSDS--EEEGVGGPESLSESEQEDDISGEGTDSESRNCTT---EGTLQQ-- 138
K + +EE DS +E + + S+ +E+D++ E TD +S + EG
Sbjct: 84 KEEEEEEEAEEDSVMDETEMNLEDGDSDISEEEDMAAESTDMQSSVASPADPEGKDGHGP 143
Query: 139 PG-SIGIREQNEDADSVASDTDEEHGLGLNGQPXXXXXXXXXXXXXXXGYNLSKEEVDDL 197
PG S E+ DA + + E + L L ++E+ +
Sbjct: 144 PGTSEESPEEFTDAKHESLFSLETNFLEEESGGDSSPKASQDPFVQHVNTKLKEKEIQAV 203
Query: 198 S---KKKLKYEWEVPAVDMSNCKWVGTGECFL--KDDNLYSDYGLKPKLYKHWLDIYNKS 252
+ K + +W + + + K+ E F KD +L S + KP L W+ K+
Sbjct: 204 ATNPKTTHQLKWPILGQVVFSSKFQKL-ETFKPPKDIDLKSVHLQKP-LESTWI----KT 257
Query: 253 GGNDFHSSKQRS---FFSLCNSYRDILHSNKKPFYLK--GQEEDSNIMETYLMHSLNHIF 307
+ F S Q+S F L I++S + FY + + I Y +H +NH+
Sbjct: 258 N-SQFLSGPQKSNSPFTPLQKELFLIMNSYRDLFYPERTALKNGEEIRHVYCLHVINHVL 316
Query: 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367
+ V N+++ + S K G+ D F D+G TRPKVLI++P + AL VV+ I L
Sbjct: 317 KANAQVLGNNSR----RRSQKLGVGDDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISL 372
Query: 368 TP-DAHK-VNVEHIDRFCDEFGTXXXXXXXXXXXASQNIRGTRKSNSQKSKPSDYQILFG 425
D+ K + V + RF E+G+ R N ++ P DY+ +F
Sbjct: 373 LEGDSKKKIIVSNKKRFNGEYGSDPEE---------------RPPNLKR--PEDYEAVFV 415
Query: 426 GNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEV 485
GN DD+F IG+ ++SI+LY FY+SD+++ASP+ L + + E K++D D+LSSIE+
Sbjct: 416 GNIDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGL-RTIIGGEGEKKRDFDFLSSIEL 474
Query: 486 LIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545
LIID ADI LMQNW ++ ++ +N +P HG D R+R W L+ +S++YRQT+L
Sbjct: 475 LIIDQADIYLMQNWEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGAL 534
Query: 546 PNPEINAFFNHHCANYQGKVKL-ACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEY 604
+ +IN+ FN +C N QG+V + + G + +VL+ + +++R +S+A DAR +
Sbjct: 535 QDAQINSVFNKYCVNVQGQVAVRSVPMTGSISRVLVQLPHVFQRMQVESLASVIDARFNF 594
Query: 605 FTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWF 664
F K+ P+ +D++ ++++ SYF+FVRLRN+ K + +F + +YT+ S +SRAR +F
Sbjct: 595 FVNKILPQYRDAVMSHTLIYVPSYFDFVRLRNYFKKEELNFAHICEYTQKSGVSRARHFF 654
Query: 665 FEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHN-----MTC 719
+G+++ +L TER HFY RY I+GI+NLI Y LP FY E+ NML + TC
Sbjct: 655 LQGEKQFLLLTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEVCNMLRATSRGEEAAWTC 714
Query: 720 TVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
TVL+S++D RL +VG A +M++S+K V +F
Sbjct: 715 TVLYSKYDAQRLAAVVGVERAAQMLQSKKNVHLF 748
|
|
| RGD|1359148 Diexf "digestive organ expansion factor homolog (zebrafish)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 230/717 (32%), Positives = 365/717 (50%)
Query: 65 SVYDNLLMKLGSSSESVADAFKIRQRQEEGRSDSEEEGVGGPESLSESEQEDDISGEGTD 124
S Y LL L + SE + + + +EE + + ++ VG E E ED + E T
Sbjct: 70 SGYHRLLATLKNISEEEEEEEEEEEEEEEDKEEVDDSAVGDSEMNGEDGGED-VRVEET- 127
Query: 125 SESRNCTTEGTL--QQPGSIGIREQNEDADSVASDTDEEHGLGLNGQPXXXXXXXXXXXX 182
+ES +L G G S TD +H + +
Sbjct: 128 AESSETQDHMSLADNSKGKDGEEPPGVSQKSSEEFTDVKHESLFSLETNFLEEESGGSYS 187
Query: 183 XXXGYNLSKEEVD-DLSKKKLKYEWEVPAVDMSNCKWVGTG-----------ECFL--KD 228
+ + ++ +L +K+++ PA KW G E F KD
Sbjct: 188 QRTSQDPFQHHINKELQEKEIQAAASSPAATQQ-LKWPVLGHLVFSSKFQKMETFKPPKD 246
Query: 229 DNLYSDYGLKPKLYKHWLDIYNK--SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLK 286
+L S + KP L W ++ SG SS F L I++S + FY +
Sbjct: 247 IDLKSLHLQKP-LESTWAKTNSQFLSGPGPQKSSS--CFTPLQKELFLIMNSYRDLFYPE 303
Query: 287 --GQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTR 344
+ + Y +H++NH+ + V N+++ K+ G+ D F D+G TR
Sbjct: 304 RTALKNGEEVRHVYCLHAINHVLKANAQVLANNSRRRTQKL----GVGDDDDFRDQGLTR 359
Query: 345 PKVLILLPLKSIALNVVKRLIRLTP-DAHK-VNVEHIDRFCDEFGTXXXXXXXXXXXASQ 402
PKVLI++P + AL VV+ I L D+ K + V + RF E+G+
Sbjct: 360 PKVLIVVPFREAALRVVQLFISLLEGDSKKKIIVSNKKRFQGEYGSDPEE---------- 409
Query: 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL 462
R N ++ P DY+ +F GN DD+F IG+ ++SI+LY FY+SD+++ASP+ L
Sbjct: 410 -----RPPNLKR--PEDYEAVFVGNIDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGL 462
Query: 463 HQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVM 522
+ + E K++D D+LSSIE+LIID ADI LMQNW ++ ++ +N +P HG +
Sbjct: 463 -RTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEHVLHLMNHMNLLPLDSHGVNFS 521
Query: 523 RIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLA-CEYKGVLPKVLLN 581
R+R W L+ +S++YRQT+L + +IN+ FN HC N QG+V + G + VL+
Sbjct: 522 RVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKHCVNAQGQVAVRNVPMTGSISHVLVQ 581
Query: 582 VRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ 641
+ +++R A +A DAR +F K+ P+ +D++ ++++ SYF+FVRLRN+ K +
Sbjct: 582 LPHVFQRMEAQDLASVIDARFHFFINKILPQYRDAVMSHTLIYVPSYFDFVRLRNYFKKE 641
Query: 642 NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERK 701
+F + +YT+ S +SRAR +F +G+++ +L TER HFY RY I+GI+NLI Y LP
Sbjct: 642 ELNFTHICEYTQRSGVSRARHFFLQGEKQFLLLTERFHFYKRYTIKGIRNLIFYELPTYA 701
Query: 702 EFYPEIVNMLEGSHN-----MTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
FY E+ NML + TCTVL+S++D RL +VG A +M++S K V +F
Sbjct: 702 HFYSEVCNMLRATSRGEEATWTCTVLYSKYDAQRLAAVVGVERAAQMLQSPKSVHLF 758
|
|
| ASPGD|ASPL0000055343 AN1354 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 2.0e-87, Sum P(3) = 2.0e-87
Identities = 140/314 (44%), Positives = 204/314 (64%)
Query: 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEE 471
S + KP D++ LFGGN+DD F IG+KFTRK++K + FYTSD+I+ASP+ L M +A+
Sbjct: 339 SWEDKPQDFRELFGGNDDDMFRIGLKFTRKTLKFFTQFYTSDLILASPLGLRTIMDQADV 398
Query: 472 NKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531
K++D D+LSS+EV+I+DH D +LMQNW + +++ LN P + HG D R+R WYLD
Sbjct: 399 -KKRDHDFLSSVEVVIVDHTDALLMQNWDHVSYILKHLNLQPKEAHGCDFSRVRTWYLDN 457
Query: 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNV--RQIYERF 589
+R+ RQ +LLS PEIN+ F+ H N GKVKL Y G + ++ L V +Q + RF
Sbjct: 458 NARYVRQLILLSSFITPEINSVFSTHMHNVFGKVKLNPIYNGAIAELPLPVPVKQTFTRF 517
Query: 590 NADSIAKADDARLEYFTKKVFPKIKDSIQ--------GGIMLFLSSYFEFVRLRN-FLKS 640
+ S K DAR ++FT + + +I GG ++F+ SY +FVRLRN F S
Sbjct: 518 DCLSPTKDPDARFKHFTTTILSTLVRNITTSRNRASAGGTLIFIPSYLDFVRLRNYFATS 577
Query: 641 Q---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL 697
Q N SF + +YTEP +ISRAR +F G++ ++LYTER H + R++IRG++ +I+Y +
Sbjct: 578 QQTTNVSFGAISEYTEPREISRARSYFMTGRQSVLLYTERLHHFRRFRIRGVKRIIMYGM 637
Query: 698 PERKEFYPEIVNML 711
P+ F+ EIV L
Sbjct: 638 PDNPIFWGEIVGFL 651
|
|
| MGI|MGI:2138080 Diexf "digestive organ expansion factor homolog (zebrafish)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 170/450 (37%), Positives = 264/450 (58%)
Query: 313 VTKNDTKVAKN---KVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369
V K + +V N + S K G+ D F D+G TRPKVLI++P + AL VV+ I L
Sbjct: 334 VLKANAQVLANNSRRRSQKLGVGEDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLE 393
Query: 370 DAHKVNVEHIDRFCDEFGTXXXXXXXXXXXASQNIRGTRKSNSQKSKPSDYQILFGGNND 429
K + ++ F N++ +P DY+ +F GN D
Sbjct: 394 GDSKKKIIVSNK--KRF---QGEYGSDPEERPPNLK----------RPEDYEAVFVGNID 438
Query: 430 DNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIID 489
D+F IG+ ++SI+LY FY+SD+++ASP+ L + + E K++D D+LSS+E+LIID
Sbjct: 439 DHFRIGVAILQRSIRLYAPFYSSDILIASPLGL-RTIIGGEGEKKRDFDFLSSVELLIID 497
Query: 490 HADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549
ADI LMQNW ++ ++ +N +P HG D R+R W L+ +S++YRQT+L + +
Sbjct: 498 QADIYLMQNWEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQ 557
Query: 550 INAFFNHHCANYQGKVKLA-CEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKK 608
IN+ FN HC N QG+V + G + VL+ + +++R A ++ DAR +F K
Sbjct: 558 INSVFNKHCINAQGQVAVRNVPMTGSISHVLVQLPHVFQRMEAQDLSSVIDARFHFFINK 617
Query: 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK 668
+ P+ +D++ ++++ SYF+FVRLRN+ K + +F + +YT+ S ISRAR +F +G+
Sbjct: 618 ILPQYRDAVMSHTLIYVPSYFDFVRLRNYFKKEELNFTHICEYTQKSGISRARHFFLQGE 677
Query: 669 RKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHN-----MTCTVLF 723
++ +L TER HFY RY I+GI+NLI Y LP FY E+ NML + TCTVL+
Sbjct: 678 KQFLLLTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEVCNMLRATSRGEEATWTCTVLY 737
Query: 724 SRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
S++D RL +VG A +M++S K V +F
Sbjct: 738 SKYDAQRLAAVVGVERAAQMLQSPKNVHLF 767
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 754 | |||
| pfam06862 | 436 | pfam06862, DUF1253, Protein of unknown function (D | 0.0 | |
| COG5384 | 569 | COG5384, Mpp10, U3 small nucleolar ribonucleoprote | 0.001 |
| >gnl|CDD|219205 pfam06862, DUF1253, Protein of unknown function (DUF1253) | Back alignment and domain information |
|---|
Score = 551 bits (1423), Expect = 0.0
Identities = 226/455 (49%), Positives = 307/455 (67%), Gaps = 28/455 (6%)
Query: 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367
+TRD V KN++K+AKN ++KE I D F D+GFTRPKVLILLP ++IA VV LI+L
Sbjct: 1 KTRDRVLKNNSKLAKNAEASKENIDD-DEFRDQGFTRPKVLILLPTRNIAYEVVDTLIKL 59
Query: 368 TPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGN 427
P VE+ RF DEFG +EE N + SKP D+Q LF GN
Sbjct: 60 LP--ASDQVENKKRFNDEFGEDDDEEPP---------------NLKTSKPEDFQALFKGN 102
Query: 428 NDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLI 487
DD F +GIKFTRKSI+LY+ FY+SD+I+ASP+ L + + E+ K++D D+LSSIEVLI
Sbjct: 103 TDDFFRLGIKFTRKSIRLYSPFYSSDIIIASPLGLRMII-ENEDKKKRDYDFLSSIEVLI 161
Query: 488 IDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547
+D AD+ILMQNW ++ V + LN+IP K HG D R+R WYLDG +++YRQT+L S +
Sbjct: 162 VDQADVILMQNWEHVLTVFKHLNKIPKKSHGADFSRVRMWYLDGQAKYYRQTILFSSYIT 221
Query: 548 PEINAFFNHHCANYQGKVKLACEYK-GVLPKVLLNVRQIYERFNADSIAKADDARLEYFT 606
PEIN+ FN C NY+GKVKL YK GV+ +V L VRQ+++RF+A SI DAR ++FT
Sbjct: 222 PEINSLFNSKCVNYRGKVKLKPIYKSGVIGQVGLKVRQVFQRFDASSIVDDPDARFKFFT 281
Query: 607 KKVFPKIKDSI-QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFF 665
K V P+++ S G ++F+ SYF+FVRLRN+LK +N SF + +YT P ISRAR FF
Sbjct: 282 KNVLPQLRKSSYISGTLIFIPSYFDFVRLRNYLKKENVSFAAISEYTSPKKISRARTLFF 341
Query: 666 EGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGS-------HNMT 718
G+ ++LYTER HF+ RY+I+G++N+I Y PE +FY E+V ML S +
Sbjct: 342 SGRINVLLYTERLHFFRRYEIKGVKNVIFYGPPENPQFYSELVRMLGKSVFEGKDLAAAS 401
Query: 719 CTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753
L+S++D L LERIVG+ A K++KS+K V++F
Sbjct: 402 VRALYSKYDALALERIVGTERAAKLIKSKKEVYLF 436
|
This family represents the C-terminal portion (approximately 500 residues) of several hypothetical eukaryotic proteins of unknown function. Length = 436 |
| >gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 76 SSSESVADAFKIRQRQEEGRSDSEEEGVGGPESLSESEQEDDISGEGTDSESRNCTTEGT 135
S E FK +Q +D E +SLSE+++E + E T +E+
Sbjct: 95 SELEEAESVFKEKQMLS---ADVSEIEEQSNDSLSENDEEPSMDDEKTSAEAAREEFAEE 151
Query: 136 LQQPGSIGIREQNEDADSVASDT------------DEEHGLGLNGQPSSEASAHASSFHE 183
+ P GI ++ D + DT E+ + S+ + ++E
Sbjct: 152 KRIPDPYGINDKFFDLEKFNRDTLAAEDSNEASEGSEDEDIDYFQDMPSDDEEEEAIYYE 211
Query: 184 HFGYNLSKEEVDDLSKKK 201
F +KE V S K
Sbjct: 212 DFFDKPTKEPVKKHSDVK 229
|
Length = 569 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.98 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.98 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.98 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.98 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.97 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.97 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.96 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.96 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.96 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.96 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.95 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.95 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.94 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.94 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.94 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.93 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.92 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.91 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.87 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.87 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.85 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.84 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.8 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.78 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.78 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.76 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.75 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.73 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.71 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.69 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.68 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.66 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.66 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.63 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.6 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.59 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.59 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.58 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.57 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.5 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.47 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.45 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.45 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.45 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.38 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.38 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.36 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.29 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.27 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.2 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.12 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.11 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.1 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.09 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.02 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.02 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.01 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.87 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.87 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 98.83 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 98.77 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.66 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.66 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.65 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 98.45 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 98.43 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.25 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.2 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 98.13 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.06 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 98.01 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 97.8 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.77 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 97.76 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 97.75 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 97.63 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 97.61 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.58 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.58 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.16 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.97 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 96.97 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 96.93 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.53 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 96.45 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 96.43 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 96.43 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 96.0 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 95.88 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 95.88 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 95.71 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 94.9 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 94.82 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 94.8 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 94.71 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 93.55 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 93.51 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 93.47 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 93.28 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 93.04 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 92.5 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 91.04 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 89.45 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 89.38 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 88.46 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 87.51 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 86.35 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 85.32 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 84.98 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 83.75 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 83.69 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 83.67 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 83.32 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 82.39 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 81.75 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 81.25 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 81.04 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 81.01 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 80.84 |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-148 Score=1210.01 Aligned_cols=547 Identities=37% Similarity=0.677 Sum_probs=477.6
Q ss_pred CCCchhhhcCCCCCHHHHHHHhccc-ceeeeeecccCCCcceecCCC---cccC-----CCCCCcCCCCCCHHHHHHHHH
Q 004428 177 HASSFHEHFGYNLSKEEVDDLSKKK-LKYEWEVPAVDMSNCKWVGTG---ECFL-----KDDNLYSDYGLKPKLYKHWLD 247 (754)
Q Consensus 177 ~~d~F~~Hf~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~f~~l~L~~~L~~~~~~ 247 (754)
+.|||.+||+.+|.++-|+.+.++. .+.|...+++|.+....+... ..+| ....+...+.++++|.-..
T Consensus 130 ~~dpF~~hf~~el~s~~i~~~~a~~kt~~k~~~si~Gsl~~s~s~~~~~~k~~~~s~~~~s~~~i~s~~~kQ~l~~~~-- 207 (698)
T KOG2340|consen 130 SEDPFWSHFDDELGSKHIADLIARTKTTVKLEKSILGSLIFSGSRDLQLPKSPDCSNLGESYRSIGSLELKQRLLVES-- 207 (698)
T ss_pred ccChHHHHhhhhhhHHHHHHHHhcccccceeeecccccccccccccccccCCCCccchhhhhhhhHHHHHHHHHHHhh--
Confidence 3499999999999999999988762 233333377776432211100 0111 0011133344444432111
Q ss_pred HhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccc
Q 004428 248 IYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSA 327 (754)
Q Consensus 248 ~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~ 327 (754)
....+.....|++|.+++-+|++|+||+|...|- +|+..+|.+|||||||||+|+|++|++||+|++..+.+
T Consensus 208 -~~~~K~s~pltalQ~~L~~~m~~YrDl~y~~~s~------kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g- 279 (698)
T KOG2340|consen 208 -GVDQKKSEPLTALQKELFKIMFNYRDLLYPTRSQ------KNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEG- 279 (698)
T ss_pred -cccccccCcchHHHHHHHHHHHhhhhhccccccc------cccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcC-
Confidence 0001112224999999999999999999998874 46788999999999999999999999999998544332
Q ss_pred ccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHh-CCcc-cccccccccccccccCCCccccCcccchhhhccc
Q 004428 328 KEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL-TPDA-HKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIR 405 (754)
Q Consensus 328 ~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L-~~~~-~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~ 405 (754)
.-++++|||||||||||||||||||.|++||+.|+.+ .+.. +|..|.||+||..+|+++++..++
T Consensus 280 ---~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~---------- 346 (698)
T KOG2340|consen 280 ---ENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPP---------- 346 (698)
T ss_pred ---CCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCC----------
Confidence 3345789999999999999999999999999999998 4433 355689999999999998654433
Q ss_pred ccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeE
Q 004428 406 GTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEV 485 (754)
Q Consensus 406 n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEi 485 (754)
..+||+||+++|.||+||+||||++|+||+||||++||+|||||||||||||+|+ .+|+|++++|||||||+
T Consensus 347 -------~~~kP~D~~~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~-n~gdkkrd~dfLSSIEl 418 (698)
T KOG2340|consen 347 -------RAKKPEDFEELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILG-NTGDKKRDFDFLSSIEL 418 (698)
T ss_pred -------CCCCchhHHHHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhc-CCCcccccchhhhhhhh
Confidence 7789999999999999999999999999999999999999999999999999999 57889999999999999
Q ss_pred EEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceE
Q 004428 486 LIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKV 565 (754)
Q Consensus 486 LVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~V 565 (754)
+||||||.||||||+||.+||+|||++|+++|||||||||+||||||+++||||||||++..|.+|++|+.+|+|++|+|
T Consensus 419 ~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv 498 (698)
T KOG2340|consen 419 LIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKV 498 (698)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccc-CcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc
Q 004428 566 KLACEYK-GVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS 644 (754)
Q Consensus 566 kv~~~~~-g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~ 644 (754)
+..+... |+|+++..+|+|+|+|+.+.++.+.+|+||+||+.+|+|+|.+..++++|||||||||||||||||++++++
T Consensus 499 ~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~ 578 (698)
T KOG2340|consen 499 KARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEIS 578 (698)
T ss_pred eeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcc
Confidence 9987654 599999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC--------C
Q 004428 645 FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH--------N 716 (754)
Q Consensus 645 f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~--------~ 716 (754)
|+.||||+++++++|||..|++|+.+||||||||||||||+|+||++||||+||.+|+||+|+|+|++++. .
T Consensus 579 F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~ 658 (698)
T KOG2340|consen 579 FVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDI 658 (698)
T ss_pred hHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986431 3
Q ss_pred ceEEEEechhcHHHHHHHhCchHHHHhhhcCCCccccC
Q 004428 717 MTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVFC 754 (754)
Q Consensus 717 g~~~~L~sk~D~~~LErIVGt~ra~~m~~s~~~~~~F~ 754 (754)
++|++||||||.++||+|||++||++||+++++||+|.
T Consensus 659 ~t~~ilytKyD~i~Le~ivGterAA~l~~~kk~v~~f~ 696 (698)
T KOG2340|consen 659 FTVRILYTKYDRIRLENIVGTERAAALMSGKKEVYEFV 696 (698)
T ss_pred eEEEEEeechhhHHHHHhhhHHHHHHHhccchhhhhhh
Confidence 79999999999999999999999999999999999994
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-133 Score=1104.40 Aligned_cols=432 Identities=53% Similarity=0.933 Sum_probs=405.0
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
|||++|+|||+||++.+....+....++++|||||||||||||||||+.|++||+.|++|++.. ..++|++||.++||
T Consensus 1 KtR~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~--~~~~nk~RF~~efg 78 (442)
T PF06862_consen 1 KTRDRVLKNNEKLAKANARGEEKKDDEDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPG--KQVENKKRFEEEFG 78 (442)
T ss_pred CchhHHhhhHHHHHhhhhcccccccccchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHcC
Confidence 7899999999999987554433334568899999999999999999999999999999998874 34899999999999
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
.++++.+.+. +...+..||+||+++|+||+||+|||||+|+||++|||++||+|||||||||||+++|+
T Consensus 79 ~~~~~~~~~~-----------~~~~~~~kP~D~~~~F~GN~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~ 147 (442)
T PF06862_consen 79 LPEDEDDDEE-----------PPEFKKSKPEDFKALFSGNNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIG 147 (442)
T ss_pred CCccccchhh-----------hccccCCCchhHHHhcCCCccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhc
Confidence 7755443311 11126789999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
.+++|++++||||||||||||+||+|+||||+||.+||+|||++|+++|||||||||+||||||+++|||||+||++.+
T Consensus 148 -~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~ 226 (442)
T PF06862_consen 148 -EEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT 226 (442)
T ss_pred -cccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCC
Confidence 5667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeeccc--CcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh-hcCCCcEEEE
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYK--GVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK-DSIQGGIMLF 624 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~--g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~-~~~~~~tLIF 624 (754)
|++|+|++++|.|++|+|++.+.+. |++.++..+|+|+|+||+|+++.+++|+||+||+++|||.|. +...++||||
T Consensus 227 pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIf 306 (442)
T PF06862_consen 227 PEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIF 306 (442)
T ss_pred HHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEE
Confidence 9999999999999999999998887 999999999999999999999999999999999999999999 7889999999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
||||+||+||||||++++++|++||||+++++++|||++|++|+++|||||||+||||||.|+||+|||||+||++|+||
T Consensus 307 IPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY 386 (442)
T PF06862_consen 307 IPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFY 386 (442)
T ss_pred ecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCC-------CceEEEEechhcHHHHHHHhCchHHHHhhhcCCCcccc
Q 004428 705 PEIVNMLEGSH-------NMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753 (754)
Q Consensus 705 ~erigrt~ra~-------~g~~~~L~sk~D~~~LErIVGt~ra~~m~~s~~~~~~F 753 (754)
.|+|++++.+. .++|++|||+||+++||||||++||.+||+++++||+|
T Consensus 387 ~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~~ml~~~~~~~~F 442 (442)
T PF06862_consen 387 SELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERASKMLQSDKDTFEF 442 (442)
T ss_pred HHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHHHHhcCCCCeeeC
Confidence 99999987544 48999999999999999999999999999999999998
|
; GO: 0005634 nucleus |
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=567.38 Aligned_cols=361 Identities=19% Similarity=0.254 Sum_probs=300.7
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|.+++|+.+|++++..+ ||.. |||||.++||+.+-|+||++||-|| +|||+||+||+|..|+-.
T Consensus 181 ~sF~~mNLSRPlLka~~~l----Gy~~-PTpIQ~a~IPvallgkDIca~A~TG---------sGKTAAF~lPiLERLlYr 246 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTL----GYKK-PTPIQVATIPVALLGKDICACAATG---------SGKTAAFALPILERLLYR 246 (691)
T ss_pred hhHHhcccchHHHHHHHhc----CCCC-CCchhhhcccHHhhcchhhheeccc---------CCchhhhHHHHHHHHhcC
Confidence 5689999999999999886 9986 9999999999999999999999998 999999999999999854
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+. +-.-.+|||||||||||.||.....+|+.... + . +|
T Consensus 247 Pk-----------------------------~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I------~----~~-- 284 (691)
T KOG0338|consen 247 PK-----------------------------KVAATRVLVLVPTRELAIQVHSVTKQLAQFTD-I------T----VG-- 284 (691)
T ss_pred cc-----------------------------cCcceeEEEEeccHHHHHHHHHHHHHHHhhcc-c------e----ee--
Confidence 32 22346899999999999999999999986543 1 0 11
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
...|| +.++-+...|+ ..+||+|||||||+++|.+.
T Consensus 285 --------------------------------L~vGG-------L~lk~QE~~LR-----s~PDIVIATPGRlIDHlrNs 320 (691)
T KOG0338|consen 285 --------------------------------LAVGG-------LDLKAQEAVLR-----SRPDIVIATPGRLIDHLRNS 320 (691)
T ss_pred --------------------------------eeecC-------ccHHHHHHHHh-----hCCCEEEecchhHHHHhccC
Confidence 11222 12333344444 47999999999999999853
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
..+ .|+|||||||||||||| .+|-+.+..|+ +++|+. ||||||||||+.
T Consensus 321 -----~sf-~ldsiEVLvlDEADRMLeegFademnEii---~lcpk~---------------------RQTmLFSATMte 370 (691)
T KOG0338|consen 321 -----PSF-NLDSIEVLVLDEADRMLEEGFADEMNEII---RLCPKN---------------------RQTMLFSATMTE 370 (691)
T ss_pred -----CCc-cccceeEEEechHHHHHHHHHHHHHHHHH---Hhcccc---------------------ccceeehhhhHH
Confidence 234 49999999999999999 45556666665 556875 999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh-hcCCCcEEEEecc
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK-DSIQGGIMLFLSS 627 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~-~~~~~~tLIFv~S 627 (754)
+|..|++-.+++ +.+|.+.+.. .+++.++|.|.|+-..-- .. | ..+|+.|. +.-..+|||||.+
T Consensus 371 eVkdL~slSL~k-Pvrifvd~~~-----~~a~~LtQEFiRIR~~re-~d---R-----ea~l~~l~~rtf~~~~ivFv~t 435 (691)
T KOG0338|consen 371 EVKDLASLSLNK-PVRIFVDPNK-----DTAPKLTQEFIRIRPKRE-GD---R-----EAMLASLITRTFQDRTIVFVRT 435 (691)
T ss_pred HHHHHHHhhcCC-CeEEEeCCcc-----ccchhhhHHHheeccccc-cc---c-----HHHHHHHHHHhcccceEEEEeh
Confidence 999999876666 5577665542 578899999999975321 11 2 13455443 3457899999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.|++-.|--.|++++.|||.++|.+|..++..|+++++.||||||+|+ ||+||.||+.||||.+|...+.|+||
T Consensus 436 Kk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAs--RGLDI~gV~tVINy~mP~t~e~Y~HR 513 (691)
T KOG0338|consen 436 KKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVAS--RGLDIEGVQTVINYAMPKTIEHYLHR 513 (691)
T ss_pred HHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhh--ccCCccceeEEEeccCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHHhCc
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErIVGt 737 (754)
||||+|+| .|.+++|+...|...|-.|+..
T Consensus 514 VGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 514 VGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999998 7999999999999888777765
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-64 Score=534.54 Aligned_cols=359 Identities=19% Similarity=0.280 Sum_probs=303.7
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|++||+.|.|+++++++ |+.. ||+||+++||.++.|+||++.|+|| +|||.||+||||+||+.
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l----~~~~-PT~IQ~~aiP~~L~g~dvIglAeTG---------SGKT~afaLPIl~~LL~ 125 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQEL----GWKK-PTKIQSEAIPVALGGRDVIGLAETG---------SGKTGAFALPILQRLLQ 125 (476)
T ss_pred hcchhhcCcCHHHHHHHHHh----CcCC-CchhhhhhcchhhCCCcEEEEeccC---------CCchhhhHHHHHHHHHc
Confidence 57899999999999999997 7765 9999999999999999999999999 89999999999999996
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+ ..|.+|||+||||||.||.+.+..|+.... .|..
T Consensus 126 ~p--------------------------------~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig-------lr~~----- 161 (476)
T KOG0330|consen 126 EP--------------------------------KLFFALVLTPTRELAQQIAEQFEALGSGIG-------LRVA----- 161 (476)
T ss_pred CC--------------------------------CCceEEEecCcHHHHHHHHHHHHHhccccC-------eEEE-----
Confidence 52 248999999999999999999999976543 1222
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.+.|| +.+..+++.|. ..++|||||||||.+++++
T Consensus 162 ---------------------------------~lvGG---------~~m~~q~~~L~---kkPhilVaTPGrL~dhl~~ 196 (476)
T KOG0330|consen 162 ---------------------------------VLVGG---------MDMMLQANQLS---KKPHILVATPGRLWDHLEN 196 (476)
T ss_pred ---------------------------------EEecC---------chHHHHHHHhh---cCCCEEEeCcHHHHHHHHh
Confidence 23333 44555666665 5799999999999999985
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ +.+ .|..+.+|||||||++| |.|-+.+..|++. +|.+ |||+|||||||
T Consensus 197 T-----kgf-~le~lk~LVlDEADrlLd~dF~~~ld~ILk~---ip~e---------------------rqt~LfsATMt 246 (476)
T KOG0330|consen 197 T-----KGF-SLEQLKFLVLDEADRLLDMDFEEELDYILKV---IPRE---------------------RQTFLFSATMT 246 (476)
T ss_pred c-----cCc-cHHHhHHHhhchHHhhhhhhhHHHHHHHHHh---cCcc---------------------ceEEEEEeecc
Confidence 3 345 49999999999999999 5555567777665 4654 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..|....+.|+ .+|.+...| +++..++|.|.+++...+ ++.+-|.++ ......+||||++
T Consensus 247 ~kv~kL~rasl~~p-~~v~~s~ky-----~tv~~lkQ~ylfv~~k~K----~~yLV~ll~-------e~~g~s~iVF~~t 309 (476)
T KOG0330|consen 247 KKVRKLQRASLDNP-VKVAVSSKY-----QTVDHLKQTYLFVPGKDK----DTYLVYLLN-------ELAGNSVIVFCNT 309 (476)
T ss_pred hhhHHHHhhccCCC-eEEeccchh-----cchHHhhhheEecccccc----chhHHHHHH-------hhcCCcEEEEEec
Confidence 99999997777775 466555444 578889999999986532 433333222 2234789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+....++.-.|+..|+++..+||.|+|++|--+++.|++|.+.||||||+|+ ||+||++|++|||||+|.+...|+||
T Consensus 310 ~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaS--RGLDip~Vd~VVNyDiP~~skDYIHR 387 (476)
T KOG0330|consen 310 CNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVAS--RGLDIPHVDVVVNYDIPTHSKDYIHR 387 (476)
T ss_pred cchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhc--ccCCCCCceEEEecCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcH---HHHHHHhCchH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDM---LRLERIVGSAH 739 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~---~~LErIVGt~r 739 (754)
||||+|+| .|++++|+|.||. +++|..+|+++
T Consensus 388 vGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 388 VGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 99999998 7999999999996 56677777765
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-63 Score=559.88 Aligned_cols=361 Identities=20% Similarity=0.308 Sum_probs=298.2
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|++|+|++.|+++|.++ ||.. |||||+++||.++.|+||++.|+|| +|||+||+||+|++|...
T Consensus 29 ~~F~~l~l~~~ll~~l~~~----gf~~-pt~IQ~~~IP~~l~g~Dvi~~A~TG---------sGKT~Af~lP~l~~l~~~ 94 (513)
T COG0513 29 PEFASLGLSPELLQALKDL----GFEE-PTPIQLAAIPLILAGRDVLGQAQTG---------TGKTAAFLLPLLQKILKS 94 (513)
T ss_pred CCHhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHhcc
Confidence 6799999999999999985 8876 9999999999999999999999998 999999999999997632
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.. . -..| +|||+||||||.||.+.+..++.... ..|....|||.
T Consensus 95 ~~----------------------------~-~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~------~~~~~~i~GG~ 138 (513)
T COG0513 95 VE----------------------------R-KYVS-ALILAPTRELAVQIAEELRKLGKNLG------GLRVAVVYGGV 138 (513)
T ss_pred cc----------------------------c-CCCc-eEEECCCHHHHHHHHHHHHHHHhhcC------CccEEEEECCC
Confidence 00 0 0123 99999999999999999999976541 12344555543
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.+..+. .... .++||||||||||.++|..
T Consensus 139 -----------------------------------------------~~~~q~-~~l~--~~~~ivVaTPGRllD~i~~- 167 (513)
T COG0513 139 -----------------------------------------------SIRKQI-EALK--RGVDIVVATPGRLLDLIKR- 167 (513)
T ss_pred -----------------------------------------------CHHHHH-HHHh--cCCCEEEECccHHHHHHHc-
Confidence 333333 2233 2699999999999999983
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
....|+.|++|||||||+|| |++++.+..|+..+ |.+ |||++||||++.
T Consensus 168 ------~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~---p~~---------------------~qtllfSAT~~~ 217 (513)
T COG0513 168 ------GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL---PPD---------------------RQTLLFSATMPD 217 (513)
T ss_pred ------CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC---Ccc---------------------cEEEEEecCCCH
Confidence 35569999999999999999 87778888777665 543 999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecc
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSS 627 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~S 627 (754)
.|..|++++++|+. .|.+.... .......|.|.|+.++.. +.|+. +|-.+.. ....++||||++
T Consensus 218 ~i~~l~~~~l~~p~-~i~v~~~~---~~~~~~~i~q~~~~v~~~------~~k~~-----~L~~ll~~~~~~~~IVF~~t 282 (513)
T COG0513 218 DIRELARRYLNDPV-EIEVSVEK---LERTLKKIKQFYLEVESE------EEKLE-----LLLKLLKDEDEGRVIVFVRT 282 (513)
T ss_pred HHHHHHHHHccCCc-EEEEcccc---ccccccCceEEEEEeCCH------HHHHH-----HHHHHHhcCCCCeEEEEeCc
Confidence 99999999999864 66665331 123577899999998742 13553 4444433 345579999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.+|...|.+.|++++.|||.++|.+|.+++..|++|+.+||||||+|+ ||+||++|.||||||+|.+++.|+||
T Consensus 283 k~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaa--RGiDi~~v~~VinyD~p~~~e~yvHR 360 (513)
T COG0513 283 KRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAA--RGLDIPDVSHVINYDLPLDPEDYVHR 360 (513)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhh--ccCCccccceeEEccCCCCHHHheec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechh-cHHHH---HHHhCch
Q 004428 708 VNMLEGSH-NMTCTVLFSRF-DMLRL---ERIVGSA 738 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~-D~~~L---ErIVGt~ 738 (754)
||||||+| .|.+++|++.. |...| |+.++..
T Consensus 361 iGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 361 IGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999998 79999999965 76555 5555443
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-63 Score=550.13 Aligned_cols=361 Identities=20% Similarity=0.255 Sum_probs=296.8
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcC
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTR 310 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr 310 (754)
.|+.++|++.+..+++.. |+.. |||||.+.||+++.|+|+++.|+|| +|||.||+||++.|+....
T Consensus 92 ~f~~~~ls~~~~~~lk~~----g~~~-PtpIQaq~wp~~l~GrD~v~iA~TG---------SGKTLay~lP~i~~l~~~~ 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQ----GFEK-PTPIQAQGWPIALSGRDLVGIARTG---------SGKTLAYLLPAIVHLNNEQ 157 (519)
T ss_pred hhhcccccHHHHHHHHhc----CCCC-CchhhhcccceeccCCceEEEeccC---------CcchhhhhhHHHHHHHhcc
Confidence 799999999999988875 8875 9999999999999999999999999 8999999999999998630
Q ss_pred CccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCc
Q 004428 311 DLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKK 390 (754)
Q Consensus 311 ~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~ 390 (754)
. ++ ..| ..|+||||+||||||.||...+.+++.... .|-.+.|||.+
T Consensus 158 ~-------~~------------------~~~-~~P~vLVL~PTRELA~QV~~~~~~~~~~~~-------~~~~cvyGG~~ 204 (519)
T KOG0331|consen 158 G-------KL------------------SRG-DGPIVLVLAPTRELAVQVQAEAREFGKSLR-------LRSTCVYGGAP 204 (519)
T ss_pred c-------cc------------------cCC-CCCeEEEEcCcHHHHHHHHHHHHHHcCCCC-------ccEEEEeCCCC
Confidence 0 00 011 369999999999999999999999986542 45677888763
Q ss_pred cccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhh
Q 004428 391 EEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470 (754)
Q Consensus 391 ~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e 470 (754)
.. -+...++ +++||+|||||||+++|+.
T Consensus 205 ~~---------------------------------------------~Q~~~l~-----~gvdiviaTPGRl~d~le~-- 232 (519)
T KOG0331|consen 205 KG---------------------------------------------PQLRDLE-----RGVDVVIATPGRLIDLLEE-- 232 (519)
T ss_pred cc---------------------------------------------HHHHHHh-----cCCcEEEeCChHHHHHHHc--
Confidence 21 0223343 7899999999999999983
Q ss_pred cccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 471 ENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 471 ~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
....|+.+.+|||||||+|| |++=+.|..|+..+ |.. -|||||||||+|.+
T Consensus 233 -----g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i---~~~--------------------~rQtlm~saTwp~~ 284 (519)
T KOG0331|consen 233 -----GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQI---PRP--------------------DRQTLMFSATWPKE 284 (519)
T ss_pred -----CCccccceeEEEeccHHhhhccccHHHHHHHHHhc---CCC--------------------cccEEEEeeeccHH
Confidence 45569999999999999999 77666777777654 332 27999999999999
Q ss_pred HHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchh
Q 004428 550 INAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYF 629 (754)
Q Consensus 550 insL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~ 629 (754)
+..|+..++.||. +|.+.... .......|.|+...++.. ....|+. .+|..+.....++|||||.++.
T Consensus 285 v~~lA~~fl~~~~-~i~ig~~~---~~~a~~~i~qive~~~~~----~K~~~l~----~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 285 VRQLAEDFLNNPI-QINVGNKK---ELKANHNIRQIVEVCDET----AKLRKLG----KLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred HHHHHHHHhcCce-EEEecchh---hhhhhcchhhhhhhcCHH----HHHHHHH----HHHHHHhccCCCcEEEEecchh
Confidence 9999999999863 44443211 123456788988877632 2222322 3443343335689999999999
Q ss_pred cHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhcc
Q 004428 630 EFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709 (754)
Q Consensus 630 d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erig 709 (754)
.+.+|...|+..++++.+|||+.+|++|..+++.|++|+.+||||||||+ ||+||++|++|||||+|.+++.|+||||
T Consensus 353 ~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa--RGLDi~dV~lVInydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 353 TCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA--RGLDVPDVDLVINYDFPNNVEDYVHRIG 430 (519)
T ss_pred hHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccc--ccCCCccccEEEeCCCCCCHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCC-CceEEEEechhcHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSRFDMLRLE 732 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk~D~~~LE 732 (754)
||||++ .|+|.+||+..+....-
T Consensus 431 RTGRa~~~G~A~tfft~~~~~~a~ 454 (519)
T KOG0331|consen 431 RTGRAGKKGTAITFFTSDNAKLAR 454 (519)
T ss_pred ccccCCCCceEEEEEeHHHHHHHH
Confidence 999987 79999999988765443
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=508.56 Aligned_cols=383 Identities=19% Similarity=0.222 Sum_probs=321.5
Q ss_pred CCCcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHH
Q 004428 220 GTGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYL 299 (754)
Q Consensus 220 ~~~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~ 299 (754)
..|..+|.++.+..+.++...+++.++.. ||.. |||||+++||++++++|+|+.|.|| +|||+||+
T Consensus 235 ~kg~~lpnplrnwEE~~~P~e~l~~I~~~----~y~e-ptpIqR~aipl~lQ~rD~igvaETg---------sGktaaf~ 300 (673)
T KOG0333|consen 235 IKGGRLPNPLRNWEESGFPLELLSVIKKP----GYKE-PTPIQRQAIPLGLQNRDPIGVAETG---------SGKTAAFL 300 (673)
T ss_pred ecCCCCCccccChhhcCCCHHHHHHHHhc----CCCC-CchHHHhhccchhccCCeeeEEecc---------CCccccch
Confidence 34667899999999999999999988774 8875 9999999999999999999999998 89999999
Q ss_pred HHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccc
Q 004428 300 MHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHI 379 (754)
Q Consensus 300 Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk 379 (754)
+|+|-.|...+.. +. .+-.++| |+++||+||||||.||-++-.+++....
T Consensus 301 ipLl~~IsslP~~--------~~------------~en~~~g---pyaiilaptReLaqqIeeEt~kf~~~lg------- 350 (673)
T KOG0333|consen 301 IPLLIWISSLPPM--------AR------------LENNIEG---PYAIILAPTRELAQQIEEETNKFGKPLG------- 350 (673)
T ss_pred hhHHHHHHcCCCc--------ch------------hhhcccC---ceeeeechHHHHHHHHHHHHHHhccccc-------
Confidence 9999999877532 10 0112454 9999999999999999999999976542
Q ss_pred cccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCc
Q 004428 380 DRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASP 459 (754)
Q Consensus 380 ~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASP 459 (754)
-|.....| |.+|.-++++|- .+|+|+||||
T Consensus 351 ~r~vsvig-----------------------------------------------g~s~EEq~fqls---~gceiviatP 380 (673)
T KOG0333|consen 351 IRTVSVIG-----------------------------------------------GLSFEEQGFQLS---MGCEIVIATP 380 (673)
T ss_pred ceEEEEec-----------------------------------------------ccchhhhhhhhh---ccceeeecCc
Confidence 13333333 355666655543 5899999999
Q ss_pred hhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCC--CC----CchhhhhhhhcccC
Q 004428 460 INLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQ--HG----TDVMRIRQWYLDGY 532 (754)
Q Consensus 460 lgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~--h~----~DfsRvR~w~L~~~ 532 (754)
|||.+.+++ .+.-|+.+.++||||||+|+ |++=+.|..|+++| |... .| -+.-|++.-|-.
T Consensus 381 grLid~Len-------r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~m---Pssn~k~~tde~~~~~~~~~~~~~-- 448 (673)
T KOG0333|consen 381 GRLIDSLEN-------RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQM---PSSNAKPDTDEKEGEERVRKNFSS-- 448 (673)
T ss_pred hHHHHHHHH-------HHHHhccCceEeccchhhhhcccccHHHHHHHHhC---CccccCCCccchhhHHHHHhhccc--
Confidence 999999984 45669999999999999999 77778898888876 5432 12 246677766655
Q ss_pred CCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHH
Q 004428 533 SRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPK 612 (754)
Q Consensus 533 ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~ 612 (754)
+|+||||+||+||++|.+..|++.|++++ ..|.+ |.+.+..+.|+|.++.+..+ .+++ +|++.
T Consensus 449 ~k~yrqT~mftatm~p~verlar~ylr~p-v~vti-----g~~gk~~~rveQ~v~m~~ed-------~k~k----kL~ei 511 (673)
T KOG0333|consen 449 SKKYRQTVMFTATMPPAVERLARSYLRRP-VVVTI-----GSAGKPTPRVEQKVEMVSED-------EKRK----KLIEI 511 (673)
T ss_pred ccceeEEEEEecCCChHHHHHHHHHhhCC-eEEEe-----ccCCCCccchheEEEEecch-------HHHH----HHHHH
Confidence 45899999999999999999999999996 34433 56667888999999988643 2332 46665
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeE
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~V 692 (754)
|......++||||+++..++-|+..|.+.++.++.+||..+|.+|..|++.|+.|...||||||+|+ ||+||++|+||
T Consensus 512 l~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg--RGIDIpnVSlV 589 (673)
T KOG0333|consen 512 LESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG--RGIDIPNVSLV 589 (673)
T ss_pred HHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc--cCCCCCcccee
Confidence 6555678999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEccCCCCCCchhhhccccCCCC-CceEEEEechhc
Q 004428 693 IIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 693 IfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D 727 (754)
||||++.+.+.|.|||||||||| .|+|++|+|+.|
T Consensus 590 inydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 590 INYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred eecchhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 99999999999999999999999 699999999887
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=504.94 Aligned_cols=389 Identities=18% Similarity=0.177 Sum_probs=311.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|..+.+|++-.+.+.|..+++. +++.. |||+|+.+||++..|+|+++||+|| +|||+||++|
T Consensus 66 G~~~p~~i~~f~~~~l~~~l~~ni~~----~~~~~-ptpvQk~sip~i~~Grdl~acAqTG---------sGKT~aFLiP 131 (482)
T KOG0335|consen 66 GRDVPPHIPTFDEAILGEALAGNIKR----SGYTK-PTPVQKYSIPIISGGRDLMACAQTG---------SGKTAAFLIP 131 (482)
T ss_pred CCccCCCcccccccchhHHHhhcccc----ccccC-CCcceeeccceeecCCceEEEccCC---------CcchHHHHHH
Confidence 45667777789988888888877655 48875 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
++.++++.+.. +-....|-.-|.+|||+||||||-||.++..+++..+. .+
T Consensus 132 ii~~~~~~~~~----------------------~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~-------~~ 182 (482)
T KOG0335|consen 132 IISYLLDEGPE----------------------DRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSG-------MK 182 (482)
T ss_pred HHHHHHhcCcc----------------------cCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccc-------ce
Confidence 99999976431 00011111369999999999999999999999987653 24
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
-...||+.+. |-. ...+ ..++||+||||||
T Consensus 183 ~~~~ygg~~~-------------------------------------------~~q--~~~~-----~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 183 SVVVYGGTDL-------------------------------------------GAQ--LRFI-----KRGCDILVATPGR 212 (482)
T ss_pred eeeeeCCcch-------------------------------------------hhh--hhhh-----ccCccEEEecCch
Confidence 4456665421 110 0111 2689999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh--hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL--MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL--mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
|.++|+ +...-|+.+.+|||||||+|| |.+...+.+|+..+..+|+. .|||
T Consensus 213 L~d~~e-------~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~--------------------~~qt 265 (482)
T KOG0335|consen 213 LKDLIE-------RGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKN--------------------NRQT 265 (482)
T ss_pred hhhhhh-------cceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCcc--------------------ceeE
Confidence 999998 345569999999999999998 78889999999999988875 4999
Q ss_pred EEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc---
Q 004428 540 VLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS--- 616 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~--- 616 (754)
+|||||++.+++.++..++.+. .+.+... .+......|.|.+..|....+ | .++|..|...
T Consensus 266 ~mFSAtfp~~iq~l~~~fl~~~--yi~laV~---rvg~~~~ni~q~i~~V~~~~k------r-----~~Lldll~~~~~~ 329 (482)
T KOG0335|consen 266 LLFSATFPKEIQRLAADFLKDN--YIFLAVG---RVGSTSENITQKILFVNEMEK------R-----SKLLDLLNKDDGP 329 (482)
T ss_pred EEEeccCChhhhhhHHHHhhcc--ceEEEEe---eeccccccceeEeeeecchhh------H-----HHHHHHhhcccCC
Confidence 9999999999999999998862 2444433 333567789999999875432 2 2344444321
Q ss_pred ------CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCC
Q 004428 617 ------IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQ 690 (754)
Q Consensus 617 ------~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~ 690 (754)
....|||||.+...+..|..+|...++++..||++.+|.+|.+|++.|++|++++||||.+++ |||||++|+
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Vaa--RGlDi~~V~ 407 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAA--RGLDIPNVK 407 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhh--cCCCCCCCc
Confidence 123799999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhhcCCCcccc
Q 004428 691 NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVKSEKGVFVF 753 (754)
Q Consensus 691 ~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~s~~~~~~F 753 (754)
||||||||.+.+.|+||||||||.+ .|.+++||...+..-.+.+ +.-|..+++.|-.|
T Consensus 408 hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L-----~~~l~ea~q~vP~w 466 (482)
T KOG0335|consen 408 HVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL-----VEILTEANQEVPQW 466 (482)
T ss_pred eeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH-----HHHHHHhcccCcHH
Confidence 9999999999999999999999999 5899999995554333322 23455566665544
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=480.52 Aligned_cols=367 Identities=19% Similarity=0.220 Sum_probs=300.1
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
...|+.|||++-|.+.+..+ |... |||||+.+||.|+.|+|+++||+|| +|||+||+||+||.+-+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l----~i~~-pTpiQ~~cIpkILeGrdcig~AkTG---------sGKT~AFaLPil~rLse 71 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKAL----GIKK-PTPIQQACIPKILEGRDCIGCAKTG---------SGKTAAFALPILNRLSE 71 (442)
T ss_pred cCchhhcCccHHHHHHHHHh----cCCC-CCchHhhhhHHHhcccccccccccC---------CCcchhhhHHHHHhhcc
Confidence 56799999999999999887 7766 9999999999999999999999998 89999999999999976
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+. .--+|||+||||||+||.+.|+.+..... .|..-.+||
T Consensus 72 dP~--------------------------------giFalvlTPTrELA~QiaEQF~alGk~l~-------lK~~vivGG 112 (442)
T KOG0340|consen 72 DPY--------------------------------GIFALVLTPTRELALQIAEQFIALGKLLN-------LKVSVIVGG 112 (442)
T ss_pred CCC--------------------------------cceEEEecchHHHHHHHHHHHHHhccccc-------ceEEEEEcc
Confidence 532 13479999999999999999999875432 133334444
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ..-.+++.|- ..+||||||||||.+++..
T Consensus 113 ~-----------------------------------------------d~i~qa~~L~---~rPHvVvatPGRlad~l~s 142 (442)
T KOG0340|consen 113 T-----------------------------------------------DMIMQAAILS---DRPHVVVATPGRLADHLSS 142 (442)
T ss_pred H-----------------------------------------------HHhhhhhhcc---cCCCeEecCcccccccccc
Confidence 3 3344566664 4699999999999999974
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
..+ -..--+..|++|||||||+||.+-+ +++..|++.+ |+. |||+|||||++
T Consensus 143 n~~---~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l---P~~---------------------RQtLlfSATit 195 (442)
T KOG0340|consen 143 NLG---VCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL---PKP---------------------RQTLLFSATIT 195 (442)
T ss_pred CCc---cchhhhhceeeEEecchhhhhccchhhHHhhhhccC---CCc---------------------cceEEEEeehh
Confidence 211 1233478999999999999996544 6777777664 764 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..++.++.-...+. .......+.|+ .+...+.|-|..++.. ..|+ |.+ .+|..+.....+.++|||++
T Consensus 196 d~i~ql~~~~i~k~--~a~~~e~~~~v--stvetL~q~yI~~~~~----vkda---YLv-~~Lr~~~~~~~~simIFvnt 263 (442)
T KOG0340|consen 196 DTIKQLFGCPITKS--IAFELEVIDGV--STVETLYQGYILVSID----VKDA---YLV-HLLRDFENKENGSIMIFVNT 263 (442)
T ss_pred hHHHHhhcCCcccc--cceEEeccCCC--Cchhhhhhheeecchh----hhHH---HHH-HHHhhhhhccCceEEEEeeh
Confidence 99999986554431 12222222332 4677899999987642 2333 333 46666655567899999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..|+-.|+..++..+++|+.+.|++|..|++.|+++.++||||||||+ ||+||+.|..||||++|.+|..|+||
T Consensus 264 tr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs--RGLDIP~V~LVvN~diPr~P~~yiHR 341 (442)
T KOG0340|consen 264 TRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS--RGLDIPTVELVVNHDIPRDPKDYIHR 341 (442)
T ss_pred hHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh--cCCCCCceeEEEecCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHH---HHHHHhCchH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAH 739 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~r 739 (754)
+|||+|+| .|.++++++.+|.. ++|..||++.
T Consensus 342 vGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 342 VGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred hcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 99999999 69999999999965 5588888864
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-56 Score=473.05 Aligned_cols=387 Identities=19% Similarity=0.215 Sum_probs=306.2
Q ss_pred CCCHHHHHHHhcccceeeeeecccCCCcceecCCCcccCCCCCCcCC-CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHh
Q 004428 188 NLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSD-YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFF 266 (754)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~i 266 (754)
++++++++.+-.......|..+. .+....+|.+..+|.+ ++-.+.+++.+.+. ||.. |||||.+++
T Consensus 185 ~ls~~q~~~~r~en~~it~dd~K--------~gekrpIPnP~ctFddAFq~~pevmenIkK~----GFqK-PtPIqSQaW 251 (629)
T KOG0336|consen 185 NLSKEQLQEWRKENFNITCDDLK--------EGEKRPIPNPVCTFDDAFQCYPEVMENIKKT----GFQK-PTPIQSQAW 251 (629)
T ss_pred cCCHHHHHHHHHcCCcEEecccc--------cCCcccCCCCcCcHHHHHhhhHHHHHHHHhc----cCCC-CCcchhccc
Confidence 47778887776655444442111 1222358888888876 45668888888775 8876 999999999
Q ss_pred hhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCce
Q 004428 267 SLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPK 346 (754)
Q Consensus 267 p~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPk 346 (754)
|++++|+|+++.|||| +|||.+|+||.+-|+..+.. .|+| +..|.
T Consensus 252 PI~LQG~DliGVAQTg---------tgKtL~~L~pg~ihi~aqp~-------------------------~~~q-r~~p~ 296 (629)
T KOG0336|consen 252 PILLQGIDLIGVAQTG---------TGKTLAFLLPGFIHIDAQPK-------------------------RREQ-RNGPG 296 (629)
T ss_pred ceeecCcceEEEEecC---------CCcCHHHhccceeeeeccch-------------------------hhhc-cCCCc
Confidence 9999999999999998 89999999999999986632 2444 57899
Q ss_pred EEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccC
Q 004428 347 VLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGG 426 (754)
Q Consensus 347 VLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~G 426 (754)
+|+|+||||||+||--+.++.+... .+-.+.||+..- +
T Consensus 297 ~lvl~ptreLalqie~e~~kysyng--------~ksvc~ygggnR-------------------------~--------- 334 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSYNG--------LKSVCVYGGGNR-------------------------N--------- 334 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhhcC--------cceEEEecCCCc-------------------------h---------
Confidence 9999999999999998888875432 344566765411 1
Q ss_pred CCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHH
Q 004428 427 NNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEV 505 (754)
Q Consensus 427 N~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~I 505 (754)
-+-..++ .+.+|||||||||.++.-. .+..|+||-+|||||||+|| |++=..+..|
T Consensus 335 -----------eqie~lk-----rgveiiiatPgrlndL~~~-------n~i~l~siTYlVlDEADrMLDMgFEpqIrki 391 (629)
T KOG0336|consen 335 -----------EQIEDLK-----RGVEIIIATPGRLNDLQMD-------NVINLASITYLVLDEADRMLDMGFEPQIRKI 391 (629)
T ss_pred -----------hHHHHHh-----cCceEEeeCCchHhhhhhc-------CeeeeeeeEEEEecchhhhhcccccHHHHHH
Confidence 0122344 6899999999999998762 57789999999999999999 6655566666
Q ss_pred HHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccccc-ccceeE
Q 004428 506 VEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKV-LLNVRQ 584 (754)
Q Consensus 506 l~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v-~~~I~Q 584 (754)
|=-+ -| -|||+|-|||.|+-++.|+..|++++- .+ +.|.+.-+ ...|+|
T Consensus 392 lldi--RP----------------------DRqtvmTSATWP~~VrrLa~sY~Kep~---~v---~vGsLdL~a~~sVkQ 441 (629)
T KOG0336|consen 392 LLDI--RP----------------------DRQTVMTSATWPEGVRRLAQSYLKEPM---IV---YVGSLDLVAVKSVKQ 441 (629)
T ss_pred hhhc--CC----------------------cceeeeecccCchHHHHHHHHhhhCce---EE---Eecccceeeeeeeee
Confidence 5222 23 399999999999999999999999962 22 23544332 346899
Q ss_pred EEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHH
Q 004428 585 IYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARV 662 (754)
Q Consensus 585 ~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~ 662 (754)
.+ .+... ..+++ ++..+.. +...++||||.++.-++.|..-|.-.||+.-+|||..+|++|.+|+.
T Consensus 442 ~i-~v~~d------~~k~~-----~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~ 509 (629)
T KOG0336|consen 442 NI-IVTTD------SEKLE-----IVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALE 509 (629)
T ss_pred eE-Eeccc------HHHHH-----HHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHH
Confidence 88 44422 11221 2222222 34579999999999999999999999999999999999999999999
Q ss_pred HHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHH
Q 004428 663 WFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 663 ~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
.|++|+++||||||+|. ||+||.+|.||+|||.|.+.+-|+||||||||+| .|++++++++.|+...
T Consensus 510 ~~ksG~vrILvaTDlaS--RGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a 577 (629)
T KOG0336|consen 510 DFKSGEVRILVATDLAS--RGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMA 577 (629)
T ss_pred hhhcCceEEEEEechhh--cCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHH
Confidence 99999999999999999 9999999999999999999999999999999998 7999999999997544
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=464.24 Aligned_cols=362 Identities=16% Similarity=0.222 Sum_probs=310.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|+++.+|..+|+.+.|..++.+. .|.+ |||||.+++|..++++||+..|+|| +|+|+||+.|
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~----Ey~k-ptpiq~qalptalsgrdvigIAktg---------SgktaAfi~p 280 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKS----EYEK-PTPIQCQALPTALSGRDVIGIAKTG---------SGKTAAFIWP 280 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhh----hccc-CCcccccccccccccccchheeecc---------CcchhHHHHH
Confidence 568999999999999999999988764 6776 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
++-||+..... .++ ..|-.||||||||||.||.....+|+..-. .|
T Consensus 281 m~~himdq~eL------------------------~~g---~gPi~vilvPTrela~Qi~~eaKkf~K~yg-------l~ 326 (731)
T KOG0339|consen 281 MIVHIMDQPEL------------------------KPG---EGPIGVILVPTRELASQIFSEAKKFGKAYG-------LR 326 (731)
T ss_pred HHHHhcchhhh------------------------cCC---CCCeEEEEeccHHHHHHHHHHHHHhhhhcc-------ce
Confidence 99999865321 112 259999999999999999999999975422 36
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....|||.+.-+ +-+.|+ -++.||||||||
T Consensus 327 ~v~~ygGgsk~e---------------------------------------------Q~k~Lk-----~g~EivVaTPgR 356 (731)
T KOG0339|consen 327 VVAVYGGGSKWE---------------------------------------------QSKELK-----EGAEIVVATPGR 356 (731)
T ss_pred EEEeecCCcHHH---------------------------------------------HHHhhh-----cCCeEEEechHH
Confidence 667787763210 223444 589999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|++++.. ..-.|+.+-+|||||||+|+ |++-..|..|..|+. |. ||||
T Consensus 357 lid~Vkm-------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir--pd----------------------rQtl 405 (731)
T KOG0339|consen 357 LIDMVKM-------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR--PD----------------------RQTL 405 (731)
T ss_pred HHHHHHh-------hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC--Cc----------------------ceEE
Confidence 9999863 23459999999999999999 777778999988862 43 9999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
|||||+...|..|++.++..+ |++.. |.+......|.|+...+.. .+.++++|+.+|...+ ..+.
T Consensus 406 lFsaTf~~kIe~lard~L~dp---VrvVq---g~vgean~dITQ~V~V~~s------~~~Kl~wl~~~L~~f~---S~gk 470 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILSDP---VRVVQ---GEVGEANEDITQTVSVCPS------EEKKLNWLLRHLVEFS---SEGK 470 (731)
T ss_pred EeeccchHHHHHHHHHHhcCC---eeEEE---eehhccccchhheeeeccC------cHHHHHHHHHHhhhhc---cCCc
Confidence 999999999999999998875 55432 3455667789999888764 3678998888754332 4689
Q ss_pred EEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
+||||..+.++..|.+.|+-.++++..+|+++.|.+|...++.|+.++++|||+||+|+ ||+||+.+++|||||+-.+
T Consensus 471 vlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa--rgldI~~ikTVvnyD~ard 548 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA--RGLDIPSIKTVVNYDFARD 548 (731)
T ss_pred EEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh--cCCCccccceeecccccch
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhhccccCCCC-CceEEEEechhcHH
Q 004428 701 KEFYPEIVNMLEGSH-NMTCTVLFSRFDML 729 (754)
Q Consensus 701 pefY~erigrt~ra~-~g~~~~L~sk~D~~ 729 (754)
.+.|.||||||||++ .|.+.+|+|..|+.
T Consensus 549 IdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 549 IDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred hHHHHHHhhhcccccccceeeEEechhhHH
Confidence 999999999999998 79999999999975
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=474.15 Aligned_cols=376 Identities=16% Similarity=0.228 Sum_probs=286.9
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC-ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY-RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y-~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
.-...|+|+..++.+|..+ ||.. |||||...+|.+..| .|||+.|.|| +|||.||.+|+|..++.
T Consensus 181 sAW~~l~lp~~iL~aL~~~----gFs~-Pt~IQsl~lp~ai~gk~DIlGaAeTG---------SGKTLAFGIPiv~~l~~ 246 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNL----GFSR-PTEIQSLVLPAAIRGKVDILGAAETG---------SGKTLAFGIPIVERLLE 246 (731)
T ss_pred HHHhcCCCCHHHHHHHHhc----CCCC-CccchhhcccHhhccchhcccccccC---------CCceeeecchhhhhhhh
Confidence 3456778999999999986 8986 999999999999999 8999999998 89999999999997776
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
+-+- ... ..+ -++.+.+|-+|||+||||||.||.++|..+++.++ + |....
T Consensus 247 ~s~~-----s~e-------------~~~-~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~-i------~v~si--- 297 (731)
T KOG0347|consen 247 SSDD-----SQE-------------LSN-TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ-I------RVASI--- 297 (731)
T ss_pred ccch-----Hhh-------------hhh-HHhccCcceeEEecChHHHHHHHHHHHHHhccccC-e------EEEEe---
Confidence 5321 000 011 12334455699999999999999999999988765 1 33333
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
+| |++.+ |+-+|.. +.+||+|||||||+.+|.+
T Consensus 298 -----------------------------------~G---------GLavq-KQqRlL~--~~p~IVVATPGRlweli~e 330 (731)
T KOG0347|consen 298 -----------------------------------TG---------GLAVQ-KQQRLLN--QRPDIVVATPGRLWELIEE 330 (731)
T ss_pred -----------------------------------ec---------hhHHH-HHHHHHh--cCCCEEEecchHHHHHHHh
Confidence 33 35555 4666776 4899999999999999974
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ ..-.-.++.|..|||||||||+ .+.|+.+..|+++||--++ +.-|||++||||++
T Consensus 331 ~----n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~-------------------~~qrQTlVFSATlt 387 (731)
T KOG0347|consen 331 D----NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK-------------------NRQRQTLVFSATLT 387 (731)
T ss_pred h----hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc-------------------ccccceEEEEEEee
Confidence 2 2233457899999999999999 7889999999999984443 34599999999998
Q ss_pred HHHHHHHHHhhcCC-------------------CceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHH
Q 004428 548 PEINAFFNHHCANY-------------------QGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKK 608 (754)
Q Consensus 548 peinsL~~~~~~N~-------------------~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~ 608 (754)
-....=.+...++. .|+=++...... ..++..|... ++.|+ ..+.|-.+.||+.
T Consensus 388 ~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q--~~ta~~l~Es--~I~C~--~~eKD~ylyYfl~- 460 (731)
T KOG0347|consen 388 LVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQ--SATASTLTES--LIECP--PLEKDLYLYYFLT- 460 (731)
T ss_pred hhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcc--hhHHHHHHHH--hhcCC--ccccceeEEEEEe-
Confidence 54332221111111 111111110000 0111112111 23442 2244555666654
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG 688 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg 688 (754)
.++++|||||+|.....||.-+|+..+++...||..|.|++|.+++..|++...-||||||||| ||+||+|
T Consensus 461 -------ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAA--RGLDIp~ 531 (731)
T KOG0347|consen 461 -------RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAA--RGLDIPG 531 (731)
T ss_pred -------ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhh--ccCCCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 689 IQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 689 V~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|.|||+|++|...+.|+||.|||+||. .|..+.|+.+.+...|-++
T Consensus 532 V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 532 VQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred cceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHH
Confidence 999999999999999999999999997 6888888889887666544
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-52 Score=474.42 Aligned_cols=370 Identities=16% Similarity=0.165 Sum_probs=291.6
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|+++.+|.+++|++.|+++|.++ |+.. |||+|.++||++++++||+++++|| +|||.+|+||
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~----g~~~-pt~iQ~~aip~~l~G~dvI~~ApTG---------SGKTlaylLP 187 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNA----GFTE-PTPIQVQGWPIALSGRDMIGIAETG---------SGKTLAFLLP 187 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCEEEEeCCC---------ChHHHHHHHH
Confidence 456788899999999999999999875 8876 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|.|++..+.. .. -..|.||||+||||||.||.+.+.+++.... .+
T Consensus 188 ~l~~i~~~~~~--------------------------~~-~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~-------i~ 233 (545)
T PTZ00110 188 AIVHINAQPLL--------------------------RY-GDGPIVLVLAPTRELAEQIREQCNKFGASSK-------IR 233 (545)
T ss_pred HHHHHHhcccc--------------------------cC-CCCcEEEEECChHHHHHHHHHHHHHHhcccC-------cc
Confidence 99999754210 00 1258999999999999999999999875432 12
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....||+.+ ...+...|. .++|||||||++
T Consensus 234 ~~~~~gg~~-----------------------------------------------~~~q~~~l~---~~~~IlVaTPgr 263 (545)
T PTZ00110 234 NTVAYGGVP-----------------------------------------------KRGQIYALR---RGVEILIACPGR 263 (545)
T ss_pred EEEEeCCCC-----------------------------------------------HHHHHHHHH---cCCCEEEECHHH
Confidence 333455431 111112222 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....|+.|.+|||||||+|+. ++-..+..|+.. ++. .||+|
T Consensus 264 L~d~l~~-------~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~---~~~---------------------~~q~l 312 (545)
T PTZ00110 264 LIDFLES-------NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ---IRP---------------------DRQTL 312 (545)
T ss_pred HHHHHHc-------CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh---CCC---------------------CCeEE
Confidence 9999972 455799999999999999994 333445555544 333 38999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
+||||++.++..+++.+|...+..+.+... . ......|+|.+..++.. .+...+ ..+|..+.. ...+
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~--~--l~~~~~i~q~~~~~~~~-------~k~~~L-~~ll~~~~~-~~~k 379 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSL--D--LTACHNIKQEVFVVEEH-------EKRGKL-KMLLQRIMR-DGDK 379 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCC--c--cccCCCeeEEEEEEech-------hHHHHH-HHHHHHhcc-cCCe
Confidence 999999999999999988754433333211 0 12345788888776532 122211 223333322 4579
Q ss_pred EEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
+||||++...+..|...|+..++++..+|+.++|.+|..+++.|++|+++||||||++. ||+||++|++||||++|.+
T Consensus 380 ~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~--rGIDi~~v~~VI~~d~P~s 457 (545)
T PTZ00110 380 ILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVAS--RGLDVKDVKYVINFDFPNQ 457 (545)
T ss_pred EEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhh--cCCCcccCCEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 701 KEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 701 pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
++.|+||+||+||++ .|.|++||++.|...+..++
T Consensus 458 ~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~ 493 (545)
T PTZ00110 458 IEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLV 493 (545)
T ss_pred HHHHHHHhcccccCCCCceEEEEECcchHHHHHHHH
Confidence 999999999999997 69999999998875554443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=455.09 Aligned_cols=366 Identities=16% Similarity=0.220 Sum_probs=285.1
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|++++|++.|+++|.+. ||.. |||+|+++||.+++|+||+++|+|| +|||.+|++|+|+++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~----g~~~-pt~iQ~~aip~il~g~dvi~~ApTG---------sGKTla~llp~l~~l~~ 72 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKK----GFHN-CTPIQALALPLTLAGRDVAGQAQTG---------TGKTMAFLTATFHYLLS 72 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCcEEEECCCC---------chHHHHHHHHHHHHHHh
Confidence 36799999999999999875 8876 9999999999999999999999998 99999999999999986
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+.. . ...-..|++|||+||||||.|+.+.+..++.... + +....+|+
T Consensus 73 ~~~~-----------------------~--~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~-~------~v~~~~gg 120 (423)
T PRK04837 73 HPAP-----------------------E--DRKVNQPRALIMAPTRELAVQIHADAEPLAQATG-L------KLGLAYGG 120 (423)
T ss_pred cccc-----------------------c--ccccCCceEEEECCcHHHHHHHHHHHHHHhccCC-c------eEEEEECC
Confidence 5321 0 0112358999999999999999999998865432 1 12222332
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. .......++ .++|||||||++|.+++..
T Consensus 121 ~~---------------------------------------------~~~~~~~l~-----~~~~IlV~TP~~l~~~l~~ 150 (423)
T PRK04837 121 DG---------------------------------------------YDKQLKVLE-----SGVDILIGTTGRLIDYAKQ 150 (423)
T ss_pred CC---------------------------------------------HHHHHHHhc-----CCCCEEEECHHHHHHHHHc
Confidence 21 111222222 4689999999999999862
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+.|.+|||||||.|+ +++...+..|+.. +|.. .-||+++||||++
T Consensus 151 -------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~---~~~~-------------------~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 -------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRR---MPPA-------------------NQRLNMLFSATLS 201 (423)
T ss_pred -------CCcccccccEEEEecHHHHhhcccHHHHHHHHHh---CCCc-------------------cceeEEEEeccCC
Confidence 34458999999999999998 4444555555544 4531 1289999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..+...++.++ ..|.+.+.. .....|+|.+.... .+.+..++. .+ +......++||||++
T Consensus 202 ~~~~~~~~~~~~~p-~~i~v~~~~-----~~~~~i~~~~~~~~-------~~~k~~~l~-~l---l~~~~~~~~lVF~~t 264 (423)
T PRK04837 202 YRVRELAFEHMNNP-EYVEVEPEQ-----KTGHRIKEELFYPS-------NEEKMRLLQ-TL---IEEEWPDRAIIFANT 264 (423)
T ss_pred HHHHHHHHHHCCCC-EEEEEcCCC-----cCCCceeEEEEeCC-------HHHHHHHHH-HH---HHhcCCCeEEEEECC
Confidence 99999998888774 455554331 22345777655432 123443222 22 223346789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+.+|.++|...++++..+|+.+++++|.++++.|++|+++|||+||+++ ||+||++|++||||++|.+++.|.||
T Consensus 265 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~--rGiDip~v~~VI~~d~P~s~~~yiqR 342 (423)
T PRK04837 265 KHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAA--RGLHIPAVTHVFNYDLPDDCEDYVHR 342 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhh--cCCCccccCEEEEeCCCCchhheEec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHH---HHHhCch
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRL---ERIVGSA 738 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~L---ErIVGt~ 738 (754)
+||+||+| .|.|++|++..|...+ |+.++.+
T Consensus 343 ~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 343 IGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999998 7999999998876555 4444443
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=461.26 Aligned_cols=362 Identities=17% Similarity=0.235 Sum_probs=288.2
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
++|++|+|++.|+++|.++ |+.. |||+|+++||.+++++|++++++|| +|||.+|+||+|+++...
T Consensus 1 ~~f~~l~l~~~l~~~l~~~----g~~~-pt~iQ~~ai~~il~g~dvlv~apTG---------sGKTla~~lpil~~l~~~ 66 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQ----GYRE-PTPIQQQAIPAVLEGRDLMASAQTG---------TGKTAGFTLPLLQHLITR 66 (456)
T ss_pred CCHHHcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHHHHHHHHHhhhc
Confidence 3689999999999999885 8876 9999999999999999999999998 899999999999999754
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.. ...+...++||||+|||+||.|+.+.+..++.... .+...
T Consensus 67 ~~--------------------------~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~-------~~~~~----- 108 (456)
T PRK10590 67 QP--------------------------HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN-------IRSLV----- 108 (456)
T ss_pred cc--------------------------ccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC-------CEEEE-----
Confidence 21 01233457999999999999999999998864321 11112
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+++| +.+.++..++. .++|||||||++|.+++..
T Consensus 109 ---------------------------------~~gg---------~~~~~~~~~l~---~~~~IiV~TP~rL~~~~~~- 142 (456)
T PRK10590 109 ---------------------------------VFGG---------VSINPQMMKLR---GGVDVLVATPGRLLDLEHQ- 142 (456)
T ss_pred ---------------------------------EECC---------cCHHHHHHHHc---CCCcEEEEChHHHHHHHHc-
Confidence 2332 33444444443 3689999999999998762
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
....|+.|.+|||||||+|++.+ +..+..|+ +.+|.. ||+++||||+++
T Consensus 143 ------~~~~l~~v~~lViDEah~ll~~~~~~~i~~il---~~l~~~---------------------~q~l~~SAT~~~ 192 (456)
T PRK10590 143 ------NAVKLDQVEILVLDEADRMLDMGFIHDIRRVL---AKLPAK---------------------RQNLLFSATFSD 192 (456)
T ss_pred ------CCcccccceEEEeecHHHHhccccHHHHHHHH---HhCCcc---------------------CeEEEEeCCCcH
Confidence 33459999999999999999543 34455554 445653 899999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecc
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSS 627 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~S 627 (754)
++..++..++.|+ ..+.+.... .....|.|.+..++.. .+. .+|..+.. ....++||||++
T Consensus 193 ~~~~l~~~~~~~~-~~i~~~~~~-----~~~~~i~~~~~~~~~~-------~k~-----~~l~~l~~~~~~~~~lVF~~t 254 (456)
T PRK10590 193 DIKALAEKLLHNP-LEIEVARRN-----TASEQVTQHVHFVDKK-------RKR-----ELLSQMIGKGNWQQVLVFTRT 254 (456)
T ss_pred HHHHHHHHHcCCC-eEEEEeccc-----ccccceeEEEEEcCHH-------HHH-----HHHHHHHHcCCCCcEEEEcCc
Confidence 9999999888875 345443221 2345678877765421 111 23333333 345789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+.++..|...|++.++.+..+|+.+++.+|.++++.|++|+++||||||+++ ||+||++|++||||++|.+++.|+||
T Consensus 255 ~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~--rGiDip~v~~VI~~~~P~~~~~yvqR 332 (456)
T PRK10590 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA--RGLDIEELPHVVNYELPNVPEDYVHR 332 (456)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHh--cCCCcccCCEEEEeCCCCCHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHH---HHHHHhCchH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAH 739 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~r 739 (754)
+||+||++ .|.|++|++..|.. .+|++++.+.
T Consensus 333 ~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred ccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 99999987 79999999988854 4577766554
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=457.34 Aligned_cols=356 Identities=19% Similarity=0.221 Sum_probs=286.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+.+|++++|++.|+++|.++ |+.. |||+|+++||.+++++|++++++|| +|||.+|+||+|+++..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~----g~~~-~t~iQ~~ai~~~l~g~dvi~~a~TG---------sGKT~a~~lpil~~l~~ 68 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNEL----GYTE-MTPIQAQSLPAILAGKDVIAQAKTG---------SGKTAAFGLGLLQKLDV 68 (460)
T ss_pred CCChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCEEEECCCC---------CcHHHHHHHHHHHHhhh
Confidence 35799999999999999885 8876 8999999999999999999999998 89999999999999842
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...+++|||+||||||.|+.+.+..++..... .+....+|+
T Consensus 69 ~--------------------------------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~------~~v~~~~Gg 110 (460)
T PRK11776 69 K--------------------------------RFRVQALVLCPTRELADQVAKEIRRLARFIPN------IKVLTLCGG 110 (460)
T ss_pred c--------------------------------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC------cEEEEEECC
Confidence 2 12478999999999999999999988643210 122223332
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. .+.. ++..+. .++|||||||++|.+++.+
T Consensus 111 ~-----------------------------------------------~~~~-~~~~l~--~~~~IvV~Tp~rl~~~l~~ 140 (460)
T PRK11776 111 V-----------------------------------------------PMGP-QIDSLE--HGAHIIVGTPGRILDHLRK 140 (460)
T ss_pred C-----------------------------------------------ChHH-HHHHhc--CCCCEEEEChHHHHHHHHc
Confidence 2 2221 122222 5799999999999999972
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+++.+|||||||+|+ |+++..+..|+..+ |.. ||+|+||||++
T Consensus 141 -------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~---~~~---------------------~q~ll~SAT~~ 189 (460)
T PRK11776 141 -------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQA---PAR---------------------RQTLLFSATYP 189 (460)
T ss_pred -------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC---Ccc---------------------cEEEEEEecCc
Confidence 34458999999999999999 66667777776654 543 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..+...++.++ -.+.+... .....|.|.|+.++.. .|+.... .+ +......++||||++
T Consensus 190 ~~~~~l~~~~~~~~-~~i~~~~~------~~~~~i~~~~~~~~~~-------~k~~~l~-~l---l~~~~~~~~lVF~~t 251 (460)
T PRK11776 190 EGIAAISQRFQRDP-VEVKVEST------HDLPAIEQRFYEVSPD-------ERLPALQ-RL---LLHHQPESCVVFCNT 251 (460)
T ss_pred HHHHHHHHHhcCCC-EEEEECcC------CCCCCeeEEEEEeCcH-------HHHHHHH-HH---HHhcCCCceEEEECC
Confidence 99999999988875 34444322 1234588988876532 2443221 22 223345789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..|...|++.++.+..+|+.++|.+|.+++..|++|+.+||||||+++ ||+||++|++||+|++|.+++.|+||
T Consensus 252 ~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~--rGiDi~~v~~VI~~d~p~~~~~yiqR 329 (460)
T PRK11776 252 KKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAA--RGLDIKALEAVINYELARDPEVHVHR 329 (460)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccc--cccchhcCCeEEEecCCCCHhHhhhh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHH---HHHhCc
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRL---ERIVGS 737 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~L---ErIVGt 737 (754)
+||+||++ .|.|++|+++.|...+ ++.+|.
T Consensus 330 ~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 330 IGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred cccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999998 6999999999987664 555554
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=450.03 Aligned_cols=357 Identities=17% Similarity=0.248 Sum_probs=290.0
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|..+.|++..++++.++ ||.. .|++|+.++|+++.|+|+++.|+|| +|||.||+||++.+|+|.
T Consensus 82 ~~f~~~~LS~~t~kAi~~~----GF~~-MT~VQ~~ti~pll~gkDvl~~AKTG---------tGKTlAFLiPaie~l~k~ 147 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEM----GFET-MTPVQQKTIPPLLEGKDVLAAAKTG---------TGKTLAFLLPAIELLRKL 147 (543)
T ss_pred hHhhccccCHHHHHHHHhc----Cccc-hhHHHHhhcCccCCCccceeeeccC---------CCceeeehhHHHHHHHhc
Confidence 4477888999999999996 8987 7999999999999999999999998 999999999999999988
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+-. .| ....||||+||||||.|+...+.+|......
T Consensus 148 ~~~------------------------~r----~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~---------------- 183 (543)
T KOG0342|consen 148 KFK------------------------PR----NGTGVLIICPTRELAMQIFAEAKELLKYHES---------------- 183 (543)
T ss_pred ccC------------------------CC----CCeeEEEecccHHHHHHHHHHHHHHHhhCCC----------------
Confidence 531 11 2468999999999999999999998643210
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.-+..+.|||+ +..-+-+|-+ ++.|+|||||||.|+|+++
T Consensus 184 ----------------------------~~v~~viGG~~---------~~~e~~kl~k---~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 184 ----------------------------ITVGIVIGGNN---------FSVEADKLVK---GCNILIATPGRLLDHLQNT 223 (543)
T ss_pred ----------------------------cceEEEeCCcc---------chHHHHHhhc---cccEEEeCCchHHhHhhcC
Confidence 01234455542 3333444443 7999999999999999963
Q ss_pred hcccccCcccC-CceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYL-SSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfL-SSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
.+ |+ ..+.+|||||||++| |+|-+.|..|+++| |+. |||+|||||++
T Consensus 224 -----~~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l---pk~---------------------rqt~LFSAT~~ 272 (543)
T KOG0342|consen 224 -----SG--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKIL---PKQ---------------------RQTLLFSATQP 272 (543)
T ss_pred -----Cc--chhhccceeEeecchhhhhcccHHHHHHHHHhc---ccc---------------------ceeeEeeCCCc
Confidence 22 33 355899999999999 55557888888776 664 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCC-CcEEEEec
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQ-GGIMLFLS 626 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~-~~tLIFv~ 626 (754)
+++..|++-.+.--+ +.+.+.-.|. .....+|+|.|...+. +.||-. ++..|++... .++||||+
T Consensus 273 ~kV~~l~~~~L~~d~--~~v~~~d~~~-~~The~l~Qgyvv~~~-------~~~f~l----l~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 273 SKVKDLARGALKRDP--VFVNVDDGGE-RETHERLEQGYVVAPS-------DSRFSL----LYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred HHHHHHHHHhhcCCc--eEeecCCCCC-cchhhcccceEEeccc-------cchHHH----HHHHHHHhcCCceEEEEec
Confidence 999999988776533 4443332222 2467889999998654 456531 2222333333 89999999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
|..-..-+...|+...+++..||+-.+|.+|++.-..|++-+.-|||||||+| ||+||++|+.||-|++|++|+.|+|
T Consensus 339 T~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA--RGlD~P~V~~VvQ~~~P~d~~~YIH 416 (543)
T KOG0342|consen 339 TCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA--RGLDIPDVDWVVQYDPPSDPEQYIH 416 (543)
T ss_pred hhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh--ccCCCCCceEEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHH
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
|||||||.| .|.+.-|.++|+..=|
T Consensus 417 RvGRTaR~gk~G~alL~l~p~El~Fl 442 (543)
T KOG0342|consen 417 RVGRTAREGKEGKALLLLAPWELGFL 442 (543)
T ss_pred HhccccccCCCceEEEEeChhHHHHH
Confidence 999999987 6899999999986544
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=469.80 Aligned_cols=354 Identities=15% Similarity=0.221 Sum_probs=286.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
.++|.+++|++.|+++|.++ ||.. |||+|+++||.+++++||++.++|| +|||.||+||+|+++..
T Consensus 5 ~~~f~~l~L~~~ll~al~~~----G~~~-ptpiQ~~ai~~ll~g~dvl~~ApTG---------sGKT~af~lpll~~l~~ 70 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDL----GYEK-PSPIQAECIPHLLNGRDVLGMAQTG---------SGKTAAFSLPLLHNLDP 70 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------CcHHHHHHHHHHHHhhh
Confidence 45699999999999999885 8876 9999999999999999999999998 99999999999998742
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...|+||||+|||+||.|+.+.+.++...... .+....||+
T Consensus 71 ~--------------------------------~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~------i~v~~~~gG 112 (629)
T PRK11634 71 E--------------------------------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRG------VNVVALYGG 112 (629)
T ss_pred c--------------------------------cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC------ceEEEEECC
Confidence 2 12589999999999999999999988643211 122233333
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. .+.. +++.+. .+++|||+||++|.++|.
T Consensus 113 ~-----------------------------------------------~~~~-q~~~l~--~~~~IVVgTPgrl~d~l~- 141 (629)
T PRK11634 113 Q-----------------------------------------------RYDV-QLRALR--QGPQIVVGTPGRLLDHLK- 141 (629)
T ss_pred c-----------------------------------------------CHHH-HHHHhc--CCCCEEEECHHHHHHHHH-
Confidence 2 1221 122222 478999999999999997
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+....|+.|.+|||||||.|+ |++++.+..|+..+ |.. +||++||||++
T Consensus 142 ------r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l---p~~---------------------~q~llfSAT~p 191 (629)
T PRK11634 142 ------RGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI---PEG---------------------HQTALFSATMP 191 (629)
T ss_pred ------cCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhC---CCC---------------------CeEEEEEccCC
Confidence 244569999999999999998 77777777777654 653 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..+..+++.++ ..|.+... ......|.|.|..+... .+.. .+...|.......+||||++
T Consensus 192 ~~i~~i~~~~l~~~-~~i~i~~~-----~~~~~~i~q~~~~v~~~-------~k~~----~L~~~L~~~~~~~~IVF~~t 254 (629)
T PRK11634 192 EAIRRITRRFMKEP-QEVRIQSS-----VTTRPDISQSYWTVWGM-------RKNE----ALVRFLEAEDFDAAIIFVRT 254 (629)
T ss_pred hhHHHHHHHHcCCC-eEEEccCc-----cccCCceEEEEEEechh-------hHHH----HHHHHHHhcCCCCEEEEecc
Confidence 99999999999885 35554322 12345688888876532 1222 12222233445789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.+|.++|.+.++.+..+|+.++|.+|.+++..|++|+++|||+||+++ ||+||++|.+||||++|.+++.|+||
T Consensus 255 k~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~a--rGIDip~V~~VI~~d~P~~~e~yvqR 332 (629)
T PRK11634 255 KNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA--RGLDVERISLVVNYDIPMDSESYVHR 332 (629)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHh--cCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
+||+||++ .|.|+++++..|...|..|
T Consensus 333 iGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 333 IGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred hccccCCCCcceEEEEechHHHHHHHHH
Confidence 99999998 5999999998876555443
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=449.62 Aligned_cols=366 Identities=16% Similarity=0.180 Sum_probs=290.3
Q ss_pred CCcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHH
Q 004428 221 TGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLM 300 (754)
Q Consensus 221 ~~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~L 300 (754)
+|..+|.++.+|.++.+...|+..+++ +|... |||||-+-+|.+++|||+++.|-|| +|||..|+|
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~----KGI~~-PTpIQvQGlPvvLsGRDmIGIAfTG---------SGKTlvFvL 226 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKK----KGIVH-PTPIQVQGLPVVLSGRDMIGIAFTG---------SGKTLVFVL 226 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHh----cCCCC-CCceeecCcceEeecCceeeEEeec---------CCceEEEeH
Confidence 467899999999999999999998877 47775 9999999999999999999999998 899999999
Q ss_pred HHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccc
Q 004428 301 HSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHID 380 (754)
Q Consensus 301 h~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~ 380 (754)
|++--.+..-- +| +--|. ..|-.||+||.||||.|+.+.+..+....+... ....
T Consensus 227 P~imf~LeqE~-------~l--------------Pf~~~---EGP~gLiicPSRELArQt~~iie~~~~~L~e~g-~P~l 281 (610)
T KOG0341|consen 227 PVIMFALEQEM-------ML--------------PFARG---EGPYGLIICPSRELARQTHDIIEQYVAALQEAG-YPEL 281 (610)
T ss_pred HHHHHHHHHHh-------cC--------------ccccC---CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcC-Chhh
Confidence 99887764310 00 11122 249999999999999999999988765432100 0111
Q ss_pred ccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCch
Q 004428 381 RFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPI 460 (754)
Q Consensus 381 Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPl 460 (754)
|..-+. | |+.+. .++..-. .+.+|+|||||
T Consensus 282 Rs~Lci---------------------------------------G--------G~~v~-eql~~v~--~GvHivVATPG 311 (610)
T KOG0341|consen 282 RSLLCI---------------------------------------G--------GVPVR-EQLDVVR--RGVHIVVATPG 311 (610)
T ss_pred hhhhhh---------------------------------------c--------CccHH-HHHHHHh--cCeeEEEcCcc
Confidence 222222 2 34433 3444444 69999999999
Q ss_pred hHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 461 NLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 461 gLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
||.+++.. ....|.-+.+|+|||||||+ |++-+.+.+||.++.. -|||
T Consensus 312 RL~DmL~K-------K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~------------------------QRQT 360 (610)
T KOG0341|consen 312 RLMDMLAK-------KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG------------------------QRQT 360 (610)
T ss_pred hHHHHHHH-------hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh------------------------hhhe
Confidence 99999972 24568889999999999999 8888899999999743 3999
Q ss_pred EEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCC
Q 004428 540 VLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQG 619 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~ 619 (754)
||||||||..|+.+++.-+..+ |.+.....| .....|-|....|. .+++.-|++. ++.....
T Consensus 361 LLFSATMP~KIQ~FAkSALVKP---vtvNVGRAG---AAsldViQevEyVk-------qEaKiVylLe-----CLQKT~P 422 (610)
T KOG0341|consen 361 LLFSATMPKKIQNFAKSALVKP---VTVNVGRAG---AASLDVIQEVEYVK-------QEAKIVYLLE-----CLQKTSP 422 (610)
T ss_pred eeeeccccHHHHHHHHhhcccc---eEEeccccc---ccchhHHHHHHHHH-------hhhhhhhHHH-----HhccCCC
Confidence 9999999999999998877664 333322223 23334444333332 1345544332 3344568
Q ss_pred cEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 620 GIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
++|||+-.+.|++.|..||--.|+.+++|||..+|.+|.+|...|+.|+..||||||+|. .|+|+++|+||||||+|.
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS--KGLDFp~iqHVINyDMP~ 500 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS--KGLDFPDIQHVINYDMPE 500 (610)
T ss_pred ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh--ccCCCccchhhccCCChH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechh
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~ 726 (754)
..+-|+||||||||++ .|.+++|+++.
T Consensus 501 eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 501 EIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999998 69999999865
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=456.43 Aligned_cols=369 Identities=16% Similarity=0.184 Sum_probs=287.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
|..+|+++.+|..++|++.|+++|.+. ||.. |||+|.++||.+++++|++++++|| +|||.+|+||
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~----g~~~-ptpiQ~~aip~il~g~dviv~ApTG---------SGKTlayllP 178 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETA----GYEF-PTPIQMQAIPAALSGRSLLVSADTG---------SGKTASFLVP 178 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCEEEEecCC---------CCccHHHHHH
Confidence 456788899999999999999999774 8876 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|+|++..+..- . ..-..|++|||+||||||.||.+.+..+..... .+
T Consensus 179 il~~l~~~~~~~-------------~------------~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~-------~~ 226 (518)
T PLN00206 179 IISRCCTIRSGH-------------P------------SEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP-------FK 226 (518)
T ss_pred HHHHHHhhcccc-------------c------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC-------ce
Confidence 999998543210 0 011368999999999999999999988864321 11
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+||.. ...+..++. .++|||||||++
T Consensus 227 ~~~~~gG~~-----------------------------------------------~~~q~~~l~---~~~~IiV~TPgr 256 (518)
T PLN00206 227 TALVVGGDA-----------------------------------------------MPQQLYRIQ---QGVELIVGTPGR 256 (518)
T ss_pred EEEEECCcc-----------------------------------------------hHHHHHHhc---CCCCEEEECHHH
Confidence 222333321 111112222 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....|+.|.+|||||||+|+ +++.+.+..|+.. +|. +|++
T Consensus 257 L~~~l~~-------~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~---l~~----------------------~q~l 304 (518)
T PLN00206 257 LIDLLSK-------HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQA---LSQ----------------------PQVL 304 (518)
T ss_pred HHHHHHc-------CCccchheeEEEeecHHHHhhcchHHHHHHHHHh---CCC----------------------CcEE
Confidence 9999972 24569999999999999999 4444555555544 343 7999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
+||||+++++..+.+.++.++. .|.+... ......++|.+..++... +...+. .+|.... ...++
T Consensus 305 ~~SATl~~~v~~l~~~~~~~~~-~i~~~~~-----~~~~~~v~q~~~~~~~~~-------k~~~l~-~~l~~~~-~~~~~ 369 (518)
T PLN00206 305 LFSATVSPEVEKFASSLAKDII-LISIGNP-----NRPNKAVKQLAIWVETKQ-------KKQKLF-DILKSKQ-HFKPP 369 (518)
T ss_pred EEEeeCCHHHHHHHHHhCCCCE-EEEeCCC-----CCCCcceeEEEEeccchh-------HHHHHH-HHHHhhc-ccCCC
Confidence 9999999999999998887742 3333221 123456788877765321 211111 1222111 23468
Q ss_pred EEEEecchhcHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKS-QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~-~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
+||||++...+..|.+.|.. .++.+..+|+.+++.+|..++..|++|+++|||||++++ ||+||++|++||||++|.
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~--rGiDip~v~~VI~~d~P~ 447 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLG--RGVDLLRVRQVIIFDMPN 447 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhh--ccCCcccCCEEEEeCCCC
Confidence 99999999999999999975 699999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
+++.|+||+||+||.+ .|.|++|++..|...+..++
T Consensus 448 s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 448 TIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred CHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 9999999999999998 69999999998876665554
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-50 Score=458.15 Aligned_cols=362 Identities=18% Similarity=0.227 Sum_probs=285.1
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|++|+|++.|+++|.++ ||.. |||||+++||.+++++||+++++|| +|||.+|+||+|+++++.
T Consensus 9 ~~f~~l~l~~~l~~~L~~~----g~~~-ptpiQ~~~ip~~l~G~Dvi~~ApTG---------SGKTlafllpil~~l~~~ 74 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESA----GFTR-CTPIQALTLPVALPGGDVAGQAQTG---------TGKTLAFLVAVMNRLLSR 74 (572)
T ss_pred CChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEEcCCC---------CcHHHHHHHHHHHHHHhc
Confidence 4699999999999999875 8876 9999999999999999999999998 999999999999999864
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
... .+..-..|++|||+||||||.|+.+.+.+++.... .+....||+.
T Consensus 75 ~~~-------------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~-------i~v~~l~Gg~ 122 (572)
T PRK04537 75 PAL-------------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLG-------LRFALVYGGV 122 (572)
T ss_pred ccc-------------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCC-------ceEEEEECCC
Confidence 210 00111258999999999999999999998865431 1223334432
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.+.. +.+++. .++|||||||++|.+++..
T Consensus 123 -----------------------------------------------~~~~-q~~~l~--~~~dIiV~TP~rL~~~l~~- 151 (572)
T PRK04537 123 -----------------------------------------------DYDK-QRELLQ--QGVDVIIATPGRLIDYVKQ- 151 (572)
T ss_pred -----------------------------------------------CHHH-HHHHHh--CCCCEEEECHHHHHHHHHh-
Confidence 2221 222222 3689999999999999863
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
.....|+.|++|||||||.|+ ++++.++..|+.. +|.. ..||+|+||||++.
T Consensus 152 -----~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~---lp~~-------------------~~~q~ll~SATl~~ 204 (572)
T PRK04537 152 -----HKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRR---MPER-------------------GTRQTLLFSATLSH 204 (572)
T ss_pred -----ccccchhheeeeEecCHHHHhhcchHHHHHHHHHh---cccc-------------------cCceEEEEeCCccH
Confidence 234468999999999999998 4455566665554 4541 13899999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecch
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSY 628 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy 628 (754)
.+..+...++.++ ..+.+.... .....+.|.++... .+.+..+ ++..+......++||||++.
T Consensus 205 ~v~~l~~~~l~~p-~~i~v~~~~-----~~~~~i~q~~~~~~-------~~~k~~~----L~~ll~~~~~~k~LVF~nt~ 267 (572)
T PRK04537 205 RVLELAYEHMNEP-EKLVVETET-----ITAARVRQRIYFPA-------DEEKQTL----LLGLLSRSEGARTMVFVNTK 267 (572)
T ss_pred HHHHHHHHHhcCC-cEEEecccc-----ccccceeEEEEecC-------HHHHHHH----HHHHHhcccCCcEEEEeCCH
Confidence 9999999888774 344443221 12346778776542 1334432 22223334567899999999
Q ss_pred hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 629 FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 629 ~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
..+..|..+|.+.++.+..+|+.+++.+|.++++.|++|+++|||+||+++ ||+||++|++||||++|.+++.|+||+
T Consensus 268 ~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~a--rGIDip~V~~VInyd~P~s~~~yvqRi 345 (572)
T PRK04537 268 AFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAA--RGLHIDGVKYVYNYDLPFDAEDYVHRI 345 (572)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhh--cCCCccCCCEEEEcCCCCCHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccCCCC-CceEEEEechhcHHHHHHH
Q 004428 709 NMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 709 grt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
||+||.+ .|.|++|++..|...|..|
T Consensus 346 GRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 346 GRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred cccccCCCCceEEEEecHHHHHHHHHH
Confidence 9999987 7999999998887666544
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=416.24 Aligned_cols=358 Identities=16% Similarity=0.233 Sum_probs=291.1
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|+++||++.|++.+-.. ||.. |+.||+.++|.|+.|+||++.|++| ||||++|.+-+|+-+
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~y----Gfek-PS~IQqrAi~~IlkGrdViaQaqSG---------TGKTa~~si~vlq~~ 89 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAY----GFEK-PSAIQQRAIPQILKGRDVIAQAQSG---------TGKTATFSISVLQSL 89 (400)
T ss_pred ccccchhhcCchHHHHHHHHHh----ccCC-chHHHhhhhhhhhcccceEEEecCC---------CCceEEEEeeeeeec
Confidence 3467899999999999999986 8876 9999999999999999999999998 999999999988766
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
.-+ -...+||||.||||||.||.+.+..|+.+.. | .-| .+.
T Consensus 90 d~~--------------------------------~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn---v---q~h-aci 130 (400)
T KOG0328|consen 90 DIS--------------------------------VRETQALILSPTRELAVQIQKVILALGDYMN---V---QCH-ACI 130 (400)
T ss_pred ccc--------------------------------cceeeEEEecChHHHHHHHHHHHHHhccccc---c---eEE-EEe
Confidence 311 1126899999999999999999999987653 1 112 223
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
||. + +|-.+. .+ . |+.+++.+||||+.++|
T Consensus 131 gg~--------------------------------------n-----~gedik--kl---d--~G~hvVsGtPGrv~dmi 160 (400)
T KOG0328|consen 131 GGK--------------------------------------N-----LGEDIK--KL---D--YGQHVVSGTPGRVLDMI 160 (400)
T ss_pred cCC--------------------------------------c-----cchhhh--hh---c--ccceEeeCCCchHHHHH
Confidence 332 1 122222 12 2 89999999999999999
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
. +....-..|.+|||||||.||... -+.+.+|+.. +|.. -|.++||||
T Consensus 161 k-------r~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~---lp~~---------------------~Qvv~~SAT 209 (400)
T KOG0328|consen 161 K-------RRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRY---LPPG---------------------AQVVLVSAT 209 (400)
T ss_pred H-------hccccccceeEEEeccHHHHHHhhHHHHHHHHHHh---CCCC---------------------ceEEEEecc
Confidence 7 345557799999999999999543 3455555554 5754 699999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEE
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLF 624 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIF 624 (754)
+|.+|....++|+.++ .+|-++.. + .....|+|.|.-++... -+|. .|-.|-+ ....+.+||
T Consensus 210 lp~eilemt~kfmtdp-vrilvkrd--e---ltlEgIKqf~v~ve~Ee------wKfd-----tLcdLYd~LtItQavIF 272 (400)
T KOG0328|consen 210 LPHEILEMTEKFMTDP-VRILVKRD--E---LTLEGIKQFFVAVEKEE------WKFD-----TLCDLYDTLTITQAVIF 272 (400)
T ss_pred CcHHHHHHHHHhcCCc-eeEEEecC--C---Cchhhhhhheeeechhh------hhHh-----HHHHHhhhhehheEEEE
Confidence 9999999999999995 45555433 2 24567999999887532 2554 2222222 346899999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
|+++.-.+-|+..|+..++.+.++||++.|++|..++..|++|+.+|||+||+++ ||+||+.|++|||||||.+.+.|
T Consensus 273 cnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwa--RGiDv~qVslviNYDLP~nre~Y 350 (400)
T KOG0328|consen 273 CNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWA--RGIDVQQVSLVINYDLPNNRELY 350 (400)
T ss_pred ecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhh--ccCCcceeEEEEecCCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhhccccCCCC-CceEEEEechhcHHHH---HHHhCc
Q 004428 705 PEIVNMLEGSH-NMTCTVLFSRFDMLRL---ERIVGS 737 (754)
Q Consensus 705 ~erigrt~ra~-~g~~~~L~sk~D~~~L---ErIVGt 737 (754)
+|||||.||-| .|.|+.++...|...| |+..++
T Consensus 351 IHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 351 IHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred hhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhh
Confidence 99999999988 7999999998887665 555554
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-50 Score=434.55 Aligned_cols=368 Identities=17% Similarity=0.236 Sum_probs=282.6
Q ss_pred cCCCC--CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 232 YSDYG--LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 232 f~~l~--L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
|++++ |.+.|++++... ||.. .||+|..+||.+++++||.+-+.|| +|||.||++|+|.-|++.
T Consensus 6 ~~~l~~~L~~~l~~~l~~~----GF~~-mTpVQa~tIPlll~~KDVvveavTG---------SGKTlAFllP~le~i~rr 71 (567)
T KOG0345|consen 6 FSSLAPPLSPWLLEALDES----GFEK-MTPVQAATIPLLLKNKDVVVEAVTG---------SGKTLAFLLPMLEIIYRR 71 (567)
T ss_pred hhhcCCCccHHHHHHHHhc----CCcc-cCHHHHhhhHHHhcCCceEEEcCCC---------CCchhhHHHHHHHHHHhh
Confidence 44443 558999998874 8875 7999999999999999999999998 899999999999999754
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
-. ++ +++ ..-+|||.||||||.||.+.+..+..+...+++
T Consensus 72 ~~-------~~-------------------~~~-~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~------------- 111 (567)
T KOG0345|consen 72 EA-------KT-------------------PPG-QVGALIISPTRELARQIREVAQPFLEHLPNLNC------------- 111 (567)
T ss_pred cc-------CC-------------------Ccc-ceeEEEecCcHHHHHHHHHHHHHHHHhhhccce-------------
Confidence 11 00 111 234899999999999999999988544211111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
..+.|| ..+. .-++-|.. .++.|+|||||||.++++.
T Consensus 112 -------------------------------~l~vGG---------~~v~-~Di~~fke-e~~nIlVgTPGRL~di~~~- 148 (567)
T KOG0345|consen 112 -------------------------------ELLVGG---------RSVE-EDIKTFKE-EGPNILVGTPGRLLDILQR- 148 (567)
T ss_pred -------------------------------EEEecC---------ccHH-HHHHHHHH-hCCcEEEeCchhHHHHHhc-
Confidence 222333 2222 22333333 6899999999999999983
Q ss_pred hcccccCcccCC--ceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 470 EENKEQDVDYLS--SIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 470 e~~k~rd~dfLS--SIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
....|| ++++|||||||++| ||+-.++..|+..| |++ |-|=|||||+
T Consensus 149 ------~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~L---PKQ---------------------RRTGLFSATq 198 (567)
T KOG0345|consen 149 ------EAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFL---PKQ---------------------RRTGLFSATQ 198 (567)
T ss_pred ------hhhhccccccceEEecchHhHhcccHHHHHHHHHHhc---ccc---------------------cccccccchh
Confidence 344566 99999999999999 88888888888764 886 9999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEec
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
+.++..|+...++|+ ..|.+...... .....+.-.|..++ ++.++. .++..|......++|||.|
T Consensus 199 ~~~v~dL~raGLRNp-v~V~V~~k~~~---~tPS~L~~~Y~v~~-------a~eK~~----~lv~~L~~~~~kK~iVFF~ 263 (567)
T KOG0345|consen 199 TQEVEDLARAGLRNP-VRVSVKEKSKS---ATPSSLALEYLVCE-------ADEKLS----QLVHLLNNNKDKKCIVFFP 263 (567)
T ss_pred hHHHHHHHHhhccCc-eeeeecccccc---cCchhhcceeeEec-------HHHHHH----HHHHHHhccccccEEEEec
Confidence 999999999999995 46665443211 12233444455543 356665 3333444556799999999
Q ss_pred chhcHHHHHHHHHh--CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 627 SYFEFVRLRNFLKS--QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~--~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
|+.........|.. ..+++++|||-++|++|++++..|++-...+|++||+|+ ||+||+||..||.||||.+|..+
T Consensus 264 TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaA--RGlDip~iD~VvQ~DpP~~~~~F 341 (567)
T KOG0345|consen 264 TCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAA--RGLDIPGIDLVVQFDPPKDPSSF 341 (567)
T ss_pred CcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhh--ccCCCCCceEEEecCCCCChhHH
Confidence 99888877777764 478999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhccccCCCC-CceEEEEechhc-----HHHHHHHhCchHHHHh
Q 004428 705 PEIVNMLEGSH-NMTCTVLFSRFD-----MLRLERIVGSAHAKKM 743 (754)
Q Consensus 705 ~erigrt~ra~-~g~~~~L~sk~D-----~~~LErIVGt~ra~~m 743 (754)
+||||||+|+| .|.|++|..+.+ .+++-++|-.++-..+
T Consensus 342 vHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e 386 (567)
T KOG0345|consen 342 VHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTE 386 (567)
T ss_pred HhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhccc
Confidence 99999999998 699999887543 2344444444443333
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=426.59 Aligned_cols=360 Identities=20% Similarity=0.247 Sum_probs=298.9
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
-..|.+|.|++.|+..+-++ ||.. |+|||.++||+++.|+|||+.|++| ||||+|||+|+|+.|..
T Consensus 84 G~efEd~~Lkr~LLmgIfe~----G~ek-PSPiQeesIPiaLtGrdiLaRaKNG---------TGKT~a~~IP~Lekid~ 149 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEK----GFEK-PSPIQEESIPIALTGRDILARAKNG---------TGKTAAYCIPVLEKIDP 149 (459)
T ss_pred CccHHHhhhhHHHHHHHHHh----ccCC-CCCccccccceeecchhhhhhccCC---------CCCccceechhhhhcCc
Confidence 35699999999999999886 8864 9999999999999999999999887 99999999999999854
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
..+ ..+++|||||||||+|+....+.++.+.+ + +.+-.-||
T Consensus 150 ~~~--------------------------------~IQ~~ilVPtrelALQtSqvc~~lskh~~-i------~vmvttGG 190 (459)
T KOG0326|consen 150 KKN--------------------------------VIQAIILVPTRELALQTSQVCKELSKHLG-I------KVMVTTGG 190 (459)
T ss_pred ccc--------------------------------ceeEEEEeecchhhHHHHHHHHHHhcccC-e------EEEEecCC
Confidence 321 24679999999999999999999998764 2 22333344
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. .+.-.-++||. ..+++||||||+.++++
T Consensus 191 T-----------------------------------------------~lrDDI~Rl~~---~VH~~vgTPGRIlDL~~- 219 (459)
T KOG0326|consen 191 T-----------------------------------------------SLRDDIMRLNQ---TVHLVVGTPGRILDLAK- 219 (459)
T ss_pred c-----------------------------------------------ccccceeeecC---ceEEEEcCChhHHHHHh-
Confidence 3 22223455664 58999999999999987
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
++..-||.+.+||+||||.||.+-| ...|-+.|..+|++ ||.||||||+|-
T Consensus 220 ------KgVa~ls~c~~lV~DEADKlLs~~F--~~~~e~li~~lP~~---------------------rQillySATFP~ 270 (459)
T KOG0326|consen 220 ------KGVADLSDCVILVMDEADKLLSVDF--QPIVEKLISFLPKE---------------------RQILLYSATFPL 270 (459)
T ss_pred ------cccccchhceEEEechhhhhhchhh--hhHHHHHHHhCCcc---------------------ceeeEEecccch
Confidence 3566799999999999999997644 33444555667986 999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecch
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSY 628 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy 628 (754)
.+..+..+|++|+- .|.+-.+- ....|.|.|-.|....+. +-+++++.+| ...+.+|||+|.
T Consensus 271 tVk~Fm~~~l~kPy-~INLM~eL------tl~GvtQyYafV~e~qKv--------hCLntLfskL---qINQsIIFCNS~ 332 (459)
T KOG0326|consen 271 TVKGFMDRHLKKPY-EINLMEEL------TLKGVTQYYAFVEERQKV--------HCLNTLFSKL---QINQSIIFCNST 332 (459)
T ss_pred hHHHHHHHhccCcc-eeehhhhh------hhcchhhheeeechhhhh--------hhHHHHHHHh---cccceEEEeccc
Confidence 99999999999963 44443221 245799999998754332 3445565555 358899999999
Q ss_pred hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 629 FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 629 ~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
..+.-|+......|+++..||.-|.|..|.|.-+.|++|.++.|||||.+- ||+||..|..|||||.|.++|.|.|||
T Consensus 333 ~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~T--RGIDiqavNvVINFDfpk~aEtYLHRI 410 (459)
T KOG0326|consen 333 NRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFT--RGIDIQAVNVVINFDFPKNAETYLHRI 410 (459)
T ss_pred hHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhh--cccccceeeEEEecCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999977 999999999999999999999999999
Q ss_pred cccCCCC-CceEEEEechhc---HHHHHHHhCchHHH
Q 004428 709 NMLEGSH-NMTCTVLFSRFD---MLRLERIVGSAHAK 741 (754)
Q Consensus 709 grt~ra~-~g~~~~L~sk~D---~~~LErIVGt~ra~ 741 (754)
||.||-| -|.|+.|+|..| ++++|.-+|++...
T Consensus 411 GRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 411 GRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred cCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 9999988 599999999666 56678889997643
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=429.41 Aligned_cols=356 Identities=18% Similarity=0.280 Sum_probs=280.3
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
++|++++|.+.|+++|.++ ||.. |||+|+++||.+++++|++++++|| +|||.+|+||+|+|++..
T Consensus 1 ~~f~~l~l~~~l~~~l~~~----g~~~-p~~iQ~~ai~~~~~g~d~l~~apTG---------sGKT~~~~lp~l~~l~~~ 66 (434)
T PRK11192 1 TTFSELELDESLLEALQDK----GYTR-PTAIQAEAIPPALDGRDVLGSAPTG---------TGKTAAFLLPALQHLLDF 66 (434)
T ss_pred CCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHhhc
Confidence 3699999999999999885 8876 8999999999999999999999998 899999999999999753
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+. ..+ ..++||||+|||+||.|+.+.+..++.... .+...
T Consensus 67 ~~---------------------------~~~-~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~-------~~v~~----- 106 (434)
T PRK11192 67 PR---------------------------RKS-GPPRILILTPTRELAMQVADQARELAKHTH-------LDIAT----- 106 (434)
T ss_pred cc---------------------------cCC-CCceEEEECCcHHHHHHHHHHHHHHHccCC-------cEEEE-----
Confidence 11 011 257999999999999999999999875432 11222
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+.|| +.+.... ..+. .++|||||||++|.+++..
T Consensus 107 ---------------------------------~~gg---------~~~~~~~-~~l~--~~~~IlV~Tp~rl~~~~~~- 140 (434)
T PRK11192 107 ---------------------------------ITGG---------VAYMNHA-EVFS--ENQDIVVATPGRLLQYIKE- 140 (434)
T ss_pred ---------------------------------EECC---------CCHHHHH-HHhc--CCCCEEEEChHHHHHHHHc-
Confidence 2222 2222222 2232 4689999999999999862
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
..+ .+.+|++|||||||+|+ |++...+..|...+ |. .+|+++||||++.
T Consensus 141 -----~~~-~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~---~~---------------------~~q~~~~SAT~~~ 190 (434)
T PRK11192 141 -----ENF-DCRAVETLILDEADRMLDMGFAQDIETIAAET---RW---------------------RKQTLLFSATLEG 190 (434)
T ss_pred -----CCc-CcccCCEEEEECHHHHhCCCcHHHHHHHHHhC---cc---------------------ccEEEEEEeecCH
Confidence 223 48999999999999999 55555565554432 32 3899999999985
Q ss_pred -HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEec
Q 004428 549 -EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLS 626 (754)
Q Consensus 549 -einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~ 626 (754)
.+..+...++.++ ..+.+.+. ......|.|.+..++.. +.+. .+|-.+.. ....++||||+
T Consensus 191 ~~~~~~~~~~~~~~-~~i~~~~~-----~~~~~~i~~~~~~~~~~------~~k~-----~~l~~l~~~~~~~~~lVF~~ 253 (434)
T PRK11192 191 DAVQDFAERLLNDP-VEVEAEPS-----RRERKKIHQWYYRADDL------EHKT-----ALLCHLLKQPEVTRSIVFVR 253 (434)
T ss_pred HHHHHHHHHHccCC-EEEEecCC-----cccccCceEEEEEeCCH------HHHH-----HHHHHHHhcCCCCeEEEEeC
Confidence 4777777666653 34444322 12345688888776421 2233 23434433 35689999999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
+...+.+|...|+..++.+..+|+.+++.+|..++..|++|+++|||+||+++ ||+||++|++||||++|.+++.|.|
T Consensus 254 s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~--~GiDip~v~~VI~~d~p~s~~~yiq 331 (434)
T PRK11192 254 TRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAA--RGIDIDDVSHVINFDMPRSADTYLH 331 (434)
T ss_pred ChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccc--cCccCCCCCEEEEECCCCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||+||++ .|.|++|++..|...|.+|
T Consensus 332 r~GR~gR~g~~g~ai~l~~~~d~~~~~~i 360 (434)
T PRK11192 332 RIGRTGRAGRKGTAISLVEAHDHLLLGKI 360 (434)
T ss_pred cccccccCCCCceEEEEecHHHHHHHHHH
Confidence 999999987 6999999999987666443
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=433.54 Aligned_cols=360 Identities=19% Similarity=0.239 Sum_probs=295.9
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+..|++|.|+.+.++.|.+. +|.. +|.||+.+||..+.|+|||+.|+|| +|||.||++|+|.||+.
T Consensus 68 ~~kF~dlpls~~t~kgLke~----~fv~-~teiQ~~~Ip~aL~G~DvlGAAkTG---------SGKTLAFlvPvlE~L~r 133 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEA----KFVK-MTEIQRDTIPMALQGHDVLGAAKTG---------SGKTLAFLVPVLEALYR 133 (758)
T ss_pred hhhHHhCCCchHHHHhHhhc----CCcc-HHHHHHhhcchhccCcccccccccC---------CCceeeehHHHHHHHHH
Confidence 45799999999999999884 7876 8999999999999999999999998 89999999999999986
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+= -..-| -=+|||.||||||+|+.+.|.+++.+.. |..
T Consensus 134 ~kW-------------------------s~~DG---lGalIISPTRELA~QtFevL~kvgk~h~-------------fSa 172 (758)
T KOG0343|consen 134 LKW-------------------------SPTDG---LGALIISPTRELALQTFEVLNKVGKHHD-------------FSA 172 (758)
T ss_pred cCC-------------------------CCCCC---ceeEEecchHHHHHHHHHHHHHHhhccc-------------ccc
Confidence 521 11123 3489999999999999999999976542 211
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
-.+.||++ +++.+-.+ .+..|+|||||||..+|.+
T Consensus 173 --------------------------------GLiiGG~~-------~k~E~eRi------~~mNILVCTPGRLLQHmde 207 (758)
T KOG0343|consen 173 --------------------------------GLIIGGKD-------VKFELERI------SQMNILVCTPGRLLQHMDE 207 (758)
T ss_pred --------------------------------ceeecCch-------hHHHHHhh------hcCCeEEechHHHHHHhhh
Confidence 12455543 45555444 4789999999999999974
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ -.-..++++||||||||+|| |+|-..+..|++.| |++ |||||||||.+
T Consensus 208 ~------~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l---P~~---------------------RQTLLFSATqt 257 (758)
T KOG0343|consen 208 N------PNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL---PKK---------------------RQTLLFSATQT 257 (758)
T ss_pred c------CCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC---Chh---------------------heeeeeecccc
Confidence 2 23347899999999999999 88878888887764 765 99999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..|++-.+.|| ..|.+.... ...+..+++|.|+.++... ++. .++..|......++|||++|
T Consensus 258 ~svkdLaRLsL~dP-~~vsvhe~a---~~atP~~L~Q~y~~v~l~~-------Ki~----~L~sFI~shlk~K~iVF~Ss 322 (758)
T KOG0343|consen 258 KSVKDLARLSLKDP-VYVSVHENA---VAATPSNLQQSYVIVPLED-------KID----MLWSFIKSHLKKKSIVFLSS 322 (758)
T ss_pred hhHHHHHHhhcCCC-cEEEEeccc---cccChhhhhheEEEEehhh-------HHH----HHHHHHHhccccceEEEEeh
Confidence 99999997666775 466665221 1235668999999988543 332 34444555567899999999
Q ss_pred hhcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 628 YFEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 628 y~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
+..+.-|...|.+. |++..++||-++|..|......|-..+.-||.|||+++ ||+|++.|..||-||-|.+.+.|+
T Consensus 323 cKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~a--RGLDFpaVdwViQ~DCPedv~tYI 400 (758)
T KOG0343|consen 323 CKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAA--RGLDFPAVDWVIQVDCPEDVDTYI 400 (758)
T ss_pred hhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhh--ccCCCcccceEEEecCchhHHHHH
Confidence 99999999999864 99999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhc-HHHHHHHh
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFD-MLRLERIV 735 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D-~~~LErIV 735 (754)
||+|||+|.. .|.|..+.++.+ ...|.++-
T Consensus 401 HRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 401 HRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred HHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999987 689999999887 44444443
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=425.04 Aligned_cols=380 Identities=17% Similarity=0.202 Sum_probs=291.9
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
....|+.+||++.|.++|.+.+ ++.. ||.+|+++||.+++|+|+++.++|| +|||.|||||+++||.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m---~i~~-pTsVQkq~IP~lL~grD~lV~aQTG---------SGKTLAYllPiVq~Lq 200 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKM---KISA-PTSVQKQAIPVLLEGRDALVRAQTG---------SGKTLAYLLPIVQSLQ 200 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHh---ccCc-cchHhhcchhhhhcCcceEEEcCCC---------CcccHHHHHHHHHHHH
Confidence 3567999999999999999874 6665 8999999999999999999999999 8999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+--.+| + |. ..|-+||||||||||+||.+++.+|...-.++ |. ....|
T Consensus 201 ~m~~ki-------~----------------Rs---~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWI-VP-----g~lmG 248 (708)
T KOG0348|consen 201 AMEPKI-------Q----------------RS---DGPYALVIVPTRELALQIYETVQKLLKPFHWI-VP-----GVLMG 248 (708)
T ss_pred hcCccc-------c----------------cc---CCceEEEEechHHHHHHHHHHHHHHhcCceEE-ee-----ceeec
Confidence 653221 1 22 34889999999999999999999996433221 10 11223
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
|+.- +-.+..|+ .+..|+|+|||||.|+|.
T Consensus 249 GEkk---------------------------------------------KSEKARLR-----KGiNILIgTPGRLvDHLk 278 (708)
T KOG0348|consen 249 GEKK---------------------------------------------KSEKARLR-----KGINILIGTPGRLVDHLK 278 (708)
T ss_pred cccc---------------------------------------------ccHHHHHh-----cCceEEEcCchHHHHHHh
Confidence 3310 01122233 589999999999999998
Q ss_pred hhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
++. ...+|.+..||+||||+|| |++-..+..|++.+..+|... |-+- .-.+-+|+||+|||+
T Consensus 279 nT~------~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e--~~~~---------~lp~q~q~mLlSATL 341 (708)
T KOG0348|consen 279 NTK------SIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE--CKDP---------KLPHQLQNMLLSATL 341 (708)
T ss_pred ccc------hheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh--cccc---------cccHHHHhHhhhhhh
Confidence 642 3458899999999999999 777779999999997765421 1111 111249999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeeccc--------------C----cc--cccccceeEEEEEeccCcccchhHHHHHHHH
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYK--------------G----VL--PKVLLNVRQIYERFNADSIAKADDARLEYFT 606 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~--------------g----~i--~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~ 606 (754)
+..++.|+.-.++++ ..|.+..... | .+ ..+..++.|.|..|++. .|+--+.
T Consensus 342 td~V~rLa~~sLkDp-v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-------LRLV~La 413 (708)
T KOG0348|consen 342 TDGVNRLADLSLKDP-VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-------LRLVALA 413 (708)
T ss_pred HHHHHHHhhccccCc-eeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc-------hhHHHHH
Confidence 999999999888885 3444211000 1 01 12345788999998863 4665444
Q ss_pred HHHhHHhhhcCCCcEEEEecch----hcHHHHHHHHHh------------------CCCceEeecCCCCHHHHHHHHHHH
Q 004428 607 KKVFPKIKDSIQGGIMLFLSSY----FEFVRLRNFLKS------------------QNASFCLLGDYTEPSDISRARVWF 664 (754)
Q Consensus 607 ~~iLp~l~~~~~~~tLIFv~Sy----~d~vrlrn~Lk~------------------~~~~f~~Ihey~sq~~r~rar~~F 664 (754)
..|+..+......+++||+++. |.|.-+...|.. .+..|.-+||.|+|.+|+.+.+.|
T Consensus 414 a~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~F 493 (708)
T KOG0348|consen 414 ALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEF 493 (708)
T ss_pred HHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhh
Confidence 3333334444556899999987 666666666654 246789999999999999999999
Q ss_pred hcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHH
Q 004428 665 FEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDML 729 (754)
Q Consensus 665 ~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~ 729 (754)
.+-+.-||||||||+ ||+|++.|..||-|++|..+..|+||||||+|+| +|.++-+..+.++.
T Consensus 494 s~~~~~VLLcTDVAa--RGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 494 SHSRRAVLLCTDVAA--RGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred ccccceEEEehhhhh--ccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHH
Confidence 999999999999999 9999999999999999999999999999999998 78888877877765
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=417.21 Aligned_cols=371 Identities=18% Similarity=0.232 Sum_probs=288.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
....|.+++|++.|.++|.+. |+.. |||+|+++||.+++|+||+++++|| +|||.+|+||+|++++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~iQ~~ai~~~~~G~dvi~~apTG---------SGKTlay~lpil~~l~ 150 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDL----GFPY-CTPIQAQVLGYTLAGHDAIGRAQTG---------TGKTAAFLISIINQLL 150 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHH
Confidence 356799999999999999884 8876 8999999999999999999999998 9999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+.+.. ..+-. ..|++|||+|||+||.|+.+.+..|..... + +....+|
T Consensus 151 ~~~~~-----------------------~~~~~--~~~~aLil~PtreLa~Q~~~~~~~l~~~~~-~------~v~~~~g 198 (475)
T PRK01297 151 QTPPP-----------------------KERYM--GEPRALIIAPTRELVVQIAKDAAALTKYTG-L------NVMTFVG 198 (475)
T ss_pred hcCcc-----------------------ccccc--CCceEEEEeCcHHHHHHHHHHHHHhhccCC-C------EEEEEEc
Confidence 65320 00111 258999999999999999999999865431 1 1112222
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .+....-.+.. ..+||||+||++|.+++.
T Consensus 199 g~-----------------------------------------------~~~~~~~~~~~--~~~~Iiv~TP~~Ll~~~~ 229 (475)
T PRK01297 199 GM-----------------------------------------------DFDKQLKQLEA--RFCDILVATPGRLLDFNQ 229 (475)
T ss_pred cC-----------------------------------------------ChHHHHHHHhC--CCCCEEEECHHHHHHHHH
Confidence 21 11111111111 468999999999998876
Q ss_pred hhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
+...+|+.+.+|||||||.|+ +.+...+..|+..+ |.. ..||+++||||+
T Consensus 230 -------~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~---~~~-------------------~~~q~i~~SAT~ 280 (475)
T PRK01297 230 -------RGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT---PRK-------------------EERQTLLFSATF 280 (475)
T ss_pred -------cCCcccccCceEEechHHHHHhcccHHHHHHHHHhC---CCC-------------------CCceEEEEEeec
Confidence 345689999999999999998 44445555555543 421 137999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHh-hhcCCCcEEEEe
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKI-KDSIQGGIMLFL 625 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l-~~~~~~~tLIFv 625 (754)
+..+..++..++.++ ..+.+.... .....+.|.+..+... .+.. +|..+ ......++||||
T Consensus 281 ~~~~~~~~~~~~~~~-~~v~~~~~~-----~~~~~~~~~~~~~~~~-------~k~~-----~l~~ll~~~~~~~~IVF~ 342 (475)
T PRK01297 281 TDDVMNLAKQWTTDP-AIVEIEPEN-----VASDTVEQHVYAVAGS-------DKYK-----LLYNLVTQNPWERVMVFA 342 (475)
T ss_pred CHHHHHHHHHhccCC-EEEEeccCc-----CCCCcccEEEEEecch-------hHHH-----HHHHHHHhcCCCeEEEEe
Confidence 999999999888875 344443221 1234577777765432 1222 22222 233457999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
++...+..|...|...++++..+|+++++.+|.+.+..|++|+++|||+|+++. ||+||++|++||+|++|.++..|.
T Consensus 343 ~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~--~GIDi~~v~~VI~~~~P~s~~~y~ 420 (475)
T PRK01297 343 NRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG--RGIHIDGISHVINFTLPEDPDDYV 420 (475)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccc--cCCcccCCCEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhcHH---HHHHHhCchHHHH
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAHAKK 742 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~ra~~ 742 (754)
||+||+||.+ .|.|++|++..|.. .+|+++|.+..+.
T Consensus 421 Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~ 461 (475)
T PRK01297 421 HRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCE 461 (475)
T ss_pred HhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCccc
Confidence 9999999988 69999999988865 4577788765433
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=440.57 Aligned_cols=399 Identities=16% Similarity=0.211 Sum_probs=313.3
Q ss_pred CCCchhhhcCCCCCHHHHHHHhcccceeeeeecccCCCcceecCCCcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCC
Q 004428 177 HASSFHEHFGYNLSKEEVDDLSKKKLKYEWEVPAVDMSNCKWVGTGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGND 256 (754)
Q Consensus 177 ~~d~F~~Hf~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~ 256 (754)
+.-||-. +.-+...+|..+++.....-. .+.-.+ ..-+...|+++.+....|+...++..++++ ||..
T Consensus 320 ~~epFRk--nfy~e~~di~~ms~~eV~~yr----~~l~~i--~v~g~~~pkpv~sW~q~gl~~~il~tlkkl----~y~k 387 (997)
T KOG0334|consen 320 SYEPFRK--NFYIEVRDIKRMSAAEVDEYR----CELDGI--KVKGKECPKPVTSWTQCGLSSKILETLKKL----GYEK 387 (997)
T ss_pred cchhhhh--cccccchhHHHHHHHHHHHhh----cCccce--eeccCCCCcccchHhhCCchHHHHHHHHHh----cCCC
Confidence 4577877 444666777777554322100 011001 122456788899999999999999999775 8875
Q ss_pred CCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 257 FHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 257 ~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
|||||.++||.|++|+|||+.|.|| +|||.+|+||++-|++-.|.. +
T Consensus 388 -~~~IQ~qAiP~ImsGrdvIgvakTg---------SGKT~af~LPmirhi~dQr~~---------------~-------- 434 (997)
T KOG0334|consen 388 -PTPIQAQAIPAIMSGRDVIGVAKTG---------SGKTLAFLLPMIRHIKDQRPL---------------E-------- 434 (997)
T ss_pred -CcchhhhhcchhccCcceEEeeccC---------CccchhhhcchhhhhhcCCCh---------------h--------
Confidence 9999999999999999999999998 899999999999999877651 1
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
-| ..|-+|||+||||||.||...+.+|+.... -|+.+.||+..
T Consensus 435 ---~g-dGPi~li~aPtrela~QI~r~~~kf~k~l~-------ir~v~vygg~~-------------------------- 477 (997)
T KOG0334|consen 435 ---EG-DGPIALILAPTRELAMQIHREVRKFLKLLG-------IRVVCVYGGSG-------------------------- 477 (997)
T ss_pred ---hC-CCceEEEEcCCHHHHHHHHHHHHHHHhhcC-------ceEEEecCCcc--------------------------
Confidence 12 259999999999999999999999986643 38888898762
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
++-+..-+| .+++|+||||||.++++-..- ...-.|-.+-+||+||||+|+|
T Consensus 478 -------------------~~~qiaelk-----Rg~eIvV~tpGRmiD~l~~n~----grvtnlrR~t~lv~deaDrmfd 529 (997)
T KOG0334|consen 478 -------------------ISQQIAELK-----RGAEIVVCTPGRMIDILCANS----GRVTNLRRVTYLVLDEADRMFD 529 (997)
T ss_pred -------------------HHHHHHHHh-----cCCceEEeccchhhhhHhhcC----Cccccccccceeeechhhhhhe
Confidence 332333344 689999999999999885211 1233455555999999999995
Q ss_pred cCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcc
Q 004428 497 QNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVL 575 (754)
Q Consensus 497 QNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i 575 (754)
..+ ..+..|++++ |+| |||++||||++-.|.+|+++.++ .++.|.+ .+.+
T Consensus 530 mgfePq~~~Ii~nl---------------rpd---------rQtvlfSatfpr~m~~la~~vl~-~Pveiiv--~~~s-- 580 (997)
T KOG0334|consen 530 MGFEPQITRILQNL---------------RPD---------RQTVLFSATFPRSMEALARKVLK-KPVEIIV--GGRS-- 580 (997)
T ss_pred eccCcccchHHhhc---------------chh---------hhhhhhhhhhhHHHHHHHHHhhc-CCeeEEE--ccce--
Confidence 444 4444455543 444 99999999999999999999888 6656444 2333
Q ss_pred cccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCH
Q 004428 576 PKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEP 654 (754)
Q Consensus 576 ~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq 654 (754)
.|...|.|.|..+.. .+.||.. ++..|.. ....+|||||.+...++-|...|.+.++.+.+|||..+|
T Consensus 581 -vV~k~V~q~v~V~~~------e~eKf~k----L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q 649 (997)
T KOG0334|consen 581 -VVCKEVTQVVRVCAI------ENEKFLK----LLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQ 649 (997)
T ss_pred -eEeccceEEEEEecC------chHHHHH----HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCch
Confidence 355678998887652 2456653 3333321 347899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhc
Q 004428 655 SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 655 ~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D 727 (754)
.+|+.....|++|.+.+||+|++++ ||+|++.+..||||+.|.+-+.|+||+|||||++ .|.|++|.++.|
T Consensus 650 ~dR~sti~dfK~~~~~LLvaTsvva--rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 650 HDRSSTIEDFKNGVVNLLVATSVVA--RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred HHHHhHHHHHhccCceEEEehhhhh--cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHH
Confidence 9999999999999999999999999 9999999999999999999999999999999998 789999998844
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=402.68 Aligned_cols=370 Identities=20% Similarity=0.282 Sum_probs=293.5
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|+++||.++|++++.++ |+.. ||-||..+||+++.|+||++.|+|| +|||+||+||+|+.|+..
T Consensus 19 ktFe~~gLD~RllkAi~~l----G~ek-pTlIQs~aIplaLEgKDvvarArTG---------SGKT~AYliPllqkll~~ 84 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKL----GWEK-PTLIQSSAIPLALEGKDVVARARTG---------SGKTAAYLIPLLQKLLAE 84 (569)
T ss_pred ccHHHhCCCHHHHHHHHHh----CcCC-cchhhhcccchhhcCcceeeeeccC---------CCchHHHHHHHHHHHHHh
Confidence 6899999999999999986 8875 9999999999999999999999999 899999999999999976
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
... + . -.| .|.++||+||||||.||.+.+.+|...-. ...|+...-...
T Consensus 85 k~t----~---------~----------~e~---~~sa~iLvPTkEL~qQvy~viekL~~~c~-----k~lr~~nl~s~~ 133 (569)
T KOG0346|consen 85 KKT----N---------D----------GEQ---GPSAVILVPTKELAQQVYKVIEKLVEYCS-----KDLRAINLASSM 133 (569)
T ss_pred hhc----c---------c----------ccc---cceeEEEechHHHHHHHHHHHHHHHHHHH-----Hhhhhhhhhccc
Confidence 321 0 0 013 48999999999999999999999853211 122443322211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.+ ..++.. +. ..+|||||||++|..++..
T Consensus 134 sd---------------------------------------------sv~~~~---L~--d~pdIvV~TP~~ll~~~~~- 162 (569)
T KOG0346|consen 134 SD---------------------------------------------SVNSVA---LM--DLPDIVVATPAKLLRHLAA- 162 (569)
T ss_pred ch---------------------------------------------HHHHHH---Hc--cCCCeEEeChHHHHHHHhh-
Confidence 11 112212 22 5799999999999999873
Q ss_pred hcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
+-...|.++++||+||||-|| .+.-+.+..|..|| |.. =|++|.|||++.
T Consensus 163 -----~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L---Pr~---------------------~Q~~LmSATl~d 213 (569)
T KOG0346|consen 163 -----GVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL---PRI---------------------YQCFLMSATLSD 213 (569)
T ss_pred -----ccchhhhheeeEEechhhhhhhcccHHHHHHHHHhC---Cch---------------------hhheeehhhhhh
Confidence 122578999999999999999 66667888888886 542 599999999999
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecch
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSY 628 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy 628 (754)
+|.+|-.-+|+||. .+++... .+. ...++.|.+..+.. ..||.... +|-+| +-..+++||||++-
T Consensus 214 Dv~~LKkL~l~nPv-iLkl~e~---el~-~~dqL~Qy~v~cse-------~DKfllly--allKL-~LI~gKsliFVNtI 278 (569)
T KOG0346|consen 214 DVQALKKLFLHNPV-ILKLTEG---ELP-NPDQLTQYQVKCSE-------EDKFLLLY--ALLKL-RLIRGKSLIFVNTI 278 (569)
T ss_pred HHHHHHHHhccCCe-EEEeccc---cCC-CcccceEEEEEecc-------chhHHHHH--HHHHH-HHhcCceEEEEech
Confidence 99999999999963 4565432 111 34678898877652 23554211 22122 23569999999999
Q ss_pred hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc-------------------------------
Q 004428 629 FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER------------------------------- 677 (754)
Q Consensus 629 ~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr------------------------------- 677 (754)
..+-||+-+|..-||..|.+++.+.+..|.-.+++|..|-..|+||||.
T Consensus 279 dr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D 358 (569)
T KOG0346|consen 279 DRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLD 358 (569)
T ss_pred hhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccC
Confidence 9999999999999999999999999999999999999999999999991
Q ss_pred --ccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHH---HHHHHhCchH
Q 004428 678 --SHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDML---RLERIVGSAH 739 (754)
Q Consensus 678 --ahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~---~LErIVGt~r 739 (754)
+.--||+|+..|.+|||||+|.++.-|+||+|||+|+. .|++.+|+++.+.. .||.+.-..+
T Consensus 359 ~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~ 426 (569)
T KOG0346|consen 359 KESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDEN 426 (569)
T ss_pred chhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHH
Confidence 11239999999999999999999999999999999987 69999999988765 6666665543
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=392.36 Aligned_cols=350 Identities=19% Similarity=0.206 Sum_probs=286.8
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
...|..+||..+++++|.+. ||+. |||||++.||+++.++||++.++|| +|||+||+||++.++..
T Consensus 20 ~g~fqsmgL~~~v~raI~kk----g~~~-ptpiqRKTipliLe~~dvv~martg---------sgktaaf~ipm~e~Lk~ 85 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK----GFNT-PTPIQRKTIPLILEGRDVVGMARTG---------SGKTAAFLIPMIEKLKS 85 (529)
T ss_pred CCCccccCCCHHHHHHHHHh----hcCC-CCchhcccccceeeccccceeeecC---------CcchhhHHHHHHHHHhh
Confidence 45699999999999999874 8875 9999999999999999999999998 89999999999999953
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. .| +..|+|||.||||||.|..+.+..++..+. .|-...||+
T Consensus 86 ~-----------------------------s~--~g~RalilsptreLa~qtlkvvkdlgrgt~-------lr~s~~~gg 127 (529)
T KOG0337|consen 86 H-----------------------------SQ--TGLRALILSPTRELALQTLKVVKDLGRGTK-------LRQSLLVGG 127 (529)
T ss_pred c-----------------------------cc--cccceeeccCcHHHHHHHHHHHHHhccccc-------hhhhhhccc
Confidence 2 12 356899999999999999999999987653 344456665
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
+.. .. +..+.. .++||||||||||..+.-+
T Consensus 128 D~~-----------------------------------------------ee-qf~~l~--~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 128 DSI-----------------------------------------------EE-QFILLN--ENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred chH-----------------------------------------------HH-HHHHhc--cCCCEEEecCceeeeeehh
Confidence 522 22 222222 4799999999999876531
Q ss_pred hhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
-. .-|+|||++|.||||+|+ |++-+.+..|+.. +|.. |||++||||+|
T Consensus 158 ------m~-l~l~sveyVVfdEadrlfemgfqeql~e~l~r---l~~~---------------------~QTllfSatlp 206 (529)
T KOG0337|consen 158 ------MT-LTLSSVEYVVFDEADRLFEMGFQEQLHEILSR---LPES---------------------RQTLLFSATLP 206 (529)
T ss_pred ------ee-ccccceeeeeehhhhHHHhhhhHHHHHHHHHh---CCCc---------------------ceEEEEeccCc
Confidence 23 459999999999999999 6655677777655 4664 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+-..++.-+.++ .-|++..+ +++...++..|.++.. +.|..+++. ++-.. -...+|+|||++
T Consensus 207 ~~lv~fakaGl~~p-~lVRldve-----tkise~lk~~f~~~~~-------a~K~aaLl~-il~~~--~~~~~t~vf~~t 270 (529)
T KOG0337|consen 207 RDLVDFAKAGLVPP-VLVRLDVE-----TKISELLKVRFFRVRK-------AEKEAALLS-ILGGR--IKDKQTIVFVAT 270 (529)
T ss_pred hhhHHHHHccCCCC-ceEEeehh-----hhcchhhhhheeeecc-------HHHHHHHHH-HHhcc--ccccceeEEecc
Confidence 99888888777764 46776544 2466778888888764 345443332 22111 125689999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
+..+.-++..|+..|+....|.+.++|..|......|..|+..+||.||+|+ ||+||++..+||||++|..+..|+||
T Consensus 271 k~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaa--RG~diplldnvinyd~p~~~klFvhR 348 (529)
T KOG0337|consen 271 KHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAA--RGLDIPLLDNVINYDFPPDDKLFVHR 348 (529)
T ss_pred cchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhh--ccCCCccccccccccCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDML 729 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~ 729 (754)
+||++|++ .|++++|+...|..
T Consensus 349 Vgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 349 VGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred ecchhhccccceEEEEEecccch
Confidence 99999998 78999999877753
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=378.06 Aligned_cols=354 Identities=15% Similarity=0.184 Sum_probs=274.9
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|.+++|++.+.++|... |+.. |||+|.++||.+++++|++.+++|| +|||.+|+|++++++..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~----~~~~-~~~~Q~~ai~~i~~~~d~ii~apTG---------sGKT~~~~l~~l~~~~~ 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSY----GFEK-PSAIQQRGIKPILDGYDTIGQAQSG---------TGKTATFVIAALQLIDY 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHhcC
Confidence 57799999999999999774 7775 8999999999999999999999998 89999999999998842
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...+++|||+|||+||.|+.+.+..++.... .+....+|+
T Consensus 93 ~--------------------------------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-------~~~~~~~g~ 133 (401)
T PTZ00424 93 D--------------------------------LNACQALILAPTRELAQQIQKVVLALGDYLK-------VRCHACVGG 133 (401)
T ss_pred C--------------------------------CCCceEEEECCCHHHHHHHHHHHHHHhhhcC-------ceEEEEECC
Confidence 2 1246899999999999999999988764321 011112222
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ... ..+.... .+++|||+||++|..++..
T Consensus 134 ~-----------------------------------------------~~~-~~~~~~~--~~~~Ivv~Tp~~l~~~l~~ 163 (401)
T PTZ00424 134 T-----------------------------------------------VVR-DDINKLK--AGVHMVVGTPGRVYDMIDK 163 (401)
T ss_pred c-----------------------------------------------CHH-HHHHHHc--CCCCEEEECcHHHHHHHHh
Confidence 1 111 1111111 3579999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+.|.++||||||.++...| ..+..++. .+|. ..|+++||||++
T Consensus 164 -------~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~---~~~~---------------------~~~~i~~SAT~~ 212 (401)
T PTZ00424 164 -------RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFK---KLPP---------------------DVQVALFSATMP 212 (401)
T ss_pred -------CCcccccccEEEEecHHHHHhcchHHHHHHHHh---hCCC---------------------CcEEEEEEecCC
Confidence 345699999999999999986444 34444443 3343 269999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
..+..+...++.++ ..+.+.... .....+.|.+..++.. +.+.. .+...+......++||||++
T Consensus 213 ~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~----~l~~~~~~~~~~~~ivF~~t 276 (401)
T PTZ00424 213 NEILELTTKFMRDP-KRILVKKDE-----LTLEGIRQFYVAVEKE------EWKFD----TLCDLYETLTITQAIIYCNT 276 (401)
T ss_pred HHHHHHHHHHcCCC-EEEEeCCCC-----cccCCceEEEEecChH------HHHHH----HHHHHHHhcCCCeEEEEecC
Confidence 99999998888774 233332211 1234577776655421 11221 22222233345789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..+.+.|+..++.+..+|+.+++.+|.++.+.|++|+++|||+|+.+. ||+||++|++||+|++|.++..|.||
T Consensus 277 ~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~--~GiDip~v~~VI~~~~p~s~~~y~qr 354 (401)
T PTZ00424 277 RRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLA--RGIDVQQVSLVINYDLPASPENYIHR 354 (401)
T ss_pred cHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccccc--CCcCcccCCEEEEECCCCCHHHEeec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
+||+||.+ .|.|++|+++.|...+.++
T Consensus 355 ~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 355 IGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred ccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 99999987 7999999999887666544
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=372.92 Aligned_cols=353 Identities=17% Similarity=0.233 Sum_probs=292.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|.+++|++.|+..+... ||.. ||.||+.+|++|..|.|+...+++| ||||.||++++|+|+
T Consensus 23 evvdsfddm~L~e~LLrgiy~y----GFek-PSaIQqraI~p~i~G~dv~~qaqsg---------TgKt~af~i~iLq~i 88 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAY----GFEK-PSAIQQRAILPCIKGHDVIAQAQSG---------TGKTAAFLISILQQI 88 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhh----ccCC-chHHHhccccccccCCceeEeeecc---------ccchhhhHHHHHhhc
Confidence 3456899999999999999886 8876 9999999999999999999999998 999999999999999
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
.-. + .-++||||+||||||.|+.+....+..... + +.-..-
T Consensus 89 D~~------------------------------~--ke~qalilaPtreLa~qi~~v~~~lg~~~~---~----~v~~~i 129 (397)
T KOG0327|consen 89 DMS------------------------------V--KETQALILAPTRELAQQIQKVVRALGDHMD---V----SVHACI 129 (397)
T ss_pred Ccc------------------------------h--HHHHHHHhcchHHHHHHHHHHHHhhhcccc---e----eeeeec
Confidence 322 0 236799999999999999999888876542 1 111112
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
| |..+-++-.++-. ..+.|+|+||||+.+.|
T Consensus 130 g-----------------------------------------------g~~~~~~~~~i~~--~~~hivvGTpgrV~dml 160 (397)
T KOG0327|consen 130 G-----------------------------------------------GTNVRREDQALLK--DKPHIVVGTPGRVFDML 160 (397)
T ss_pred C-----------------------------------------------cccchhhhhhhhc--cCceeecCCchhHHHhh
Confidence 2 1223322222221 35899999999999999
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
. +..++..-|+++|+||||.|| -++-+.+..|+.++ |.+ =|+++||||
T Consensus 161 ~-------~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~l---p~~---------------------vQv~l~SAT 209 (397)
T KOG0327|consen 161 N-------RGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQEL---PSD---------------------VQVVLLSAT 209 (397)
T ss_pred c-------cccccccceeEEeecchHhhhccchHHHHHHHHHHc---Ccc---------------------hhheeeccc
Confidence 7 357788899999999999999 56668888888886 553 399999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEe
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFL 625 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv 625 (754)
+++++..+.+++++++ ..|.++.. + .....|+|.|.++.... ++. .|-.|.+ ...+.+|||
T Consensus 210 ~p~~vl~vt~~f~~~p-v~i~vkk~--~---ltl~gikq~~i~v~k~~-------k~~-----~l~dl~~-~~~q~~if~ 270 (397)
T KOG0327|consen 210 MPSDVLEVTKKFMREP-VRILVKKD--E---LTLEGIKQFYINVEKEE-------KLD-----TLCDLYR-RVTQAVIFC 270 (397)
T ss_pred CcHHHHHHHHHhccCc-eEEEecch--h---hhhhheeeeeeeccccc-------ccc-----HHHHHHH-hhhcceEEe
Confidence 9999999999999996 34544432 2 34678999999987543 332 3334444 678999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
++......|...|...++...+||+.+.|.+|...+..|+.|..+|||.||+++ ||+||..+..||||++|.+.+-|.
T Consensus 271 nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~a--rgidv~~~slvinydlP~~~~~yi 348 (397)
T KOG0327|consen 271 NTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLA--RGIDVQQVSLVVNYDLPARKENYI 348 (397)
T ss_pred cchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccc--cccchhhcceeeeeccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhcHHHHHH
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFDMLRLER 733 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D~~~LEr 733 (754)
||+||+||-| +|.++++++..|...|-+
T Consensus 349 hR~gr~gr~grkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 349 HRIGRAGRFGRKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred hhcccccccCCCceeeeeehHhhHHHHHh
Confidence 9999999988 799999999888765533
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=372.94 Aligned_cols=386 Identities=15% Similarity=0.187 Sum_probs=267.8
Q ss_pred cCCCCCCHHH------HHHHHHHhhhCCCCCCCCHHHHHHhhhhh---------CCccEEEecCCCCccCCCCCCchhHH
Q 004428 232 YSDYGLKPKL------YKHWLDIYNKSGGNDFHSSKQRSFFSLCN---------SYRDILHSNKKPFYLKGQEEDSNIME 296 (754)
Q Consensus 232 f~~l~L~~~L------~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~---------~y~Dvl~~a~Tg~~~~g~~~~tgkt~ 296 (754)
|+.++++..+ .+.+..+.++.+.... -|+|.+++|.++ ..+||++.|.|| +|||.
T Consensus 129 ~s~l~~se~k~~~d~lea~~~q~l~k~~is~~-FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTG---------SGKTL 198 (620)
T KOG0350|consen 129 FSVLGKSEMKNLEDTLEATIDQLLVKMAISRL-FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTG---------SGKTL 198 (620)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHhhcccc-cchHHHHHHHHHHhhcCCCCCCCCceEEecCCC---------CCcee
Confidence 5555555442 2233333444565553 489999999883 378999999998 89999
Q ss_pred HHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccc
Q 004428 297 TYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNV 376 (754)
Q Consensus 297 ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v 376 (754)
+|+|||++-|.+.. -.|-++|||||||+||.||+++|..++..+. +.|
T Consensus 199 aY~iPIVQ~L~~R~-------------------------------v~~LRavVivPtr~L~~QV~~~f~~~~~~tg-L~V 246 (620)
T KOG0350|consen 199 AYVIPIVQLLSSRP-------------------------------VKRLRAVVIVPTRELALQVYDTFKRLNSGTG-LAV 246 (620)
T ss_pred eehhHHHHHHccCC-------------------------------ccceEEEEEeeHHHHHHHHHHHHHHhccCCc-eEE
Confidence 99999999886431 1357899999999999999999999987664 112
Q ss_pred ccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhccc--CCCCE
Q 004428 377 EHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDF--YTSDM 454 (754)
Q Consensus 377 ~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~F--y~sDI 454 (754)
. .--|.. ++..-+-+|-+.. ...||
T Consensus 247 ~------~~sgq~-----------------------------------------------sl~~E~~qL~~~~~~~~~DI 273 (620)
T KOG0350|consen 247 C------SLSGQN-----------------------------------------------SLEDEARQLASDPPECRIDI 273 (620)
T ss_pred E------eccccc-----------------------------------------------chHHHHHHHhcCCCccccce
Confidence 1 111111 1111122222221 24699
Q ss_pred EEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh---hcCchHHHHHHHHhccC-----CCCCCCCchhhhhh
Q 004428 455 IVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL---MQNWSWLIEVVEQLNRI-----PSKQHGTDVMRIRQ 526 (754)
Q Consensus 455 IVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL---mQNw~hv~~Il~~Ln~~-----Pk~~h~~DfsRvR~ 526 (754)
||||||||.++|.++ ..++ |+++.+|||||||||| .|+| +.+|+.++... |...-..+++-...
T Consensus 274 lVaTPGRLVDHl~~~-----k~f~-Lk~LrfLVIDEADRll~qsfQ~W--l~~v~~~~~~~k~~~~~~nii~~~~~~~pt 345 (620)
T KOG0350|consen 274 LVATPGRLVDHLNNT-----KSFD-LKHLRFLVIDEADRLLDQSFQEW--LDTVMSLCKTMKRVACLDNIIRQRQAPQPT 345 (620)
T ss_pred EEcCchHHHHhccCC-----CCcc-hhhceEEEechHHHHHHHHHHHH--HHHHHHHhCCchhhcChhhhhhhcccCCch
Confidence 999999999999852 3454 9999999999999998 4777 55666665433 22211112211111
Q ss_pred hh---cccCCCcc--ccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHH
Q 004428 527 WY---LDGYSRFY--RQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDAR 601 (754)
Q Consensus 527 w~---L~~~ak~~--RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~R 601 (754)
.+ +.+..+.| -|-|+||||++..-+.|..--+++++- ..+..+-.|.. .+...+.+...-.+. +
T Consensus 346 ~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl-~~v~~~~~~ry-slp~~l~~~~vv~~~---------~ 414 (620)
T KOG0350|consen 346 VLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRL-FHVSKPLIGRY-SLPSSLSHRLVVTEP---------K 414 (620)
T ss_pred hhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCce-EEeecccceee-ecChhhhhceeeccc---------c
Confidence 11 22222222 368999999998877777655566531 11211111211 233344444443321 1
Q ss_pred HHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 004428 602 LEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLK----SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTER 677 (754)
Q Consensus 602 f~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk----~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEr 677 (754)
++-..+...|......++|+|++|-....||...|+ +-++++....+..+++.|.+.++.|..|.++||||||.
T Consensus 415 --~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~ 492 (620)
T KOG0350|consen 415 --FKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDA 492 (620)
T ss_pred --cchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhh
Confidence 122234445556678999999999999999999988 44777777899999999999999999999999999999
Q ss_pred ccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 678 SHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 678 ahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
.+ ||+||.+|.+|||||+|.+...|+||+|||+||| .|.|++|.++.+...+-+++
T Consensus 493 la--RGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL 549 (620)
T KOG0350|consen 493 LA--RGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLL 549 (620)
T ss_pred hh--cCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHH
Confidence 99 9999999999999999999999999999999999 79999999988876554444
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=377.36 Aligned_cols=372 Identities=16% Similarity=0.218 Sum_probs=286.8
Q ss_pred CCCcccCCCCCCcCC----CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhH
Q 004428 220 GTGECFLKDDNLYSD----YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIM 295 (754)
Q Consensus 220 ~~~~~~~~~~~~f~~----l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt 295 (754)
..|..+|.++.+|.+ +..+++|+.++..+ +|.. |||+|.+++|.++.|+|||+|+.|| +|+|
T Consensus 122 v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~----~F~~-Pt~iq~~aipvfl~~r~~lAcapTG---------sgKt 187 (593)
T KOG0344|consen 122 VDGFHLPPPLLSFSDLTYDYSMNKRLLENLQEL----GFDE-PTPIQKQAIPVFLEKRDVLACAPTG---------SGKT 187 (593)
T ss_pred ccCCCCCCccccccccchhhhhcHHHHHhHhhC----CCCC-CCcccchhhhhhhcccceEEeccCC---------Ccch
Confidence 346778888888886 77889998888875 7875 9999999999999999999999998 8899
Q ss_pred HHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhC--Ccccc
Q 004428 296 ETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLT--PDAHK 373 (754)
Q Consensus 296 ~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~--~~~~~ 373 (754)
.||++|+|+||..... . .+-+.-+++||.|||+||.|+...+.++. +.+.
T Consensus 188 laf~~Pil~~L~~~~~--~-------------------------~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~- 239 (593)
T KOG0344|consen 188 LAFNLPILQHLKDLSQ--E-------------------------KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS- 239 (593)
T ss_pred hhhhhHHHHHHHHhhc--c-------------------------cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc-
Confidence 9999999999976521 1 12234579999999999999999999997 3321
Q ss_pred cccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCC
Q 004428 374 VNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSD 453 (754)
Q Consensus 374 ~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sD 453 (754)
.| ...|. +...|. ++ .+..+. ..+|
T Consensus 240 ------~~-a~~~~-------------------------~~~~~~--------------------qk--~a~~~~-~k~d 264 (593)
T KOG0344|consen 240 ------LR-AAQFS-------------------------KPAYPS--------------------QK--PAFLSD-EKYD 264 (593)
T ss_pred ------hh-hhhcc-------------------------cccchh--------------------hc--cchhHH-HHHH
Confidence 00 11111 111110 00 011111 3589
Q ss_pred EEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc-C-chHHHHHHHHhccCCCCCCCCchhhhhhhhccc
Q 004428 454 MIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ-N-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531 (754)
Q Consensus 454 IIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ-N-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~ 531 (754)
|+|.||.||..+++. ..-.+-|++|+.||+||||+++.. + .+.+.+|+..+-. |.
T Consensus 265 ili~TP~ri~~~~~~-----~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-~~----------------- 321 (593)
T KOG0344|consen 265 ILISTPMRIVGLLGL-----GKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-PD----------------- 321 (593)
T ss_pred HHhcCHHHHHHHhcC-----CCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-cc-----------------
Confidence 999999999999983 122245999999999999999966 3 3667777776643 22
Q ss_pred CCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhH
Q 004428 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFP 611 (754)
Q Consensus 532 ~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp 611 (754)
=-.-+||||++..+..++.....+. +.|-|... +.....|.|-+..+-.. .-++- .+.
T Consensus 322 -----i~~a~FSat~~~~VEE~~~~i~~~~-~~vivg~~-----~sa~~~V~QelvF~gse------~~K~l-----A~r 379 (593)
T KOG0344|consen 322 -----IRVALFSATISVYVEEWAELIKSDL-KRVIVGLR-----NSANETVDQELVFCGSE------KGKLL-----ALR 379 (593)
T ss_pred -----hhhhhhhccccHHHHHHHHHhhccc-eeEEEecc-----hhHhhhhhhhheeeecc------hhHHH-----HHH
Confidence 1235799999999999998877774 34433211 22355677777665322 22332 122
Q ss_pred Hh-hhcCCCcEEEEecchhcHHHHHHHH-HhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 612 KI-KDSIQGGIMLFLSSYFEFVRLRNFL-KSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 612 ~l-~~~~~~~tLIFv~Sy~d~vrlrn~L-k~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
++ ...-..++||||.||..+..|-.-| .-.++.+..||+..+|.+|..++.+|+.|++-||+|||+.+ ||+|++||
T Consensus 380 q~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~--RGiDf~gv 457 (593)
T KOG0344|consen 380 QLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLA--RGIDFKGV 457 (593)
T ss_pred HHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhh--ccccccCc
Confidence 23 3334689999999999999999999 88999999999999999999999999999999999999999 99999999
Q ss_pred CeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 690 QNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 690 ~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
+.|||||+|....-|+||||||||++ .|.|+++|+..|...|--|+
T Consensus 458 n~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 458 NLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred ceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHH
Confidence 99999999999999999999999998 69999999999987774444
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=377.41 Aligned_cols=356 Identities=12% Similarity=0.141 Sum_probs=284.7
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHH
Q 004428 226 LKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNH 305 (754)
Q Consensus 226 ~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNH 305 (754)
+.....|..+-|-..++..|... +|. .|||||.++||.++.+-|+++.++.| ||||.+|.+-++.-
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn----~f~-~ptkiQaaAIP~~~~kmDliVQaKSG---------TGKTlVfsv~av~s 86 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRN----AFA-LPTKIQAAAIPAIFSKMDLIVQAKSG---------TGKTLVFSVLAVES 86 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhh----ccc-CCCchhhhhhhhhhcccceEEEecCC---------CCceEEEEeeeehh
Confidence 33456688887777777777653 675 59999999999999999999999988 99999999988877
Q ss_pred HhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccc
Q 004428 306 IFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDE 385 (754)
Q Consensus 306 v~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~e 385 (754)
+.-. -..|+.|||+||||+|.||-+++.++++..... |
T Consensus 87 l~~~--------------------------------~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~------~---- 124 (980)
T KOG4284|consen 87 LDSR--------------------------------SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA------R---- 124 (980)
T ss_pred cCcc--------------------------------cCcceeEEEecchhhhhHHHHHHHHhcccccCc------c----
Confidence 6321 135889999999999999999999998743110 1
Q ss_pred cCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHH
Q 004428 386 FGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQK 465 (754)
Q Consensus 386 fg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~l 465 (754)
..+|-| |.......++| ..+.|||+|||||..+
T Consensus 125 -----------------------------------csvfIG--------GT~~~~d~~rl----k~~rIvIGtPGRi~qL 157 (980)
T KOG4284|consen 125 -----------------------------------CSVFIG--------GTAHKLDLIRL----KQTRIVIGTPGRIAQL 157 (980)
T ss_pred -----------------------------------eEEEec--------Cchhhhhhhhh----hhceEEecCchHHHHH
Confidence 123434 33333333333 3689999999999999
Q ss_pred HhhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 466 MTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 466 I~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
++. ++-..|+|.++||||||.|+. .-+ -.+|-.++|.+|+. ||.+.|||
T Consensus 158 ~el-------~~~n~s~vrlfVLDEADkL~~t~sf--q~~In~ii~slP~~---------------------rQv~a~SA 207 (980)
T KOG4284|consen 158 VEL-------GAMNMSHVRLFVLDEADKLMDTESF--QDDINIIINSLPQI---------------------RQVAAFSA 207 (980)
T ss_pred HHh-------cCCCccceeEEEeccHHhhhchhhH--HHHHHHHHHhcchh---------------------heeeEEec
Confidence 983 666799999999999999874 333 34555667778985 99999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIML 623 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLI 623 (754)
|.|..+..++.++|+.+. -|++...- .++..|+|.+.-+... ......-|++ ...|.++.. -...++||
T Consensus 208 TYp~nLdn~Lsk~mrdp~-lVr~n~~d-----~~L~GikQyv~~~~s~-nnsveemrlk---lq~L~~vf~~ipy~QAlV 277 (980)
T KOG4284|consen 208 TYPRNLDNLLSKFMRDPA-LVRFNADD-----VQLFGIKQYVVAKCSP-NNSVEEMRLK---LQKLTHVFKSIPYVQALV 277 (980)
T ss_pred cCchhHHHHHHHHhcccc-eeecccCC-----ceeechhheeeeccCC-cchHHHHHHH---HHHHHHHHhhCchHHHHh
Confidence 999999999999999964 66664331 2456799988766533 2233344433 234444433 35689999
Q ss_pred EecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc
Q 004428 624 FLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF 703 (754)
Q Consensus 624 Fv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef 703 (754)
||++-..+.-+++||+..|+.+..|+|-|+|++|.-|....++-+++|||+||..+ ||+|-+.|..|||.|+|.+-+.
T Consensus 278 F~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLta--RGIDa~~vNLVVNiD~p~d~eT 355 (980)
T KOG4284|consen 278 FCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTA--RGIDADNVNLVVNIDAPADEET 355 (980)
T ss_pred hhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhh--ccCCccccceEEecCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhhccccCCCC-CceEEEEechh
Q 004428 704 YPEIVNMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 704 Y~erigrt~ra~-~g~~~~L~sk~ 726 (754)
|.|||||.||-| .|.+++|++..
T Consensus 356 Y~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 356 YFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred HHHHhhhcccccccceeEEEeccc
Confidence 999999999988 68888887644
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=354.66 Aligned_cols=351 Identities=17% Similarity=0.245 Sum_probs=281.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhC--CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNS--YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~--y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
..+|.+|+|+|.|++.+..+ +|.. ||.||..++|+|+. -+.+++.+++| ||||+||+|-+|.+|
T Consensus 89 ~ksFeeL~LkPellkgly~M----~F~k-PskIQe~aLPlll~~Pp~nlIaQsqsG---------tGKTaaFvL~MLsrv 154 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAM----KFQK-PSKIQETALPLLLAEPPQNLIAQSQSG---------TGKTAAFVLTMLSRV 154 (477)
T ss_pred cccHHhhCCCHHHHhHHHHh----ccCC-cchHHHhhcchhhcCCchhhhhhhcCC---------CchhHHHHHHHHHhc
Confidence 67899999999999999887 7764 99999999999976 67999999987 999999999999988
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
--+ ..-|++|-|+||||||.|+.+.+.+.+.... + ...|
T Consensus 155 d~~--------------------------------~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~-i--------ta~y 193 (477)
T KOG0332|consen 155 DPD--------------------------------VVVPQCICLAPTRELAPQTGEVVEEMGKFTE-L--------TASY 193 (477)
T ss_pred Ccc--------------------------------ccCCCceeeCchHHHHHHHHHHHHHhcCcee-e--------eEEE
Confidence 432 1359999999999999999999999876541 1 1223
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
.-. |+ ++.|. .|-...|||+|||-+++++
T Consensus 194 air------------------------------------~s---------k~~rG------~~i~eqIviGTPGtv~Dlm 222 (477)
T KOG0332|consen 194 AIR------------------------------------GS---------KAKRG------NKLTEQIVIGTPGTVLDLM 222 (477)
T ss_pred Eec------------------------------------Cc---------ccccC------CcchhheeeCCCccHHHHH
Confidence 211 10 11111 1134799999999999998
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhh-hcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
-. -....+..|.++|+||||.|+ -|.+ ++-..|+ +.+|.. -|.|+|||
T Consensus 223 ~k------lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~---~~lP~~---------------------~QllLFSA 272 (477)
T KOG0332|consen 223 LK------LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIM---RSLPRN---------------------QQLLLFSA 272 (477)
T ss_pred HH------HHhhChhhceEEEecchhhhhhcccccccchhhh---hhcCCc---------------------ceEEeeec
Confidence 62 133459999999999999999 3433 4444444 556754 69999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|+...+..++.+...|. -.+.++... ..+..|+|.|..+.+. +.+|+..++ |.-. -..+++|||
T Consensus 273 Tf~e~V~~Fa~kivpn~-n~i~Lk~ee-----l~L~~IkQlyv~C~~~------~~K~~~l~~-lyg~---~tigqsiIF 336 (477)
T KOG0332|consen 273 TFVEKVAAFALKIVPNA-NVIILKREE-----LALDNIKQLYVLCACR------DDKYQALVN-LYGL---LTIGQSIIF 336 (477)
T ss_pred hhHHHHHHHHHHhcCCC-ceeeeehhh-----ccccchhhheeeccch------hhHHHHHHH-HHhh---hhhhheEEE
Confidence 99999999999999985 466666541 2467899999886653 557764443 3222 246899999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC-----
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE----- 699 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~----- 699 (754)
|.++..+..|...|...|..+..+||.++-.+|.+....|+.|+-+|||+|++.+ ||+|+.-|+.|||||||.
T Consensus 337 c~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A--RGiDv~qVs~VvNydlP~~~~~~ 414 (477)
T KOG0332|consen 337 CHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA--RGIDVAQVSVVVNYDLPVKYTGE 414 (477)
T ss_pred EeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh--cccccceEEEEEecCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999996
Q ss_pred -CCCchhhhccccCCCC-CceEEEEec-hhcHHHHHH
Q 004428 700 -RKEFYPEIVNMLEGSH-NMTCTVLFS-RFDMLRLER 733 (754)
Q Consensus 700 -~pefY~erigrt~ra~-~g~~~~L~s-k~D~~~LEr 733 (754)
+++.|.||||||||-| .|.++.|+. +++...|++
T Consensus 415 pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~ 451 (477)
T KOG0332|consen 415 PDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNK 451 (477)
T ss_pred CCHHHHHHHhcccccccccceEEEeecccCcHHHHHH
Confidence 5788999999999998 799999884 455444433
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=376.55 Aligned_cols=354 Identities=13% Similarity=0.081 Sum_probs=251.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCcccc
Q 004428 236 GLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTK 315 (754)
Q Consensus 236 ~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~k 315 (754)
.|++.|.++|.+. |+.. |||+|+++||.+++|+||+++++|| +|||.||+||+|+++.+.
T Consensus 20 ~l~~~l~~~L~~~----g~~~-p~~~Q~~ai~~il~G~nvvv~apTG---------SGKTla~~LPiL~~l~~~------ 79 (742)
T TIGR03817 20 WAHPDVVAALEAA----GIHR-PWQHQARAAELAHAGRHVVVATGTA---------SGKSLAYQLPVLSALADD------ 79 (742)
T ss_pred cCCHHHHHHHHHc----CCCc-CCHHHHHHHHHHHCCCCEEEECCCC---------CcHHHHHHHHHHHHHhhC------
Confidence 3788999998774 8876 8999999999999999999999998 899999999999999642
Q ss_pred chhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCc
Q 004428 316 NDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDK 395 (754)
Q Consensus 316 nn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~ 395 (754)
..+++|||+|||+||.|+...+.+++.. . + +. ..|+|.
T Consensus 80 ---------------------------~~~~aL~l~PtraLa~q~~~~l~~l~~~-~-i------~v-~~~~Gd------ 117 (742)
T TIGR03817 80 ---------------------------PRATALYLAPTKALAADQLRAVRELTLR-G-V------RP-ATYDGD------ 117 (742)
T ss_pred ---------------------------CCcEEEEEcChHHHHHHHHHHHHHhccC-C-e------EE-EEEeCC------
Confidence 1378999999999999999999998621 1 1 11 223322
Q ss_pred ccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccccc
Q 004428 396 DDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ 475 (754)
Q Consensus 396 ~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~r 475 (754)
.. .-+|+.++ .+++|||+||..|...+-.. ..+
T Consensus 118 --------------------------------t~-------~~~r~~i~-----~~~~IivtTPd~L~~~~L~~---~~~ 150 (742)
T TIGR03817 118 --------------------------------TP-------TEERRWAR-----EHARYVLTNPDMLHRGILPS---HAR 150 (742)
T ss_pred --------------------------------CC-------HHHHHHHh-----cCCCEEEEChHHHHHhhccc---hhH
Confidence 10 00222232 35899999999987533210 111
Q ss_pred CcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHH
Q 004428 476 DVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 476 d~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~ 555 (754)
...||+.+++|||||||.|+..+-.|+..++..|..+ ... ...-+|+|+||||++.... ++.
T Consensus 151 ~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri------------~~~-----~g~~~q~i~~SATi~n~~~-~~~ 212 (742)
T TIGR03817 151 WARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRL------------CAR-----YGASPVFVLASATTADPAA-AAS 212 (742)
T ss_pred HHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHH------------HHh-----cCCCCEEEEEecCCCCHHH-HHH
Confidence 2346999999999999999854456777777665321 111 0113899999999997654 566
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEec---cCc----c--cchhHHHHHHHHHHHhHHhhhcCCCcEEEEec
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFN---ADS----I--AKADDARLEYFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~---~~s----~--~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
.++.++ +.+... .+. ........+.... ... . ......+. .+|..+... ..++||||+
T Consensus 213 ~l~g~~---~~~i~~-~~~---~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~-----~~l~~l~~~-~~~~IVF~~ 279 (742)
T TIGR03817 213 RLIGAP---VVAVTE-DGS---PRGARTVALWEPPLTELTGENGAPVRRSASAEAA-----DLLADLVAE-GARTLTFVR 279 (742)
T ss_pred HHcCCC---eEEECC-CCC---CcCceEEEEecCCccccccccccccccchHHHHH-----HHHHHHHHC-CCCEEEEcC
Confidence 665553 222111 111 0111111111100 000 0 00011122 233333332 469999999
Q ss_pred chhcHHHHHHHHHhC--------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCC
Q 004428 627 SYFEFVRLRNFLKSQ--------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLP 698 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~--------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP 698 (754)
|...+..|..+|++. +..+..+|+.++|.+|.++.+.|++|++++||+|+.+. ||+||.+|++||||++|
T Consensus 280 sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~le--rGIDI~~vd~VI~~~~P 357 (742)
T TIGR03817 280 SRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALE--LGVDISGLDAVVIAGFP 357 (742)
T ss_pred CHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHh--ccCCcccccEEEEeCCC
Confidence 999999999998763 56788999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCchhhhccccCCCC-CceEEEEec--hhcHHHH
Q 004428 699 ERKEFYPEIVNMLEGSH-NMTCTVLFS--RFDMLRL 731 (754)
Q Consensus 699 ~~pefY~erigrt~ra~-~g~~~~L~s--k~D~~~L 731 (754)
.++..|.||+||+||.+ .|.|+++.+ ..|...+
T Consensus 358 ~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 358 GTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLV 393 (742)
T ss_pred CCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHH
Confidence 99999999999999988 577887775 4564433
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=322.31 Aligned_cols=330 Identities=14% Similarity=0.119 Sum_probs=233.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
-|+.. ++|+|+++||.+++++|+++.++|| +|||.+|+||+|..
T Consensus 7 ~g~~~-~r~~Q~~ai~~~l~g~dvlv~apTG---------sGKTl~y~lp~l~~-------------------------- 50 (470)
T TIGR00614 7 FGLSS-FRPVQLEVINAVLLGRDCFVVMPTG---------GGKSLCYQLPALCS-------------------------- 50 (470)
T ss_pred cCCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------CcHhHHHHHHHHHc--------------------------
Confidence 37776 8999999999999999999999998 89999999998731
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+.+|||+|||+|+.|.+..+..+.... ..+++...
T Consensus 51 ------------~~~~lVi~P~~~L~~dq~~~l~~~gi~~------------~~l~~~~~-------------------- 86 (470)
T TIGR00614 51 ------------DGITLVISPLISLMEDQVLQLKASGIPA------------TFLNSSQS-------------------- 86 (470)
T ss_pred ------------CCcEEEEecHHHHHHHHHHHHHHcCCcE------------EEEeCCCC--------------------
Confidence 1247999999999999999887653211 01111100
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+ .-.+..++... -...+||++||.+|.....-- .....+..|.++|||||
T Consensus 87 -----~-------------------~~~~~i~~~~~-~~~~~il~~TPe~l~~~~~~~-----~~l~~~~~i~~iViDEa 136 (470)
T TIGR00614 87 -----K-------------------EQQKNVLTDLK-DGKIKLLYVTPEKCSASNRLL-----QTLEERKGITLIAVDEA 136 (470)
T ss_pred -----H-------------------HHHHHHHHHHh-cCCCCEEEECHHHHcCchhHH-----HHHHhcCCcCEEEEeCC
Confidence 0 00000111111 135799999999986422100 01114678999999999
Q ss_pred hhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEE
Q 004428 492 DIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVK 566 (754)
Q Consensus 492 D~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vk 566 (754)
|.|+. |.| +..|-......|. .|.|+||||.++.+...+...+.-....+.
T Consensus 137 H~i~~--~g~~fr~~~~~l~~l~~~~~~----------------------~~~l~lTAT~~~~~~~di~~~l~l~~~~~~ 192 (470)
T TIGR00614 137 HCISQ--WGHDFRPDYKALGSLKQKFPN----------------------VPIMALTATASPSVREDILRQLNLKNPQIF 192 (470)
T ss_pred cccCc--cccccHHHHHHHHHHHHHcCC----------------------CceEEEecCCCHHHHHHHHHHcCCCCCcEE
Confidence 99873 543 2222222222232 689999999999887655444321111221
Q ss_pred EeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCCcEEEEecchhcHHHHHHHHHhCCCce
Q 004428 567 LACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQGGIMLFLSSYFEFVRLRNFLKSQNASF 645 (754)
Q Consensus 567 v~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f 645 (754)
.. . .. .+++ ++.+.... ...+ ..++..+... ....+||||+|..++..|...|++.++++
T Consensus 193 ~~-s----~~--r~nl---~~~v~~~~-----~~~~----~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~ 253 (470)
T TIGR00614 193 CT-S----FD--RPNL---YYEVRRKT-----PKIL----EDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAA 253 (470)
T ss_pred eC-C----CC--CCCc---EEEEEeCC-----ccHH----HHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCe
Confidence 11 0 01 1112 22222111 0111 1244444322 33456999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEec
Q 004428 646 CLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFS 724 (754)
Q Consensus 646 ~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~s 724 (754)
..+|+.+++.+|.++...|+.|+++|||+|+.+. ||+|+++|++||+|++|.+++.|.||+||+||.+ .+.|+++|+
T Consensus 254 ~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~--~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 254 GAYHAGLEISARDDVHHKFQRDEIQVVVATVAFG--MGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred eEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhh--ccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 9999999999999999999999999999999988 9999999999999999999999999999999988 689999999
Q ss_pred hhcHHHHHHHhC
Q 004428 725 RFDMLRLERIVG 736 (754)
Q Consensus 725 k~D~~~LErIVG 736 (754)
..|...+.+++.
T Consensus 332 ~~d~~~~~~~~~ 343 (470)
T TIGR00614 332 PADINRLRRLLM 343 (470)
T ss_pred hhHHHHHHHHHh
Confidence 999888877654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=336.70 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=236.9
Q ss_pred CCCCCCCCHHHHHHhhhhhCCc-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYR-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEG 330 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~ 330 (754)
.||. |||+|++++|.+++|+ |++.+++|| +|||+++++++|.. ..
T Consensus 12 ~G~~--PtpiQ~~~i~~il~G~~~v~~~apTG---------SGKTaa~aafll~~-~~---------------------- 57 (844)
T TIGR02621 12 HGYS--PFPWQLSLAERFVAGQPPESCSTPTG---------LGKTSIIAAWLLAV-EI---------------------- 57 (844)
T ss_pred hCCC--CCHHHHHHHHHHHcCCCcceEecCCC---------CcccHHHHHhhccc-cc----------------------
Confidence 3775 9999999999999999 577789998 89999887776631 10
Q ss_pred cccccccccCCCCCceEEE-EccchhHHHHHHHHHHHhCCcccccc-cc-cccccccccCCCccccCcccchhhhccccc
Q 004428 331 ILIGDAFLDRGFTRPKVLI-LLPLKSIALNVVKRLIRLTPDAHKVN-VE-HIDRFCDEFGTKKEEEDKDDDDASQNIRGT 407 (754)
Q Consensus 331 ~~~~~~~RDQGftRPkVLI-L~PTRelA~qIv~~l~~L~~~~~~~~-v~-nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~ 407 (754)
+-..|++|| ++||||||.|+.+.+.+++....... +. ...++... ...
T Consensus 58 ----------~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~-~~~------------------ 108 (844)
T TIGR02621 58 ----------GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCST-RPE------------------ 108 (844)
T ss_pred ----------cccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-ccc------------------
Confidence 013578888 55999999999999999865321000 00 00111100 000
Q ss_pred ccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcc---------
Q 004428 408 RKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVD--------- 478 (754)
Q Consensus 408 ~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~d--------- 478 (754)
....|.....++||. .+.++...+ . .+++||||| .++|++ ...
T Consensus 109 -----~~~~~l~v~~l~GG~---------~~~~q~~~l-~--~~p~IIVgT----~D~i~s-------r~L~~gYg~~~~ 160 (844)
T TIGR02621 109 -----KKDRPLAISTLRGQF---------ADNDEWMLD-P--HRPAVIVGT----VDMIGS-------RLLFSGYGCGFK 160 (844)
T ss_pred -----cccCCeEEEEEECCC---------ChHHHHHhc-C--CCCcEEEEC----HHHHcC-------Cccccccccccc
Confidence 223455667778873 333333332 2 579999999 477762 222
Q ss_pred -------cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHH
Q 004428 479 -------YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEIN 551 (754)
Q Consensus 479 -------fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pein 551 (754)
+|+.+.+||||||| +.|++.+.+..|+..+...|.. .-||||+||||++.++.
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~rp~~~-------------------rprQtLLFSAT~p~ei~ 220 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQRPPDF-------------------LPLRVVELTATSRTDGP 220 (844)
T ss_pred cccchhhhhccceEEEEehhh-hccccHHHHHHHHHhcccCccc-------------------ccceEEEEecCCCccHH
Confidence 48999999999999 6688888888888865322211 12799999999999999
Q ss_pred HHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcH
Q 004428 552 AFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEF 631 (754)
Q Consensus 552 sL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~ 631 (754)
.+...++.+.. .+.+.... ....++.|. + .... +.++..++..+. .+.....+++||||+|...+
T Consensus 221 ~l~~~~~~~p~-~i~V~~~~-----l~a~ki~q~-v--~v~~-----e~Kl~~lv~~L~-~ll~e~g~~vLVF~NTv~~A 285 (844)
T TIGR02621 221 DRTTLLSAEDY-KHPVLKKR-----LAAKKIVKL-V--PPSD-----EKFLSTMVKELN-LLMKDSGGAILVFCRTVKHV 285 (844)
T ss_pred HHHHHHccCCc-eeeccccc-----ccccceEEE-E--ecCh-----HHHHHHHHHHHH-HHHhhCCCcEEEEECCHHHH
Confidence 88877765532 33332211 123456663 2 2211 223444443332 22233457899999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHH-----HHHHHHhc----CC-------ccEEEEcccccccCccccCCCCeEEEc
Q 004428 632 VRLRNFLKSQNASFCLLGDYTEPSDIS-----RARVWFFE----GK-------RKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 632 vrlrn~Lk~~~~~f~~Ihey~sq~~r~-----rar~~F~~----G~-------~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
.+|.+.|++.++ ..||+.++|.+|. ++++.|++ |. .+|||+|+++. ||+||.. .+||+|
T Consensus 286 q~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae--rGLDId~-d~VI~d 360 (844)
T TIGR02621 286 RKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE--VGVNISA-DHLVCD 360 (844)
T ss_pred HHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh--hcccCCc-ceEEEC
Confidence 999999999887 9999999999999 88999998 54 78999999999 9999987 899999
Q ss_pred cCCCCCCchhhhccccCCCCC--ceEEEEe
Q 004428 696 SLPERKEFYPEIVNMLEGSHN--MTCTVLF 723 (754)
Q Consensus 696 ~lP~~pefY~erigrt~ra~~--g~~~~L~ 723 (754)
..| ++.|+||+||++|.+. +.+++++
T Consensus 361 ~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 361 LAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred CCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 888 5899999999999873 3334444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=351.18 Aligned_cols=329 Identities=14% Similarity=0.122 Sum_probs=228.0
Q ss_pred HHHHHHhhhC-CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhh
Q 004428 243 KHWLDIYNKS-GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVA 321 (754)
Q Consensus 243 ~~~~~~~~~~-g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~ 321 (754)
+.|.+.+++. |+ . |||+|+.++|.++.|+|++++|+|| +||| +|+++++.++..
T Consensus 67 ~~~~~~f~~~~G~-~-pt~iQ~~~i~~il~g~dv~i~ApTG---------sGKT-~f~l~~~~~l~~------------- 121 (1176)
T PRK09401 67 KEFEKFFKKKTGS-K-PWSLQRTWAKRLLLGESFAIIAPTG---------VGKT-TFGLVMSLYLAK------------- 121 (1176)
T ss_pred HHHHHHHHHhcCC-C-CcHHHHHHHHHHHCCCcEEEEcCCC---------CCHH-HHHHHHHHHHHh-------------
Confidence 3444444443 44 4 8999999999999999999999998 8999 477777665521
Q ss_pred hhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhh
Q 004428 322 KNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDAS 401 (754)
Q Consensus 322 ~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~ 401 (754)
+ .+++|||+|||+||.|+++.+.+++.... + +....+|+.
T Consensus 122 ------------------~---g~~alIL~PTreLa~Qi~~~l~~l~~~~~---~----~~~~~~g~~------------ 161 (1176)
T PRK09401 122 ------------------K---GKKSYIIFPTRLLVEQVVEKLEKFGEKVG---C----GVKILYYHS------------ 161 (1176)
T ss_pred ------------------c---CCeEEEEeccHHHHHHHHHHHHHHhhhcC---c----eEEEEEccC------------
Confidence 1 36899999999999999999999975432 0 111122211
Q ss_pred hcccccccCCCCCCCCCCceeeccCCCCCccccccc-ccH-HHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCccc
Q 004428 402 QNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIK-FTR-KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDY 479 (754)
Q Consensus 402 ~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik-~tr-k~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~df 479 (754)
++. -++ ...+.+.. ..+|||||||++|..++. ...
T Consensus 162 ---------------------------------~~~~~ek~~~~~~l~~-~~~~IlV~Tp~rL~~~~~---------~l~ 198 (1176)
T PRK09401 162 ---------------------------------SLKKKEKEEFLERLKE-GDFDILVTTSQFLSKNFD---------ELP 198 (1176)
T ss_pred ---------------------------------CcchhHHHHHHHHHhc-CCCCEEEECHHHHHHHHH---------hcc
Confidence 010 011 11111111 358999999999998875 123
Q ss_pred CCceeEEEEecchhhh------------hcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhc--ccCCCccccEEEEcC
Q 004428 480 LSSIEVLIIDHADIIL------------MQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYL--DGYSRFYRQTVLLSY 544 (754)
Q Consensus 480 LSSIEiLVlDeAD~mL------------mQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L--~~~ak~~RQTllFSA 544 (754)
+..+.+|||||||+|| |++- +.+..+++.++. ++...-+..+++.+-- ......-+|+|+|||
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~--~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSA 276 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRL--KRKYEEIYEKIRELEEKIAELKDKKGVLVVSSA 276 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccc--ccccchhhhHHHHHHHhhhhcccCCceEEEEeC
Confidence 5569999999999998 4443 467777766632 0101223334433321 111222699999999
Q ss_pred CCCHH-HHH-HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEE
Q 004428 545 HPNPE-INA-FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIM 622 (754)
Q Consensus 545 t~~pe-ins-L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tL 622 (754)
|++|. +.. +++ ++- .+.+.. ......+|.|.|..++ . +...+. .++.. ...++|
T Consensus 277 T~~~~~~~~~l~~----~ll-~~~v~~-----~~~~~rnI~~~yi~~~--~-------k~~~L~-~ll~~----l~~~~L 332 (1176)
T PRK09401 277 TGRPRGNRVKLFR----ELL-GFEVGS-----PVFYLRNIVDSYIVDE--D-------SVEKLV-ELVKR----LGDGGL 332 (1176)
T ss_pred CCCccchHHHHhh----ccc-eEEecC-----cccccCCceEEEEEcc--c-------HHHHHH-HHHHh----cCCCEE
Confidence 99986 443 232 321 123321 1234567889888643 1 222111 22222 236899
Q ss_pred EEecchhc---HHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEEE
Q 004428 623 LFLSSYFE---FVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLII 694 (754)
Q Consensus 623 IFv~Sy~d---~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VIf 694 (754)
|||++... +.+|.++|+..|+++..+|+.+ .+++..|++|+++|||+ ||+++ ||+||++ |++|||
T Consensus 333 IFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~a--RGIDiP~~IryVI~ 405 (1176)
T PRK09401 333 IFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLV--RGIDLPERIRYAIF 405 (1176)
T ss_pred EEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCcee--ecCCCCcceeEEEE
Confidence 99999888 9999999999999999999999 45679999999999999 79999 9999999 899999
Q ss_pred ccCCC------CCCchhhhccccC
Q 004428 695 YSLPE------RKEFYPEIVNMLE 712 (754)
Q Consensus 695 Y~lP~------~pefY~erigrt~ 712 (754)
|++|. ..+.|+|+++|+-
T Consensus 406 y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 406 YGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred eCCCCEEEeccccccCHHHHHHHH
Confidence 99999 8899999999984
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=300.17 Aligned_cols=319 Identities=18% Similarity=0.258 Sum_probs=243.6
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|.++-|+|.|+.++-+ +|+.. |+.+|.++||...-|-||+..|++| -|||++|+|-.|++|-..
T Consensus 42 sgfrdfllkpellraivd----cgfeh-psevqhecipqailgmdvlcqaksg---------mgktavfvl~tlqqiepv 107 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVD----CGFEH-PSEVQHECIPQAILGMDVLCQAKSG---------MGKTAVFVLATLQQIEPV 107 (387)
T ss_pred cchhhhhcCHHHHHHHHh----ccCCC-chHhhhhhhhHHhhcchhheecccC---------CCceeeeehhhhhhcCCC
Confidence 458899999999999988 59875 9999999999999999999999988 789999999999988432
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.| ...||++|-|||||+||.+....++.....+.
T Consensus 108 ------------------------------~g--~vsvlvmchtrelafqi~~ey~rfskymP~vk-------------- 141 (387)
T KOG0329|consen 108 ------------------------------DG--QVSVLVMCHTRELAFQISKEYERFSKYMPSVK-------------- 141 (387)
T ss_pred ------------------------------CC--eEEEEEEeccHHHHHHHHHHHHHHHhhCCCce--------------
Confidence 12 46799999999999999999988875543111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.++|=| |+.+.+. ..++. .-++|+||||||+..++.+
T Consensus 142 -------------------------------vaVFfG--------G~~Ikkd-ee~lk--~~PhivVgTPGrilALvr~- 178 (387)
T KOG0329|consen 142 -------------------------------VSVFFG--------GLFIKKD-EELLK--NCPHIVVGTPGRILALVRN- 178 (387)
T ss_pred -------------------------------EEEEEc--------ceecccc-HHHHh--CCCeEEEcCcHHHHHHHHh-
Confidence 122222 3444432 22333 3799999999999999873
Q ss_pred hcccccCcccCCceeEEEEecchhhhhc--CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQ--NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQ--Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....|+++..+||||+|.||.| =|..+..|+. ..|.+ .|.|+||||++
T Consensus 179 ------k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr---~tp~~---------------------KQvmmfsatls 228 (387)
T KOG0329|consen 179 ------RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR---MTPHE---------------------KQVMMFSATLS 228 (387)
T ss_pred ------ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhh---cCccc---------------------ceeeeeeeecc
Confidence 3456999999999999999843 2556666664 45765 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
.+|+-+.+++++++ -.|-+..+.+ -....++|.|.++....+ .-|+ ..+|.. ....+++|||.|
T Consensus 229 keiRpvC~kFmQdP-mEi~vDdE~K----LtLHGLqQ~YvkLke~eK----Nrkl----~dLLd~---LeFNQVvIFvKs 292 (387)
T KOG0329|consen 229 KEIRPVCHKFMQDP-MEIFVDDEAK----LTLHGLQQYYVKLKENEK----NRKL----NDLLDV---LEFNQVVIFVKS 292 (387)
T ss_pred hhhHHHHHhhhcCc-hhhhccchhh----hhhhhHHHHHHhhhhhhh----hhhh----hhhhhh---hhhcceeEeeeh
Confidence 99999999999996 3555544422 135578999998764321 1111 123333 357899999987
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
-.. ++ | +.+ ||+|+++. ||+||..|.-|||||+|.+++.|.||
T Consensus 293 v~R------------------------------l~-f---~kr-~vat~lfg--rgmdiervNi~~NYdmp~~~DtYlHr 335 (387)
T KOG0329|consen 293 VQR------------------------------LS-F---QKR-LVATDLFG--RGMDIERVNIVFNYDMPEDSDTYLHR 335 (387)
T ss_pred hhh------------------------------hh-h---hhh-hHHhhhhc--cccCcccceeeeccCCCCCchHHHHH
Confidence 643 11 3 344 99999987 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEec-hhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFS-RFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~s-k~D~~~LErI 734 (754)
++|+||-| .|.++++++ ..|+.-|..+
T Consensus 336 v~rAgrfGtkglaitfvs~e~da~iLn~v 364 (387)
T KOG0329|consen 336 VARAGRFGTKGLAITFVSDENDAKILNPV 364 (387)
T ss_pred hhhhhccccccceeehhcchhhHHHhchh
Confidence 99999988 799999886 4466655443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=329.04 Aligned_cols=347 Identities=13% Similarity=0.169 Sum_probs=240.4
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 235 YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 235 l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
+.....|...++..+ |+.. ++|+|+++|+.+++|+|++++++|| +||+.+|.||+|.+
T Consensus 442 fpw~~~L~~~lk~~F---G~~s-FRp~Q~eaI~aiL~GrDVLVimPTG---------SGKSLcYQLPAL~~--------- 499 (1195)
T PLN03137 442 FPWTKKLEVNNKKVF---GNHS-FRPNQREIINATMSGYDVFVLMPTG---------GGKSLTYQLPALIC--------- 499 (1195)
T ss_pred CCchHHHHHHHHHHc---CCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------ccHHHHHHHHHHHc---------
Confidence 445556666666654 7766 7999999999999999999999999 89999999999841
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
...+|||+|||+|+.+.|..+..+.-.. ....|+.
T Consensus 500 -----------------------------~GiTLVISPLiSLmqDQV~~L~~~GI~A-----------a~L~s~~----- 534 (1195)
T PLN03137 500 -----------------------------PGITLVISPLVSLIQDQIMNLLQANIPA-----------ASLSAGM----- 534 (1195)
T ss_pred -----------------------------CCcEEEEeCHHHHHHHHHHHHHhCCCeE-----------EEEECCC-----
Confidence 0247999999999986666665542110 0111211
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCccccccccc--HHHHh-hhcccCCCCEEEeCchhHHH---HHhh
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT--RKSIK-LYNDFYTSDMIVASPINLHQ---KMTK 468 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~t--rk~lk-Lys~Fy~sDIIVASPlgLr~---lI~~ 468 (754)
... ++.++ +.+.....+||++||.+|.. ++..
T Consensus 535 ------------------------------------------s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~ 572 (1195)
T PLN03137 535 ------------------------------------------EWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRH 572 (1195)
T ss_pred ------------------------------------------CHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHH
Confidence 111 11122 11222458999999999862 2221
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
- ........|.++||||||.|+. |.| +..-...| ..++..+ .-+|+++||||.+
T Consensus 573 L-----~~L~~~~~LslIVIDEAHcVSq--WGhDFRpdYr~L------------~~Lr~~f------p~vPilALTATAT 627 (1195)
T PLN03137 573 L-----ENLNSRGLLARFVIDEAHCVSQ--WGHDFRPDYQGL------------GILKQKF------PNIPVLALTATAT 627 (1195)
T ss_pred H-----HhhhhccccceeccCcchhhhh--cccchHHHHHHH------------HHHHHhC------CCCCeEEEEecCC
Confidence 0 0111134488999999999984 653 11111111 0111111 1278999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCCcEEEEec
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQGGIMLFLS 626 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~~tLIFv~ 626 (754)
+.+..-+.+.+.... .+.+. +... .+++ ++.|-... ..... .|+..+... .....||||.
T Consensus 628 ~~V~eDI~~~L~l~~-~~vfr----~Sf~--RpNL---~y~Vv~k~-----kk~le----~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 628 ASVKEDVVQALGLVN-CVVFR----QSFN--RPNL---WYSVVPKT-----KKCLE----DIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred HHHHHHHHHHcCCCC-cEEee----cccC--ccce---EEEEeccc-----hhHHH----HHHHHHHhcccCCCceeEeC
Confidence 998876555543321 12111 1111 1122 22222111 11111 232223222 2457899999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
|..++.+|..+|.+.|+.+..+|+.+++.+|.++.+.|..|+++|||||+.|. +|+|+++|+.||+|++|.+++.|.|
T Consensus 689 SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG--MGIDkPDVR~VIHydlPkSiEsYyQ 766 (1195)
T PLN03137 689 SRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG--MGINKPDVRFVIHHSLPKSIEGYHQ 766 (1195)
T ss_pred chhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh--cCCCccCCcEEEEcCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHHHHHhC
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~LErIVG 736 (754)
++||+||.| .+.|+.||+..|...+..++.
T Consensus 767 riGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 767 ECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred hhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999998 689999999999988877763
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=318.17 Aligned_cols=327 Identities=13% Similarity=0.168 Sum_probs=229.8
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHH---------HHHHHHHHHhhcCCccccchhhhhhhcccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMET---------YLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKE 329 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~a---------y~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~ 329 (754)
..+|++++|.+.+++||+..|+|| +|||.+ |+++.+.++.+-..
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TG---------SGKTtqvPq~l~~~~flf~~l~~l~~~~~------------------ 218 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTG---------VGKTSQVPKLLLWFNYLFGGFDNLDKIDP------------------ 218 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC---------CCchhHHHHHHHHhhhccchhhhhhhccc------------------
Confidence 469999999999999999999999 899987 65666666532100
Q ss_pred ccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhccccccc
Q 004428 330 GILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRK 409 (754)
Q Consensus 330 ~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~ 409 (754)
. +..++|||++|||+||.|+...+.+..+... .+..+.
T Consensus 219 ----------~-~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~----~~g~~v--------------------------- 256 (675)
T PHA02653 219 ----------N-FIERPIVLSLPRVALVRLHSITLLKSLGFDE----IDGSPI--------------------------- 256 (675)
T ss_pred ----------c-cCCcEEEEECcHHHHHHHHHHHHHHHhCccc----cCCceE---------------------------
Confidence 0 1246899999999999999999887654321 000111
Q ss_pred CCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEe
Q 004428 410 SNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIID 489 (754)
Q Consensus 410 ~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlD 489 (754)
...|+|..+ .... +.....+|||+||+ | . .-+|+.+.++|||
T Consensus 257 -----------~v~~Gg~~~-----------~~~~--t~~k~~~Ilv~T~~-L----~---------l~~L~~v~~VVID 298 (675)
T PHA02653 257 -----------SLKYGSIPD-----------ELIN--TNPKPYGLVFSTHK-L----T---------LNKLFDYGTVIID 298 (675)
T ss_pred -----------EEEECCcch-----------HHhh--cccCCCCEEEEeCc-c----c---------ccccccCCEEEcc
Confidence 223444210 0000 01124799999975 2 1 1259999999999
Q ss_pred cchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEee
Q 004428 490 HADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLAC 569 (754)
Q Consensus 490 eAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~ 569 (754)
|||.++... +.+..++.. ++.+ .||+++||||+++++..+ .+++.|+ ..|.+.
T Consensus 299 EaHEr~~~~-DllL~llk~---~~~~--------------------~rq~ILmSATl~~dv~~l-~~~~~~p-~~I~I~- 351 (675)
T PHA02653 299 EVHEHDQIG-DIIIAVARK---HIDK--------------------IRSLFLMTATLEDDRDRI-KEFFPNP-AFVHIP- 351 (675)
T ss_pred ccccCccch-hHHHHHHHH---hhhh--------------------cCEEEEEccCCcHhHHHH-HHHhcCC-cEEEeC-
Confidence 999997332 445444432 2221 379999999999998876 6788775 355542
Q ss_pred cccCcccccccceeEEEEEeccCcccch---hHHHHHHHHHHHhHHhhh---cCCCcEEEEecchhcHHHHHHHHHhC--
Q 004428 570 EYKGVLPKVLLNVRQIYERFNADSIAKA---DDARLEYFTKKVFPKIKD---SIQGGIMLFLSSYFEFVRLRNFLKSQ-- 641 (754)
Q Consensus 570 ~~~g~i~~v~~~I~Q~f~r~~~~s~~~~---~d~Rf~yF~~~iLp~l~~---~~~~~tLIFv~Sy~d~vrlrn~Lk~~-- 641 (754)
| ....+|+|.|........... ...+. .++..+.. ...+.+|||||+..+..++...|.+.
T Consensus 352 ---g---rt~~pV~~~yi~~~~~~~~~~~y~~~~k~-----~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~ 420 (675)
T PHA02653 352 ---G---GTLFPISEVYVKNKYNPKNKRAYIEEEKK-----NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP 420 (675)
T ss_pred ---C---CcCCCeEEEEeecCcccccchhhhHHHHH-----HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC
Confidence 2 234578888865332100000 01111 12222222 23468999999999999999999987
Q ss_pred CCceEeecCCCCHHHHHHHHHHH-hcCCccEEEEcccccccCccccCCCCeEEEcc---CCC---------CCCchhhhc
Q 004428 642 NASFCLLGDYTEPSDISRARVWF-FEGKRKMILYTERSHFYHRYKIRGIQNLIIYS---LPE---------RKEFYPEIV 708 (754)
Q Consensus 642 ~~~f~~Ihey~sq~~r~rar~~F-~~G~~~ILL~TErahffRr~dIkgV~~VIfY~---lP~---------~pefY~eri 708 (754)
++.+..||+.++|. .+++..| ++|+.+|||+||+|. ||+||+||.+||+|+ .|. +...|.||+
T Consensus 421 ~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE--RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRa 496 (675)
T PHA02653 421 IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE--SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRK 496 (675)
T ss_pred CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh--ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhc
Confidence 79999999999986 4667777 689999999999999 999999999999999 564 556899999
Q ss_pred cccCCCCCceEEEEechhcHHHHHHH
Q 004428 709 NMLEGSHNMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 709 grt~ra~~g~~~~L~sk~D~~~LErI 734 (754)
||+||...|.|+.||++.+...+.++
T Consensus 497 GRAGR~~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 497 GRVGRVSPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred cCcCCCCCCeEEEEECHHHhHHHHHH
Confidence 99999999999999999886554444
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=326.21 Aligned_cols=355 Identities=13% Similarity=0.141 Sum_probs=230.3
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
++.. |||+|++++|.+++++|++.+|+|| +|||.||+||+|++++.....
T Consensus 29 ~~~~-~tpiQ~~Ai~~il~g~nvli~APTG---------SGKTlaa~Lpil~~l~~~~~~-------------------- 78 (876)
T PRK13767 29 KFGT-FTPPQRYAIPLIHEGKNVLISSPTG---------SGKTLAAFLAIIDELFRLGRE-------------------- 78 (876)
T ss_pred ccCC-CCHHHHHHHHHHHcCCCEEEECCCC---------CcHHHHHHHHHHHHHHhhccc--------------------
Confidence 5665 8999999999999999999999998 899999999999999853210
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
.. . -..+++|||+|||+||.|+...+.+...... ++....|..
T Consensus 79 --~~-~---~~~~~~LyIsPtraLa~di~~~L~~~l~~i~--------~~~~~~g~~----------------------- 121 (876)
T PRK13767 79 --GE-L---EDKVYCLYVSPLRALNNDIHRNLEEPLTEIR--------EIAKERGEE----------------------- 121 (876)
T ss_pred --cC-C---CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH--------HHHHhcCCC-----------------------
Confidence 00 0 1257899999999999999988775421110 111111110
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD 492 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD 492 (754)
.|.--..+..|+.. ... ..++.. ..+||||+||.+|..++.. .+-...|+++.+|||||||
T Consensus 122 ---~~~i~v~v~~Gdt~--------~~~-r~~~l~--~~p~IlVtTPE~L~~ll~~-----~~~~~~l~~l~~VVIDE~H 182 (876)
T PRK13767 122 ---LPEIRVAIRTGDTS--------SYE-KQKMLK--KPPHILITTPESLAILLNS-----PKFREKLRTVKWVIVDEIH 182 (876)
T ss_pred ---cCCeeEEEEcCCCC--------HHH-HHHHHh--CCCCEEEecHHHHHHHhcC-----hhHHHHHhcCCEEEEechh
Confidence 01111234445321 111 112222 3689999999999988852 1112368999999999999
Q ss_pred hhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCC-----CceEE
Q 004428 493 IILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANY-----QGKVK 566 (754)
Q Consensus 493 ~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~-----~G~Vk 566 (754)
.|+...+ .|+..+++.|..+- +.-.|.|+||||+++ +..+. .++... ...+.
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~--------------------~~~~q~IglSATl~~-~~~va-~~L~~~~~~~~~r~~~ 240 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELA--------------------GGEFVRIGLSATIEP-LEEVA-KFLVGYEDDGEPRDCE 240 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhc--------------------CCCCeEEEEecccCC-HHHHH-HHhcCccccCCCCceE
Confidence 9985433 35555554443211 123799999999986 22222 222211 11122
Q ss_pred Eeec-ccCccc-ccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC---
Q 004428 567 LACE-YKGVLP-KVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--- 641 (754)
Q Consensus 567 v~~~-~~g~i~-~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--- 641 (754)
+... +...+. .+...+.+. +... ........+ ..+...+. ...++||||+|...+.++...|++.
T Consensus 241 iv~~~~~k~~~i~v~~p~~~l---~~~~-~~~~~~~l~----~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~ 310 (876)
T PRK13767 241 IVDARFVKPFDIKVISPVDDL---IHTP-AEEISEALY----ETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPE 310 (876)
T ss_pred EEccCCCccceEEEeccCccc---cccc-cchhHHHHH----HHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchh
Confidence 2111 000000 000000000 0000 000011111 12222222 2468999999999999999999873
Q ss_pred ---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---
Q 004428 642 ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH--- 715 (754)
Q Consensus 642 ---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~--- 715 (754)
+..+...|+.+++.+|..+.+.|++|+++|||||+.+. +|+||++|++||+|+.|.++..|.||+||+||..
T Consensus 311 ~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le--~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~ 388 (876)
T PRK13767 311 EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLE--LGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEV 388 (876)
T ss_pred hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHH--hcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCC
Confidence 46799999999999999999999999999999999999 9999999999999999999999999999999763
Q ss_pred -CceEEEEechhcH
Q 004428 716 -NMTCTVLFSRFDM 728 (754)
Q Consensus 716 -~g~~~~L~sk~D~ 728 (754)
.|.+++ .++.|.
T Consensus 389 ~~g~ii~-~~~~~l 401 (876)
T PRK13767 389 SKGRIIV-VDRDDL 401 (876)
T ss_pred CcEEEEE-cCchhH
Confidence 244443 345553
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=299.18 Aligned_cols=298 Identities=17% Similarity=0.207 Sum_probs=206.5
Q ss_pred CceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceee
Q 004428 344 RPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQIL 423 (754)
Q Consensus 344 RPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~l 423 (754)
.|+++|+-|.||||.|+.+.|.++-.+... .+.|-.- +
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~n----p~~r~lL--------------------------------------m 323 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSN----PEVRSLL--------------------------------------M 323 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCC----hhhhhhh--------------------------------------h
Confidence 589999999999999999999887433310 0112111 2
Q ss_pred ccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHH
Q 004428 424 FGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWL 502 (754)
Q Consensus 424 F~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv 502 (754)
.+| + ..|.+.+... .+.||+|+||+||.+.|. .+...|+.+.+||+||||.+|-|.. +.+
T Consensus 324 igg---------v-~~r~Q~~ql~--~g~~ivvGtpgRl~~~is-------~g~~~lt~crFlvlDead~lL~qgy~d~I 384 (725)
T KOG0349|consen 324 IGG---------V-LKRTQCKQLK--DGTHIVVGTPGRLLQPIS-------KGLVTLTHCRFLVLDEADLLLGQGYDDKI 384 (725)
T ss_pred hhh---------H-HhHHHHHHhh--cCceeeecCchhhhhhhh-------ccceeeeeeEEEEecchhhhhhcccHHHH
Confidence 222 2 2233333332 689999999999999997 2456799999999999999997655 445
Q ss_pred HHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC-HHHHHHHHHhhcCCCceEEEeecc--cCcccc--
Q 004428 503 IEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN-PEINAFFNHHCANYQGKVKLACEY--KGVLPK-- 577 (754)
Q Consensus 503 ~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~-peinsL~~~~~~N~~G~Vkv~~~~--~g~i~~-- 577 (754)
.+.. +++|+- .-|| +.-|.++.|||+. -++..+..+.|+= +-+|.++.+- +..+..
T Consensus 385 ~r~h---~qip~~------------tsdg---~rlq~~vCsatlh~feVkk~~ervmhf-ptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 385 YRFH---GQIPHM------------TSDG---FRLQSPVCSATLHIFEVKKVGERVMHF-PTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred HHHh---ccchhh------------hcCC---cccccceeeeEEeEEEeeehhhhhccC-ceeEecccccccchhhccce
Confidence 5444 445542 1111 2258999999997 3566666666554 3466654321 001111
Q ss_pred --cccceeEE------EEEecc-----------CcccchhHHHHHHHHHHH-hHHhhhcCCCcEEEEecchhcHHHHHHH
Q 004428 578 --VLLNVRQI------YERFNA-----------DSIAKADDARLEYFTKKV-FPKIKDSIQGGIMLFLSSYFEFVRLRNF 637 (754)
Q Consensus 578 --v~~~I~Q~------f~r~~~-----------~s~~~~~d~Rf~yF~~~i-Lp~l~~~~~~~tLIFv~Sy~d~vrlrn~ 637 (754)
+.+++--. |++.+. .|+. .+..+.+.|...- +-.+++..+.++||||+++.|++.|+.+
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe-~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPE-NPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCC-ChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 11111111 111110 0111 1122332221111 1124456789999999999999999999
Q ss_pred HHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCC
Q 004428 638 LKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGS 714 (754)
Q Consensus 638 Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra 714 (754)
|... .++++++|++..+.+|...+..|+.+.+++||+||+|+ ||+||-|+..+||.-||+...-|+|||||.||+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaa--rgldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAA--RGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhh--ccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9875 47999999999999999999999999999999999999 999999999999999999999999999999998
Q ss_pred C-CceEEEEec
Q 004428 715 H-NMTCTVLFS 724 (754)
Q Consensus 715 ~-~g~~~~L~s 724 (754)
. -|.+++|+.
T Consensus 603 ermglaislva 613 (725)
T KOG0349|consen 603 ERMGLAISLVA 613 (725)
T ss_pred hhcceeEEEee
Confidence 7 478888874
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=308.22 Aligned_cols=334 Identities=13% Similarity=0.096 Sum_probs=234.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhh
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTK 319 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~k 319 (754)
...+.+++. -|+.. ++|+|+++|+.+++++|++.+++|| +|||.+|.||+|.+
T Consensus 12 ~~~~~l~~~---fG~~~-~r~~Q~~ai~~il~g~dvlv~apTG---------sGKTl~y~lpal~~-------------- 64 (607)
T PRK11057 12 LAKQVLQET---FGYQQ-FRPGQQEIIDAVLSGRDCLVVMPTG---------GGKSLCYQIPALVL-------------- 64 (607)
T ss_pred HHHHHHHHH---cCCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------chHHHHHHHHHHHc--------------
Confidence 334444444 38865 7999999999999999999999998 89999999999831
Q ss_pred hhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccch
Q 004428 320 VAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDD 399 (754)
Q Consensus 320 l~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~ 399 (754)
. ..+|||+||++|+.|.++.+..+.-... .+.+...
T Consensus 65 --------------------~----g~tlVisPl~sL~~dqv~~l~~~gi~~~------------~~~s~~~-------- 100 (607)
T PRK11057 65 --------------------D----GLTLVVSPLISLMKDQVDQLLANGVAAA------------CLNSTQT-------- 100 (607)
T ss_pred --------------------C----CCEEEEecHHHHHHHHHHHHHHcCCcEE------------EEcCCCC--------
Confidence 1 2479999999999999999887632110 0111000
Q ss_pred hhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH--HHhhhhcccccCc
Q 004428 400 ASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ--KMTKAEENKEQDV 477 (754)
Q Consensus 400 ~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~--lI~~~e~~k~rd~ 477 (754)
+.. ....+.... ....+|+++||.+|.. +++ .
T Consensus 101 -----------------~~~-------------------~~~~~~~~~-~g~~~il~~tPe~l~~~~~~~---------~ 134 (607)
T PRK11057 101 -----------------REQ-------------------QLEVMAGCR-TGQIKLLYIAPERLMMDNFLE---------H 134 (607)
T ss_pred -----------------HHH-------------------HHHHHHHHh-CCCCcEEEEChHHhcChHHHH---------H
Confidence 000 000011011 1357899999999873 222 1
Q ss_pred ccCCceeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH
Q 004428 478 DYLSSIEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA 552 (754)
Q Consensus 478 dfLSSIEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins 552 (754)
.....+.++||||||.|+. |.| +..|-......| ..|+++||||.++....
T Consensus 135 l~~~~l~~iVIDEaH~i~~--~G~~fr~~y~~L~~l~~~~p----------------------~~~~v~lTAT~~~~~~~ 190 (607)
T PRK11057 135 LAHWNPALLAVDEAHCISQ--WGHDFRPEYAALGQLRQRFP----------------------TLPFMALTATADDTTRQ 190 (607)
T ss_pred HhhCCCCEEEEeCcccccc--ccCcccHHHHHHHHHHHhCC----------------------CCcEEEEecCCChhHHH
Confidence 2245789999999999873 543 122211111122 26899999999998765
Q ss_pred HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHH
Q 004428 553 FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 553 L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~v 632 (754)
-+...+.-..-.+.+.. .. .+++. |..+... .... .++..+.......+||||+|..++.
T Consensus 191 di~~~l~l~~~~~~~~~-----~~--r~nl~--~~v~~~~-------~~~~----~l~~~l~~~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 191 DIVRLLGLNDPLIQISS-----FD--RPNIR--YTLVEKF-------KPLD----QLMRYVQEQRGKSGIIYCNSRAKVE 250 (607)
T ss_pred HHHHHhCCCCeEEEECC-----CC--CCcce--eeeeecc-------chHH----HHHHHHHhcCCCCEEEEECcHHHHH
Confidence 43333321111122211 11 11221 1111111 1111 2333333445678999999999999
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 633 RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 633 rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
.|...|++.++++..+|+.+++.+|.++...|..|+++|||+|+.+. +|+||++|++||+|++|.+++-|.|++||+|
T Consensus 251 ~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~--~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 251 DTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFG--MGINKPNVRFVVHFDIPRNIESYYQETGRAG 328 (607)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhh--ccCCCCCcCEEEEeCCCCCHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CCC-CceEEEEechhcHHHHHHHhC
Q 004428 713 GSH-NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 713 ra~-~g~~~~L~sk~D~~~LErIVG 736 (754)
|.+ .|.|+.||+..|...+.+++-
T Consensus 329 R~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 329 RDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CCCCCceEEEEeCHHHHHHHHHHHh
Confidence 988 688999999999877766653
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=328.72 Aligned_cols=317 Identities=11% Similarity=0.139 Sum_probs=210.3
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 243 KHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 243 ~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
+.+.+.+++..+.. |||+|+.++|.++.|+|++++++|| +|||. |+++++.++..
T Consensus 65 ~~f~~~f~~~~g~~-p~~iQ~~~i~~il~G~d~vi~ApTG---------sGKT~-f~l~~~~~l~~-------------- 119 (1171)
T TIGR01054 65 KEFEEFFKKAVGSE-PWSIQKMWAKRVLRGDSFAIIAPTG---------VGKTT-FGLAMSLFLAK-------------- 119 (1171)
T ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHhCCCeEEEECCCC---------CCHHH-HHHHHHHHHHh--------------
Confidence 34444444434444 8999999999999999999999998 89996 88888766531
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
+ .++||||+|||+||.|+.+.+.+++.... +.+ ......+|+
T Consensus 120 -----------------~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~~-i~~---~~i~~~~Gg-------------- 161 (1171)
T TIGR01054 120 -----------------K---GKRCYIILPTTLLVIQVAEKISSLAEKAG-VGT---VNIGAYHSR-------------- 161 (1171)
T ss_pred -----------------c---CCeEEEEeCHHHHHHHHHHHHHHHHHhcC-Cce---eeeeeecCC--------------
Confidence 1 37899999999999999999999875321 000 000011222
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccH--HHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccC
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTR--KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYL 480 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~tr--k~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfL 480 (754)
+.... ..++.... .++|||||||++|...+.. |
T Consensus 162 ---------------------------------~~~~e~~~~~~~l~~-~~~dIlV~Tp~rL~~~~~~-----------l 196 (1171)
T TIGR01054 162 ---------------------------------LPTKEKKEFMERIEN-GDFDILITTTMFLSKNYDE-----------L 196 (1171)
T ss_pred ---------------------------------CCHHHHHHHHHHHhc-CCCCEEEECHHHHHHHHHH-----------h
Confidence 22211 12222221 3589999999999988752 2
Q ss_pred C-ceeEEEEecchhhh------------hcCch-HHHHHHHHhccCCCCCCCCchhhhhhh--hcccCCCccccE--EEE
Q 004428 481 S-SIEVLIIDHADIIL------------MQNWS-WLIEVVEQLNRIPSKQHGTDVMRIRQW--YLDGYSRFYRQT--VLL 542 (754)
Q Consensus 481 S-SIEiLVlDeAD~mL------------mQNw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w--~L~~~ak~~RQT--llF 542 (754)
. .+.++||||||+|| |++.+ .+..|++.++..-+ .-+...++.+ .+.. .+..||+ ++|
T Consensus 197 ~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~q~~li~~ 272 (1171)
T TIGR01054 197 GPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLK---LYRALHAKKRLELLEA-IPGKKRGCLIVS 272 (1171)
T ss_pred cCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccc---cchHHHHHHHHHHHHh-hhhccCcEEEEE
Confidence 2 89999999999998 45554 36666655432100 0000011110 0110 1123664 569
Q ss_pred cCCC-CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 543 SYHP-NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 543 SAt~-~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
|||. +..+.. .++++.- .+.+... .....+|.|.|...+. +.. .++ .+.+....++
T Consensus 273 SAT~~p~~~~~---~l~r~ll-~~~v~~~-----~~~~r~I~~~~~~~~~---------~~~----~L~-~ll~~l~~~~ 329 (1171)
T TIGR01054 273 SATGRPRGKRA---KLFRELL-GFEVGGG-----SDTLRNVVDVYVEDED---------LKE----TLL-EIVKKLGTGG 329 (1171)
T ss_pred eCCCCccccHH---HHccccc-ceEecCc-----cccccceEEEEEeccc---------HHH----HHH-HHHHHcCCCE
Confidence 9995 444432 2334432 2333221 1245678888764321 111 121 2222224689
Q ss_pred EEEecch---hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEE
Q 004428 622 MLFLSSY---FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLI 693 (754)
Q Consensus 622 LIFv~Sy---~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VI 693 (754)
||||++. ..+.+|.++|++.|+++..+|+.+++ +++..|++|+++|||+ ||+++ ||+||++ |++||
T Consensus 330 IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~a--RGIDip~~V~~vI 403 (1171)
T TIGR01054 330 IVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLV--RGLDLPERVRYAV 403 (1171)
T ss_pred EEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCccc--ccCCCCccccEEE
Confidence 9999999 99999999999999999999999974 6899999999999999 59999 9999999 89999
Q ss_pred EccCCCC
Q 004428 694 IYSLPER 700 (754)
Q Consensus 694 fY~lP~~ 700 (754)
|||+|.+
T Consensus 404 ~~~~P~~ 410 (1171)
T TIGR01054 404 FLGVPKF 410 (1171)
T ss_pred EECCCCE
Confidence 9999976
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=313.19 Aligned_cols=313 Identities=18% Similarity=0.179 Sum_probs=229.1
Q ss_pred HHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccC
Q 004428 261 KQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDR 340 (754)
Q Consensus 261 iQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQ 340 (754)
+-.+++..+.+.++|+.+++|| +|||.+|.+++|+++.
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TG---------SGKTT~vpl~lL~~~~--------------------------------- 43 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPG---------AGKSTAVPLALLDAPG--------------------------------- 43 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCC---------CCHHHHHHHHHHHhhc---------------------------------
Confidence 3456677778899999999998 8999999999998762
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCc
Q 004428 341 GFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDY 420 (754)
Q Consensus 341 GftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~ 420 (754)
..++|||+.|||++|.|+.+.+.+.....-.. ..| |
T Consensus 44 --~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~----------~VG--------------------------------y 79 (819)
T TIGR01970 44 --IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ----------TVG--------------------------------Y 79 (819)
T ss_pred --cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc----------EEE--------------------------------E
Confidence 02479999999999999999886543211000 001 0
Q ss_pred eeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch-hhhhcCc
Q 004428 421 QILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD-IILMQNW 499 (754)
Q Consensus 421 ~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD-~mLmQNw 499 (754)
.+.+.. .+ + .+.+|+|+|||+|...+.. +. .|+.+.++|||||| +++...+
T Consensus 80 --------------~vr~~~-~~---s--~~t~I~v~T~G~Llr~l~~-------d~-~L~~v~~VIiDEaHER~L~~Dl 131 (819)
T TIGR01970 80 --------------RVRGEN-KV---S--RRTRLEVVTEGILTRMIQD-------DP-ELDGVGALIFDEFHERSLDADL 131 (819)
T ss_pred --------------EEcccc-cc---C--CCCcEEEECCcHHHHHHhh-------Cc-ccccCCEEEEeccchhhhccch
Confidence 011111 00 1 2478999999999998862 23 59999999999999 5774322
Q ss_pred --hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 500 --SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 500 --~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
..+..|... ++.+ .|+|+||||++.+. +.+++.+.+ .|.+. |.
T Consensus 132 ~L~ll~~i~~~---lr~d---------------------lqlIlmSATl~~~~---l~~~l~~~~-vI~~~----gr--- 176 (819)
T TIGR01970 132 GLALALDVQSS---LRED---------------------LKILAMSATLDGER---LSSLLPDAP-VVESE----GR--- 176 (819)
T ss_pred HHHHHHHHHHh---cCCC---------------------ceEEEEeCCCCHHH---HHHHcCCCc-EEEec----Cc---
Confidence 122333332 2332 79999999999764 456766643 33321 21
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh---CCCceEeecCCCCH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLGDYTEP 654 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ihey~sq 654 (754)
...|++.|...... .++.-.+...+-.+.....+.+|||+|+..+..++.+.|++ .++.+..+|+.+++
T Consensus 177 -~~pVe~~y~~~~~~-------~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~ 248 (819)
T TIGR01970 177 -SFPVEIRYLPLRGD-------QRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSL 248 (819)
T ss_pred -ceeeeeEEeecchh-------hhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCH
Confidence 22477777654321 12211111223333333468899999999999999999987 48999999999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc------------------hhhhccccCCCCC
Q 004428 655 SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF------------------YPEIVNMLEGSHN 716 (754)
Q Consensus 655 ~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef------------------Y~erigrt~ra~~ 716 (754)
.++.++...|.+|+.+|||+|++|. ||++|+||++||+|++|..+.| |.||+||+||...
T Consensus 249 ~eq~~~~~~~~~G~rkVlVATnIAE--rgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~ 326 (819)
T TIGR01970 249 AAQDRAIKPDPQGRRKVVLATNIAE--TSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP 326 (819)
T ss_pred HHHHHHHhhcccCCeEEEEecchHh--hcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC
Confidence 9999999999999999999999999 9999999999999999987655 8899999999989
Q ss_pred ceEEEEechhcHHHHH
Q 004428 717 MTCTVLFSRFDMLRLE 732 (754)
Q Consensus 717 g~~~~L~sk~D~~~LE 732 (754)
|.|+.|||+.+...|.
T Consensus 327 G~cyrL~t~~~~~~l~ 342 (819)
T TIGR01970 327 GVCYRLWSEEQHQRLP 342 (819)
T ss_pred CEEEEeCCHHHHHhhh
Confidence 9999999998876653
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=323.58 Aligned_cols=314 Identities=14% Similarity=0.113 Sum_probs=225.2
Q ss_pred CCHHHHHHhhhhhCC------ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 258 HSSKQRSFFSLCNSY------RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y------~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
|||+|+++||.++++ .|+|.|+.|| +|||.+|++.+...+.
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TG---------sGKT~val~aa~~~~~------------------------ 647 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVG---------FGKTEVAMRAAFLAVE------------------------ 647 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCC---------cCHHHHHHHHHHHHHH------------------------
Confidence 799999999999987 8999999998 8999999888865432
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
. .++||||+|||+||.|+++.+.+...... + +.....|+.
T Consensus 648 --------~---g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~-v------~i~~l~g~~---------------------- 687 (1147)
T PRK10689 648 --------N---HKQVAVLVPTTLLAQQHYDNFRDRFANWP-V------RIEMLSRFR---------------------- 687 (1147)
T ss_pred --------c---CCeEEEEeCcHHHHHHHHHHHHHhhccCC-c------eEEEEECCC----------------------
Confidence 1 36799999999999999999997643211 1 111111111
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+.+-.++.++-... ..+||||+||..| . .+. .+..+.+||||||
T Consensus 688 -----------------------s~~e~~~il~~l~~-g~~dIVVgTp~lL----~-------~~v-~~~~L~lLVIDEa 731 (1147)
T PRK10689 688 -----------------------SAKEQTQILAEAAE-GKIDILIGTHKLL----Q-------SDV-KWKDLGLLIVDEE 731 (1147)
T ss_pred -----------------------CHHHHHHHHHHHHh-CCCCEEEECHHHH----h-------CCC-CHhhCCEEEEech
Confidence 01111122221111 3589999999532 2 122 3678999999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
|+|- ..+. .. +..+|.+ +|+|+||||..|....+....+.++. .|.. ++
T Consensus 732 hrfG---~~~~-e~---lk~l~~~---------------------~qvLl~SATpiprtl~l~~~gl~d~~-~I~~-~p- 780 (1147)
T PRK10689 732 HRFG---VRHK-ER---IKAMRAD---------------------VDILTLTATPIPRTLNMAMSGMRDLS-IIAT-PP- 780 (1147)
T ss_pred hhcc---hhHH-HH---HHhcCCC---------------------CcEEEEcCCCCHHHHHHHHhhCCCcE-EEec-CC-
Confidence 9973 2332 22 2233433 89999999999998877776666642 2322 11
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC--CCceEeec
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFCLLG 649 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~~Ih 649 (754)
.+ ...|++++..++.. ..| ..++..+. ..++++||||+.....++.+.|++. ++.+..+|
T Consensus 781 ~~-----r~~v~~~~~~~~~~------~~k-----~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lH 842 (1147)
T PRK10689 781 AR-----RLAVKTFVREYDSL------VVR-----EAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 (1147)
T ss_pred CC-----CCCceEEEEecCcH------HHH-----HHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 11 12355555443210 111 13444443 2478999999999999999999987 88999999
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE-----EccCCCCCCchhhhccccCCCC-CceEEEEe
Q 004428 650 DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI-----IYSLPERKEFYPEIVNMLEGSH-NMTCTVLF 723 (754)
Q Consensus 650 ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI-----fY~lP~~pefY~erigrt~ra~-~g~~~~L~ 723 (754)
|.|++.+|.+++..|++|+++|||||+++. ||+||++|++|| +|++|. |.||+||+||.+ .|.|+.++
T Consensus 843 G~m~q~eRe~im~~Fr~Gk~~VLVaTdIie--rGIDIP~v~~VIi~~ad~fglaq----~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 843 GQMRERELERVMNDFHHQRFNVLVCTTIIE--TGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECchhh--cccccccCCEEEEecCCCCCHHH----HHHHhhccCCCCCceEEEEEe
Confidence 999999999999999999999999999999 999999999999 888885 899999999987 68899877
Q ss_pred ch------hcHHHHHHHh
Q 004428 724 SR------FDMLRLERIV 735 (754)
Q Consensus 724 sk------~D~~~LErIV 735 (754)
.. ....+|+.|.
T Consensus 917 ~~~~~~~~~~~~rl~~~~ 934 (1147)
T PRK10689 917 PHPKAMTTDAQKRLEAIA 934 (1147)
T ss_pred CCCcccCHHHHHHHHHHH
Confidence 43 2356666554
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=331.98 Aligned_cols=363 Identities=11% Similarity=0.110 Sum_probs=240.6
Q ss_pred HHHHHhhh-CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 244 HWLDIYNK-SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 244 ~~~~~~~~-~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
.|.+.+++ .|+ . |||+|+.++|.+++++|+++.++|| +|||..+.++++.+..
T Consensus 67 ~~~~~f~~~~G~-~-pt~iQ~~~i~~il~G~d~li~APTG---------sGKTl~~~~~al~~~~--------------- 120 (1638)
T PRK14701 67 EFEEFFEKITGF-E-FWSIQKTWAKRILRGKSFSIVAPTG---------MGKSTFGAFIALFLAL--------------- 120 (1638)
T ss_pred HHHHHHHHhhCC-C-CCHHHHHHHHHHHcCCCEEEEEcCC---------CCHHHHHHHHHHHHHh---------------
Confidence 33344433 687 4 8999999999999999999999998 8999966666665421
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
+ .+++|||+|||+||.|+++.|..++.... + ..+....+|+
T Consensus 121 -----------------~---g~~aLVl~PTreLa~Qi~~~l~~l~~~~~-~----~v~v~~~~g~-------------- 161 (1638)
T PRK14701 121 -----------------K---GKKCYIILPTTLLVKQTVEKIESFCEKAN-L----DVRLVYYHSN-------------- 161 (1638)
T ss_pred -----------------c---CCeEEEEECHHHHHHHHHHHHHHHHhhcC-C----ceeEEEEeCC--------------
Confidence 1 25899999999999999999999865321 0 0011111121
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHH--HHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccC
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRK--SIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYL 480 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk--~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfL 480 (754)
++...+ .++.... ..+|||||||++|...+.. .. .
T Consensus 162 ---------------------------------~s~~e~~~~~~~l~~-g~~dILV~TPgrL~~~~~~--------l~-~ 198 (1638)
T PRK14701 162 ---------------------------------LRKKEKEEFLERIEN-GDFDILVTTAQFLARNFPE--------MK-H 198 (1638)
T ss_pred ---------------------------------CCHHHHHHHHHHHhc-CCCCEEEECCchhHHhHHH--------Hh-h
Confidence 222221 1221111 2489999999999987752 11 2
Q ss_pred CceeEEEEecchhhh------------hcCchHHH-HHHHHhccCCCCCCC---CchhhhhhhhcccCCCcccc-EEEEc
Q 004428 481 SSIEVLIIDHADIIL------------MQNWSWLI-EVVEQLNRIPSKQHG---TDVMRIRQWYLDGYSRFYRQ-TVLLS 543 (754)
Q Consensus 481 SSIEiLVlDeAD~mL------------mQNw~hv~-~Il~~Ln~~Pk~~h~---~DfsRvR~w~L~~~ak~~RQ-TllFS 543 (754)
..|.++||||||.|| |++.+.+. .+++.+++.+..... ..+.+++.-.. ..+..+| +|+||
T Consensus 199 ~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ll~~S 276 (1638)
T PRK14701 199 LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIE--KIGNKIGCLIVAS 276 (1638)
T ss_pred CCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhh--hcCCCccEEEEEe
Confidence 679999999999997 35555444 344444332221000 01122222110 1122356 67899
Q ss_pred CCCCH--HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 544 YHPNP--EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 544 At~~p--einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
||+++ .+..++ +++- .+.+... .....+|.|.|..++.. .+ .. +..++. . ...++
T Consensus 277 AT~~~r~~~~~l~----~~~l-~f~v~~~-----~~~lr~i~~~yi~~~~~-------~k-~~-L~~ll~---~-~g~~g 333 (1638)
T PRK14701 277 ATGKAKGDRVKLY----RELL-GFEVGSG-----RSALRNIVDVYLNPEKI-------IK-EH-VRELLK---K-LGKGG 333 (1638)
T ss_pred cCCCchhHHHHHh----hcCe-EEEecCC-----CCCCCCcEEEEEECCHH-------HH-HH-HHHHHH---h-CCCCe
Confidence 99997 354444 3432 2333221 12456788888764321 11 11 112222 2 24689
Q ss_pred EEEecchhcH---HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc----ccccccCccccCC-CCeEE
Q 004428 622 MLFLSSYFEF---VRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT----ERSHFYHRYKIRG-IQNLI 693 (754)
Q Consensus 622 LIFv~Sy~d~---vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T----ErahffRr~dIkg-V~~VI 693 (754)
||||++.... .+|.++|.+.|+++..+|+. |.+++..|++|+++|||+| |+++ ||+||++ |++||
T Consensus 334 IVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaa--RGIDiP~~Vryvi 406 (1638)
T PRK14701 334 LIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLV--RGLDLPERIRFAV 406 (1638)
T ss_pred EEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeE--ecCccCCccCEEE
Confidence 9999998864 79999999999999999994 8899999999999999999 5899 9999999 99999
Q ss_pred EccCCC---CCCchhhhc-------------cccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhhc
Q 004428 694 IYSLPE---RKEFYPEIV-------------NMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVKS 746 (754)
Q Consensus 694 fY~lP~---~pefY~eri-------------grt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~s 746 (754)
|||+|. +.+.|.+-. |+.+|.+ ..-+...+...|...|.+++..+..-+-+..
T Consensus 407 ~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 476 (1638)
T PRK14701 407 FYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKDEEVIKKVAE 476 (1638)
T ss_pred EeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhccHHHHHHhhc
Confidence 999999 888666544 5555544 2334456778888888888888776665553
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-31 Score=314.57 Aligned_cols=331 Identities=14% Similarity=0.138 Sum_probs=230.2
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC------ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCc
Q 004428 239 PKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY------RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDL 312 (754)
Q Consensus 239 ~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y------~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~ 312 (754)
..+.+.+.+. -+| . |||+|+.+|+.+.+. .|++.|++|| +|||.+|++++++.+..
T Consensus 438 ~~~~~~~~~~---~~f-~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTG---------sGKT~val~a~l~al~~---- 499 (926)
T TIGR00580 438 LEWQQEFEDS---FPF-E-ETPDQLKAIEEIKADMESPRPMDRLVCGDVG---------FGKTEVAMRAAFKAVLD---- 499 (926)
T ss_pred HHHHHHHHHh---CCC-C-CCHHHHHHHHHHHhhhcccCcCCEEEECCCC---------ccHHHHHHHHHHHHHHh----
Confidence 3444444443 255 3 799999999999885 7999999998 89999999999987741
Q ss_pred cccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccc
Q 004428 313 VTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEE 392 (754)
Q Consensus 313 V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~ 392 (754)
| ++||||+||++||.|+++.+.++..... +.+. ...|...
T Consensus 500 ----------------------------g---~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~------~Lsg~~~-- 539 (926)
T TIGR00580 500 ----------------------------G---KQVAVLVPTTLLAQQHFETFKERFANFP-VTIE------LLSRFRS-- 539 (926)
T ss_pred ----------------------------C---CeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEE------EEecccc--
Confidence 2 5799999999999999999998754321 1111 1111110
Q ss_pred cCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcc
Q 004428 393 EDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEEN 472 (754)
Q Consensus 393 ~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~ 472 (754)
.+-.++.++-... ..+||||+|| + ++.
T Consensus 540 -------------------------------------------~~e~~~~~~~l~~-g~~dIVIGTp-~---ll~----- 566 (926)
T TIGR00580 540 -------------------------------------------AKEQNEILKELAS-GKIDILIGTH-K---LLQ----- 566 (926)
T ss_pred -------------------------------------------HHHHHHHHHHHHc-CCceEEEchH-H---Hhh-----
Confidence 0001122222221 3589999999 3 333
Q ss_pred cccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH
Q 004428 473 KEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA 552 (754)
Q Consensus 473 k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins 552 (754)
++ ..+..+.+|||||||++-...+ .. |..++. ..|+|+||||..|....
T Consensus 567 --~~-v~f~~L~llVIDEahrfgv~~~----~~---L~~~~~---------------------~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 567 --KD-VKFKDLGLLIIDEEQRFGVKQK----EK---LKELRT---------------------SVDVLTLSATPIPRTLH 615 (926)
T ss_pred --CC-CCcccCCEEEeecccccchhHH----HH---HHhcCC---------------------CCCEEEEecCCCHHHHH
Confidence 12 3578999999999999643222 22 222333 27999999999987665
Q ss_pred HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHH
Q 004428 553 FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 553 L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~v 632 (754)
+....+.++. .|...+ .+ ...|++.+...+ +.. ....++..+. ..++++||||+.....
T Consensus 616 ~~l~g~~d~s-~I~~~p--~~-----R~~V~t~v~~~~--------~~~---i~~~i~~el~--~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 616 MSMSGIRDLS-IIATPP--ED-----RLPVRTFVMEYD--------PEL---VREAIRRELL--RGGQVFYVHNRIESIE 674 (926)
T ss_pred HHHhcCCCcE-EEecCC--CC-----ccceEEEEEecC--------HHH---HHHHHHHHHH--cCCeEEEEECCcHHHH
Confidence 5544444431 222111 11 123555443321 111 1112333333 3578999999999999
Q ss_pred HHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC-CCchhhhcc
Q 004428 633 RLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER-KEFYPEIVN 709 (754)
Q Consensus 633 rlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~-pefY~erig 709 (754)
++.+.|++. +++++.+||.+++.+|.+++..|++|+++|||+|+++. ||+||++|++||+|+.|.. ...|.||+|
T Consensus 675 ~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie--~GIDIp~v~~VIi~~a~~~gls~l~Qr~G 752 (926)
T TIGR00580 675 KLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIE--TGIDIPNANTIIIERADKFGLAQLYQLRG 752 (926)
T ss_pred HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh--cccccccCCEEEEecCCCCCHHHHHHHhc
Confidence 999999985 89999999999999999999999999999999999999 9999999999999999864 235779999
Q ss_pred ccCCCC-CceEEEEech------hcHHHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSR------FDMLRLERI 734 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk------~D~~~LErI 734 (754)
|+||++ .|.|+.|+.. ....+|+.|
T Consensus 753 RvGR~g~~g~aill~~~~~~l~~~~~~RL~~~ 784 (926)
T TIGR00580 753 RVGRSKKKAYAYLLYPHQKALTEDAQKRLEAI 784 (926)
T ss_pred CCCCCCCCeEEEEEECCcccCCHHHHHHHHHH
Confidence 999988 7999999854 334566555
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-31 Score=310.73 Aligned_cols=341 Identities=16% Similarity=0.140 Sum_probs=239.7
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+.|++++|++.+++.|.+. |+.. ++|+|.++|+. +++++|++++++|| +|||.+|.|++|+++.+
T Consensus 1 ~~~~~l~lp~~~~~~l~~~----g~~~-l~p~Q~~ai~~~~~~g~nvlv~APTG---------SGKTlia~lail~~l~~ 66 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAE----GIEE-LYPPQAEAVEAGLLDGKNLLAAIPTA---------SGKTLIAELAMLKAIAR 66 (737)
T ss_pred CChhhcCCCHHHHHHHHhC----CCCc-CCHHHHHHHHHHHhCCCcEEEECCCc---------chHHHHHHHHHHHHHhc
Confidence 3588999999999998774 7776 79999999998 78999999999998 89999999999999941
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
..|+|||+|||+||.|+++.+.++.+.. + +.. .+
T Consensus 67 -----------------------------------~~kal~i~P~raLa~q~~~~~~~~~~~g--~------~v~-~~-- 100 (737)
T PRK02362 67 -----------------------------------GGKALYIVPLRALASEKFEEFERFEELG--V------RVG-IS-- 100 (737)
T ss_pred -----------------------------------CCcEEEEeChHHHHHHHHHHHHHhhcCC--C------EEE-EE--
Confidence 2479999999999999999998875321 1 111 11
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.|+.+ ...+. ...+|||||||.++..++.+
T Consensus 101 ------------------------------------tGd~~--------~~~~~------l~~~~IiV~Tpek~~~llr~ 130 (737)
T PRK02362 101 ------------------------------------TGDYD--------SRDEW------LGDNDIIVATSEKVDSLLRN 130 (737)
T ss_pred ------------------------------------eCCcC--------ccccc------cCCCCEEEECHHHHHHHHhc
Confidence 12110 00001 13579999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
...+|..|.++||||||.|...+ ...++.++..+..++. ..|.+++|||++
T Consensus 131 -------~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~---------------------~~qii~lSATl~ 182 (737)
T PRK02362 131 -------GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP---------------------DLQVVALSATIG 182 (737)
T ss_pred -------ChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC---------------------CCcEEEEcccCC
Confidence 23578999999999999998544 4556666665544332 279999999996
Q ss_pred HHHHHHHHHhhcC------C-CceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 548 PEINAFFNHHCAN------Y-QGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 548 peinsL~~~~~~N------~-~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
. ...+. .++.. + +..++....+.+. +...-.+. .+.... .+..++ .++..+. ..++
T Consensus 183 n-~~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~---~~~~~~~~--~~~~~~----~~~~~~----~~~~~~~--~~~~ 245 (737)
T PRK02362 183 N-ADELA-DWLDAELVDSEWRPIDLREGVFYGGA---IHFDDSQR--EVEVPS----KDDTLN----LVLDTLE--EGGQ 245 (737)
T ss_pred C-HHHHH-HHhCCCcccCCCCCCCCeeeEecCCe---eccccccc--cCCCcc----chHHHH----HHHHHHH--cCCC
Confidence 3 22332 22211 0 0000000000000 00000000 011100 011111 1222222 4578
Q ss_pred EEEEecchhcHHHHHHHHHhCC------------------------------------CceEeecCCCCHHHHHHHHHHH
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQN------------------------------------ASFCLLGDYTEPSDISRARVWF 664 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~------------------------------------~~f~~Ihey~sq~~r~rar~~F 664 (754)
+||||+|..++..+...|.... ..++..|+.+++.+|......|
T Consensus 246 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~F 325 (737)
T PRK02362 246 CLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAF 325 (737)
T ss_pred eEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHH
Confidence 9999999999999888886431 2467789999999999999999
Q ss_pred hcCCccEEEEcccccccCccccCCCCeEEE----cc-----CCCCCCchhhhccccCCCC---CceEEEEechhc
Q 004428 665 FEGKRKMILYTERSHFYHRYKIRGIQNLII----YS-----LPERKEFYPEIVNMLEGSH---NMTCTVLFSRFD 727 (754)
Q Consensus 665 ~~G~~~ILL~TErahffRr~dIkgV~~VIf----Y~-----lP~~pefY~erigrt~ra~---~g~~~~L~sk~D 727 (754)
++|.++|||||+.++ +|++++.+..||+ |+ .|.++..|.||+||+||.+ .|.|+.+....+
T Consensus 326 r~G~i~VLvaT~tla--~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 326 RDRLIKVISSTPTLA--AGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred HcCCCeEEEechhhh--hhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 999999999999999 9999999999997 77 6888999999999999987 388888876543
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=309.83 Aligned_cols=312 Identities=17% Similarity=0.213 Sum_probs=226.4
Q ss_pred HHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccC
Q 004428 261 KQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDR 340 (754)
Q Consensus 261 iQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQ 340 (754)
+-.+++..+.+.+||+..++|| +|||.+|.+++|++..
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TG---------SGKTt~~pl~lL~~~~--------------------------------- 46 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTG---------AGKSTWLPLQLLQHGG--------------------------------- 46 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCC---------CCHHHHHHHHHHHcCC---------------------------------
Confidence 3355667777899999999998 8999999999997531
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCc
Q 004428 341 GFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDY 420 (754)
Q Consensus 341 GftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~ 420 (754)
..++|||+.|||++|.|+.+.+.+.....-...| |.
T Consensus 47 --~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V----------Gy-------------------------------- 82 (812)
T PRK11664 47 --INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV----------GY-------------------------------- 82 (812)
T ss_pred --cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE----------EE--------------------------------
Confidence 1247999999999999999988654321100000 00
Q ss_pred eeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchh-hhhcCc
Q 004428 421 QILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADI-ILMQNW 499 (754)
Q Consensus 421 ~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~-mLmQNw 499 (754)
..+| .. .+ + .+.+|+|+|||+|..++.. +. .|+.+.++||||||. ++....
T Consensus 83 --~vr~------------~~-~~---~--~~t~I~v~T~G~Llr~l~~-------d~-~L~~v~~IIlDEaHER~l~~Dl 134 (812)
T PRK11664 83 --RMRA------------ES-KV---G--PNTRLEVVTEGILTRMIQR-------DP-ELSGVGLVILDEFHERSLQADL 134 (812)
T ss_pred --EecC------------cc-cc---C--CCCcEEEEChhHHHHHHhh-------CC-CcCcCcEEEEcCCCccccccch
Confidence 0001 00 00 0 2468999999999998862 33 599999999999996 453321
Q ss_pred --hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 500 --SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 500 --~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
..+..++ ..+|.+ .|+|+||||++.+. +..++.|.+ .|.+ .|.
T Consensus 135 ~L~ll~~i~---~~lr~~---------------------lqlilmSATl~~~~---l~~~~~~~~-~I~~----~gr--- 179 (812)
T PRK11664 135 ALALLLDVQ---QGLRDD---------------------LKLLIMSATLDNDR---LQQLLPDAP-VIVS----EGR--- 179 (812)
T ss_pred HHHHHHHHH---HhCCcc---------------------ceEEEEecCCCHHH---HHHhcCCCC-EEEe----cCc---
Confidence 2233333 223332 79999999999762 345665532 3332 121
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh---CCCceEeecCCCCH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLGDYTEP 654 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ihey~sq 654 (754)
...|++.|..+... .++.-.+..++-.+.....+.+|||+|+..+..++.+.|++ .++.+..+|+.+++
T Consensus 180 -~~pV~~~y~~~~~~-------~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~ 251 (812)
T PRK11664 180 -SFPVERRYQPLPAH-------QRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSL 251 (812)
T ss_pred -cccceEEeccCchh-------hhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCH
Confidence 22477777654321 12221122233333333468899999999999999999987 68899999999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc------------------hhhhccccCCCCC
Q 004428 655 SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF------------------YPEIVNMLEGSHN 716 (754)
Q Consensus 655 ~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef------------------Y~erigrt~ra~~ 716 (754)
.++.+++..|.+|+.+|||+|++|. ||++|+||++||++++|..+.| |.||+||+||...
T Consensus 252 ~eq~~~~~~~~~G~rkVlvATnIAE--rsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~ 329 (812)
T PRK11664 252 AEQQKAILPAPAGRRKVVLATNIAE--TSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP 329 (812)
T ss_pred HHHHHHhccccCCCeEEEEecchHH--hcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC
Confidence 9999999999999999999999999 9999999999999999988765 9999999999989
Q ss_pred ceEEEEechhcHHHH
Q 004428 717 MTCTVLFSRFDMLRL 731 (754)
Q Consensus 717 g~~~~L~sk~D~~~L 731 (754)
|.|+.||++.+...|
T Consensus 330 G~cyrL~t~~~~~~l 344 (812)
T PRK11664 330 GICLHLYSKEQAERA 344 (812)
T ss_pred cEEEEecCHHHHhhC
Confidence 999999998876544
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=298.58 Aligned_cols=326 Identities=16% Similarity=0.144 Sum_probs=234.4
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
|+.. ++|+|+++|+.+++|+|++++++|| +|||.+|.||+|.+
T Consensus 10 g~~~-fr~~Q~~~i~~il~g~dvlv~~PTG---------~GKTl~y~lpal~~--------------------------- 52 (591)
T TIGR01389 10 GYDD-FRPGQEEIISHVLDGRDVLVVMPTG---------GGKSLCYQVPALLL--------------------------- 52 (591)
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------ccHhHHHHHHHHHc---------------------------
Confidence 7776 7999999999999999999999998 89999999999731
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
.| .+|||+||++|+.|.++.+..+.-. + ..+++.
T Consensus 53 -------~g----~~lVisPl~sL~~dq~~~l~~~gi~-----~-------~~~~s~----------------------- 86 (591)
T TIGR01389 53 -------KG----LTVVISPLISLMKDQVDQLRAAGVA-----A-------AYLNST----------------------- 86 (591)
T ss_pred -------CC----cEEEEcCCHHHHHHHHHHHHHcCCc-----E-------EEEeCC-----------------------
Confidence 11 3799999999999999998876321 1 011111
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHh-hhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIK-LYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lk-Lys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
.+ ..-....++ +.+ ...+||++||.+|....- ........|.++|||||
T Consensus 87 ---------------~~------~~~~~~~~~~l~~--~~~~il~~tpe~l~~~~~-------~~~l~~~~l~~iViDEa 136 (591)
T TIGR01389 87 ---------------LS------AKEQQDIEKALVN--GELKLLYVAPERLEQDYF-------LNMLQRIPIALVAVDEA 136 (591)
T ss_pred ---------------CC------HHHHHHHHHHHhC--CCCCEEEEChhHhcChHH-------HHHHhcCCCCEEEEeCC
Confidence 00 000001111 111 468999999999853211 01123568999999999
Q ss_pred hhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEE
Q 004428 492 DIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVK 566 (754)
Q Consensus 492 D~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vk 566 (754)
|.+.. |.| +..|.......|. .++|+||||.++.+..-+...+......+.
T Consensus 137 H~i~~--~g~~frp~y~~l~~l~~~~~~----------------------~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~ 192 (591)
T TIGR01389 137 HCVSQ--WGHDFRPEYQRLGSLAERFPQ----------------------VPRIALTATADAETRQDIRELLRLADANEF 192 (591)
T ss_pred ccccc--ccCccHHHHHHHHHHHHhCCC----------------------CCEEEEEeCCCHHHHHHHHHHcCCCCCCeE
Confidence 99873 543 2233333333343 459999999999987655555442221221
Q ss_pred EeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceE
Q 004428 567 LACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFC 646 (754)
Q Consensus 567 v~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~ 646 (754)
+.. .. .+.+ .|...... .+.. .++..+......++||||+|..++..|..+|...++++.
T Consensus 193 ~~~-----~~--r~nl--~~~v~~~~-------~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~ 252 (591)
T TIGR01389 193 ITS-----FD--RPNL--RFSVVKKN-------NKQK----FLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISAL 252 (591)
T ss_pred ecC-----CC--CCCc--EEEEEeCC-------CHHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEE
Confidence 110 00 1111 22222211 1222 233333333457899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEech
Q 004428 647 LLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSR 725 (754)
Q Consensus 647 ~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk 725 (754)
.+|+.+++.+|.++...|.+|+++|||+|+.+. +|+|+++|++||+|++|.+++.|.+++||+||.| .+.|+.+|+.
T Consensus 253 ~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~--~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~ 330 (591)
T TIGR01389 253 AYHAGLSNKVRAENQEDFLYDDVKVMVATNAFG--MGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSP 330 (591)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEEechhh--ccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCH
Confidence 999999999999999999999999999999988 9999999999999999999999999999999988 6789999999
Q ss_pred hcHHHHHHHhCc
Q 004428 726 FDMLRLERIVGS 737 (754)
Q Consensus 726 ~D~~~LErIVGt 737 (754)
.|...+.+++..
T Consensus 331 ~d~~~~~~~i~~ 342 (591)
T TIGR01389 331 ADIALLKRRIEQ 342 (591)
T ss_pred HHHHHHHHHHhc
Confidence 998777766643
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=296.72 Aligned_cols=338 Identities=11% Similarity=0.100 Sum_probs=236.2
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.|.++++++.+.+.+.+. |+.. ++|+|.++|+. +++++|++++++|| +|||.+|.|++++|+++.
T Consensus 2 ~~~~l~l~~~~~~~l~~~----g~~~-l~~~Q~~ai~~~~~~g~nvlv~apTG---------sGKT~~~~l~il~~l~~~ 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKER----GIEE-LYPPQAEALKSGVLEGKNLVLAIPTA---------SGKTLVAEIVMVNKLLRE 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhC----CCCC-CCHHHHHHHHHHHhCCCcEEEECCCC---------cHHHHHHHHHHHHHHHhc
Confidence 578899999999998874 8876 79999999985 89999999999998 899999999999998632
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.+++|+|+|||+||.|+++.+..+.... .+...
T Consensus 68 ----------------------------------~~~~l~l~P~~aLa~q~~~~~~~~~~~g--------~~v~~----- 100 (720)
T PRK00254 68 ----------------------------------GGKAVYLVPLKALAEEKYREFKDWEKLG--------LRVAM----- 100 (720)
T ss_pred ----------------------------------CCeEEEEeChHHHHHHHHHHHHHHhhcC--------CEEEE-----
Confidence 2589999999999999999988763211 01111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+.|+.+. ..+.+ ..+||||+||.++..++..
T Consensus 101 ----------------------------------~~Gd~~~--------~~~~~------~~~~IiV~Tpe~~~~ll~~- 131 (720)
T PRK00254 101 ----------------------------------TTGDYDS--------TDEWL------GKYDIIIATAEKFDSLLRH- 131 (720)
T ss_pred ----------------------------------EeCCCCC--------chhhh------ccCCEEEEcHHHHHHHHhC-
Confidence 1221110 01111 3589999999999888762
Q ss_pred hcccccCcccCCceeEEEEecchhhhhc-CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQ-NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQ-Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
...+++.|+++||||||.|... .-..+..++..+ +. ..|.+++|||++.
T Consensus 132 ------~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l---~~---------------------~~qiI~lSATl~n 181 (720)
T PRK00254 132 ------GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM---LG---------------------RAQILGLSATVGN 181 (720)
T ss_pred ------CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc---Cc---------------------CCcEEEEEccCCC
Confidence 2357999999999999999743 334566665543 22 2799999999962
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCccccccc--c-eeEEEEEeccCcccchhHHHH-HHHHHHHhHHhhhcCCCcEEEE
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLL--N-VRQIYERFNADSIAKADDARL-EYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~--~-I~Q~f~r~~~~s~~~~~d~Rf-~yF~~~iLp~l~~~~~~~tLIF 624 (754)
...+. .++... + +.+.+. .+.. . +.|.|..++... ..++ .... .++..+.. ..+++|||
T Consensus 182 -~~~la-~wl~~~---~-~~~~~r----pv~l~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~i~-~~~~vLVF 244 (720)
T PRK00254 182 -AEELA-EWLNAE---L-VVSDWR----PVKLRKGVFYQGFLFWEDGK-----IERFPNSWE-SLVYDAVK-KGKGALVF 244 (720)
T ss_pred -HHHHH-HHhCCc---c-ccCCCC----CCcceeeEecCCeeeccCcc-----hhcchHHHH-HHHHHHHH-hCCCEEEE
Confidence 23333 233211 1 111100 0000 0 112222222111 0111 0011 12222222 35789999
Q ss_pred ecchhcHHHHHHHHHhC---------------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccE
Q 004428 625 LSSYFEFVRLRNFLKSQ---------------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKM 671 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~---------------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~I 671 (754)
|+|+..+..+...|.+. ...++.+|+.+++.+|..+...|++|.++|
T Consensus 245 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~V 324 (720)
T PRK00254 245 VNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKV 324 (720)
T ss_pred EcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999998877666421 124788999999999999999999999999
Q ss_pred EEEcccccccCccccCCCCeEE-------EccCCCCCC-chhhhccccCCCC---CceEEEEechhc
Q 004428 672 ILYTERSHFYHRYKIRGIQNLI-------IYSLPERKE-FYPEIVNMLEGSH---NMTCTVLFSRFD 727 (754)
Q Consensus 672 LL~TErahffRr~dIkgV~~VI-------fY~lP~~pe-fY~erigrt~ra~---~g~~~~L~sk~D 727 (754)
||||+.++ +|++|+++..|| +|+.|..|. .|.||+||+||.+ .|.|+.+.+..+
T Consensus 325 LvaT~tLa--~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 325 ITATPTLS--AGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred EEeCcHHh--hhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999 999999999999 478887665 7999999999975 588888776544
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=291.08 Aligned_cols=331 Identities=12% Similarity=0.091 Sum_probs=224.7
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCc------cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCc
Q 004428 239 PKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYR------DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDL 312 (754)
Q Consensus 239 ~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~------Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~ 312 (754)
..+.+.|.+. .+|. +|++|+.+++.+.++. ++|.++.|| +|||.+|+++++..+.+
T Consensus 248 ~~~~~~~~~~---l~f~--lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TG---------SGKT~va~~~il~~~~~---- 309 (681)
T PRK10917 248 GELLKKFLAS---LPFE--LTGAQKRVVAEILADLASPKPMNRLLQGDVG---------SGKTVVAALAALAAIEA---- 309 (681)
T ss_pred hHHHHHHHHh---CCCC--CCHHHHHHHHHHHHhhhccCCceEEEECCCC---------CcHHHHHHHHHHHHHHc----
Confidence 4566666554 3663 7999999999998874 899999998 89999999999987631
Q ss_pred cccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccc
Q 004428 313 VTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEE 392 (754)
Q Consensus 313 V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~ 392 (754)
.++||||+|||+||.|+.+.+.++.+... + +..-..|+.
T Consensus 310 -------------------------------g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i------~v~ll~G~~--- 348 (681)
T PRK10917 310 -------------------------------GYQAALMAPTEILAEQHYENLKKLLEPLG-I------RVALLTGSL--- 348 (681)
T ss_pred -------------------------------CCeEEEEeccHHHHHHHHHHHHHHHhhcC-c------EEEEEcCCC---
Confidence 35799999999999999999999875421 1 111122222
Q ss_pred cCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCccccccccc--HHHHhhhcccCCCCEEEeCchhHHHHHhhhh
Q 004428 393 EDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFT--RKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470 (754)
Q Consensus 393 ~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~t--rk~lkLys~Fy~sDIIVASPlgLr~lI~~~e 470 (754)
+.. +..++-... ..+|||||||+.|...
T Consensus 349 --------------------------------------------~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~----- 378 (681)
T PRK10917 349 --------------------------------------------KGKERREILEAIAS-GEADIVIGTHALIQDD----- 378 (681)
T ss_pred --------------------------------------------CHHHHHHHHHHHhC-CCCCEEEchHHHhccc-----
Confidence 111 112221111 3599999999877432
Q ss_pred cccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHH
Q 004428 471 ENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEI 550 (754)
Q Consensus 471 ~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pei 550 (754)
..+..+.++||||||++-...+. .+.. .+ ...|+|+||||..|..
T Consensus 379 -------v~~~~l~lvVIDE~Hrfg~~qr~----~l~~---~~---------------------~~~~iL~~SATp~prt 423 (681)
T PRK10917 379 -------VEFHNLGLVIIDEQHRFGVEQRL----ALRE---KG---------------------ENPHVLVMTATPIPRT 423 (681)
T ss_pred -------chhcccceEEEechhhhhHHHHH----HHHh---cC---------------------CCCCEEEEeCCCCHHH
Confidence 23788999999999997532111 1111 11 1278999999998876
Q ss_pred HHHHHHhhcCCCceEEEeec-ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc--
Q 004428 551 NAFFNHHCANYQGKVKLACE-YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS-- 627 (754)
Q Consensus 551 nsL~~~~~~N~~G~Vkv~~~-~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S-- 627 (754)
.++.. .... .+.+... ..| ...|.+.+...+ . .+ +. ...+...+ ....+++||||.
T Consensus 424 l~~~~--~g~~--~~s~i~~~p~~-----r~~i~~~~~~~~--~----~~-~~---~~~i~~~~--~~g~q~~v~~~~ie 482 (681)
T PRK10917 424 LAMTA--YGDL--DVSVIDELPPG-----RKPITTVVIPDS--R----RD-EV---YERIREEI--AKGRQAYVVCPLIE 482 (681)
T ss_pred HHHHH--cCCC--ceEEEecCCCC-----CCCcEEEEeCcc--c----HH-HH---HHHHHHHH--HcCCcEEEEEcccc
Confidence 55442 1111 1111111 011 123444433211 1 11 11 11121122 245689999994
Q ss_pred ------hhcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 628 ------YFEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 628 ------y~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
+.....+...|++. ++.+..+|+.+++.+|.+++..|++|+++|||+|+++. +|+||++|+.||+|++|.
T Consensus 483 ~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie--~GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 483 ESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE--VGVDVPNATVMVIENAER 560 (681)
T ss_pred cccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee--eCcccCCCcEEEEeCCCC
Confidence 34456667777765 57899999999999999999999999999999999999 999999999999999998
Q ss_pred CCCchhh-hccccCCCC-CceEEEEec-h---hcHHHHHHHhC
Q 004428 700 RKEFYPE-IVNMLEGSH-NMTCTVLFS-R---FDMLRLERIVG 736 (754)
Q Consensus 700 ~pefY~e-rigrt~ra~-~g~~~~L~s-k---~D~~~LErIVG 736 (754)
....|.| |+||+||.+ .|.|+.+++ + ....+|+.+..
T Consensus 561 ~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 561 FGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred CCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 7655555 999999987 799999985 3 33455555443
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=281.55 Aligned_cols=344 Identities=12% Similarity=0.096 Sum_probs=234.9
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
+.|++++|++.+++.|.+. ++. ++|+|+++++.+.++++++++++|| +|||.++.+++++++..
T Consensus 1 ~~~~~~~l~~~~~~~~~~~----~~~--l~~~Q~~ai~~l~~~~nvlv~apTG---------SGKTl~a~lail~~l~~- 64 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGN----DFE--LYDHQRMAIEQLRKGENVIVSVPTA---------AGKTLIAYSAIYETFLA- 64 (674)
T ss_pred CcHhhcCCCHHHHHHHhhC----CCC--CCHHHHHHHHHHhcCCcEEEECCCC---------chHHHHHHHHHHHHHHh-
Confidence 3578899999999998774 553 6999999999999999999999998 89999999999998742
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
..++|+|+|||+||.|+.+.+.++..... +.....|
T Consensus 65 ----------------------------------~~k~v~i~P~raLa~q~~~~~~~l~~~g~--------~v~~~~G-- 100 (674)
T PRK01172 65 ----------------------------------GLKSIYIVPLRSLAMEKYEELSRLRSLGM--------RVKISIG-- 100 (674)
T ss_pred ----------------------------------CCcEEEEechHHHHHHHHHHHHHHhhcCC--------eEEEEeC--
Confidence 14789999999999999999987642211 1111112
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
+.++ ..+.+ ..+|||||||.++..++..
T Consensus 101 -------------------------------------~~~~--------~~~~~------~~~dIiv~Tpek~~~l~~~- 128 (674)
T PRK01172 101 -------------------------------------DYDD--------PPDFI------KRYDVVILTSEKADSLIHH- 128 (674)
T ss_pred -------------------------------------CCCC--------Chhhh------ccCCEEEECHHHHHHHHhC-
Confidence 1110 00111 2579999999999988862
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
+..+|.+|.++||||||.+....+. .+..++..+..++. -.|.|++|||++.
T Consensus 129 ------~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~---------------------~~riI~lSATl~n 181 (674)
T PRK01172 129 ------DPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP---------------------DARILALSATVSN 181 (674)
T ss_pred ------ChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc---------------------CCcEEEEeCccCC
Confidence 3457999999999999999865554 45555555443332 2789999999963
Q ss_pred HHHHHHHHhhcCCCceEEEeecccCcccccccce-----eEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEE
Q 004428 549 EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNV-----RQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIML 623 (754)
Q Consensus 549 einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I-----~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLI 623 (754)
...+.. ++.- . . +.... ..+...+ .+.+. +.. .|...-+..++.... ...+++||
T Consensus 182 -~~~la~-wl~~-~-~--~~~~~----r~vpl~~~i~~~~~~~~--~~~-------~~~~~~~~~~i~~~~-~~~~~vLV 241 (674)
T PRK01172 182 -ANELAQ-WLNA-S-L--IKSNF----RPVPLKLGILYRKRLIL--DGY-------ERSQVDINSLIKETV-NDGGQVLV 241 (674)
T ss_pred -HHHHHH-HhCC-C-c--cCCCC----CCCCeEEEEEecCeeee--ccc-------ccccccHHHHHHHHH-hCCCcEEE
Confidence 333332 2211 0 1 11110 0010010 11111 111 111111112222211 24578999
Q ss_pred EecchhcHHHHHHHHHhCC-------------------------CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 004428 624 FLSSYFEFVRLRNFLKSQN-------------------------ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERS 678 (754)
Q Consensus 624 Fv~Sy~d~vrlrn~Lk~~~-------------------------~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TEra 678 (754)
||++..++..+...|.+.. ..++.+|+.+++.+|..+...|++|.++|||||+.+
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~l 321 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTL 321 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchh
Confidence 9999999999999886531 135678999999999999999999999999999999
Q ss_pred cccCccccCCCCeEEEccCCCC---------CCchhhhccccCCCC---CceEEEEec-hhcHHHHHHHh
Q 004428 679 HFYHRYKIRGIQNLIIYSLPER---------KEFYPEIVNMLEGSH---NMTCTVLFS-RFDMLRLERIV 735 (754)
Q Consensus 679 hffRr~dIkgV~~VIfY~lP~~---------pefY~erigrt~ra~---~g~~~~L~s-k~D~~~LErIV 735 (754)
+ +|++|++. +||+++.|.+ +..|.||+||+||.+ .|.++++.. ..+...+++.+
T Consensus 322 a--~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 322 A--AGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred h--ccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 9 99999985 7888887643 334679999999987 466666543 33344455554
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=279.94 Aligned_cols=319 Identities=14% Similarity=0.096 Sum_probs=215.9
Q ss_pred CCCCCCCCHHHHHHhhhhhCCc------cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYR------DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKV 325 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~------Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~ 325 (754)
.+| . +|+.|+.+++.+++.. ++|.++.|| +|||.+|++++++.+.+
T Consensus 232 lpf-~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TG---------SGKT~va~l~il~~~~~----------------- 283 (630)
T TIGR00643 232 LPF-K-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVG---------SGKTLVAALAMLAAIEA----------------- 283 (630)
T ss_pred CCC-C-CCHHHHHHHHHHHHHhccCCCccEEEECCCC---------CcHHHHHHHHHHHHHHc-----------------
Confidence 377 3 7999999999998762 579999998 89999999999987731
Q ss_pred ccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhccc
Q 004428 326 SAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIR 405 (754)
Q Consensus 326 ~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~ 405 (754)
.++||||+|||+||.|+.+.+.++.+... + +..-..|+.
T Consensus 284 ------------------g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i------~v~lltg~~---------------- 322 (630)
T TIGR00643 284 ------------------GYQVALMAPTEILAEQHYNSLRNLLAPLG-I------EVALLTGSL---------------- 322 (630)
T ss_pred ------------------CCcEEEECCHHHHHHHHHHHHHHHhcccC-c------EEEEEecCC----------------
Confidence 25799999999999999999999865421 1 111222222
Q ss_pred ccccCCCCCCCCCCceeeccCCCCCcccccccccH--HHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCce
Q 004428 406 GTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTR--KSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSI 483 (754)
Q Consensus 406 n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~tr--k~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSI 483 (754)
+... ..+.-.. -..+||||+||..|... ..+..+
T Consensus 323 -------------------------------~~~~r~~~~~~i~-~g~~~IiVgT~~ll~~~------------~~~~~l 358 (630)
T TIGR00643 323 -------------------------------KGKRRKELLETIA-SGQIHLVVGTHALIQEK------------VEFKRL 358 (630)
T ss_pred -------------------------------CHHHHHHHHHHHh-CCCCCEEEecHHHHhcc------------cccccc
Confidence 1111 1111111 13689999999887532 136789
Q ss_pred eEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCc
Q 004428 484 EVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQG 563 (754)
Q Consensus 484 EiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G 563 (754)
.++||||||++-...+. .+.... +. ....|+|++|||..|....+.. . |
T Consensus 359 ~lvVIDEaH~fg~~qr~---~l~~~~---~~-------------------~~~~~~l~~SATp~prtl~l~~--~----~ 407 (630)
T TIGR00643 359 ALVIIDEQHRFGVEQRK---KLREKG---QG-------------------GFTPHVLVMSATPIPRTLALTV--Y----G 407 (630)
T ss_pred ceEEEechhhccHHHHH---HHHHhc---cc-------------------CCCCCEEEEeCCCCcHHHHHHh--c----C
Confidence 99999999997421111 122211 10 0136899999998886544432 1 2
Q ss_pred eEEEe--ec-ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch--------hc
Q 004428 564 KVKLA--CE-YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY--------FE 630 (754)
Q Consensus 564 ~Vkv~--~~-~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy--------~d 630 (754)
.+.+. .. ..| ...|.+.+.. ... + . .++..+.. ....+++||||.. ..
T Consensus 408 ~l~~~~i~~~p~~-----r~~i~~~~~~--~~~-------~-~----~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~ 468 (630)
T TIGR00643 408 DLDTSIIDELPPG-----RKPITTVLIK--HDE-------K-D----IVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKA 468 (630)
T ss_pred CcceeeeccCCCC-----CCceEEEEeC--cch-------H-H----HHHHHHHHHHHhCCcEEEEEccccccccchHHH
Confidence 22211 11 011 1234333322 111 1 1 22222222 2356899999975 33
Q ss_pred HHHHHHHHHh--CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh-h
Q 004428 631 FVRLRNFLKS--QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE-I 707 (754)
Q Consensus 631 ~vrlrn~Lk~--~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e-r 707 (754)
+..+...|++ .++.++.+|+.+++.+|.+++..|++|+.+|||+|+++. +|+||++|++||+|+.|.....|.| |
T Consensus 469 a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie--~GvDiP~v~~VIi~~~~r~gls~lhQ~ 546 (630)
T TIGR00643 469 AEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE--VGVDVPNATVMVIEDAERFGLSQLHQL 546 (630)
T ss_pred HHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee--cCcccCCCcEEEEeCCCcCCHHHHHHH
Confidence 4556666665 478899999999999999999999999999999999999 9999999999999999987655555 9
Q ss_pred ccccCCCC-CceEEEEe----chhcHHHHHHHh
Q 004428 708 VNMLEGSH-NMTCTVLF----SRFDMLRLERIV 735 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~----sk~D~~~LErIV 735 (754)
+||+||.+ .|.|+.++ +..+..+|+.+.
T Consensus 547 ~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~ 579 (630)
T TIGR00643 547 RGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMA 579 (630)
T ss_pred hhhcccCCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 99999987 79999998 344445555443
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=279.32 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=105.1
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---CCC----
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR---GIQ---- 690 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk---gV~---- 690 (754)
..++||||+|..+...|.+.|++.|+++..||+. |.++.+++..|..+...||||||+|+ ||+||+ +|.
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~--~~~rE~~ii~~ag~~g~VlVATdmAg--RGtDI~l~~~V~~~GG 548 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGLPHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAG--RGTDIKLEPGVAARGG 548 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCC--cHHHHHHHHHHcCCCCcEEEEccchh--cccCcCCccchhhcCC
Confidence 4679999999999999999999999999999997 55677777788777788999999999 999999 777
Q ss_pred -eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhh
Q 004428 691 -NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMV 744 (754)
Q Consensus 691 -~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~ 744 (754)
|||+|++|.++..|.||+|||||.| .|+|+.++|..|.+ =+..|..+..+|+
T Consensus 549 LhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l--~~~~~~~~~~~~~ 602 (656)
T PRK12898 549 LHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL--LQSFLGSRGLAIR 602 (656)
T ss_pred CEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH--HHhhhhHHHHHHH
Confidence 9999999999999999999999998 69999999987743 2445666655543
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=296.26 Aligned_cols=331 Identities=14% Similarity=0.125 Sum_probs=213.0
Q ss_pred ecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHH
Q 004428 278 SNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIA 357 (754)
Q Consensus 278 ~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA 357 (754)
+|+|| +|||.||.||+|+++++.... ++ + . . .. ...++||+|+|||+||
T Consensus 2 ~APTG---------SGKTLAA~LpaL~~Ll~~~~~---~~-~-------~-------~---~~-~~~~raLYISPLKALa 50 (1490)
T PRK09751 2 IAPTG---------SGKTLAAFLYALDRLFREGGE---DT-R-------E-------A---HK-RKTSRILYISPIKALG 50 (1490)
T ss_pred cCCCC---------cHHHHHHHHHHHHHHHhcccc---cc-c-------c-------c---cc-CCCCEEEEEeChHHHH
Confidence 57887 999999999999999864210 00 0 0 0 00 1247999999999999
Q ss_pred HHHHHHHHHhCCc-ccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccc
Q 004428 358 LNVVKRLIRLTPD-AHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGI 436 (754)
Q Consensus 358 ~qIv~~l~~L~~~-~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGi 436 (754)
.|+.+.|...... .. ...+ +|.. .+.--..+..|++
T Consensus 51 ~Dv~~~L~~pl~~i~~-----~~~~----~g~~--------------------------~~~i~V~vrtGDt-------- 87 (1490)
T PRK09751 51 TDVQRNLQIPLKGIAD-----ERRR----RGET--------------------------EVNLRVGIRTGDT-------- 87 (1490)
T ss_pred HHHHHHHHHHHHhhhh-----hhhh----cccc--------------------------cCceEEEEEECCC--------
Confidence 9999999763221 10 0011 2211 0001123444532
Q ss_pred cccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccC-CC
Q 004428 437 KFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRI-PS 514 (754)
Q Consensus 437 k~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~-Pk 514 (754)
.... ..++.. ..+||||+||.+|..+|.. + ....|++|++|||||+|.|+...+ .|+..+++.|..+ |.
T Consensus 88 ~~~e-R~rll~--~ppdILVTTPEsL~~LLts----k--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 88 PAQE-RSKLTR--NPPDILITTPESLYLMLTS----R--ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred CHHH-HHHHhc--CCCCEEEecHHHHHHHHhh----h--hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 1121 122222 3689999999999998862 1 234699999999999999995544 4777777665432 22
Q ss_pred CCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEecc-Cc
Q 004428 515 KQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNA-DS 593 (754)
Q Consensus 515 ~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~-~s 593 (754)
-.|+|+||||+++ ...+. +++... ..+.+...... . ...++ ++..+.. ..
T Consensus 159 ---------------------~~QrIgLSATI~n-~eevA-~~L~g~-~pv~Iv~~~~~---r-~~~l~-v~vp~~d~~~ 209 (1490)
T PRK09751 159 ---------------------SAQRIGLSATVRS-ASDVA-AFLGGD-RPVTVVNPPAM---R-HPQIR-IVVPVANMDD 209 (1490)
T ss_pred ---------------------CCeEEEEEeeCCC-HHHHH-HHhcCC-CCEEEECCCCC---c-ccceE-EEEecCchhh
Confidence 2799999999987 34444 454321 12333211100 0 11232 2221110 00
Q ss_pred ccc--------hhHHHH----HHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCC-------------------
Q 004428 594 IAK--------ADDARL----EYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQN------------------- 642 (754)
Q Consensus 594 ~~~--------~~d~Rf----~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------------- 642 (754)
... ....|. .+....++..+. ...+|||||+|...+.+|...|++..
T Consensus 210 ~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 287 (1490)
T PRK09751 210 VSSVASGTGEDSHAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFES 287 (1490)
T ss_pred ccccccccccccchhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhh
Confidence 000 000111 111122333332 24689999999999999999997631
Q ss_pred --------------CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 643 --------------ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 643 --------------~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
+.+...|+.+++.+|..+.+.|++|++++||||+.+. +|+||..|++||+|+.|.+...|.|||
T Consensus 288 ~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLE--LGIDIg~VDlVIq~gsP~sVas~LQRi 365 (1490)
T PRK09751 288 TSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLE--LGIDMGAVDLVIQVATPLSVASGLQRI 365 (1490)
T ss_pred ccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHH--ccCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 1246788999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccCCCCCceEEEEec
Q 004428 709 NMLEGSHNMTCTVLFS 724 (754)
Q Consensus 709 grt~ra~~g~~~~L~s 724 (754)
||+||...+.+.+++.
T Consensus 366 GRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 366 GRAGHQVGGVSKGLFF 381 (1490)
T ss_pred CCCCCCCCCccEEEEE
Confidence 9999875455554444
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=255.60 Aligned_cols=323 Identities=12% Similarity=0.115 Sum_probs=206.4
Q ss_pred cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccc
Q 004428 274 DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPL 353 (754)
Q Consensus 274 Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PT 353 (754)
||+.+++|| +|||.+|+++++.++.+. ...++||++||
T Consensus 1 ~vvi~apTG---------sGKT~~~~~~~l~~~~~~---------------------------------~~~~ii~v~P~ 38 (358)
T TIGR01587 1 LLVIEAPTG---------YGKTEAALLWALHSIKSQ---------------------------------KADRVIIALPT 38 (358)
T ss_pred CEEEEeCCC---------CCHHHHHHHHHHHHHhhC---------------------------------CCCeEEEEeeh
Confidence 789999998 899999999999876421 13589999999
Q ss_pred hhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCccc
Q 004428 354 KSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFS 433 (754)
Q Consensus 354 RelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~Fr 433 (754)
|+||.|+.+.+..+.+.. +...+.......+....+ ...+...+.
T Consensus 39 ~~L~~q~~~~l~~~f~~~--~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-------- 83 (358)
T TIGR01587 39 RATINAMYRRAKELFGSN--LGLLHSSSSFKRIKEMGD-------------------------SEEFEHLFP-------- 83 (358)
T ss_pred HHHHHHHHHHHHHHhCcc--cEEeeccHHHHHHhccCC-------------------------chhHHHHHH--------
Confidence 999999999999975321 000000000000000000 000000000
Q ss_pred ccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcc-cCCceeEEEEecchhhhhcCchHHHHHHHHhccC
Q 004428 434 IGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVD-YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRI 512 (754)
Q Consensus 434 iGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~d-fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~ 512 (754)
.+.+...+ ...++|+|+||..|...+...- +.+... ..-...++||||||.|+...|+++..++..+.
T Consensus 84 ---~~~~~~~~----~~~~~I~v~T~~~l~~~~~~~~--~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~-- 152 (358)
T TIGR01587 84 ---LYIHSNDK----LFLDPITVCTIDQVLKSVFGEF--GHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK-- 152 (358)
T ss_pred ---HHhhchhh----hhhCCeeeCCHHHHHHHHhccc--chHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--
Confidence 00011111 1347899999999988765211 001111 01223799999999999666777777776652
Q ss_pred CCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccC
Q 004428 513 PSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNAD 592 (754)
Q Consensus 513 Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~ 592 (754)
. ...|+|+||||++..+..++...+.... ...... .......+|.+..+...
T Consensus 153 -~--------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~ 204 (358)
T TIGR01587 153 -D--------------------NDVPILLMSATLPKFLKEYAEKIGYVEF---NEPLDL----KEERRFERHRFIKIESD 204 (358)
T ss_pred -H--------------------cCCCEEEEecCchHHHHHHHhcCCCccc---ccCCCC----ccccccccccceeeccc
Confidence 1 1279999999999877777665433210 000000 00000123333322211
Q ss_pred cccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCC--ceEeecCCCCHHHHHHH----HHHHhc
Q 004428 593 SIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA--SFCLLGDYTEPSDISRA----RVWFFE 666 (754)
Q Consensus 593 s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~--~f~~Ihey~sq~~r~ra----r~~F~~ 666 (754)
.. .+... +..++..+ ...+++||||++..++..+.++|++.+. .+..+|+.+++.+|.+. ++.|++
T Consensus 205 ~~-----~~~~~-l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~ 276 (358)
T TIGR01587 205 KV-----GEISS-LERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK 276 (358)
T ss_pred cc-----cCHHH-HHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC
Confidence 11 11111 11232222 2357999999999999999999998766 59999999999999875 889999
Q ss_pred CCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-----CceEEEEech
Q 004428 667 GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-----NMTCTVLFSR 725 (754)
Q Consensus 667 G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-----~g~~~~L~sk 725 (754)
|+.+|||+|+++. ||+|| ++..||+|..| ++.|.||+||+||.+ .|.+++++..
T Consensus 277 ~~~~ilvaT~~~~--~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 277 NEKFVIVATQVIE--ASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred CCCeEEEECcchh--ceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 9999999999999 99999 59999999888 678999999999976 2467776653
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=273.22 Aligned_cols=123 Identities=12% Similarity=0.046 Sum_probs=109.9
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc---CCCC---
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI---RGIQ--- 690 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI---kgV~--- 690 (754)
...++||||+|..+...|.+.|.+.|+++..||+.+.++++......++.| +||||||.|+ ||+|| ++|+
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAg--RG~DI~l~~~V~~~G 502 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAG--RGTDIKLGEGVHELG 502 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchh--cCcCCCccccccccc
Confidence 467899999999999999999999999999999999998887777777766 7999999999 99999 5999
Q ss_pred --eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 691 --NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 691 --~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|||+|++|.++..|.||+|||||.| .|+|+.++|..|.+. +..|.++..+|+.
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~--~~~~~~~~~~~~~ 558 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLL--KRFAPEELEKLKK 558 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHH--HhhccHHHHHHHH
Confidence 9999999999999999999999998 699999999877543 5578888777764
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-26 Score=256.17 Aligned_cols=306 Identities=10% Similarity=0.117 Sum_probs=209.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|+++++.++.+++.+.+++|| +|||.++++ +...++..
T Consensus 115 ~r~~Q~~av~~~l~~~~~il~apTG---------sGKT~i~~~-l~~~~~~~---------------------------- 156 (501)
T PHA02558 115 PHWYQYDAVYEGLKNNRRLLNLPTS---------AGKSLIQYL-LSRYYLEN---------------------------- 156 (501)
T ss_pred CCHHHHHHHHHHHhcCceEEEeCCC---------CCHHHHHHH-HHHHHHhc----------------------------
Confidence 7999999999999999999999998 899987654 22222211
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..+++|||||||+|+.|+.+.|.++..... ..
T Consensus 157 -----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~-------~~------------------------------------ 188 (501)
T PHA02558 157 -----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR-------EA------------------------------------ 188 (501)
T ss_pred -----CCCeEEEEECcHHHHHHHHHHHHHhccccc-------cc------------------------------------
Confidence 124899999999999999999998753210 00
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
...+++|... ..+.+|+||||.+|..... .++..+.++|+||||++...
T Consensus 189 --~~~i~~g~~~-------------------~~~~~I~VaT~qsl~~~~~----------~~~~~~~~iIvDEaH~~~~~ 237 (501)
T PHA02558 189 --MHKIYSGTAK-------------------DTDAPIVVSTWQSAVKQPK----------EWFDQFGMVIVDECHLFTGK 237 (501)
T ss_pred --eeEEecCccc-------------------CCCCCEEEeeHHHHhhchh----------hhccccCEEEEEchhcccch
Confidence 1122333110 0247999999999865321 25789999999999999854
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHH-HH-HHHhhcCCCceEEEeecc----
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEIN-AF-FNHHCANYQGKVKLACEY---- 571 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pein-sL-~~~~~~N~~G~Vkv~~~~---- 571 (754)
.| ..|+..+ |. -||.+.||||...... .+ +..+| |.+......
T Consensus 238 ~~---~~il~~~---~~---------------------~~~~lGLTATp~~~~~~~~~~~~~f----G~i~~~v~~~~li 286 (501)
T PHA02558 238 SL---TSIITKL---DN---------------------CKFKFGLTGSLRDGKANILQYVGLF----GDIFKPVTTSQLM 286 (501)
T ss_pred hH---HHHHHhh---hc---------------------cceEEEEeccCCCccccHHHHHHhh----CCceEEecHHHHH
Confidence 44 4455443 32 2799999999864321 11 11122 223221110
Q ss_pred -cCcccccccceeEEEEEeccCcc--------------cchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHH
Q 004428 572 -KGVLPKVLLNVRQIYERFNADSI--------------AKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRN 636 (754)
Q Consensus 572 -~g~i~~v~~~I~Q~f~r~~~~s~--------------~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn 636 (754)
.|.+. ...+..++.++..... ....+.|-.. +..++..+. ....++|||+.+......|..
T Consensus 287 ~~g~l~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~-I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~ 362 (501)
T PHA02558 287 EEGQVT--DLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW-IANLALKLA-KKGENTFVMFKYVEHGKPLYE 362 (501)
T ss_pred hCCCcC--CceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH-HHHHHHHHH-hcCCCEEEEEEEHHHHHHHHH
Confidence 12111 1122222222211100 0011223221 112222222 234678888888889999999
Q ss_pred HHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 637 FLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 637 ~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-ErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
.|++.++++..|||.+++.+|.+.+..|++|+..|||+| +++. +|+||++|++||++.+|.+...|.|++||++|.+
T Consensus 363 ~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~--eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 363 MLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS--TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec--cccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 999999999999999999999999999999999999999 9999 9999999999999999999999999999999986
Q ss_pred Cc
Q 004428 716 NM 717 (754)
Q Consensus 716 ~g 717 (754)
.+
T Consensus 441 ~~ 442 (501)
T PHA02558 441 GS 442 (501)
T ss_pred CC
Confidence 43
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=271.72 Aligned_cols=231 Identities=19% Similarity=0.233 Sum_probs=167.7
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch-hhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD-IILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWY 528 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD-~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~ 528 (754)
++.|+|+|||+|...|.. + -+|+.+.++|||||| +++. .+.+..++.. +...|
T Consensus 163 ~t~I~v~TpG~LL~~l~~-------d-~~Ls~~~~IIIDEAHERsLn--~DfLLg~Lk~lL~~rp--------------- 217 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQ-------D-RLLMQYDTIIIDEAHERSLN--IDFILGYLKELLPRRP--------------- 217 (1294)
T ss_pred CCCEEEEChHHHHHHHhc-------C-CccccCcEEEecCccccccc--cchHHHHHHHhhhcCC---------------
Confidence 589999999999998862 2 259999999999999 6773 3444433332 22222
Q ss_pred cccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHH
Q 004428 529 LDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKK 608 (754)
Q Consensus 529 L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~ 608 (754)
.+|+|+||||++++ . |.+++.|.+ .|.+. |. ...|++.|..+..... ......+...+..
T Consensus 218 -------dlKvILmSATid~e--~-fs~~F~~ap-vI~V~----Gr----~~pVei~y~p~~~~~~-~~~~d~l~~ll~~ 277 (1294)
T PRK11131 218 -------DLKVIITSATIDPE--R-FSRHFNNAP-IIEVS----GR----TYPVEVRYRPIVEEAD-DTERDQLQAIFDA 277 (1294)
T ss_pred -------CceEEEeeCCCCHH--H-HHHHcCCCC-EEEEc----Cc----cccceEEEeecccccc-hhhHHHHHHHHHH
Confidence 27999999999875 3 344444433 34432 21 1236666655432110 0011122222221
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc---eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS---FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~---f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~d 685 (754)
+..+.....+.+|||+|+..+...+.+.|++.++. +..+|+.+++.++.++... .|..+|||+|++|. ||++
T Consensus 278 -V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAE--tSIT 352 (1294)
T PRK11131 278 -VDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAE--TSLT 352 (1294)
T ss_pred -HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHh--hccc
Confidence 22233345688999999999999999999998765 6789999999999998775 58899999999999 9999
Q ss_pred cCCCCeEEEcc---------------CCCCC---CchhhhccccCCCCCceEEEEechhcHHHH
Q 004428 686 IRGIQNLIIYS---------------LPERK---EFYPEIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 686 IkgV~~VIfY~---------------lP~~p---efY~erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
|+||++||+|+ ||..| ..|.||+||+||...|.|+.|||+.|...+
T Consensus 353 IpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 353 VPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR 416 (1294)
T ss_pred cCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhh
Confidence 99999999996 67666 579999999999999999999999887655
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=259.04 Aligned_cols=124 Identities=14% Similarity=0.049 Sum_probs=112.2
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC-------
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG------- 688 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg------- 688 (754)
....++||||+|..+...|.++|++.+++...||+. |.+|..++-.|..|...|+|||+.|. ||.||+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAg--RGtDI~l~~V~~~G 478 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAG--RGTDIKLEEVKELG 478 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEecccc--CCcCCCccchhhcC
Confidence 356789999999999999999999999999999997 99999999999999999999999999 9999998
Q ss_pred CCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 689 IQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 689 V~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
.-|||+|++|.++..|.|++||+||.| .|++..++|..|-+. ++.|..+..+|+.
T Consensus 479 Gl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~--~~~~~~~~~~~~~ 534 (745)
T TIGR00963 479 GLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM--RIFGGDRLEGLMR 534 (745)
T ss_pred CcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH--HhhhhHHHHHHHH
Confidence 559999999999999999999999998 699999999887543 4577777776654
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=253.73 Aligned_cols=122 Identities=12% Similarity=0.012 Sum_probs=108.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---------
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------- 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------- 687 (754)
...++||||+|......|...|++.|+++..||+.+.++++......|+.| .||||||+|+ ||.||+
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAg--RGtDI~l~~~v~~~G 498 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAG--RGTDIKLGKGVAELG 498 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccc--cccCCCCCccccccC
Confidence 457899999999999999999999999999999999998877776666666 7999999999 999999
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|+.+||+|++|....+ .||+|||||.| .|+|..++|..|.+. ++.|..+..+|+.
T Consensus 499 GL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~--~~~~~~~~~~~~~ 554 (762)
T TIGR03714 499 GLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLI--KRWSPSWLKKYYK 554 (762)
T ss_pred CeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhh--hhcchHHHHHHHH
Confidence 9999999999999877 99999999998 699999999877543 5678888877765
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=240.59 Aligned_cols=109 Identities=10% Similarity=0.050 Sum_probs=102.9
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC--------CCHHHHHHHHHHHhcCCccEEEEcccccccCccccC
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY--------TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey--------~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk 687 (754)
....++||||++...+..|..+|.+.++.+..+||. +++.+|.+++..|++|+.+|||+|+++. +|+||+
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~--eGldi~ 440 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAE--EGLDIP 440 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhh--cCCCcc
Confidence 356799999999999999999999999999999987 8999999999999999999999999999 999999
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~ 726 (754)
.+++||||++|.++.-|+||+||+||.+.|.++.|+++.
T Consensus 441 ~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 441 SVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKG 479 (773)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCC
Confidence 999999999999999999999999998889999998743
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=223.96 Aligned_cols=333 Identities=15% Similarity=0.165 Sum_probs=202.9
Q ss_pred HHHHhhhhhCCcc--EEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccccc
Q 004428 262 QRSFFSLCNSYRD--ILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLD 339 (754)
Q Consensus 262 Q~~~ip~i~~y~D--vl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RD 339 (754)
|.++|+.+.++.+ ++.+++|| +|||.+|++++|++
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTG---------sGKT~~~~~~~l~~---------------------------------- 38 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTG---------AGKTLAWLTPLLHG---------------------------------- 38 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCC---------CCHHHHHHHHHHHc----------------------------------
Confidence 8999999999885 67799998 89999999999841
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCC
Q 004428 340 RGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSD 419 (754)
Q Consensus 340 QGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D 419 (754)
..++|+|+||++||.|..+.+.++..... ..+..++.. +.+....+ .+. ...+
T Consensus 39 ----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~---~~~~~~v~~-~~g~~~~d-------~~~------------~~~~ 91 (357)
T TIGR03158 39 ----ENDTIALYPTNALIEDQTEAIKEFVDVFK---PERDVNLLH-VSKATLKD-------IKE------------YAND 91 (357)
T ss_pred ----CCCEEEEeChHHHHHHHHHHHHHHHHhcC---CCCCceEEE-ecCCchHH-------HHH------------hhhh
Confidence 02479999999999999999888752110 011122222 22221000 000 0001
Q ss_pred ceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccccc---CcccCCceeEEEEecchhhhh
Q 004428 420 YQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ---DVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 420 ~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~r---d~dfLSSIEiLVlDeAD~mLm 496 (754)
+...-.|.. . ..+.|+.++. ..++||+.+|--|..++...- +.+ ...|+.++.++|+||+|.+--
T Consensus 92 ~~~~~~g~~--~----~~~~r~~~~~----~~p~illT~p~~l~~llr~~~--~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 92 KVGSSKGEK--L----YNLLRNPIGT----STPIILLTNPDIFVYLTRFAY--IDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred hcccCccch--h----hhhHHHHHhc----CCCCEEEecHHHHHHHHhhhc--cCcccchhhhhcCCCEEEEecccccCc
Confidence 111112210 0 1112333332 368999999987776553110 111 123689999999999998652
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCce-E-EEeec---c
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGK-V-KLACE---Y 571 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~-V-kv~~~---~ 571 (754)
.--..+...+..+. +..+.. ...+.+++|||+++.+...+..... .|. + .+... .
T Consensus 160 ~~~~~~~~~l~~~~-------------~~~~~~-----~~~~~i~lSAT~~~~~~~~l~~~~~--~~~~~~~v~g~~~~~ 219 (357)
T TIGR03158 160 KQLVGMLFLLAYMQ-------------LIRFFE-----CRRKFVFLSATPDPALILRLQNAKQ--AGVKIAPIDGEKYQF 219 (357)
T ss_pred ccchhhhhhhHHHH-------------HHHhhh-----cCCcEEEEecCCCHHHHHHHHhccc--cCceeeeecCccccc
Confidence 11112221111111 111111 1258999999999988777654311 111 1 11111 0
Q ss_pred ----------cC-cccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh
Q 004428 572 ----------KG-VLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS 640 (754)
Q Consensus 572 ----------~g-~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~ 640 (754)
.+ .+..+.+.+.+.+.. ... ..+..+..+...++..+.....+++||||+|...+.++.+.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~ 294 (357)
T TIGR03158 220 PDNPELEADNKTQSFRPVLPPVELELIP-APD----FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQ 294 (357)
T ss_pred CCChhhhccccccccceeccceEEEEEe-CCc----hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhh
Confidence 00 011233466666654 211 11222333333333333333457899999999999999999998
Q ss_pred CC--CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 641 QN--ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 641 ~~--~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
.+ +.+..+|+.++|.+|.++ ++..|||+|++++ ||+||+.+ +|| |+ |.+++.|+||+||+|
T Consensus 295 ~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~--rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 295 QGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVD--VGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred hCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHh--cccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 64 578899999999998765 4889999999999 99999988 777 56 999999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=228.43 Aligned_cols=231 Identities=19% Similarity=0.217 Sum_probs=161.8
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch-hhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD-IILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWY 528 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD-~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~ 528 (754)
+..|+|+|||.|...+.. + -+|+.+.++|||||| ++|. -+.+..+++. +...|
T Consensus 156 ~T~I~~~TdGiLLr~l~~-------d-~~L~~~~~IIIDEaHERsL~--~D~LL~lLk~il~~rp--------------- 210 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQ-------D-RFLSRYDTIIIDEAHERSLN--IDFLLGYLKQLLPRRP--------------- 210 (1283)
T ss_pred CceeeeccccHHHHHhhh-------C-cccccCcEEEEcCcchhhcc--chhHHHHHHHHHhhCC---------------
Confidence 578999999999988862 2 269999999999999 6873 3445443333 22223
Q ss_pred cccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHH
Q 004428 529 LDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKK 608 (754)
Q Consensus 529 L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~ 608 (754)
-.|.|++|||++++ .|.+++.+.+ .|.+. |. ...|...|......... ...........
T Consensus 211 -------dLKlIlmSATld~~---~fa~~F~~ap-vI~V~----Gr----~~PVev~Y~~~~~~~~~-~~~~~~~~i~~- 269 (1283)
T TIGR01967 211 -------DLKIIITSATIDPE---RFSRHFNNAP-IIEVS----GR----TYPVEVRYRPLVEEQED-DDLDQLEAILD- 269 (1283)
T ss_pred -------CCeEEEEeCCcCHH---HHHHHhcCCC-EEEEC----CC----cccceeEEecccccccc-hhhhHHHHHHH-
Confidence 26899999999864 3444554432 33332 21 12355555443221100 00111111111
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCC---CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQN---ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~---~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~d 685 (754)
++-.+.....+.+|||+|+..+...+.+.|.+.+ +.+..+|+.+++.++.++...+ +..+|+|+|++|. +|++
T Consensus 270 ~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAE--tSLT 345 (1283)
T TIGR01967 270 AVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAE--TSLT 345 (1283)
T ss_pred HHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHH--hccc
Confidence 2222333356889999999999999999999864 4588999999999999984433 3479999999999 9999
Q ss_pred cCCCCeEEEccCCC---------------CC---CchhhhccccCCCCCceEEEEechhcHHHH
Q 004428 686 IRGIQNLIIYSLPE---------------RK---EFYPEIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 686 IkgV~~VIfY~lP~---------------~p---efY~erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
|+||++||++++|. .+ ..|.||.||+||.+.|.|+.|||+.|...+
T Consensus 346 IpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 346 VPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSR 409 (1283)
T ss_pred cCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhh
Confidence 99999999999654 33 369999999999999999999998876555
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=186.80 Aligned_cols=198 Identities=23% Similarity=0.326 Sum_probs=155.0
Q ss_pred cCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCC
Q 004428 232 YSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRD 311 (754)
Q Consensus 232 f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~ 311 (754)
|+++++++.+.+.+.+. |+.. |++.|+++++.+++++|++++++|| +|||.+|++|+++++.+.+.
T Consensus 1 ~~~~~~~~~i~~~l~~~----~~~~-~~~~Q~~~~~~~~~~~~~li~~~TG---------~GKT~~~~~~~l~~~~~~~~ 66 (203)
T cd00268 1 FEELGLSPELLRGIYAL----GFEK-PTPIQARAIPPLLSGRDVIGQAQTG---------SGKTAAFLIPILEKLDPSPK 66 (203)
T ss_pred CCcCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCcEEEECCCC---------CcHHHHHHHHHHHHHHhhcc
Confidence 67899999999988874 7765 8999999999999999999999998 89999999999999976521
Q ss_pred ccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCcc
Q 004428 312 LVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKE 391 (754)
Q Consensus 312 ~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~ 391 (754)
..+|+|||++||++||.|+.+.+..+..... + +..
T Consensus 67 ------------------------------~~~~~viii~p~~~L~~q~~~~~~~~~~~~~-~------~~~-------- 101 (203)
T cd00268 67 ------------------------------KDGPQALILAPTRELALQIAEVARKLGKHTN-L------KVV-------- 101 (203)
T ss_pred ------------------------------cCCceEEEEcCCHHHHHHHHHHHHHHhccCC-c------eEE--------
Confidence 1368999999999999999999998854321 0 111
Q ss_pred ccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhc
Q 004428 392 EEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEE 471 (754)
Q Consensus 392 ~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~ 471 (754)
.+.|+ .... +..+.+. .+++|||+||..|..++.+
T Consensus 102 -------------------------------~~~~~--------~~~~-~~~~~~~--~~~~iiv~T~~~l~~~l~~--- 136 (203)
T cd00268 102 -------------------------------VIYGG--------TSID-KQIRKLK--RGPHIVVATPGRLLDLLER--- 136 (203)
T ss_pred -------------------------------EEECC--------CCHH-HHHHHhc--CCCCEEEEChHHHHHHHHc---
Confidence 11111 1111 2233343 4799999999999998873
Q ss_pred ccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHH
Q 004428 472 NKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEI 550 (754)
Q Consensus 472 ~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pei 550 (754)
...++..++++|+||||.|. ++++.++..++..+ ++ .+|.+++|||+++.+
T Consensus 137 ----~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l---~~---------------------~~~~~~~SAT~~~~~ 188 (203)
T cd00268 137 ----GKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLL---PK---------------------DRQTLLFSATMPKEV 188 (203)
T ss_pred ----CCCChhhCCEEEEeChHHhhccChHHHHHHHHHhC---Cc---------------------ccEEEEEeccCCHHH
Confidence 23568999999999999997 55567777777665 32 389999999999999
Q ss_pred HHHHHHhhcCC
Q 004428 551 NAFFNHHCANY 561 (754)
Q Consensus 551 nsL~~~~~~N~ 561 (754)
..+.+.+|.++
T Consensus 189 ~~~~~~~~~~~ 199 (203)
T cd00268 189 RDLARKFLRNP 199 (203)
T ss_pred HHHHHHHCCCC
Confidence 99999998875
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=209.76 Aligned_cols=310 Identities=14% Similarity=0.110 Sum_probs=197.2
Q ss_pred CCHHHHHHhhhhhC---CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccc
Q 004428 258 HSSKQRSFFSLCNS---YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIG 334 (754)
Q Consensus 258 pTpiQ~~~ip~i~~---y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~ 334 (754)
+|+.|++++..+.+ +++++..+.|| +|||.+|+..+...+.
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TG---------SGKT~v~l~~i~~~l~--------------------------- 188 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTG---------SGKTEVYLQAIAEVLA--------------------------- 188 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCC---------ChHHHHHHHHHHHHHH---------------------------
Confidence 68999999999987 58999999998 8999999876554442
Q ss_pred cccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCC
Q 004428 335 DAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQK 414 (754)
Q Consensus 335 ~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~ 414 (754)
+| .+||||+||++||.|+++.|.+..+.. .....|+...
T Consensus 189 -----~g---~~vLvLvPt~~L~~Q~~~~l~~~fg~~----------v~~~~s~~s~----------------------- 227 (679)
T PRK05580 189 -----QG---KQALVLVPEIALTPQMLARFRARFGAP----------VAVLHSGLSD----------------------- 227 (679)
T ss_pred -----cC---CeEEEEeCcHHHHHHHHHHHHHHhCCC----------EEEEECCCCH-----------------------
Confidence 12 479999999999999999998754211 1111121100
Q ss_pred CCCCCceeeccCCCCCcccccccccHHH-HhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchh
Q 004428 415 SKPSDYQILFGGNNDDNFSIGIKFTRKS-IKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADI 493 (754)
Q Consensus 415 ~KP~D~~~lF~GN~dD~FriGik~trk~-lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~ 493 (754)
+-..+. .++.+ ..++|||+||.+|. ..++.+.++||||+|.
T Consensus 228 ----------------------~~r~~~~~~~~~--g~~~IVVgTrsal~--------------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 228 ----------------------GERLDEWRKAKR--GEAKVVIGARSALF--------------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred ----------------------HHHHHHHHHHHc--CCCCEEEeccHHhc--------------ccccCCCEEEEECCCc
Confidence 000011 11222 35899999998764 1377899999999997
Q ss_pred hhhcCch----HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEee
Q 004428 494 ILMQNWS----WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLAC 569 (754)
Q Consensus 494 mLmQNw~----hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~ 569 (754)
......+ |...|... |.- ..-.|.|++|||.+.+.-..+. .|+..+..
T Consensus 270 ~s~~~~~~p~y~~r~va~~----------------ra~------~~~~~~il~SATps~~s~~~~~------~g~~~~~~ 321 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVV----------------RAK------LENIPVVLGSATPSLESLANAQ------QGRYRLLR 321 (679)
T ss_pred cccccCcCCCCcHHHHHHH----------------Hhh------ccCCCEEEEcCCCCHHHHHHHh------ccceeEEE
Confidence 6522111 23333221 111 1126999999998876544432 24443321
Q ss_pred ---cccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch----------------
Q 004428 570 ---EYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY---------------- 628 (754)
Q Consensus 570 ---~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy---------------- 628 (754)
...+ ...+.+ ..++.... ........|-..++..+.+ ....++|||+|..
T Consensus 322 l~~r~~~---~~~p~v----~~id~~~~--~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 322 LTKRAGG---ARLPEV----EIIDMREL--LRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ecccccc---CCCCeE----EEEechhh--hhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 1111 111111 11221110 0000000111233333333 1345788888741
Q ss_pred --------------------------------------------hcHHHHHHHHHhC--CCceEeecCCCCH--HHHHHH
Q 004428 629 --------------------------------------------FEFVRLRNFLKSQ--NASFCLLGDYTEP--SDISRA 660 (754)
Q Consensus 629 --------------------------------------------~d~vrlrn~Lk~~--~~~f~~Ihey~sq--~~r~ra 660 (754)
....++...|++. ++++..+|+++++ .++.++
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~ 472 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQL 472 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHH
Confidence 2556888889886 8999999999986 568899
Q ss_pred HHHHhcCCccEEEEcccccccCccccCCCCeEE--EccCCCCC----------CchhhhccccCCCC-CceEEE
Q 004428 661 RVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI--IYSLPERK----------EFYPEIVNMLEGSH-NMTCTV 721 (754)
Q Consensus 661 r~~F~~G~~~ILL~TErahffRr~dIkgV~~VI--fY~lP~~p----------efY~erigrt~ra~-~g~~~~ 721 (754)
+..|.+|+..|||+|++++ ||+|+++|..|+ ++|.|-+. ..|.|++||+||.+ .|.|+.
T Consensus 473 l~~f~~g~~~ILVgT~~ia--kG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 473 LAQFARGEADILIGTQMLA--KGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHhcCCCCEEEEChhhc--cCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 9999999999999999999 999999999995 55656543 34999999999976 566663
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-19 Score=206.62 Aligned_cols=338 Identities=14% Similarity=0.126 Sum_probs=231.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKN 316 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~kn 316 (754)
|+|.+.+.+.. .|.+ |||.|.++||.+.+|+++|.+|+|| +|||.|-.||+||-|++...
T Consensus 8 l~~~v~~~~~~-----~~~~-~t~~Q~~a~~~i~~G~nvLiiAPTG---------sGKTeAAfLpil~~l~~~~~----- 67 (814)
T COG1201 8 LDPRVREWFKR-----KFTS-LTPPQRYAIPEIHSGENVLIIAPTG---------SGKTEAAFLPVINELLSLGK----- 67 (814)
T ss_pred cCHHHHHHHHH-----hcCC-CCHHHHHHHHHHhCCCceEEEcCCC---------CChHHHHHHHHHHHHHhccC-----
Confidence 56666666655 3666 8999999999999999999999999 89999999999999987510
Q ss_pred hhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcc
Q 004428 317 DTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKD 396 (754)
Q Consensus 317 n~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~ 396 (754)
. ....+..||.+.|.|.|+..|-..|...+...+ +.|
T Consensus 68 ------------------~----~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G-~~v-------------------- 104 (814)
T COG1201 68 ------------------G----KLEDGIYALYISPLKALNNDIRRRLEEPLRELG-IEV-------------------- 104 (814)
T ss_pred ------------------C----CCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC-Ccc--------------------
Confidence 0 112357899999999999999999988754221 111
Q ss_pred cchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccC
Q 004428 397 DDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQD 476 (754)
Q Consensus 397 ~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd 476 (754)
++-.|.+.+.+| +++++ .-+||+|-||--|--++... +-
T Consensus 105 -------------------------~vRhGDT~~~er------~r~~~-----~PPdILiTTPEsL~lll~~~-----~~ 143 (814)
T COG1201 105 -------------------------AVRHGDTPQSEK------QKMLK-----NPPHILITTPESLAILLNSP-----KF 143 (814)
T ss_pred -------------------------ceecCCCChHHh------hhccC-----CCCcEEEeChhHHHHHhcCH-----HH
Confidence 111222222211 22232 45999999999999988631 23
Q ss_pred cccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHH
Q 004428 477 VDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 477 ~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~ 555 (754)
-.+|+.|..+||||.+.|..-- --||.--++-|..+ .| -=|.|.+|||..|... ..
T Consensus 144 r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l-----------------~~----~~qRIGLSATV~~~~~--va 200 (814)
T COG1201 144 RELLRDVRYVIVDEIHALAESKRGVQLALSLERLREL-----------------AG----DFQRIGLSATVGPPEE--VA 200 (814)
T ss_pred HHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhh-----------------Cc----ccEEEeehhccCCHHH--HH
Confidence 3479999999999999987321 12343333333221 11 2599999999985532 23
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR 635 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr 635 (754)
+|+.-..+.+.|.....+ .+..- =...+....... +.=..+-...|...+. ....||||+||.+...+|.
T Consensus 201 rfL~g~~~~~~Iv~~~~~------k~~~i-~v~~p~~~~~~~-~~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~ 270 (814)
T COG1201 201 KFLVGFGDPCEIVDVSAA------KKLEI-KVISPVEDLIYD-EELWAALYERIAELVK--KHRTTLIFTNTRSGAERLA 270 (814)
T ss_pred HHhcCCCCceEEEEcccC------CcceE-EEEecCCccccc-cchhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHH
Confidence 455543223333322100 00100 000111110000 0000111122222222 2348999999999999999
Q ss_pred HHHHhCC-CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCC
Q 004428 636 NFLKSQN-ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEG 713 (754)
Q Consensus 636 n~Lk~~~-~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~r 713 (754)
..|++.+ .....=|+.++..+|..+=..|++|+.+.+|||==.- =|+||-+|..||.|+-|...--...||||.|.
T Consensus 271 ~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE--LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgH 347 (814)
T COG1201 271 FRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE--LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347 (814)
T ss_pred HHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchh--hccccCCceEEEEeCCcHHHHHHhHhcccccc
Confidence 9999987 8899999999999999999999999999999999999 99999999999999999999989999998873
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-18 Score=198.62 Aligned_cols=125 Identities=15% Similarity=0.051 Sum_probs=102.3
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC--------
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR-------- 687 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk-------- 687 (754)
....++||||.|......|..+|++.+++...||+...++++..+..+|+.|. |+|||++|. ||.||+
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAG--RGtDI~Lggn~~~~ 517 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAG--RGTDIVLGGSLAAD 517 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCcc--CCcceecCCchhhh
Confidence 35678999999999999999999999999999999999999999999999994 999999999 999998
Q ss_pred ------------------------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhC
Q 004428 688 ------------------------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 688 ------------------------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVG 736 (754)
|==|||--..|++--.=..+-||.||-|+ |++.-+.|-.|-+ =|+.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l--~~~f~ 595 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL--MRIFA 595 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH--HHHhC
Confidence 34477777777654444444577888774 7777777766633 25688
Q ss_pred chHHHHhhhc
Q 004428 737 SAHAKKMVKS 746 (754)
Q Consensus 737 t~ra~~m~~s 746 (754)
.++..+|+..
T Consensus 596 ~~~~~~~~~~ 605 (896)
T PRK13104 596 SERVASMMRR 605 (896)
T ss_pred hHHHHHHHHH
Confidence 8888888753
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-17 Score=190.71 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=96.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCccccC--------
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRYKIR-------- 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~dIk-------- 687 (754)
...++||-+.|-..-..|.+.|++.+++...++.-.. ++...+- =..|+ -.|.|||-.|. ||-||+
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~ii-a~AG~~g~VTIATNmAG--RGTDIkl~~~v~~~ 641 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEII-AGAGKLGAVTVATNMAG--RGTDIKLDEEAVAV 641 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHH-HhcCCCCcEEEeecccc--CCcccccCchHHhc
Confidence 4468999999999999999999999999888887432 3222221 13465 58999999999 999997
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|==|||--..|++.-.-..+.||+||-| .|++.-++|-.|-+ =|+.|..+..+|+.
T Consensus 642 GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL--~~~f~~~~i~~~~~ 698 (970)
T PRK12899 642 GGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL--MRLFASPKLNTLIR 698 (970)
T ss_pred CCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH--HHHhCcHHHHHHHH
Confidence 4559999999999888888899999988 58888888877633 25588888887765
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=197.05 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=94.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHHhcC--CccEEEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLK-SQNASFCLLGDYTEPSDISRARVWFFEG--KRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk-~~~~~f~~Ihey~sq~~r~rar~~F~~G--~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
...++||||++...+..|...|+ ..|+.++.|||.+++.+|.++...|+++ .++|||+||++. ||+++..++|||
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs--eGlNlq~a~~VI 569 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS--EGRNFQFASHLV 569 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc--cCCCcccccEEE
Confidence 46799999999999999999994 6799999999999999999999999985 599999999999 999999999999
Q ss_pred EccCCCCCCchhhhccccCCCC-CceE
Q 004428 694 IYSLPERKEFYPEIVNMLEGSH-NMTC 719 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~-~g~~ 719 (754)
|||+|.+|+.|.|||||++|.| .+.|
T Consensus 570 nfDlP~nP~~~eQRIGR~~RiGQ~~~V 596 (956)
T PRK04914 570 LFDLPFNPDLLEQRIGRLDRIGQKHDI 596 (956)
T ss_pred EecCCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999988 3443
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=156.96 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=126.2
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
||.|.++++.+.+++|++..+.|| +|||.+|++++++++.+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptG---------sGKT~~~~~~~l~~~~~~----------------------------- 42 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTG---------SGKTLAYILPALNRLQEG----------------------------- 42 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTT---------SSHHHHHHHHHHHHHHTT-----------------------------
T ss_pred CHHHHHHHHHHHcCCCEEEECCCC---------CccHHHHHHHHHhhhccC-----------------------------
Confidence 799999999999999999999998 899999999999999754
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCC
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPS 418 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~ 418 (754)
...++||++||++||.|+.+.+..+..... .+....+|+.
T Consensus 43 ----~~~~~lii~P~~~l~~q~~~~~~~~~~~~~-------~~~~~~~~~~----------------------------- 82 (169)
T PF00270_consen 43 ----KDARVLIIVPTRALAEQQFERLRKFFSNTN-------VRVVLLHGGQ----------------------------- 82 (169)
T ss_dssp ----SSSEEEEEESSHHHHHHHHHHHHHHTTTTT-------SSEEEESTTS-----------------------------
T ss_pred ----CCceEEEEeecccccccccccccccccccc-------cccccccccc-----------------------------
Confidence 124899999999999999999998865421 1111122221
Q ss_pred CceeeccCCCCCccccccccc-HHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh-
Q 004428 419 DYQILFGGNNDDNFSIGIKFT-RKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM- 496 (754)
Q Consensus 419 D~~~lF~GN~dD~FriGik~t-rk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm- 496 (754)
... .....+ . ..++|||+||..|..++.. ... +++++.++|+||+|.+..
T Consensus 83 ------------------~~~~~~~~~~-~--~~~~ilv~T~~~l~~~~~~------~~~-~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 83 ------------------SISEDQREVL-S--NQADILVTTPEQLLDLISN------GKI-NISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp ------------------CHHHHHHHHH-H--TTSSEEEEEHHHHHHHHHT------TSS-TGTTESEEEEETHHHHHHT
T ss_pred ------------------cccccccccc-c--ccccccccCcchhhccccc------ccc-ccccceeeccCcccccccc
Confidence 111 111122 1 4699999999999999873 123 456699999999999985
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
+.+..+..|+..+...+. .|.+++|||+++.++.|
T Consensus 135 ~~~~~~~~i~~~~~~~~~----------------------~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 135 TFRAMLKSILRRLKRFKN----------------------IQIILLSATLPSNVEKL 169 (169)
T ss_dssp THHHHHHHHHHHSHTTTT----------------------SEEEEEESSSTHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCC----------------------CcEEEEeeCCChhHhhC
Confidence 557778888887654432 57999999999887754
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-16 Score=179.83 Aligned_cols=335 Identities=14% Similarity=0.139 Sum_probs=229.2
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 243 KHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 243 ~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
..+...+ |+.. .-|-|+++|..+++++|+++.=+|| .||-..|-||+|=-
T Consensus 7 ~~L~~~f---Gy~~-FR~gQ~evI~~~l~g~d~lvvmPTG---------gGKSlCyQiPAll~----------------- 56 (590)
T COG0514 7 QVLKQVF---GYAS-FRPGQQEIIDALLSGKDTLVVMPTG---------GGKSLCYQIPALLL----------------- 56 (590)
T ss_pred HHHHHHh---Cccc-cCCCHHHHHHHHHcCCcEEEEccCC---------CCcchHhhhHHHhc-----------------
Confidence 4455554 6665 3578999999999999999999998 78999999998521
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
.| -+||+.|.-.|-..=|..+...+-..- |--...
T Consensus 57 -----------------~G----~TLVVSPLiSLM~DQV~~l~~~Gi~A~-------------~lnS~l----------- 91 (590)
T COG0514 57 -----------------EG----LTLVVSPLISLMKDQVDQLEAAGIRAA-------------YLNSTL----------- 91 (590)
T ss_pred -----------------CC----CEEEECchHHHHHHHHHHHHHcCceee-------------hhhccc-----------
Confidence 24 269999999998888888887642110 100000
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCc
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSS 482 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSS 482 (754)
..+.++.+ ..++. ...-+|+.-||=||..--= ....--..
T Consensus 92 -------------~~~e~~~v----------------~~~l~----~g~~klLyisPErl~~~~f-------~~~L~~~~ 131 (590)
T COG0514 92 -------------SREERQQV----------------LNQLK----SGQLKLLYISPERLMSPRF-------LELLKRLP 131 (590)
T ss_pred -------------CHHHHHHH----------------HHHHh----cCceeEEEECchhhcChHH-------HHHHHhCC
Confidence 00000000 01121 1236899999999875200 01111346
Q ss_pred eeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHH-
Q 004428 483 IEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNH- 556 (754)
Q Consensus 483 IEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~- 556 (754)
|-++||||||-+. .|.| ...+-......|. =-.|.|+||-+|.+..-+..
T Consensus 132 i~l~vIDEAHCiS--qWGhdFRP~Y~~lg~l~~~~~~----------------------~p~~AlTATA~~~v~~DI~~~ 187 (590)
T COG0514 132 ISLVAIDEAHCIS--QWGHDFRPDYRRLGRLRAGLPN----------------------PPVLALTATATPRVRDDIREQ 187 (590)
T ss_pred CceEEechHHHHh--hcCCccCHhHHHHHHHHhhCCC----------------------CCEEEEeCCCChHHHHHHHHH
Confidence 7899999999877 3754 3333333322331 24799999999997755444
Q ss_pred hhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHH
Q 004428 557 HCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRN 636 (754)
Q Consensus 557 ~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn 636 (754)
.+.+.+..++.... -+.+++.+.... ..-.++. |+.. +.....+..||||.|..++.+|..
T Consensus 188 L~l~~~~~~~~sfd-----------RpNi~~~v~~~~---~~~~q~~-fi~~----~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 188 LGLQDANIFRGSFD-----------RPNLALKVVEKG---EPSDQLA-FLAT----VLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred hcCCCcceEEecCC-----------Cchhhhhhhhcc---cHHHHHH-HHHh----hccccCCCeEEEEeeHHhHHHHHH
Confidence 33343222222111 111222222110 1122332 3332 123345678999999999999999
Q ss_pred HHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-
Q 004428 637 FLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH- 715 (754)
Q Consensus 637 ~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~- 715 (754)
+|..+|+++..-|+.++..+|.+..++|.+++.+|||||=-|. =|+|-++|+.||+|++|.+.+-|..=+||.||.|
T Consensus 249 ~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFG--MGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 249 WLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFG--MGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred HHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc--CccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999999999998766 9999999999999999999999999999999998
Q ss_pred CceEEEEechhcHHHHHHHhCc
Q 004428 716 NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 716 ~g~~~~L~sk~D~~~LErIVGt 737 (754)
..-|+.||++.|..-++.+.-.
T Consensus 327 ~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 327 PAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred cceEEEeeccccHHHHHHHHHh
Confidence 5789999999997666555444
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-16 Score=177.37 Aligned_cols=89 Identities=8% Similarity=-0.000 Sum_probs=76.2
Q ss_pred HHHHHHHHHhC--CCceEeecCCCCHHHH--HHHHHHHhcCCccEEEEcccccccCccccCCCCeEE--EccCCCC-CC-
Q 004428 631 FVRLRNFLKSQ--NASFCLLGDYTEPSDI--SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI--IYSLPER-KE- 702 (754)
Q Consensus 631 ~vrlrn~Lk~~--~~~f~~Ihey~sq~~r--~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI--fY~lP~~-pe- 702 (754)
..++...|++. ++++..+|.+++++++ .+.+..|.+|+..|||.|+.++ ||+|+++|..|+ ++|.+-+ |+
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~--kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIA--KGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccc--cCCCCCcccEEEEEcCcccccCccc
Confidence 58889999987 8999999999988776 8899999999999999999999 999999999994 7775443 33
Q ss_pred --------chhhhccccCCCC-CceEEE
Q 004428 703 --------FYPEIVNMLEGSH-NMTCTV 721 (754)
Q Consensus 703 --------fY~erigrt~ra~-~g~~~~ 721 (754)
.|.+++||+||++ .|.++.
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 4899999999976 576663
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=178.13 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
...++...+. .+.. ....++||||.|..+...|..+|++.+++...||+ .|.+|..++..|..|...|+|||
T Consensus 412 ~~~K~~aI~~----~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna--kq~eREa~Iia~Ag~~g~VtIAT 485 (830)
T PRK12904 412 EKEKFDAVVE----DIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQAGRPGAVTIAT 485 (830)
T ss_pred HHHHHHHHHH----HHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC--chHHHHHHHHHhcCCCceEEEec
Confidence 3456664433 3332 34568999999999999999999999999999999 49999999999999999999999
Q ss_pred ccccccCccccCC--------------------------------------CCeEEEccCCCCCCchhhhccccCCCCC-
Q 004428 676 ERSHFYHRYKIRG--------------------------------------IQNLIIYSLPERKEFYPEIVNMLEGSHN- 716 (754)
Q Consensus 676 ErahffRr~dIkg--------------------------------------V~~VIfY~lP~~pefY~erigrt~ra~~- 716 (754)
+.|. ||.||+= ==|||--..|++--.=-.+-||+||-|+
T Consensus 486 NmAG--RGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdp 563 (830)
T PRK12904 486 NMAG--RGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred cccc--CCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCC
Confidence 9999 9999873 3489988889877766777799999884
Q ss_pred ceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 717 MTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 717 g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|++.-+.|-.|-+. ++.|.++..+|+.
T Consensus 564 Gss~f~lSleD~l~--~~f~~~~~~~~~~ 590 (830)
T PRK12904 564 GSSRFYLSLEDDLM--RIFGSDRVKGMMD 590 (830)
T ss_pred CceeEEEEcCcHHH--HhhchHHHHHHHH
Confidence 77777777666332 4567777776654
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-15 Score=176.45 Aligned_cols=331 Identities=16% Similarity=0.136 Sum_probs=219.4
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.++.++.-|+|..+++.+..+++||.|++|| +|||....|=|++.+.+.
T Consensus 27 ~~~~el~~~qq~av~~~~~~~~N~li~aPTg---------sGKTlIA~lai~~~l~~~---------------------- 75 (766)
T COG1204 27 DGIDELFNPQQEAVEKGLLSDENVLISAPTG---------SGKTLIALLAILSTLLEG---------------------- 75 (766)
T ss_pred CChHHhhHHHHHHhhccccCCCcEEEEcCCC---------CchHHHHHHHHHHHHHhc----------------------
Confidence 4554455689999999999999999999998 899999999999999753
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
+-||+.|||||.||.++++.+.++....-+ ..
T Consensus 76 ------------~~k~vYivPlkALa~Ek~~~~~~~~~~Gir--------V~---------------------------- 107 (766)
T COG1204 76 ------------GGKVVYIVPLKALAEEKYEEFSRLEELGIR--------VG---------------------------- 107 (766)
T ss_pred ------------CCcEEEEeChHHHHHHHHHHhhhHHhcCCE--------EE----------------------------
Confidence 236899999999999999999966443321 11
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+..|+.++++ ..+ ...||||+||=.+=-++.+ ..+++..|.+|||||+
T Consensus 108 -----------~~TgD~~~~~--------~~l------~~~~ViVtT~EK~Dsl~R~-------~~~~~~~V~lvViDEi 155 (766)
T COG1204 108 -----------ISTGDYDLDD--------ERL------ARYDVIVTTPEKLDSLTRK-------RPSWIEEVDLVVIDEI 155 (766)
T ss_pred -----------EecCCcccch--------hhh------ccCCEEEEchHHhhHhhhc-------CcchhhcccEEEEeee
Confidence 1122222211 111 3689999999998777652 3447889999999999
Q ss_pred hhhhhc--CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhhcCCCceEEE
Q 004428 492 DIILMQ--NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 492 D~mLmQ--Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~~N~~G~Vkv 567 (754)
|.+..- .| -++.|...+ |.-.. .=|.+-+|||++ .++-.+.+- ....+.++-
T Consensus 156 H~l~d~~RG~-~lE~iv~r~---------------~~~~~------~~rivgLSATlpN~~evA~wL~a--~~~~~~~rp 211 (766)
T COG1204 156 HLLGDRTRGP-VLESIVARM---------------RRLNE------LIRIVGLSATLPNAEEVADWLNA--KLVESDWRP 211 (766)
T ss_pred eecCCcccCc-eehhHHHHH---------------HhhCc------ceEEEEEeeecCCHHHHHHHhCC--cccccCCCC
Confidence 998743 22 244444332 21111 137899999997 233333221 111111111
Q ss_pred eecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHh-------
Q 004428 568 ACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKS------- 640 (754)
Q Consensus 568 ~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~------- 640 (754)
.+-..+ ....|.|.-.....+ ..+..+-+.....++..+. ..+++||||+|.......++.|..
T Consensus 212 ~~l~~~------v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~ 282 (766)
T COG1204 212 VPLRRG------VPYVGAFLGADGKKK-TWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLS 282 (766)
T ss_pred cccccC------CccceEEEEecCccc-cccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCC
Confidence 111111 124455555443322 2222333333344555443 467999999999999999998873
Q ss_pred --C------CC-c---------------------eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC--
Q 004428 641 --Q------NA-S---------------------FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG-- 688 (754)
Q Consensus 641 --~------~~-~---------------------f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg-- 688 (754)
. +. + ++.=|..++..+|.-.=..|+.|.++||++|=-++ .|-..+.
T Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA--~GVNLPA~~ 360 (766)
T COG1204 283 DDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLA--AGVNLPART 360 (766)
T ss_pred hhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHh--hhcCCcceE
Confidence 0 01 1 11236778889999999999999999999999998 9988776
Q ss_pred --CCeEEEcc-----CCCCCCchhhhccccCCCC---CceEEEEe-chhcH
Q 004428 689 --IQNLIIYS-----LPERKEFYPEIVNMLEGSH---NMTCTVLF-SRFDM 728 (754)
Q Consensus 689 --V~~VIfY~-----lP~~pefY~erigrt~ra~---~g~~~~L~-sk~D~ 728 (754)
|+....|+ -|-++-.|..|.||.||.+ .|-++.+. +.++.
T Consensus 361 VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~ 411 (766)
T COG1204 361 VIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDEL 411 (766)
T ss_pred EEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccch
Confidence 55666788 7778888999999999987 34444433 44443
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-14 Score=157.33 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=100.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceE--eec-------CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFC--LLG-------DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~--~Ih-------ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk 687 (754)
...++|||+.-..-+..|.++|.+.+.+.. -|. ..|+|++....+..|+.|+.+|||||-++- -|+||+
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgE--EGLDIp 442 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGE--EGLDIP 442 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccc--ccCCCC
Confidence 457999999999999999999999988773 232 459999999999999999999999999999 999999
Q ss_pred CCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechh
Q 004428 688 GIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 688 gV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~ 726 (754)
.|+.||||++=.++.=++.|.|||||...|.+++|+++.
T Consensus 443 ~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 443 EVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred cccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 999999999999999999999999999999999999977
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-15 Score=173.01 Aligned_cols=124 Identities=13% Similarity=0.034 Sum_probs=104.8
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---------
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------- 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------- 687 (754)
...++||||.|......|..+|++.+++...||+...++++..+...|+.|. |+|||+.|. ||.||+
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAG--RGTDIkLggn~~~~~ 523 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAG--RGTDIVLGGNWNMEI 523 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcC--CCcceecCCchHHhh
Confidence 4578999999999999999999999999999999999999999999999998 999999999 999998
Q ss_pred ----------------------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCch
Q 004428 688 ----------------------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 688 ----------------------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ 738 (754)
|==|||--..|++--.=..+-||.||-|+ |++.-++|-.|-+. |+.|..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~--r~f~~~ 601 (908)
T PRK13107 524 EALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM--RIFASD 601 (908)
T ss_pred hhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH--HHhChH
Confidence 45588888888765555555688888774 77777777666432 668888
Q ss_pred HHHHhhhc
Q 004428 739 HAKKMVKS 746 (754)
Q Consensus 739 ra~~m~~s 746 (754)
+..+|+..
T Consensus 602 ~~~~~~~~ 609 (908)
T PRK13107 602 RVSGMMKK 609 (908)
T ss_pred HHHHHHHH
Confidence 88888753
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-15 Score=171.61 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=88.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CccEEEEcccccccCccccCCCCeEEEc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG-KRKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G-~~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
...++||||.+......+...| + +..|||.+++.+|.+.+..|++| .+++||+|+++. +|+||+++++||++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgd--eGIDlP~a~vvI~~ 567 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGD--TSIDLPEANVLIQI 567 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccc--cccCCCCCCEEEEe
Confidence 4579999998877766666665 3 34599999999999999999976 789999999999 99999999999999
Q ss_pred cCCC-CCCchhhhccccCCCC-CceE-------EEEechhc
Q 004428 696 SLPE-RKEFYPEIVNMLEGSH-NMTC-------TVLFSRFD 727 (754)
Q Consensus 696 ~lP~-~pefY~erigrt~ra~-~g~~-------~~L~sk~D 727 (754)
+.|. ++..|+||+||++|.+ .+.+ ++|+++..
T Consensus 568 s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 568 SSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred CCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9984 9999999999999986 3333 66776543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=171.68 Aligned_cols=333 Identities=16% Similarity=0.168 Sum_probs=194.2
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|+|+.+..+.....=++..+.|| +|||.|.++.+. +++..
T Consensus 287 p~p~Q~~~~~~~~~pgl~ileApTG---------sGKTEAAL~~A~-~l~~~---------------------------- 328 (878)
T PRK09694 287 PRQLQTLVDALPLQPGLTIIEAPTG---------SGKTEAALAYAW-RLIDQ---------------------------- 328 (878)
T ss_pred ChHHHHHHHhhccCCCeEEEEeCCC---------CCHHHHHHHHHH-HHHHh----------------------------
Confidence 8999998866544455577889998 899999655443 44421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCc---cccccccc-ccccccccCCCccccCcccchhhhcccccccCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPD---AHKVNVEH-IDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQ 413 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~---~~~~~v~n-k~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~ 413 (754)
| ...++++.+||+.+|.++.+.+.++... ...+.+.+ +.++...|
T Consensus 329 ---~-~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~--------------------------- 377 (878)
T PRK09694 329 ---G-LADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLF--------------------------- 377 (878)
T ss_pred ---C-CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhh---------------------------
Confidence 1 1347999999999999999998763211 00011111 11111111
Q ss_pred CCCCCCceeeccCC-CCC-cccccccccHHHHhhhc----ccCCCCEEEeCchhHHHHHhhhhcccccCcccCCc----e
Q 004428 414 KSKPSDYQILFGGN-NDD-NFSIGIKFTRKSIKLYN----DFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSS----I 483 (754)
Q Consensus 414 ~~KP~D~~~lF~GN-~dD-~FriGik~trk~lkLys----~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSS----I 483 (754)
..+..+. .++ .-.-++ ..-..++ .+.-++|+|+|+==|.+.+=. ....||.. =
T Consensus 378 -------~~~~~~~~~~~~~~~~~~----~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~------~kh~~lR~~~La~ 440 (878)
T PRK09694 378 -------QSLKSRAATEQGQEEAWV----QCCEWLSQSNKRVFLGQIGVCTIDQVLISVLP------VKHRFIRGFGLGR 440 (878)
T ss_pred -------hhhhcccccccccchhhh----HHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHc------cchHHHHHHhhcc
Confidence 1110000 000 000000 0001111 112389999999877764421 11223332 3
Q ss_pred eEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH-HHHHhhcCCC
Q 004428 484 EVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA-FFNHHCANYQ 562 (754)
Q Consensus 484 EiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins-L~~~~~~N~~ 562 (754)
.+|||||+|.+-.--+..+..+++.+.. +.-..|++|||+|+.+.. |...+ .
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L~~l~~-----------------------~g~~vIllSATLP~~~r~~L~~a~----~ 493 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVLKAQAQ-----------------------AGGSVILLSATLPATLKQKLLDTY----G 493 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHHHHh-----------------------cCCcEEEEeCCCCHHHHHHHHHHh----c
Confidence 5899999999853223455555554321 224589999999998764 44433 1
Q ss_pred ce--EEEeecccCc-------ccccc-------cceeEE--EEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 563 GK--VKLACEYKGV-------LPKVL-------LNVRQI--YERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 563 G~--Vkv~~~~~g~-------i~~v~-------~~I~Q~--f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|. +.....|+.+ ..... ...+.. +........ ...+. ++..++..+ ...+.+|||
T Consensus 494 ~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-~~~~~----~l~~i~~~~--~~g~~vLVf 566 (878)
T PRK09694 494 GHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADM-LPDLT----LLQRMIAAA--NAGAQVCLI 566 (878)
T ss_pred cccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccc-cCHHH----HHHHHHHHH--hcCCEEEEE
Confidence 11 1111111100 00000 001111 111100000 01111 122233222 235689999
Q ss_pred ecchhcHHHHHHHHHhCC---CceEeecCCCCHHHH----HHHHHHH-hcCCc---cEEEEcccccccCccccCCCCeEE
Q 004428 625 LSSYFEFVRLRNFLKSQN---ASFCLLGDYTEPSDI----SRARVWF-FEGKR---KMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~---~~f~~Ihey~sq~~r----~rar~~F-~~G~~---~ILL~TErahffRr~dIkgV~~VI 693 (754)
||+..++..+.+.|++.. ..+..+|+-+++.+| .+.++.| ++|+. +|||+|.++. +|+|| +++.||
T Consensus 567 ~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE--~GLDI-d~DvlI 643 (878)
T PRK09694 567 CNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE--QSLDL-DFDWLI 643 (878)
T ss_pred ECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh--heeec-CCCeEE
Confidence 999999999999999764 689999999999999 4578889 77764 7999999999 99999 799999
Q ss_pred EccCCCCCCchhhhccccCCCC
Q 004428 694 IYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~ 715 (754)
.+..| .+.|++|+||++|.+
T Consensus 644 tdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 644 TQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred ECCCC--HHHHHHHHhccCCCC
Confidence 99888 569999999999864
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=168.99 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=219.3
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|... +=+.|.+++-.+.+|+||+.+..|| +|||.+|+||||+|+++.+.
T Consensus 66 ~g~~~-lY~HQ~~A~~~~~~G~~vvVtTgTg---------SGKTe~FllPIld~~l~~~~-------------------- 115 (851)
T COG1205 66 AGIER-LYSHQVDALRLIREGRNVVVTTGTG---------SGKTESFLLPILDHLLRDPS-------------------- 115 (851)
T ss_pred hcccc-ccHHHHHHHHHHHCCCCEEEECCCC---------CchhHHHHHHHHHHHhhCcC--------------------
Confidence 36555 4469999999999999999999988 89999999999999987521
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
-++|+|-||+.||..=++.|.++...... +-+| ..|.|+.
T Consensus 116 -------------a~AL~lYPtnALa~DQ~~rl~~~~~~~~~-----~v~~-~~y~Gdt--------------------- 155 (851)
T COG1205 116 -------------ARALLLYPTNALANDQAERLRELISDLPG-----KVTF-GRYTGDT--------------------- 155 (851)
T ss_pred -------------ccEEEEechhhhHhhHHHHHHHHHHhCCC-----ccee-eeecCCC---------------------
Confidence 17899999999999999999988644320 1122 2343331
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+| +++ ..+|. ..+|||+.+|==|..+|-.. ..+-..+++.+++||+||+
T Consensus 156 ----~~---------------------~~r-~~~~~--~pp~IllTNpdMLh~~llr~---~~~~~~~~~~Lk~lVvDEl 204 (851)
T COG1205 156 ----PP---------------------EER-RAIIR--NPPDILLTNPDMLHYLLLRN---HDAWLWLLRNLKYLVVDEL 204 (851)
T ss_pred ----Ch---------------------HHH-HHHHh--CCCCEEEeCHHHHHHHhccC---cchHHHHHhcCcEEEEecc
Confidence 11 111 13444 47999999999888844321 2234456899999999999
Q ss_pred hhhhhcCchHHHHHHHHh----ccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 492 DIILMQNWSWLIEVVEQL----NRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~L----n~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
|..-=-+-.||--|+.-| +..+. -.|.|..|||..-. ...+..+..-.. .+-+
T Consensus 205 HtYrGv~GS~vA~llRRL~~~~~~~~~---------------------~~q~i~~SAT~~np-~e~~~~l~~~~f-~~~v 261 (851)
T COG1205 205 HTYRGVQGSEVALLLRRLLRRLRRYGS---------------------PLQIICTSATLANP-GEFAEELFGRDF-EVPV 261 (851)
T ss_pred eeccccchhHHHHHHHHHHHHHhccCC---------------------CceEEEEeccccCh-HHHHHHhcCCcc-eeec
Confidence 988522235666666554 32222 27999999998632 122222222111 1111
Q ss_pred eecccCcccccccceeEEEEEeccCcccch---hHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH----HHHHh
Q 004428 568 ACEYKGVLPKVLLNVRQIYERFNADSIAKA---DDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR----NFLKS 640 (754)
Q Consensus 568 ~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~---~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr----n~Lk~ 640 (754)
.. .| .+.=...|.+.+....... ..+.+ .....+...+. ...-++|+|+.|...+.++. ..+..
T Consensus 262 ~~--~g-----~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~ 332 (851)
T COG1205 262 DE--DG-----SPRGLRYFVRREPPIRELAESIRRSAL-AELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVR 332 (851)
T ss_pred cC--CC-----CCCCceEEEEeCCcchhhhhhcccchH-HHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhh
Confidence 11 11 1111222333222100000 00011 11122222222 24568999999999988884 44444
Q ss_pred CC----CceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC-CCCchhhhccccCCCC
Q 004428 641 QN----ASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE-RKEFYPEIVNMLEGSH 715 (754)
Q Consensus 641 ~~----~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~-~pefY~erigrt~ra~ 715 (754)
.+ .....-++.+...+|.+....|++|+..++++|-.++ =|+||-++.-||+++.|. ...-+.-+.||+||.+
T Consensus 333 ~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Ale--lgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 333 EGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALE--LGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG 410 (851)
T ss_pred cchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhh--hceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC
Confidence 44 5577788889999999999999999999999999877 999999999999999999 5678889999999877
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=160.57 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=100.6
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh---CCCceEeec--------CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS---QNASFCLLG--------DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~---~~~~f~~Ih--------ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~d 685 (754)
...++||||.+...+..|.++|.. -++....+- -.|+|++-...+.+|+.|+++|||||-++- -|+|
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~E--EGLD 489 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAE--EGLD 489 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchh--ccCC
Confidence 467999999999999999999983 233333333 358999999999999999999999999999 9999
Q ss_pred cCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHh
Q 004428 686 IRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 686 IkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIV 735 (754)
|..+..||=||.=.+|--.+.|.|| ||+.+|.|..|++.-.....|++-
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~t~~~~~~~E~~~ 538 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLTTGSEVIEFERNN 538 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEEcchhHHHHHHHH
Confidence 9999999999999999999999999 999999999999966666666554
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=169.81 Aligned_cols=121 Identities=7% Similarity=-0.026 Sum_probs=108.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||++...+.+|..+|...++++..+|+.+++.+|.+++..|+.|++.|||+|+.++ ||+++++|++||+|+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~--rGfdlp~v~lVii~d 522 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR--EGLDIPEVSLVAILD 522 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh--CCccccCCcEEEEeC
Confidence 356899999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred C-----CCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHhCchH
Q 004428 697 L-----PERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSAH 739 (754)
Q Consensus 697 l-----P~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~r 739 (754)
. |.++..|+||+||+||+..|.|+.+++..+...+..+-.+.+
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~ 570 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETER 570 (652)
T ss_pred CcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 5 789999999999999988899999988554444444444433
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=169.91 Aligned_cols=94 Identities=10% Similarity=0.127 Sum_probs=81.4
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC------CC---ceEeecCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCcccc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ------NA---SFCLLGDYTEPSDISRARVWFFEGKR-KMILYTERSHFYHRYKI 686 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~------~~---~f~~Ihey~sq~~r~rar~~F~~G~~-~ILL~TErahffRr~dI 686 (754)
..++|||||.|...+.++...|++. ++ .+..|++.++. +.+.+..|++|.. +|||++|.+. .|+|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~--TG~Dv 772 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLT--TGIDV 772 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccc--cCCCc
Confidence 4579999999999999888887653 22 34568888764 5679999999998 5999999999 99999
Q ss_pred CCCCeEEEccCCCCCCchhhhccccCCC
Q 004428 687 RGIQNLIIYSLPERKEFYPEIVNMLEGS 714 (754)
Q Consensus 687 kgV~~VIfY~lP~~pefY~erigrt~ra 714 (754)
+.|.+|||+.+|.++..|.++|||+.|-
T Consensus 773 P~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 773 PSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred ccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 9999999999999999999999998874
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-14 Score=164.77 Aligned_cols=122 Identities=7% Similarity=-0.016 Sum_probs=113.5
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||++...+.+|.++|.+.|+++..+|+.+++.+|.+++..|+.|++.|||+|+.++ ||+|+++|++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~--rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR--EGLDLPEVSLVAILD 518 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc--CCeeeCCCcEEEEeC
Confidence 356899999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred -----CCCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHhCchHH
Q 004428 697 -----LPERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSAHA 740 (754)
Q Consensus 697 -----lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~ra 740 (754)
.|.+...|+||+||+||+..|.|+.++...+...++.|-.+.+.
T Consensus 519 adifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~~~~~ 567 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEETERR 567 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHHHHhH
Confidence 89999999999999999989999999888887777777776443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-12 Score=153.13 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=65.4
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk 687 (754)
.+.....+++|||++||..-..+...|+. .++.+ +..... ..|.+.+..|+.|+..|||+|+.+. +|+||+
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~--EGVD~~ 742 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFW--EGVDFP 742 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceee--cccccC
Confidence 33344568899999999999999999976 24443 333333 5788899999999999999998866 999999
Q ss_pred CCC--eEEEccCCC
Q 004428 688 GIQ--NLIIYSLPE 699 (754)
Q Consensus 688 gV~--~VIfY~lP~ 699 (754)
|.. .||...||-
T Consensus 743 g~~l~~viI~~LPf 756 (850)
T TIGR01407 743 GNGLVCLVIPRLPF 756 (850)
T ss_pred CCceEEEEEeCCCC
Confidence 976 677888884
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=154.34 Aligned_cols=346 Identities=17% Similarity=0.158 Sum_probs=222.8
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhh
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTK 319 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~k 319 (754)
.+...+...+ |...+ -|-|.++|-.+++|+|++..-.|| .||-..|-||++ +
T Consensus 251 ~~~~~l~~~F---g~~~F-R~~Q~eaI~~~l~Gkd~fvlmpTG---------~GKSLCYQlPA~---l------------ 302 (941)
T KOG0351|consen 251 ELELLLKEVF---GHKGF-RPNQLEAINATLSGKDCFVLMPTG---------GGKSLCYQLPAL---L------------ 302 (941)
T ss_pred HHHHHHHHHh---ccccC-ChhHHHHHHHHHcCCceEEEeecC---------CceeeEeecccc---c------------
Confidence 4555666665 43333 368999999999999999999998 678889977763 1
Q ss_pred hhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccch
Q 004428 320 VAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDD 399 (754)
Q Consensus 320 l~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~ 399 (754)
..+-.||+.|...|-.--+..|.+..-.. -| ..++....+
T Consensus 303 -----------------------~~gitvVISPL~SLm~DQv~~L~~~~I~a---------~~--L~s~q~~~~------ 342 (941)
T KOG0351|consen 303 -----------------------LGGVTVVISPLISLMQDQVTHLSKKGIPA---------CF--LSSIQTAAE------ 342 (941)
T ss_pred -----------------------cCCceEEeccHHHHHHHHHHhhhhcCcce---------ee--ccccccHHH------
Confidence 11246999999999877776664432111 11 111111000
Q ss_pred hhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCccc
Q 004428 400 ASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDY 479 (754)
Q Consensus 400 ~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~df 479 (754)
+. .-|+.+=.|| ...+|+--||=.+.-... ..+-..-
T Consensus 343 -~~---------------~i~q~l~~~~----------------------~~ikilYvtPE~v~~~~~-----l~~~~~~ 379 (941)
T KOG0351|consen 343 -RL---------------AILQKLANGN----------------------PIIKILYVTPEKVVASEG-----LLESLAD 379 (941)
T ss_pred -HH---------------HHHHHHhCCC----------------------CeEEEEEeCHHHhhcccc-----hhhHHHh
Confidence 00 0011111111 134566666655432211 0011112
Q ss_pred CCc---eeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCcc-ccEEEEcCCCCHHHHHHHH
Q 004428 480 LSS---IEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFY-RQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 480 LSS---IEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~-RQTllFSAt~~peinsL~~ 555 (754)
|.. |-.+|||||+-.. .|.| ||.--..|.---..++- .=.|.++||-|+.++.=+-
T Consensus 380 L~~~~~lal~vIDEAHCVS--qWgH------------------dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi 439 (941)
T KOG0351|consen 380 LYARGLLALFVIDEAHCVS--QWGH------------------DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVI 439 (941)
T ss_pred ccCCCeeEEEEecHHHHhh--hhcc------------------cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHH
Confidence 555 9999999999887 4765 12111111111001111 3478999999999875444
Q ss_pred Hhh--cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHH
Q 004428 556 HHC--ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 556 ~~~--~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~v 632 (754)
+.+ .|+. .+.. +.. -.++ ++.|-.... .+.=+ .++-.+.. .....+||||.+..+++
T Consensus 440 ~~L~l~~~~---~~~~----sfn--R~NL---~yeV~~k~~---~~~~~-----~~~~~~~~~~~~~s~IIYC~sr~~ce 499 (941)
T KOG0351|consen 440 RSLGLRNPE---LFKS----SFN--RPNL---KYEVSPKTD---KDALL-----DILEESKLRHPDQSGIIYCLSRKECE 499 (941)
T ss_pred HHhCCCCcc---eecc----cCC--CCCc---eEEEEeccC---ccchH-----HHHHHhhhcCCCCCeEEEeCCcchHH
Confidence 433 2321 1111 001 1112 333332210 11111 12222322 34578999999999999
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 633 RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 633 rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
+|..+|.+.++++...|..++.++|.++-..|..++++|.+||=-|. =|+|-++|+-||+|+||.+-|-|..=+||.|
T Consensus 500 ~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFG--MGIdK~DVR~ViH~~lPks~E~YYQE~GRAG 577 (941)
T KOG0351|consen 500 QVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFG--MGIDKPDVRFVIHYSLPKSFEGYYQEAGRAG 577 (941)
T ss_pred HHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeecc--CCCCCCceeEEEECCCchhHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999996644 9999999999999999999999999999999
Q ss_pred CCC-CceEEEEechhcHHHHHHHhCch
Q 004428 713 GSH-NMTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 713 ra~-~g~~~~L~sk~D~~~LErIVGt~ 738 (754)
|.| -..|+.||+..|..+|.+.+-+.
T Consensus 578 RDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 578 RDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred cCCCcceeEEecchhHHHHHHHHHHcc
Confidence 998 46788888988988887665444
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=139.52 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=90.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL 697 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l 697 (754)
..++|||+++......+...|...++ +..|.+.+++.+|...++.|+.|..++|+.+.++- -|+||+++..+|.-.+
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~--EGvDiP~~~~~i~~~~ 359 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLD--EGVDIPDADVLIILRP 359 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeecc--ceecCCCCcEEEEeCC
Confidence 57999999999999999999999988 99999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCchhhhccccCCC
Q 004428 698 PERKEFYPEIVNMLEGS 714 (754)
Q Consensus 698 P~~pefY~erigrt~ra 714 (754)
..++-.|..++||.-|.
T Consensus 360 t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 360 TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCcHHHHHHHhhhhccC
Confidence 99999999999999884
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=155.36 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT 675 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T 675 (754)
.+.+++. |...+.. ....++||||+|.....+|.+.|++.+++...+|+...++++......++.|. |+|||
T Consensus 422 ~~~K~~a----l~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIAT 495 (796)
T PRK12906 422 LDSKFNA----VVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIAT 495 (796)
T ss_pred HHHHHHH----HHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEe
Confidence 3456653 3333432 35689999999999999999999999999999999988777777777777776 99999
Q ss_pred ccccccCccccC---CCC-----eEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 676 ERSHFYHRYKIR---GIQ-----NLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 676 ErahffRr~dIk---gV~-----~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
+.|. ||.||+ +|. |||+|++|.+...|.|++||+||.| .|++..++|..|-+. ++.|..+..+|+.
T Consensus 496 nmAG--RGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~--~~f~~~~~~~~~~ 570 (796)
T PRK12906 496 NMAG--RGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM--RRFGSDRVKAFLD 570 (796)
T ss_pred cccc--CCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHH--HhhCcHHHHHHHH
Confidence 9999 999996 899 9999999999999999999999998 699999999886432 5578888887774
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=143.83 Aligned_cols=343 Identities=17% Similarity=0.174 Sum_probs=216.2
Q ss_pred CHHHHHHhhhhh-CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCN-SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~-~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
..||..+||++. +-..+|.||+|| +|||.++.|-||+-+-+. +++- +--
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTG---------sGKT~la~L~ILr~ik~~------~~~~---------------~i~ 161 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTG---------SGKTVLAELCILRTIKEH------EEQG---------------DIA 161 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCC---------CCchHHHHHHHHHHHHhh------cccc---------------ccc
Confidence 469999999985 456999999999 899999999999887541 1100 000
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH-hCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR-LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~-L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
+ ..-|++.++|+|.||..+++.+-+ |.+-. +.| .++.|+
T Consensus 162 k----~~fKiVYIaPmKALa~Em~~~~~kkl~~~g--i~v-------~ELTGD--------------------------- 201 (1230)
T KOG0952|consen 162 K----DDFKIVYIAPMKALAAEMVDKFSKKLAPLG--ISV-------RELTGD--------------------------- 201 (1230)
T ss_pred c----CCceEEEEechHHHHHHHHHHHhhhccccc--ceE-------EEecCc---------------------------
Confidence 1 134899999999999999998875 44322 112 233332
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
+.+++.-+. .+||||.||=- .|++.+. -..+..|.+-|.+|||||.|.|-.
T Consensus 202 -------------------~ql~~tei~------~tqiiVTTPEK-wDvvTRk---~~~d~~l~~~V~LviIDEVHlLhd 252 (1230)
T KOG0952|consen 202 -------------------TQLTKTEIA------DTQIIVTTPEK-WDVVTRK---SVGDSALFSLVRLVIIDEVHLLHD 252 (1230)
T ss_pred -------------------chhhHHHHH------hcCEEEecccc-eeeeeee---eccchhhhhheeeEEeeeehhhcC
Confidence 123332232 48999999987 4555421 112467889999999999998876
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc-C-CCceEEEeecccCc
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA-N-YQGKVKLACEYKGV 574 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~-N-~~G~Vkv~~~~~g~ 574 (754)
.=-.-|+.|+..++.+-.. +-..=..+.+|||+| .+..++. +++ | +.|-..+...+
T Consensus 253 ~RGpvlEtiVaRtlr~ves-----------------sqs~IRivgLSATlP-N~eDvA~-fL~vn~~~glfsFd~~y--- 310 (1230)
T KOG0952|consen 253 DRGPVLETIVARTLRLVES-----------------SQSMIRIVGLSATLP-NYEDVAR-FLRVNPYAGLFSFDQRY--- 310 (1230)
T ss_pred cccchHHHHHHHHHHHHHh-----------------hhhheEEEEeeccCC-CHHHHHH-HhcCCCccceeeecccc---
Confidence 5456678887766533211 000122588999996 4555553 443 4 34443332221
Q ss_pred ccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC----CCce-----
Q 004428 575 LPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ----NASF----- 645 (754)
Q Consensus 575 i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~----~~~f----- 645 (754)
-..+++|.|+-..+.......+.--+-...+++..+. ...++||||++..+.++.++.|.+. |.+-
T Consensus 311 ---RPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~ 385 (1230)
T KOG0952|consen 311 ---RPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS 385 (1230)
T ss_pred ---cccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCC
Confidence 1345788887766541111111111111123433333 3568999999999999999999653 2222
Q ss_pred --------------EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC---------
Q 004428 646 --------------CLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE--------- 702 (754)
Q Consensus 646 --------------~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe--------- 702 (754)
+.=|..+.-++|.-.=..|..|.++||+||--++ -|-.++ ..+||--+-|.+--
T Consensus 386 ~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLA--wGVNLP-A~aViIKGT~~ydsskg~f~dlg 462 (1230)
T KOG0952|consen 386 PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLA--WGVNLP-AYAVIIKGTQVYDSSKGSFVDLG 462 (1230)
T ss_pred hhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceee--eccCCc-ceEEEecCCcccccccCceeeeh
Confidence 2234556778888888899999999999999988 777774 45666665553211
Q ss_pred --chhhhccccCCCC--CceEEEEechhcHHH
Q 004428 703 --FYPEIVNMLEGSH--NMTCTVLFSRFDMLR 730 (754)
Q Consensus 703 --fY~erigrt~ra~--~g~~~~L~sk~D~~~ 730 (754)
.-..+.||.||.. +..+.++.|..|.+.
T Consensus 463 ilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 463 ILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 1234568888865 334555677777643
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-12 Score=149.70 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=112.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---CCCeE-
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR---GIQNL- 692 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk---gV~~V- 692 (754)
...++||||+|......|.++|++.+++...||. .|.+|..++-.|..|...|+|||+.|+ ||.||+ +|.+|
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAG--RGtDIkl~~~V~~vG 672 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAG--RGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcC--CCCCcCCccchhhhC
Confidence 4679999999999999999999999999999996 899999999999999999999999999 999999 67655
Q ss_pred ----EEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 693 ----IIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 693 ----IfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|++..|.+...|.|++||+||.| .|++..++|..|.+. |..|..+..+|+.
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm--r~f~~~~i~~~~~ 728 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM--RLFGSDRVISVMD 728 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH--HhhCcHHHHHHHH
Confidence 99999999999999999999998 699999999887543 5578888888874
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=134.69 Aligned_cols=351 Identities=15% Similarity=0.175 Sum_probs=226.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhC-CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchh
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNS-YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDT 318 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~-y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~ 318 (754)
++.++|++.+ |+..+-||+|.+++-.+-. -+||++|-+|| .||...|-||+|-|=
T Consensus 6 ~VreaLKK~F---Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTG---------aGKSLCyQLPaL~~~------------ 61 (641)
T KOG0352|consen 6 KVREALKKLF---GHKKFKSRLQEQAINCIVKRKCDVYVSMPTG---------AGKSLCYQLPALVHG------------ 61 (641)
T ss_pred HHHHHHHHHh---CchhhcChHHHHHHHHHHhccCcEEEeccCC---------CchhhhhhchHHHhC------------
Confidence 4667787776 7767779999999988866 45999999998 789999999997542
Q ss_pred hhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhC-Cccc---ccccccccccccccCCCccccC
Q 004428 319 KVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLT-PDAH---KVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 319 kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~-~~~~---~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
| -.+|+.|.-.|...-+++|.+|- |-+. ++...-++|.+..-
T Consensus 62 ----------------------g----ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL-------- 107 (641)
T KOG0352|consen 62 ----------------------G----ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDL-------- 107 (641)
T ss_pred ----------------------C----eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHH--------
Confidence 2 24888999999888888988872 2111 11111122222100
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh-----HHHHHhhh
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN-----LHQKMTKA 469 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg-----Lr~lI~~~ 469 (754)
+..|| +-.|+--||-+ ..+++..-
T Consensus 108 ------------------~~ekp---------------------------------~~K~LYITPE~AAt~~FQ~lLn~L 136 (641)
T KOG0352|consen 108 ------------------AKEKP---------------------------------TIKMLYITPEGAATDGFQKLLNGL 136 (641)
T ss_pred ------------------HhcCC---------------------------------ceeEEEEchhhhhhhhHHHHHHHH
Confidence 11122 12233344433 23333210
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCchHH--HHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNWSWL--IEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv--~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
-+++ -+.++|+|||+-... |.|= .+-+. +.-+|.-|= . --.+.++||-+
T Consensus 137 ---~~r~-----~L~Y~vVDEAHCVSQ--WGHDFRPDYL~-------------LG~LRS~~~--~----vpwvALTATA~ 187 (641)
T KOG0352|consen 137 ---ANRD-----VLRYIVVDEAHCVSQ--WGHDFRPDYLT-------------LGSLRSVCP--G----VPWVALTATAN 187 (641)
T ss_pred ---hhhc-----eeeeEEechhhhHhh--hccccCcchhh-------------hhhHHhhCC--C----CceEEeecccC
Confidence 0122 356899999998763 8761 11110 011121111 1 12588999999
Q ss_pred HHHHHH-HHH-hhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHH---hhh--c-CCC
Q 004428 548 PEINAF-FNH-HCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPK---IKD--S-IQG 619 (754)
Q Consensus 548 peinsL-~~~-~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~---l~~--~-~~~ 619 (754)
+++..= +.. +++|+- -| +..+ .+. ...|+-+.-.+..+++-.-++-|..+-|-. ... . -.+
T Consensus 188 ~~VqEDi~~qL~L~~PV-Ai-FkTP---~FR------~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~G 256 (641)
T KOG0352|consen 188 AKVQEDIAFQLKLRNPV-AI-FKTP---TFR------DNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTG 256 (641)
T ss_pred hhHHHHHHHHHhhcCcH-Hh-ccCc---chh------hhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCc
Confidence 998753 322 345542 11 1111 000 011222111111111112222233333321 111 1 124
Q ss_pred cEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 620 GIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
=-||||.+...+.+++--|...||.+.+.|..+..++|+..-...++|+++|++||--+. -|.|=++|+-||++++|.
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFG--MGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFG--MGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccc--cccCCcceeEEEecCchh
Confidence 479999999999999999999999999999999999999999999999999999999876 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHH
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAK 741 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~ 741 (754)
+.--|-.-.||.||.| ...|+-.|++.|...|.=+|-.+.|.
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~ak 377 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAK 377 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHH
Confidence 9999999999999998 57899999999988886666555443
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=135.88 Aligned_cols=336 Identities=13% Similarity=0.121 Sum_probs=226.4
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..+++.+++++..-++. .|+.. -+|+|..++.. ++.|.|+|+.+.|+ +|||..==|-=|..++.+
T Consensus 195 ~vdeLdipe~fk~~lk~----~G~~e-LlPVQ~laVe~GLLeG~nllVVSaTa---------sGKTLIgElAGi~~~l~~ 260 (830)
T COG1202 195 PVDELDIPEKFKRMLKR----EGIEE-LLPVQVLAVEAGLLEGENLLVVSATA---------SGKTLIGELAGIPRLLSG 260 (830)
T ss_pred cccccCCcHHHHHHHHh----cCcce-ecchhhhhhhhccccCCceEEEeccC---------CCcchHHHhhCcHHHHhC
Confidence 45678888887776665 48877 48999888765 58999999999997 888877666666666543
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHh-CCcccccccccccccccccCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL-TPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L-~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.-|.|.|||.-.||-|=...+..- ++-.-+ + +. ..|.
T Consensus 261 ----------------------------------g~KmlfLvPLVALANQKy~dF~~rYs~Lglk--v----ai--rVG~ 298 (830)
T COG1202 261 ----------------------------------GKKMLFLVPLVALANQKYEDFKERYSKLGLK--V----AI--RVGM 298 (830)
T ss_pred ----------------------------------CCeEEEEehhHHhhcchHHHHHHHhhcccce--E----EE--Eech
Confidence 247899999999999999888753 322111 1 00 0111
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.-.. ....| +..-+. -.+||||+|=-|+=-++.
T Consensus 299 srIk--------------------~~~~p-------------------------v~~~t~-~dADIIVGTYEGiD~lLR- 331 (830)
T COG1202 299 SRIK--------------------TREEP-------------------------VVVDTS-PDADIIVGTYEGIDYLLR- 331 (830)
T ss_pred hhhc--------------------ccCCc-------------------------cccCCC-CCCcEEEeechhHHHHHH-
Confidence 0000 00001 000011 369999999999877775
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ + .+|..|-++||||.|.+-+.--.| +.-+ +.|+|..|=. =|-|-+|||.-
T Consensus 332 t------g-~~lgdiGtVVIDEiHtL~deERG~RLdGL---------------I~RLr~l~~~------AQ~i~LSATVg 383 (830)
T COG1202 332 T------G-KDLGDIGTVVIDEIHTLEDEERGPRLDGL---------------IGRLRYLFPG------AQFIYLSATVG 383 (830)
T ss_pred c------C-CcccccceEEeeeeeeccchhcccchhhH---------------HHHHHHhCCC------CeEEEEEeecC
Confidence 2 1 469999999999999886432222 2222 5566655432 59999999985
Q ss_pred -HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh---------hcC
Q 004428 548 -PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK---------DSI 617 (754)
Q Consensus 548 -peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~---------~~~ 617 (754)
|+ .|+..+--+ -|... .. ..+|...... |.+- ..+.+ +...|. ...
T Consensus 384 Np~--elA~~l~a~---lV~y~-~R-------PVplErHlvf--~~~e----~eK~~-----ii~~L~k~E~~~~sskg~ 439 (830)
T COG1202 384 NPE--ELAKKLGAK---LVLYD-ER-------PVPLERHLVF--ARNE----SEKWD-----IIARLVKREFSTESSKGY 439 (830)
T ss_pred ChH--HHHHHhCCe---eEeec-CC-------CCChhHeeee--ecCc----hHHHH-----HHHHHHHHHHhhhhccCc
Confidence 33 344433111 12211 10 1123222222 2111 11221 222221 124
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL 697 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l 697 (754)
.++||||..|...+.+|+.+|...|+.+..-|..++..+|.+.-..|..+++.+.|+|--.+ -|-|++ .+.|||=+|
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~--AGVDFP-ASQVIFEsL 516 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA--AGVDFP-ASQVIFESL 516 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh--cCCCCc-hHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998888 999996 577888777
Q ss_pred CC-----CCCchhhhccccCCCC---CceEEEEec
Q 004428 698 PE-----RKEFYPEIVNMLEGSH---NMTCTVLFS 724 (754)
Q Consensus 698 P~-----~pefY~erigrt~ra~---~g~~~~L~s 724 (754)
-. +|.-|..|+||.||.+ .|.+..|+-
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 65 3445788999999876 588888875
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=109.26 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 004428 600 ARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSH 679 (754)
Q Consensus 600 ~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErah 679 (754)
.|+..+.. ++..... ..+++||||++......+..+|++.++.+..+|+.++..++......|..|...||++|..+.
T Consensus 12 ~k~~~i~~-~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLE-LLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHH-HHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 56654333 3333221 467999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEE
Q 004428 680 FYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTV 721 (754)
Q Consensus 680 ffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~ 721 (754)
+|++++++++||++++|.++..|..++||++|.+ .|.|.+
T Consensus 90 --~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 90 --RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred --cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 9999999999999999999999999999999988 565543
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-12 Score=107.05 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 636 NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 636 n~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
.+|++.++.++.+|+.+++.+|..++..|.+|+.+|||+|+.+. +|++|+++++||+|++|.++.-|.+++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~--~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILG--EGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGT--TSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccc--ccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 47899999999999999999999999999999999999999988 9999999999999999999999999999999864
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-10 Score=106.01 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=124.4
Q ss_pred CCHHHHHHhhhhhCC-ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSY-RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y-~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
++|.|.++++.+.+. +.+++++.+| +|||.++++.++.++....
T Consensus 9 ~~~~Q~~~~~~~~~~~~~~~i~~~~G---------sGKT~~~~~~~~~~~~~~~-------------------------- 53 (201)
T smart00487 9 LRPYQKEAIEALLSGLRDVILAAPTG---------SGKTLAALLPALEALKRGK-------------------------- 53 (201)
T ss_pred CCHHHHHHHHHHHcCCCcEEEECCCC---------CchhHHHHHHHHHHhcccC--------------------------
Confidence 799999999999998 9999999998 8999999999999986431
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
..++||++||+.++.|+.+.+..+.+... ......+++.
T Consensus 54 -------~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------------------------- 92 (201)
T smart00487 54 -------GKRVLVLVPTRELAEQWAEELKKLGPSLG-------LKVVGLYGGD--------------------------- 92 (201)
T ss_pred -------CCcEEEEeCCHHHHHHHHHHHHHHhccCC-------eEEEEEeCCc---------------------------
Confidence 24699999999999999999998765321 0000111111
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
.. ...++-... ...+|+++||..|...+.. ....+..+.++||||||.+..
T Consensus 93 --------------------~~-~~~~~~~~~-~~~~v~~~t~~~l~~~~~~-------~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 93 --------------------SK-REQLRKLES-GKTDILVTTPGRLLDLLEN-------DLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred --------------------ch-HHHHHHHhc-CCCCEEEeChHHHHHHHHc-------CCcCHhHCCEEEEECHHHHhc
Confidence 00 111111111 2239999999999998862 113467899999999999985
Q ss_pred -cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcC
Q 004428 497 -QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCAN 560 (754)
Q Consensus 497 -QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N 560 (754)
..+..+..++..+ +. -.+-+++|||.+.........++.+
T Consensus 144 ~~~~~~~~~~~~~~---~~---------------------~~~~v~~saT~~~~~~~~~~~~~~~ 184 (201)
T smart00487 144 GGFGDQLEKLLKLL---PK---------------------NVQLLLLSATPPEEIENLLELFLND 184 (201)
T ss_pred CCcHHHHHHHHHhC---Cc---------------------cceEEEEecCCchhHHHHHHHhcCC
Confidence 3344455554433 22 2678999999999888888887764
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-08 Score=121.55 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=104.5
Q ss_pred HHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC---CccEEEEcccccccCc
Q 004428 607 KKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG---KRKMILYTERSHFYHR 683 (754)
Q Consensus 607 ~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G---~~~ILL~TErahffRr 683 (754)
..+|+.+.. ...++|||+....-..-|..+|...++.++.|+|.++..+|..++..|... ..-+||.|.... -|
T Consensus 477 dkLL~~Lk~-~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG--lG 553 (1033)
T PLN03142 477 DKLLPKLKE-RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG--LG 553 (1033)
T ss_pred HHHHHHHHh-cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc--cC
Confidence 346666543 357999999877778888899999999999999999999999999999753 346789999988 99
Q ss_pred cccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEEEechh--cHHHHHHHhCchHH
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF--DMLRLERIVGSAHA 740 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~--D~~~LErIVGt~ra 740 (754)
+.+..+++||+||+|=||.-+..+++|+-|-| ...++-|++.. |-.-+++.....+.
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776 23455567653 44444554444433
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-09 Score=122.81 Aligned_cols=314 Identities=18% Similarity=0.259 Sum_probs=191.7
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 243 KHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 243 ~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
+.+.+.++++.+.. |...|+...--+..|+-.-..|+|| .|||.-=++-+| .+..
T Consensus 69 e~~~~fF~k~~G~~-~ws~QR~WakR~~rg~SFaiiAPTG---------vGKTTfg~~~sl--~~a~------------- 123 (1187)
T COG1110 69 EEFEEFFKKATGFR-PWSAQRVWAKRLVRGKSFAIIAPTG---------VGKTTFGLLMSL--YLAK------------- 123 (1187)
T ss_pred HHHHHHHHHhhCCC-chHHHHHHHHHHHcCCceEEEcCCC---------CchhHHHHHHHH--HHHh-------------
Confidence 34444455544444 7889999999999999999999999 566533222221 1111
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
+| -|++||+||+-|+.|+++.|.+++..... -+.+.. |.+.=
T Consensus 124 -----------------kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~----~~~~~~--yh~~l------------ 165 (1187)
T COG1110 124 -----------------KG---KRVYIIVPTTTLVRQVYERLKKFAEDAGS----LDVLVV--YHSAL------------ 165 (1187)
T ss_pred -----------------cC---CeEEEEecCHHHHHHHHHHHHHHHhhcCC----cceeee--ecccc------------
Confidence 33 47999999999999999999999754321 112222 43320
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCC-
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLS- 481 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLS- 481 (754)
| -+=.+..+.-+.+ ..-||+|+|-.=|..-.+ -|+
T Consensus 166 ------~--------------------------~~ekee~le~i~~-gdfdIlitTs~FL~k~~e-----------~L~~ 201 (1187)
T COG1110 166 ------P--------------------------TKEKEEALERIES-GDFDILITTSQFLSKRFE-----------ELSK 201 (1187)
T ss_pred ------c--------------------------hHHHHHHHHHHhc-CCccEEEEeHHHHHhhHH-----------Hhcc
Confidence 0 0001222332322 357999999887765443 355
Q ss_pred -ceeEEEEecchhhh--hcCchHHHHHHHHhccCCCC---------------CCCCchhhhhhhhcc------cCCCccc
Q 004428 482 -SIEVLIIDHADIIL--MQNWSWLIEVVEQLNRIPSK---------------QHGTDVMRIRQWYLD------GYSRFYR 537 (754)
Q Consensus 482 -SIEiLVlDeAD~mL--mQNw~hv~~Il~~Ln~~Pk~---------------~h~~DfsRvR~w~L~------~~ak~~R 537 (754)
.-.++++|-+|.+| --|-+-+..++. .|.+ ...-.+.+++.-.-. -.-+..=
T Consensus 202 ~kFdfifVDDVDA~LkaskNvDriL~LlG----f~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g 277 (1187)
T COG1110 202 LKFDFIFVDDVDAILKASKNVDRLLRLLG----FSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLG 277 (1187)
T ss_pred cCCCEEEEccHHHHHhccccHHHHHHHcC----CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCc
Confidence 36789999999998 345554444332 1111 011222333221100 0011123
Q ss_pred cEEEEcCCCCHH-HH-HHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh
Q 004428 538 QTVLLSYHPNPE-IN-AFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD 615 (754)
Q Consensus 538 QTllFSAt~~pe-in-sL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~ 615 (754)
|.++-|||-.|- .+ .||+ -+.++. .|.....+.+|..+|.-- .+. + +++..++.
T Consensus 278 ~LvvsSATg~~rg~R~~LfR-eLlgFe---------vG~~~~~LRNIvD~y~~~--~~~----e--------~~~elvk~ 333 (1187)
T COG1110 278 ILVVSSATGKPRGSRLKLFR-ELLGFE---------VGSGGEGLRNIVDIYVES--ESL----E--------KVVELVKK 333 (1187)
T ss_pred eEEEeeccCCCCCchHHHHH-HHhCCc---------cCccchhhhheeeeeccC--ccH----H--------HHHHHHHH
Confidence 567778998875 23 3343 344432 122122344555555533 111 1 23332322
Q ss_pred cCCCcEEEEecc---hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEccccccc----CccccCC
Q 004428 616 SIQGGIMLFLSS---YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFY----HRYKIRG 688 (754)
Q Consensus 616 ~~~~~tLIFv~S---y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahff----Rr~dIkg 688 (754)
- ..|.|||||. ..-+..|..||+.+|+++..+|... .+.+..|..|++.+||-. |+|| ||+|++.
T Consensus 334 l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~-----~~~le~F~~GeidvLVGv--AsyYG~lVRGlDLP~ 405 (1187)
T COG1110 334 L-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK-----EEALEDFEEGEVDVLVGV--ASYYGVLVRGLDLPH 405 (1187)
T ss_pred h-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc-----hhhhhhhccCceeEEEEe--cccccceeecCCchh
Confidence 2 4699999999 7888999999999999999999833 678999999999999953 4443 8999987
Q ss_pred -CCeEEEccCCC
Q 004428 689 -IQNLIIYSLPE 699 (754)
Q Consensus 689 -V~~VIfY~lP~ 699 (754)
|+.+|||+.|.
T Consensus 406 rirYaIF~GvPk 417 (1187)
T COG1110 406 RIRYAVFYGVPK 417 (1187)
T ss_pred heeEEEEecCCc
Confidence 89999999994
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=122.67 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=67.1
Q ss_pred HHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 004428 601 RLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHF 680 (754)
Q Consensus 601 Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahf 680 (754)
..+.....|.. +. ...+++||+.+||..-..+...|....... .+.|-.. .+.+.+..|+.+...||+.|.. |
T Consensus 632 ~~~~~~~~i~~-~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~s--F 704 (820)
T PRK07246 632 YAEEIAKRLEE-LK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGS--F 704 (820)
T ss_pred HHHHHHHHHHH-HH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecch--h
Confidence 33344444433 44 456899999999999999999997654444 3333221 2456788999999999999955 7
Q ss_pred cCccccCC--CCeEEEccCC-CCC
Q 004428 681 YHRYKIRG--IQNLIIYSLP-ERK 701 (754)
Q Consensus 681 fRr~dIkg--V~~VIfY~lP-~~p 701 (754)
+-|.|++| ...||...|| ..|
T Consensus 705 wEGVD~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 705 WEGVDFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred hCCCCCCCCCeEEEEEecCCCCCC
Confidence 79999974 5667888988 445
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-09 Score=112.09 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=108.4
Q ss_pred HHHHHhHHhhhcC-CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCc
Q 004428 605 FTKKVFPKIKDSI-QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHR 683 (754)
Q Consensus 605 F~~~iLp~l~~~~-~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr 683 (754)
|+..|...|.... ...-||||=|..|+..|...|+..||.+.+.|.|+.+.+++-|-+..-.|+++|+|+|=-+. -|
T Consensus 303 ~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg--mg 380 (695)
T KOG0353|consen 303 CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG--MG 380 (695)
T ss_pred HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec--cc
Confidence 4555665565433 34568999999999999999999999999999999999999999999999999999997755 99
Q ss_pred cccCCCCeEEEccCCCCCCchhh-------------------------------------------hccccCCCC-CceE
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPE-------------------------------------------IVNMLEGSH-NMTC 719 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~e-------------------------------------------rigrt~ra~-~g~~ 719 (754)
+|=++|+.||+-+||...+-|-. -.||.||.+ ...|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999998877 235555554 5788
Q ss_pred EEEechhcHHHHHHHhCch
Q 004428 720 TVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 720 ~~L~sk~D~~~LErIVGt~ 738 (754)
+.+|---|..++...|-.+
T Consensus 461 ilyy~~~difk~ssmv~~e 479 (695)
T KOG0353|consen 461 ILYYGFADIFKISSMVQME 479 (695)
T ss_pred EEEechHHHHhHHHHHHHH
Confidence 8888777877665444333
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=121.93 Aligned_cols=364 Identities=15% Similarity=0.199 Sum_probs=234.7
Q ss_pred CCHHHHHHhhhhhCCc-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYR-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
..+||..+.+..+.+. .++.||+|| .|||-.-+|-||+.|-.....+..
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTG---------aGKTNVAvLtiLqel~~h~r~dgs--------------------- 359 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTG---------AGKTNVAVLTILQELGNHLREDGS--------------------- 359 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCC---------CCchHHHHHHHHHHHhcccccccc---------------------
Confidence 4689999999998765 799999998 889999999999998654321110
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHH-hCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCC
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIR-LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKS 415 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~-L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 415 (754)
.-+ ..-|+..++|++.||..+|..|.+ |++.. +.| .+--| +
T Consensus 360 -~nl--~~fKIVYIAPmKaLvqE~VgsfSkRla~~G--I~V------~ElTg-D-------------------------- 401 (1674)
T KOG0951|consen 360 -VNL--APFKIVYIAPMKALVQEMVGSFSKRLAPLG--ITV------LELTG-D-------------------------- 401 (1674)
T ss_pred -eec--ccceEEEEeeHHHHHHHHHHHHHhhccccC--cEE------EEecc-c--------------------------
Confidence 001 124899999999999999998865 44432 112 11111 1
Q ss_pred CCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh
Q 004428 416 KPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL 495 (754)
Q Consensus 416 KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL 495 (754)
...+++++ ....|||+||=- .|+|.+ |..+-++.+=+..|||||.|.+-
T Consensus 402 --------------------~~l~~~qi------eeTqVIV~TPEK-~DiITR----k~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 402 --------------------SQLGKEQI------EETQVIVTTPEK-WDIITR----KSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred --------------------ccchhhhh------hcceeEEeccch-hhhhhc----ccCchhHHHHHHHHhhhhhhhcc
Confidence 12233333 478999999987 456664 22355678889999999998765
Q ss_pred hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhhcCCCceEEEeecccC
Q 004428 496 MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHCANYQGKVKLACEYKG 573 (754)
Q Consensus 496 mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~~N~~G~Vkv~~~~~g 573 (754)
+-=-.-++.|...+...-+ | ....---+-+|||+| .++-++.. .++.|-....+.|.
T Consensus 451 DdRGpvLESIVaRt~r~se------------s-----~~e~~RlVGLSATLPNy~DV~~Fl~---v~~~glf~fd~syR- 509 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSE------------S-----TEEGSRLVGLSATLPNYEDVASFLR---VDPEGLFYFDSSYR- 509 (1674)
T ss_pred cccchHHHHHHHHHHHHhh------------h-----cccCceeeeecccCCchhhhHHHhc---cCcccccccCcccC-
Confidence 4333455566554432211 1 111223588999998 33433321 23344433333331
Q ss_pred cccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHH-------------
Q 004428 574 VLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLK------------- 639 (754)
Q Consensus 574 ~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk------------- 639 (754)
..++.|.|+-+... .++.||+..-.....++.. .+.+++||||.|..+.-+.++.++
T Consensus 510 -----pvPL~qq~Igi~ek----~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fm 580 (1674)
T KOG0951|consen 510 -----PVPLKQQYIGITEK----KPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFM 580 (1674)
T ss_pred -----cCCccceEeccccC----CchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHH
Confidence 24688999887654 3467777655555556554 456899999999988766655444
Q ss_pred -hC-----------------------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE-
Q 004428 640 -SQ-----------------------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII- 694 (754)
Q Consensus 640 -~~-----------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf- 694 (754)
+. -.-|+-=|..++..+|.-.-..|..|.++|||.|--.+ +|..+++ ++||.
T Consensus 581 re~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatla--wgvnlpa-htViik 657 (1674)
T KOG0951|consen 581 REDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLA--WGVNLPA-HTVIIK 657 (1674)
T ss_pred hcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhh--hhcCCCc-ceEEec
Confidence 21 13466778999999999999999999999999999999 9999876 44543
Q ss_pred ----ccC------CCCCCchhhhccccCCCC-----CceEEEEechh----------------------cHHHHHHHhCc
Q 004428 695 ----YSL------PERKEFYPEIVNMLEGSH-----NMTCTVLFSRF----------------------DMLRLERIVGS 737 (754)
Q Consensus 695 ----Y~l------P~~pefY~erigrt~ra~-----~g~~~~L~sk~----------------------D~~~LErIVGt 737 (754)
|++ |-.|..-..|+||.||.. .|..++=++.. |.+.-|-+.|.
T Consensus 658 gtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv 737 (1674)
T KOG0951|consen 658 GTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGV 737 (1674)
T ss_pred CccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcch
Confidence 444 345556667778877764 34444322211 11111556677
Q ss_pred hHHHHhhhcCCCcccc
Q 004428 738 AHAKKMVKSEKGVFVF 753 (754)
Q Consensus 738 ~ra~~m~~s~~~~~~F 753 (754)
+++..++.=-+-+|.|
T Consensus 738 ~~~~d~~~wl~yTyly 753 (1674)
T KOG0951|consen 738 RSARDAVDWLGYTYLY 753 (1674)
T ss_pred hhHHHHHhhhcceeeE
Confidence 7777777665555554
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-10 Score=92.58 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=77.0
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccC
Q 004428 633 RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLE 712 (754)
Q Consensus 633 rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ 712 (754)
.|..+|++.++.+..+|+.+++.++..+...|..|...||++|..+. .|++++.+++||++++|.++..|.+++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~--~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAE--RGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhh--CCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46788888899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCC
Q 004428 713 GSH 715 (754)
Q Consensus 713 ra~ 715 (754)
|.+
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 864
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-07 Score=113.84 Aligned_cols=229 Identities=22% Similarity=0.219 Sum_probs=155.0
Q ss_pred CCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhhcc
Q 004428 452 SDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWYLD 530 (754)
Q Consensus 452 sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~L~ 530 (754)
.-|-+-|.|=|..-|.+ |. +||.+.++||||||.=.- |-|.+.-+++. +...|.+
T Consensus 140 Trik~mTdGiLlrei~~-------D~-~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~D--------------- 195 (845)
T COG1643 140 TRIKVMTDGILLREIQN-------DP-LLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDD--------------- 195 (845)
T ss_pred ceeEEeccHHHHHHHhh-------Cc-ccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCC---------------
Confidence 45777788888877752 33 699999999999985432 34555555554 3333321
Q ss_pred cCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHh
Q 004428 531 GYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVF 610 (754)
Q Consensus 531 ~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iL 610 (754)
.| .|+.|||+..+- |..|+.|.+ .+.+. |. .-.|.-.|..-... |.++.-=+..++
T Consensus 196 -----LK-iIimSATld~~r---fs~~f~~ap-vi~i~----GR----~fPVei~Y~~~~~~------d~~l~~ai~~~v 251 (845)
T COG1643 196 -----LK-LIIMSATLDAER---FSAYFGNAP-VIEIE----GR----TYPVEIRYLPEAEA------DYILLDAIVAAV 251 (845)
T ss_pred -----ce-EEEEecccCHHH---HHHHcCCCC-EEEec----CC----ccceEEEecCCCCc------chhHHHHHHHHH
Confidence 23 588899999873 345555533 34432 21 22344444332211 211111111233
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKS----QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI 686 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~----~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI 686 (754)
-.......+.+|||.|--.+..++...|.+ ..+..+.+|+-++..+-.|+..---.|+.+|.|+|-+|- =.+.|
T Consensus 252 ~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAE--TSLTI 329 (845)
T COG1643 252 DIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAE--TSLTI 329 (845)
T ss_pred HHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccc--cceee
Confidence 333445688999999999999999999998 457889999999999999977666777778999999999 99999
Q ss_pred CCCCeEEEccCCCCCCchhhhcc-------------------ccCCCCCceEEEEechhcHHHH
Q 004428 687 RGIQNLIIYSLPERKEFYPEIVN-------------------MLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 687 kgV~~VIfY~lP~~pefY~erig-------------------rt~ra~~g~~~~L~sk~D~~~L 731 (754)
+||+.||.=++=.-+- |..+.| |.||-+.|.|+=|||+.+...+
T Consensus 330 ~gIr~VIDsG~ak~~~-y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~ 392 (845)
T COG1643 330 PGIRYVIDSGLAKEKR-YDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAF 392 (845)
T ss_pred CCeEEEecCCcccccc-cccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhc
Confidence 9999999887765443 444433 3344447999999999887655
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-07 Score=106.81 Aligned_cols=86 Identities=13% Similarity=0.267 Sum_probs=63.6
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceE-eecCCCCHHHHHHHHHHHhc----CCccEEEEcccccccCccc
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFC-LLGDYTEPSDISRARVWFFE----GKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~-~Ihey~sq~~r~rar~~F~~----G~~~ILL~TErahffRr~d 685 (754)
..+.....+++||-+.||..-..+...|.. .+.+. .+.|. ...+...+..|+. |...||+.|+- |+-|+|
T Consensus 463 ~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~-~l~~~~l~qg~--~~~~~~l~~~f~~~~~~~~~~vL~gt~s--fweGvD 537 (636)
T TIGR03117 463 AAILRKAQGGTLVLTTAFSHISAIGQLVEL-GIPAEIVIQSE--KNRLASAEQQFLALYANGIQPVLIAAGG--AWTGID 537 (636)
T ss_pred HHHHHHcCCCEEEEechHHHHHHHHHHHHh-hcCCCEEEeCC--CccHHHHHHHHHHhhcCCCCcEEEeCCc--cccccc
Confidence 334455678999999999999999999975 33333 33442 2234556777776 58999999988 559999
Q ss_pred c--------CC--CCeEEEccCCCCC
Q 004428 686 I--------RG--IQNLIIYSLPERK 701 (754)
Q Consensus 686 I--------kg--V~~VIfY~lP~~p 701 (754)
| +| +++||..-||--|
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCc
Confidence 9 45 9999999999333
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-07 Score=108.23 Aligned_cols=275 Identities=16% Similarity=0.211 Sum_probs=178.2
Q ss_pred ceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeec
Q 004428 345 PKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILF 424 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF 424 (754)
.+|-|||||==||.|=.++|.+=...- .++|.-..||.. .
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s----~----------------------------------- 683 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRS----A----------------------------------- 683 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCC----H-----------------------------------
Confidence 689999999999999999998643222 255666677753 1
Q ss_pred cCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHH
Q 004428 425 GGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIE 504 (754)
Q Consensus 425 ~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~ 504 (754)
+=++..++-.+. ...||||+| ..++.. +. -+..+-+|||||=.++=-.--+++..
T Consensus 684 ------------kE~~~il~~la~-G~vDIvIGT----HrLL~k-------dv-~FkdLGLlIIDEEqRFGVk~KEkLK~ 738 (1139)
T COG1197 684 ------------KEQKEILKGLAE-GKVDIVIGT----HRLLSK-------DV-KFKDLGLLIIDEEQRFGVKHKEKLKE 738 (1139)
T ss_pred ------------HHHHHHHHHHhc-CCccEEEec----hHhhCC-------Cc-EEecCCeEEEechhhcCccHHHHHHH
Confidence 001222332332 679999999 556651 23 36788999999999986433455544
Q ss_pred HHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeE
Q 004428 505 VVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQ 584 (754)
Q Consensus 505 Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q 584 (754)
+-..+ =.|-+|||.=|---.+.-.-.+... |--+|+ .+. ..| |
T Consensus 739 Lr~~V----------------------------DvLTLSATPIPRTL~Msm~GiRdlS--vI~TPP-~~R-----~pV-~ 781 (1139)
T COG1197 739 LRANV----------------------------DVLTLSATPIPRTLNMSLSGIRDLS--VIATPP-EDR-----LPV-K 781 (1139)
T ss_pred HhccC----------------------------cEEEeeCCCCcchHHHHHhcchhhh--hccCCC-CCC-----cce-E
Confidence 43221 2678899988875444433333322 111122 111 122 4
Q ss_pred EEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHH
Q 004428 585 IYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARV 662 (754)
Q Consensus 585 ~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~ 662 (754)
+|..=. +.. .....|+..|. ..+++--..|.-.+-.+++..|+.. .++++..||-|+.++..+.+.
T Consensus 782 T~V~~~--d~~--------~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 782 TFVSEY--DDL--------LIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred EEEecC--ChH--------HHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 454311 110 01123444443 3566777777788899999999986 889999999999999999999
Q ss_pred HHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC--CCchhhhccccCCCC-CceEEEEechhc------HHHHHH
Q 004428 663 WFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER--KEFYPEIVNMLEGSH-NMTCTVLFSRFD------MLRLER 733 (754)
Q Consensus 663 ~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~--pefY~erigrt~ra~-~g~~~~L~sk~D------~~~LEr 733 (754)
.|.+|+..|||||=..- -|+||++++++|-.+-=.. ++-| .+=||.||+. .+.|.-||-+.. ..+|+.
T Consensus 850 ~F~~g~~dVLv~TTIIE--tGIDIPnANTiIIe~AD~fGLsQLy-QLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~a 926 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIE--TGIDIPNANTIIIERADKFGLAQLY-QLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEA 926 (1139)
T ss_pred HHHcCCCCEEEEeeeee--cCcCCCCCceEEEeccccccHHHHH-HhccccCCccceEEEEEeecCccccCHHHHHHHHH
Confidence 99999999999999999 9999999999996443221 1223 3347888876 466666664322 356766
Q ss_pred HhC
Q 004428 734 IVG 736 (754)
Q Consensus 734 IVG 736 (754)
|-.
T Consensus 927 I~~ 929 (1139)
T COG1197 927 IAS 929 (1139)
T ss_pred HHh
Confidence 644
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.3e-07 Score=96.65 Aligned_cols=292 Identities=16% Similarity=0.217 Sum_probs=177.5
Q ss_pred CCHHHHH----HhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRS----FFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~----~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
-||-|+. ++..+.+-.|.|.-|-|| .|||.. +-.++..+++
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~G---------aGKTEM-if~~i~~al~------------------------- 142 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTG---------AGKTEM-IFQGIEQALN------------------------- 142 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecC---------CCchhh-hHHHHHHHHh-------------------------
Confidence 3777754 456667888999999998 666653 2344555543
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCC
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQ 413 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~ 413 (754)
||+ +|.|-.|--..|+.+...|.+-...-
T Consensus 143 ------~G~---~vciASPRvDVclEl~~Rlk~aF~~~------------------------------------------ 171 (441)
T COG4098 143 ------QGG---RVCIASPRVDVCLELYPRLKQAFSNC------------------------------------------ 171 (441)
T ss_pred ------cCC---eEEEecCcccchHHHHHHHHHhhccC------------------------------------------
Confidence 443 68899998888888887777543211
Q ss_pred CCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchh
Q 004428 414 KSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADI 493 (754)
Q Consensus 414 ~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~ 493 (754)
|.-.++++ .+|. +.+.+||||-=-|... =...+++||||.|.
T Consensus 172 -----~I~~Lyg~-S~~~------------------fr~plvVaTtHQLlrF--------------k~aFD~liIDEVDA 213 (441)
T COG4098 172 -----DIDLLYGD-SDSY------------------FRAPLVVATTHQLLRF--------------KQAFDLLIIDEVDA 213 (441)
T ss_pred -----CeeeEecC-Cchh------------------ccccEEEEehHHHHHH--------------HhhccEEEEecccc
Confidence 11223332 2222 2389999998777654 22467899999999
Q ss_pred hhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceE---EEeec
Q 004428 494 ILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKV---KLACE 570 (754)
Q Consensus 494 mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~V---kv~~~ 570 (754)
+=.-+=..+..-.+.- - |..--||.+|||.+.++..-... |++ ++-..
T Consensus 214 FP~~~d~~L~~Av~~a---r--------------------k~~g~~IylTATp~k~l~r~~~~------g~~~~~klp~R 264 (441)
T COG4098 214 FPFSDDQSLQYAVKKA---R--------------------KKEGATIYLTATPTKKLERKILK------GNLRILKLPAR 264 (441)
T ss_pred ccccCCHHHHHHHHHh---h--------------------cccCceEEEecCChHHHHHHhhh------CCeeEeecchh
Confidence 8422212333333221 1 12245899999999887543322 333 33222
Q ss_pred ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhC--CCceE
Q 004428 571 YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFC 646 (754)
Q Consensus 571 ~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~ 646 (754)
+.| -...|+..+...+..... ...|+. .+++..|.+ ....++|||+|+-.--..+...|++. ....+
T Consensus 265 fH~----~pLpvPkf~w~~~~~k~l--~r~kl~---~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~ 335 (441)
T COG4098 265 FHG----KPLPVPKFVWIGNWNKKL--QRNKLP---LKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIA 335 (441)
T ss_pred hcC----CCCCCCceEEeccHHHHh--hhccCC---HHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcccee
Confidence 222 122344433322211100 000111 122223333 24578999999999999999999653 33445
Q ss_pred eecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc-CCCC-CCchhhhccccCCCC
Q 004428 647 LLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS-LPER-KEFYPEIVNMLEGSH 715 (754)
Q Consensus 647 ~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~-lP~~-pefY~erigrt~ra~ 715 (754)
+.|. ....|..-..+|++|++.|||+|-..- ||..++.|+.+|.=. -+.+ -.--+.+.||+||+-
T Consensus 336 ~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILE--RGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 336 SVHS--EDQHRKEKVEAFRDGKITLLITTTILE--RGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred eeec--cCccHHHHHHHHHcCceEEEEEeehhh--cccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 6665 455677778999999999999999999 999999999887532 1111 122456779999875
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.8e-06 Score=95.96 Aligned_cols=328 Identities=15% Similarity=0.144 Sum_probs=202.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCcccc
Q 004428 236 GLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTK 315 (754)
Q Consensus 236 ~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~k 315 (754)
.....+.+.|.+. ..|. +|.-|+.++.-|.. |+--..+----+.| +-++|||.+-+|-+|+-+-
T Consensus 246 ~~~~~l~~~~~~~---LPF~--LT~aQ~~vi~EI~~--Dl~~~~~M~RLlQG-DVGSGKTvVA~laml~ai~-------- 309 (677)
T COG1200 246 PANGELLAKFLAA---LPFK--LTNAQKRVIKEILA--DLASPVPMNRLLQG-DVGSGKTVVALLAMLAAIE-------- 309 (677)
T ss_pred CccHHHHHHHHHh---CCCC--ccHHHHHHHHHHHh--hhcCchhhHHHhcc-CcCCCHHHHHHHHHHHHHH--------
Confidence 3344455555443 2553 59999999887753 22111000000112 4569999999999888663
Q ss_pred chhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCc
Q 004428 316 NDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDK 395 (754)
Q Consensus 316 nn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~ 395 (754)
.|| +|..++||==||.|=...+.++.+... +.| .-..|..
T Consensus 310 ------------------------~G~---Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V------~lLtG~~------ 349 (677)
T COG1200 310 ------------------------AGY---QAALMAPTEILAEQHYESLRKWLEPLG-IRV------ALLTGSL------ 349 (677)
T ss_pred ------------------------cCC---eeEEeccHHHHHHHHHHHHHHHhhhcC-CeE------EEeeccc------
Confidence 354 689999999999999999999876532 111 1111211
Q ss_pred ccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccccc
Q 004428 396 DDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQ 475 (754)
Q Consensus 396 ~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~r 475 (754)
| |-+-..-..+|.+ ...||||+| .-+|.
T Consensus 350 --------------------k------------------gk~r~~~l~~l~~--G~~~ivVGT----HALiQ-------- 377 (677)
T COG1200 350 --------------------K------------------GKARKEILEQLAS--GEIDIVVGT----HALIQ-------- 377 (677)
T ss_pred --------------------c------------------hhHHHHHHHHHhC--CCCCEEEEc----chhhh--------
Confidence 0 0000111223333 459999999 44554
Q ss_pred CcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHH
Q 004428 476 DVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFF 554 (754)
Q Consensus 476 d~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~ 554 (754)
+.--+..+-++|+||=||+= +| ...+..-.. + +=-.|++|||.=|---+|.
T Consensus 378 d~V~F~~LgLVIiDEQHRFGV~Q-----R~~L~~KG~---------------------~--~Ph~LvMTATPIPRTLAlt 429 (677)
T COG1200 378 DKVEFHNLGLVIIDEQHRFGVHQ-----RLALREKGE---------------------Q--NPHVLVMTATPIPRTLALT 429 (677)
T ss_pred cceeecceeEEEEeccccccHHH-----HHHHHHhCC---------------------C--CCcEEEEeCCCchHHHHHH
Confidence 12236788999999999985 54 222222121 0 1236999999998766554
Q ss_pred HHhhcCCCceEEEe--ecc-cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch-
Q 004428 555 NHHCANYQGKVKLA--CEY-KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY- 628 (754)
Q Consensus 555 ~~~~~N~~G~Vkv~--~~~-~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy- 628 (754)
- -|-+.+. .+. .|. ..|.=.... +.|+. .++..+.. ....++.+.||=-
T Consensus 430 ~------fgDldvS~IdElP~GR-----kpI~T~~i~----------~~~~~----~v~e~i~~ei~~GrQaY~VcPLIe 484 (677)
T COG1200 430 A------FGDLDVSIIDELPPGR-----KPITTVVIP----------HERRP----EVYERIREEIAKGRQAYVVCPLIE 484 (677)
T ss_pred H------hccccchhhccCCCCC-----CceEEEEec----------cccHH----HHHHHHHHHHHcCCEEEEEecccc
Confidence 2 1333322 110 120 123222222 12232 23333332 2456788888833
Q ss_pred -------hcHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 629 -------FEFVRLRNFLKSQ--NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 629 -------~d~vrlrn~Lk~~--~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
..++.+.+.|+.. ++..+.+||-|+..+..+++..|++|+++|||+|=|.- =|.|+++.+-.|.++.=.
T Consensus 485 ESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE--VGVdVPnATvMVIe~AER 562 (677)
T COG1200 485 ESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE--VGVDVPNATVMVIENAER 562 (677)
T ss_pred ccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE--ecccCCCCeEEEEechhh
Confidence 3566677777743 67799999999999999999999999999999999999 999999999999998655
Q ss_pred CCCchhhhc-cccCCCC-CceEEEEechh
Q 004428 700 RKEFYPEIV-NMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 700 ~pefY~eri-grt~ra~-~g~~~~L~sk~ 726 (754)
.---=.|-. ||.||.+ .+.|+-+|...
T Consensus 563 FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 563 FGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred hhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 444444444 6788776 57787777543
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-06 Score=102.39 Aligned_cols=89 Identities=22% Similarity=0.372 Sum_probs=68.4
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC-
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA--SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG- 688 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~--~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg- 688 (754)
.+.....+++|||.+||..-..+..+|+.... .+..+.-..+...|.+.+..|+.++..||+.|.- |+-|+|++|
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~s--FwEGVD~pg~ 823 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSS--FWEGIDIPGD 823 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCc--ccCccccCCC
Confidence 34444568999999999999999999986432 1333333344456788899999999999999955 779999999
Q ss_pred -CCeEEEccCCC-CCC
Q 004428 689 -IQNLIIYSLPE-RKE 702 (754)
Q Consensus 689 -V~~VIfY~lP~-~pe 702 (754)
.+.||.-.||- .|.
T Consensus 824 ~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 824 ELSCLVIVRLPFAPPD 839 (928)
T ss_pred ceEEEEEecCCCCCCC
Confidence 59999999995 565
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=103.39 Aligned_cols=335 Identities=14% Similarity=0.118 Sum_probs=203.0
Q ss_pred CHHHHHHhhhhhC---Cc-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccc
Q 004428 259 SSKQRSFFSLCNS---YR-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIG 334 (754)
Q Consensus 259 TpiQ~~~ip~i~~---y~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~ 334 (754)
.+.|..++-.+.. .. .++..|+|| .|||.|.+..++.++...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG---------~GKT~asl~~a~~~~~~~------------------------- 242 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTG---------YGKTEASLILALALLDEK------------------------- 242 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCC---------CChHHHHHHHHHHHhhcc-------------------------
Confidence 5667666666543 33 778899998 789999999988777431
Q ss_pred cccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCC
Q 004428 335 DAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQK 414 (754)
Q Consensus 335 ~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~ 414 (754)
+ ...+|++.++|||-+..++.+.+....+.... . ... +.+..... ..
T Consensus 243 -----~-~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~---~--~~~---~h~~~~~~-------------------~~ 289 (733)
T COG1203 243 -----I-KLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV---I--GKS---LHSSSKEP-------------------LL 289 (733)
T ss_pred -----c-cccceEEEEccHHHHHHHHHHHHHhhhccccc---c--ccc---ccccccch-------------------hh
Confidence 0 13578999999999999999999987543321 0 000 11110000 00
Q ss_pred CCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCC--ceeEEEEecch
Q 004428 415 SKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLS--SIEVLIIDHAD 492 (754)
Q Consensus 415 ~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLS--SIEiLVlDeAD 492 (754)
..|.+ ++++..+ ...-|.. -...+++.+|..+..... +-..+.+++ ..-++|+||++
T Consensus 290 ~~~~~-------------~~~~~~~--~~ds~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 290 LEPDQ-------------DILLTLT--TNDSYKK-LLLALIVVTPIQILIFSV-----KGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hcccc-------------ccceeEE--ecccccc-eeccccccCHhHhhhhhc-----cccchHHHHHHHhhchhhccHH
Confidence 11111 1111111 0001111 124567777777665322 112233232 34689999999
Q ss_pred hhhhc-CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 493 IILMQ-NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 493 ~mLmQ-Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
.+..- -|..+..++..++..-. -.|+.|||+|+.+...+...+.+. +.+......
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~-----------------------~ill~SATlP~~~~~~l~~~~~~~-~~~~~~~~~ 404 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGV-----------------------PVLLMSATLPPFLKEKLKKALGKG-REVVENAKF 404 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCC-----------------------CEEEEecCCCHHHHHHHHHHHhcc-cceeccccc
Confidence 99855 57888888888764322 268889999999999888877663 222221110
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY 651 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey 651 (754)
.+...... +.+. .+++ ..+.+... ...++...-....++||-|+|-..+.++...|+..+.+.+.+|+-
T Consensus 405 ~~~~~e~~--~~~~-~~~~------~~~~~~~~--~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSR 473 (733)
T COG1203 405 CPKEDEPG--LKRK-ERVD------VEDGPQEE--LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSR 473 (733)
T ss_pred cccccccc--cccc-cchh------hhhhhhHh--hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecc
Confidence 00000110 1110 0011 01111100 011111111346899999999999999999999988899999999
Q ss_pred CCHHHHHHHHHH----HhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEE
Q 004428 652 TEPSDISRARVW----FFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTV 721 (754)
Q Consensus 652 ~sq~~r~rar~~----F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~ 721 (754)
.+.++|.+-... |+.+...|+|+|=+.- =|.||. .+.+| .=|.-.+--+.|.||..|-+ +|.+++
T Consensus 474 f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIE--agvDid-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 474 FTLKDREEKERELKKLFKQNEGFIVVATQVIE--AGVDID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEeeEEE--EEeccc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeE
Confidence 999999987764 3567899999999999 999995 66554 33444556688999998766 344444
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-06 Score=101.04 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=73.4
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC-----CCceEeecCCCCHH---------------------HHHHHHHHHhc-CCcc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ-----NASFCLLGDYTEPS---------------------DISRARVWFFE-GKRK 670 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~-----~~~f~~Ihey~sq~---------------------~r~rar~~F~~-G~~~ 670 (754)
..++||||.|...++++.+.|.+. +...+.+++..... ...+.+..|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 489999999999999999998764 24556666544332 12367888977 6889
Q ss_pred EEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCC
Q 004428 671 MILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEG 713 (754)
Q Consensus 671 ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~r 713 (754)
|||.+|.+- -|||.+.+.+++..-+-.. +-+...|||+-|
T Consensus 594 ilIVvdmll--TGFDaP~l~tLyldKplk~-h~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVDMLL--TGFDAPILNTLYLDKPLKY-HGLLQAIARTNR 633 (667)
T ss_pred EEEEEcccc--cccCCCccceEEEeccccc-cHHHHHHHHhcc
Confidence 999999988 9999999999998776554 456788888887
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-06 Score=74.62 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=79.4
Q ss_pred cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccc
Q 004428 274 DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPL 353 (754)
Q Consensus 274 Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PT 353 (754)
-++....|| +|||..++.-+....... ..+++||++|+
T Consensus 2 ~~~i~~~~G---------~GKT~~~~~~~~~~~~~~---------------------------------~~~~~lv~~p~ 39 (144)
T cd00046 2 DVLLAAPTG---------SGKTLAALLPILELLDSL---------------------------------KGGQVLVLAPT 39 (144)
T ss_pred CEEEECCCC---------CchhHHHHHHHHHHHhcc---------------------------------cCCCEEEEcCc
Confidence 356777777 899999888887766431 24689999999
Q ss_pred hhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCccc
Q 004428 354 KSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFS 433 (754)
Q Consensus 354 RelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~Fr 433 (754)
+.++.|+.+.+...... . ..+ . .+.+..
T Consensus 40 ~~l~~~~~~~~~~~~~~-~-~~~----~---~~~~~~------------------------------------------- 67 (144)
T cd00046 40 RELANQVAERLKELFGE-G-IKV----G---YLIGGT------------------------------------------- 67 (144)
T ss_pred HHHHHHHHHHHHHHhhC-C-cEE----E---EEecCc-------------------------------------------
Confidence 99999999988876542 1 101 0 111000
Q ss_pred ccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchH
Q 004428 434 IGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSW 501 (754)
Q Consensus 434 iGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h 501 (754)
...... .....+++|+|+|+..+...+.. .........++||||||.+....|..
T Consensus 68 ----~~~~~~--~~~~~~~~i~i~t~~~~~~~~~~-------~~~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 68 ----SIKQQE--KLLSGKTDIVVGTPGRLLDELER-------LKLSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred ----chhHHH--HHhcCCCCEEEECcHHHHHHHHc-------CCcchhcCCEEEEeCHHHHhhcchHH
Confidence 000000 11135799999999999887652 11345678899999999998554544
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=95.10 Aligned_cols=333 Identities=12% Similarity=0.126 Sum_probs=198.3
Q ss_pred HHHHHHh--hhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 260 SKQRSFF--SLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 260 piQ~~~i--p~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
..|.+++ |-++.+..++|.++|+ .|||.+--|=+|..++--
T Consensus 226 ewq~ecls~~~~~e~~nliys~Pts---------~gktlvaeilml~~~l~~---------------------------- 268 (1008)
T KOG0950|consen 226 EWQAECLSLPRLLERKNLIYSLPTS---------AGKTLVAEILMLREVLCR---------------------------- 268 (1008)
T ss_pred HHHHHHhcchhhhcccceEEeCCCc---------cchHHHHHHHHHHHHHHH----------------------------
Confidence 5676665 5678999999999997 789999888888887743
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
|-+||.++|+-..+..=+..+..++-..+ -+.++|+|... +...
T Consensus 269 ------rr~~llilp~vsiv~Ek~~~l~~~~~~~G--------~~ve~y~g~~~---------------------p~~~- 312 (1008)
T KOG0950|consen 269 ------RRNVLLILPYVSIVQEKISALSPFSIDLG--------FPVEEYAGRFP---------------------PEKR- 312 (1008)
T ss_pred ------hhceeEecceeehhHHHHhhhhhhccccC--------CcchhhcccCC---------------------CCCc-
Confidence 23578889988877777777777654432 23456664311 0000
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
+..-++-|||-=.=..+|..-- ..-.+..+-++|+||.+.+-.+
T Consensus 313 -------------------------------~k~~sv~i~tiEkanslin~li-----e~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 313 -------------------------------RKRESVAIATIEKANSLINSLI-----EQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred -------------------------------ccceeeeeeehHhhHhHHHHHH-----hcCCccccCcEEEeeeeeeecc
Confidence 0123555666433333332100 1123778999999999999877
Q ss_pred Cch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhh--cCCCceEEEee-cc
Q 004428 498 NWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHC--ANYQGKVKLAC-EY 571 (754)
Q Consensus 498 Nw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~--~N~~G~Vkv~~-~~ 571 (754)
.-+ +++.++.. +..|++... =|.|-.|||++ +.+...++.+. .+++ -|.+.- ..
T Consensus 357 ~rg~~lE~~l~k---------------~~y~~~~~~----~~iIGMSATi~N~~lL~~~L~A~~y~t~fR-Pv~L~E~ik 416 (1008)
T KOG0950|consen 357 GRGAILELLLAK---------------ILYENLETS----VQIIGMSATIPNNSLLQDWLDAFVYTTRFR-PVPLKEYIK 416 (1008)
T ss_pred ccchHHHHHHHH---------------HHHhccccc----eeEeeeecccCChHHHHHHhhhhheecccC-cccchhccC
Confidence 654 45555543 455655544 57899999998 44554444321 1111 111110 00
Q ss_pred cCc-cccc-c-cceeEEEEEeccCcc-cchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC------
Q 004428 572 KGV-LPKV-L-LNVRQIYERFNADSI-AKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ------ 641 (754)
Q Consensus 572 ~g~-i~~v-~-~~I~Q~f~r~~~~s~-~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~------ 641 (754)
.|. +-.. . .-++-++ ....... .+.+|--.. ...+.+ ....++||||||+..+..++-.+.+.
T Consensus 417 ~G~~i~~~~r~~~lr~ia-~l~~~~~g~~dpD~~v~-L~tet~-----~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~ 489 (1008)
T KOG0950|consen 417 PGSLIYESSRNKVLREIA-NLYSSNLGDEDPDHLVG-LCTETA-----PEGSSVLVFCPSKKNCENVASLIAKKVPKHIK 489 (1008)
T ss_pred CCcccccchhhHHHHHhh-hhhhhhcccCCCcceee-ehhhhh-----hcCCeEEEEcCcccchHHHHHHHHHHhhHhhh
Confidence 110 0000 0 0000000 0000000 011121000 000111 12356999999999988776443210
Q ss_pred ------------------------------CC--ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 642 ------------------------------NA--SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 642 ------------------------------~~--~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
.+ -++..|..++..+|.-+=..|++|-+.|+++|.-.+ -|+..+ +
T Consensus 490 ~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTla--aGVNLP-A 566 (1008)
T KOG0950|consen 490 SEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLA--AGVNLP-A 566 (1008)
T ss_pred hhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhh--ccCcCC-c
Confidence 12 234578899999999999999999999999999977 898884 5
Q ss_pred CeEEEccCCCCCCc-----hhhhccccCCCC---CceEEEEechhcHHHH
Q 004428 690 QNLIIYSLPERKEF-----YPEIVNMLEGSH---NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 690 ~~VIfY~lP~~pef-----Y~erigrt~ra~---~g~~~~L~sk~D~~~L 731 (754)
+.||.=.+.--.+| |..|+||+||+| -|.++.++.+.|..+.
T Consensus 567 rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~ 616 (1008)
T KOG0950|consen 567 RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRV 616 (1008)
T ss_pred ceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHH
Confidence 66665555444444 999999999987 5889999988886544
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00018 Score=83.88 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=151.8
Q ss_pred CCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhccc
Q 004428 452 SDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531 (754)
Q Consensus 452 sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~ 531 (754)
.-|..-|-|=|..-+- .|. .|+...++||||||-=-. +=|-+.-+++.+-+...+
T Consensus 141 TrikymTDG~LLRE~l-------~Dp-~LskYsvIIlDEAHERsl-~TDiLlGlLKki~~~R~~---------------- 195 (674)
T KOG0922|consen 141 TRIKYMTDGMLLREIL-------KDP-LLSKYSVIILDEAHERSL-HTDILLGLLKKILKKRPD---------------- 195 (674)
T ss_pred eeEEEecchHHHHHHh-------cCC-ccccccEEEEechhhhhh-HHHHHHHHHHHHHhcCCC----------------
Confidence 3455666777766554 133 499999999999985321 224445555544222211
Q ss_pred CCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhH
Q 004428 532 YSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFP 611 (754)
Q Consensus 532 ~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp 611 (754)
=-.|+.|||+..+ .|+.|+.|. ..+.| .|. .-+|+..|..-+..+.. .--+..++.
T Consensus 196 -----LklIimSATlda~---kfS~yF~~a-~i~~i----~GR----~fPVei~y~~~p~~dYv-------~a~~~tv~~ 251 (674)
T KOG0922|consen 196 -----LKLIIMSATLDAE---KFSEYFNNA-PILTI----PGR----TFPVEILYLKEPTADYV-------DAALITVIQ 251 (674)
T ss_pred -----ceEEEEeeeecHH---HHHHHhcCC-ceEee----cCC----CCceeEEeccCCchhhH-------HHHHHHHHH
Confidence 1378999999965 466777763 33333 231 23577767664433221 111112222
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHhC--CC------ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCc
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NA------SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHR 683 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~------~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr 683 (754)
.-.....+-+|||.+...+...+...|.+. .. -...||+-++..+-.|+-.---.|..+|.|+|-.|. =-
T Consensus 252 Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAE--TS 329 (674)
T KOG0922|consen 252 IHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAE--TS 329 (674)
T ss_pred HHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceee--ee
Confidence 223356789999999999998888888764 11 146799999999999987777789999999999999 99
Q ss_pred cccCCCCeEEEccCCC------------------CCCchhhhccccCCCCCceEEEEechhcHHHH
Q 004428 684 YKIRGIQNLIIYSLPE------------------RKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~------------------~pefY~erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
+.|+||..||.=++=. +-.-=..|.||.||.+.|.|.=|||+.+..+|
T Consensus 330 lTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 330 LTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKM 395 (674)
T ss_pred EEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhc
Confidence 9999999999655422 11122345667777778999999998877655
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-05 Score=75.92 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=90.1
Q ss_pred CCHHHHHHhhhhhC-------CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccc
Q 004428 258 HSSKQRSFFSLCNS-------YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEG 330 (754)
Q Consensus 258 pTpiQ~~~ip~i~~-------y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~ 330 (754)
+.|-|.+++--+.. ++.+++.+.|| +|||.+.+.-++...
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tG---------sGKT~~~~~~~~~l~------------------------ 50 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTG---------SGKTIIALALILELA------------------------ 50 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTT---------SSHHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC---------CCcChhhhhhhhccc------------------------
Confidence 35788888877763 68999999998 899988885332222
Q ss_pred cccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccC
Q 004428 331 ILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKS 410 (754)
Q Consensus 331 ~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~ 410 (754)
+ ++||++|++.|+.|..+.+..+...... -+........
T Consensus 51 -------------~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~-------~~~~~~~~~~-------------------- 89 (184)
T PF04851_consen 51 -------------R-KVLIVAPNISLLEQWYDEFDDFGSEKYN-------FFEKSIKPAY-------------------- 89 (184)
T ss_dssp -------------C-EEEEEESSHHHHHHHHHHHHHHSTTSEE-------EEE--GGGCC--------------------
T ss_pred -------------c-ceeEecCHHHHHHHHHHHHHHhhhhhhh-------hccccccccc--------------------
Confidence 1 7899999999999999999777543211 0100000000
Q ss_pred CCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccc----ccCcccCCceeEE
Q 004428 411 NSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENK----EQDVDYLSSIEVL 486 (754)
Q Consensus 411 ~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k----~rd~dfLSSIEiL 486 (754)
+.. .+.- .. -....... ......+|++.|.-.|...+....... ......+....++
T Consensus 90 --------~~~-~~~~-~~------~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 90 --------DSK-EFIS-IQ------DDISDKSE---SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp --------E-S-EEET-TT------TEEEHHHH---HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred --------ccc-cccc-cc------cccccccc---cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 000 0000 00 01111111 123578999999999988765211000 0111234567799
Q ss_pred EEecchhhhhcC-chHHHH
Q 004428 487 IIDHADIILMQN-WSWLIE 504 (754)
Q Consensus 487 VlDeAD~mLmQN-w~hv~~ 504 (754)
|+||||.+--.. |..+..
T Consensus 151 I~DEaH~~~~~~~~~~i~~ 169 (184)
T PF04851_consen 151 IIDEAHHYPSDSSYREIIE 169 (184)
T ss_dssp EEETGGCTHHHHHHHHHHH
T ss_pred EEehhhhcCCHHHHHHHHc
Confidence 999999998444 777665
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00052 Score=82.53 Aligned_cols=230 Identities=14% Similarity=0.205 Sum_probs=142.3
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcC----chHHHHHHHHhccCCCCCCCCchhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQN----WSWLIEVVEQLNRIPSKQHGTDVMRIRQ 526 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN----w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~ 526 (754)
.+.++|-|-==||-.+- |+.|-++++|.+|+||.|-+-++- |+.|. -.+|+.
T Consensus 379 eAsCLIMTTEILRsMLY-------rgadliRDvE~VIFDEVHYiND~eRGvVWEEVi------IMlP~H----------- 434 (1248)
T KOG0947|consen 379 EASCLIMTTEILRSMLY-------RGADLIRDVEFVIFDEVHYINDVERGVVWEEVI------IMLPRH----------- 434 (1248)
T ss_pred CcceEeehHHHHHHHHh-------cccchhhccceEEEeeeeecccccccccceeee------eecccc-----------
Confidence 47789999888888886 578889999999999999986543 76543 446764
Q ss_pred hhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccccc--ccceeEEEEE----------------
Q 004428 527 WYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKV--LLNVRQIYER---------------- 588 (754)
Q Consensus 527 w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v--~~~I~Q~f~r---------------- 588 (754)
=|-||+|||.|-... +.+|.|+++-+..|. |+.. ..++.+.++-
T Consensus 435 ----------V~~IlLSATVPN~~E------FA~WIGRtK~K~IyV--iST~kRPVPLEh~l~t~~~l~kiidq~g~fl~ 496 (1248)
T KOG0947|consen 435 ----------VNFILLSATVPNTLE------FADWIGRTKQKTIYV--ISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLL 496 (1248)
T ss_pred ----------ceEEEEeccCCChHH------HHHHhhhccCceEEE--EecCCCccceEEEEEeccceehhhcccchhhh
Confidence 689999999984321 223445543332221 0000 1112221110
Q ss_pred ---------e---------ccCc---------------cc-------chhHHHHH--HHHHHHhHHhhhcCCCcEEEEec
Q 004428 589 ---------F---------NADS---------------IA-------KADDARLE--YFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 589 ---------~---------~~~s---------------~~-------~~~d~Rf~--yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
. ..++ .. .....|.+ -.+ .++-.|.+...-+++|||=
T Consensus 497 ~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l-~lin~L~k~~lLP~VvFvF 575 (1248)
T KOG0947|consen 497 KGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWL-DLINHLRKKNLLPVVVFVF 575 (1248)
T ss_pred hcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHH-HHHHHHhhcccCceEEEEE
Confidence 0 0000 00 00011221 111 2444455667789999999
Q ss_pred chhcHHHHHHHHHhCCCceEe----e------------cCCCCHHHHHHHHH-----------------------HHhcC
Q 004428 627 SYFEFVRLRNFLKSQNASFCL----L------------GDYTEPSDISRARV-----------------------WFFEG 667 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~----I------------hey~sq~~r~rar~-----------------------~F~~G 667 (754)
|+..+++-+.+|...++.-.. | .++..-.++.++++ .|..|
T Consensus 576 SkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG 655 (1248)
T KOG0947|consen 576 SKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG 655 (1248)
T ss_pred ccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC
Confidence 999999999998765432111 1 11111122244433 47888
Q ss_pred CccEEEEcccccccCccccCCCCeEEEccCCCC---------CCchhhhccccCCCC---CceEEEEechh
Q 004428 668 KRKMILYTERSHFYHRYKIRGIQNLIIYSLPER---------KEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 668 ~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~---------pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
=++||.|||-+| =|...+ .+.|||-++-.+ |--|..+.||.||-| .|+++.+....
T Consensus 656 lVKVLFATETFA--MGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 656 LVKVLFATETFA--MGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ceEEEeehhhhh--hhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 899999999988 888885 688998887643 556999999999876 68888877544
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00024 Score=86.22 Aligned_cols=330 Identities=15% Similarity=0.217 Sum_probs=207.1
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
...+.+.+..+.+-+=|+.+..|| .|||-----=+|.+...+
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTG---------cGKTTQvpQfiLd~~~~~----------------------------- 216 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETG---------CGKTTQVPQFILDEAIES----------------------------- 216 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCC---------CCchhhhhHHHHHHHHhc-----------------------------
Confidence 567788889999999999999998 566655445556666543
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCC
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPS 418 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~ 418 (754)
| ...++++==|-|=.|.-|.+.+.+=-... -|..
T Consensus 217 --~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~--------------~g~~----------------------------- 250 (924)
T KOG0920|consen 217 --G-AACNIICTQPRRISAISVAERVAKERGES--------------LGEE----------------------------- 250 (924)
T ss_pred --C-CCCeEEecCCchHHHHHHHHHHHHHhccc--------------cCCe-----------------------------
Confidence 1 23456777798988888887776421110 0100
Q ss_pred CceeeccCCCCCcccccccccHHHHhhhcc-cCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 419 DYQILFGGNNDDNFSIGIKFTRKSIKLYND-FYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 419 D~~~lF~GN~dD~FriGik~trk~lkLys~-Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
+|-+ ++|.+. ....-|..||-|=|...+.. .-+|+++-.+|+||++.=- .
T Consensus 251 ---------------VGYq-----vrl~~~~s~~t~L~fcTtGvLLr~L~~--------~~~l~~vthiivDEVHER~-i 301 (924)
T KOG0920|consen 251 ---------------VGYQ-----VRLESKRSRETRLLFCTTGVLLRRLQS--------DPTLSGVTHIIVDEVHERS-I 301 (924)
T ss_pred ---------------eeEE-----EeeecccCCceeEEEecHHHHHHHhcc--------CcccccCceeeeeeEEEcc-C
Confidence 0111 111111 13467899999988887752 2379999999999998543 3
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeec-cc----
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACE-YK---- 572 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~-~~---- 572 (754)
|-+.+..+++.| +|+. ..=+.||.|||++ ..+|+.|+.+.+ .+.+.-. ++
T Consensus 302 ~~DflLi~lk~l--L~~~-------------------p~LkvILMSAT~d---ae~fs~YF~~~p-vi~i~grtfpV~~~ 356 (924)
T KOG0920|consen 302 NTDFLLILLKDL--LPRN-------------------PDLKVILMSATLD---AELFSDYFGGCP-VITIPGRTFPVKEY 356 (924)
T ss_pred CcccHHHHHHHH--hhhC-------------------CCceEEEeeeecc---hHHHHHHhCCCc-eEeecCCCcchHHH
Confidence 567788777765 3331 1246899999999 556788877643 4444210 00
Q ss_pred ---Cccccc---ccceeEEEEEeccCc-------ccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHH
Q 004428 573 ---GVLPKV---LLNVRQIYERFNADS-------IAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 573 ---g~i~~v---~~~I~Q~f~r~~~~s-------~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
.++..+ ...-.+. ..+..+ ..-.++.-+. ++..++-.|.. ...+.+|||.|.|.+-..+.+.|
T Consensus 357 fLEDil~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~~-Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L 433 (924)
T KOG0920|consen 357 FLEDILSKTGYVSEDDSAR--SGPERSQLRLARLKLWEPEIDYD-LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELL 433 (924)
T ss_pred HHHHHHHHhcccccccccc--cccccCccccccchhccccccHH-HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHh
Confidence 011111 1111111 000000 0001111111 23334444433 45789999999999999999999
Q ss_pred HhC-------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC---------
Q 004428 639 KSQ-------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE--------- 702 (754)
Q Consensus 639 k~~-------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe--------- 702 (754)
... .+-...+|.-++..+..+.-..-=.|..+|+++|-.|. =.+.|.+|-.||.-++=.-.-
T Consensus 434 ~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE--TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~ 511 (924)
T KOG0920|consen 434 EVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE--TSITIDDVVYVIDSGLVKEKSYDPERKVSC 511 (924)
T ss_pred hhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh--hcccccCeEEEEecCeeeeeeecccCCcch
Confidence 642 25567799999998888877777789999999999999 999999999999655432211
Q ss_pred ---chh------hhccccCCCCCceEEEEechhcHHHH
Q 004428 703 ---FYP------EIVNMLEGSHNMTCTVLFSRFDMLRL 731 (754)
Q Consensus 703 ---fY~------erigrt~ra~~g~~~~L~sk~D~~~L 731 (754)
.++ .|.||.||-..|.|.-||++....++
T Consensus 512 l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 512 LLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKL 549 (924)
T ss_pred hheeeccccchHHhcccccCccCCeeEEeechhhhhhc
Confidence 122 23445555557999999997765443
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00098 Score=81.98 Aligned_cols=316 Identities=15% Similarity=0.159 Sum_probs=193.9
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
+|. +-|.|++++.++..+.-|+.||+|| +| ...-+-|+++. .++.
T Consensus 117 ~F~--LD~fQ~~a~~~Ler~esVlV~ApTs---sG----KTvVaeyAi~~---al~~----------------------- 161 (1041)
T COG4581 117 PFE--LDPFQQEAIAILERGESVLVCAPTS---SG----KTVVAEYAIAL---ALRD----------------------- 161 (1041)
T ss_pred CCC--cCHHHHHHHHHHhCCCcEEEEccCC---CC----cchHHHHHHHH---HHHc-----------------------
Confidence 554 4689999999999999999999998 32 33335677663 1111
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
.-||....|.+.|.-|....|......- .+..|
T Consensus 162 -----------~qrviYTsPIKALsNQKyrdl~~~fgdv-----------~~~vG------------------------- 194 (1041)
T COG4581 162 -----------GQRVIYTSPIKALSNQKYRDLLAKFGDV-----------ADMVG------------------------- 194 (1041)
T ss_pred -----------CCceEeccchhhhhhhHHHHHHHHhhhh-----------hhhcc-------------------------
Confidence 1238999999999999998887653210 01112
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD 492 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD 492 (754)
+..|. +.+. ..+.++|.|-==||-.+- ++.+.+--|+.+|+||.|
T Consensus 195 ----------L~TGD--------v~IN----------~~A~clvMTTEILRnMly-------rg~~~~~~i~~ViFDEvH 239 (1041)
T COG4581 195 ----------LMTGD--------VSIN----------PDAPCLVMTTEILRNMLY-------RGSESLRDIEWVVFDEVH 239 (1041)
T ss_pred ----------ceecc--------eeeC----------CCCceEEeeHHHHHHHhc-------cCcccccccceEEEEeee
Confidence 12221 1111 358899999866776665 455678999999999999
Q ss_pred hhhhcC----chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC--HHHHHHHHHhhcCCCceEE
Q 004428 493 IILMQN----WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN--PEINAFFNHHCANYQGKVK 566 (754)
Q Consensus 493 ~mLmQN----w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~--peinsL~~~~~~N~~G~Vk 566 (754)
-|-++. |+.+. -.+|.. =|-++||||.+ .++...+.+. +..+-.|.
T Consensus 240 yi~D~eRG~VWEE~I------i~lP~~---------------------v~~v~LSATv~N~~EF~~Wi~~~-~~~~~~vv 291 (1041)
T COG4581 240 YIGDRERGVVWEEVI------ILLPDH---------------------VRFVFLSATVPNAEEFAEWIQRV-HSQPIHVV 291 (1041)
T ss_pred eccccccchhHHHHH------HhcCCC---------------------CcEEEEeCCCCCHHHHHHHHHhc-cCCCeEEE
Confidence 997433 55432 235653 48999999998 3444444321 22111121
Q ss_pred EeecccCcccccccceeE-------EEEEeccCcc--------------------cchhH-----------------HHH
Q 004428 567 LACEYKGVLPKVLLNVRQ-------IYERFNADSI--------------------AKADD-----------------ARL 602 (754)
Q Consensus 567 v~~~~~g~i~~v~~~I~Q-------~f~r~~~~s~--------------------~~~~d-----------------~Rf 602 (754)
.....+ .++.| +|--++.... .+..+ .+-
T Consensus 292 ~t~~Rp-------vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (1041)
T COG4581 292 STEHRP-------VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGP 364 (1041)
T ss_pred eecCCC-------CCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCccccc
Confidence 111100 01111 1111111100 00000 000
Q ss_pred HHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC----------------------------CCc----------
Q 004428 603 EYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ----------------------------NAS---------- 644 (754)
Q Consensus 603 ~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~----------------------------~~~---------- 644 (754)
..+ ..++..+.....-++++||=|..+|......|... +++
T Consensus 365 ~~~-~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L 443 (1041)
T COG4581 365 AGR-PEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALL 443 (1041)
T ss_pred ccc-hHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHH
Confidence 000 12444555556778999999999998877766421 111
Q ss_pred ---eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC---------CCCCCchhhhccccC
Q 004428 645 ---FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL---------PERKEFYPEIVNMLE 712 (754)
Q Consensus 645 ---f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l---------P~~pefY~erigrt~ 712 (754)
.+.=|..+=+.-+...=..|..|-++|+.+||.++ -|+..+ +++|+|+.+ +-.|.-|..+.||.|
T Consensus 444 ~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s--~GiNmP-artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAG 520 (1041)
T COG4581 444 LRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFA--IGINMP-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAG 520 (1041)
T ss_pred hhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhh--hhcCCc-ccceeeeeeEEecCCceeecChhHHHHhhhhhc
Confidence 01123444455555566789999999999999988 997774 789999987 556778999999999
Q ss_pred CCC---CceEEEEec
Q 004428 713 GSH---NMTCTVLFS 724 (754)
Q Consensus 713 ra~---~g~~~~L~s 724 (754)
|.| .|+++++-.
T Consensus 521 RRGlD~~G~vI~~~~ 535 (1041)
T COG4581 521 RRGLDVLGTVIVIEP 535 (1041)
T ss_pred cccccccceEEEecC
Confidence 876 588888744
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00026 Score=82.32 Aligned_cols=203 Identities=18% Similarity=0.157 Sum_probs=128.8
Q ss_pred CCceeEEEEecchhh-hhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 480 LSSIEVLIIDHADII-LMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 480 LSSIEiLVlDeAD~m-LmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
|+|-.++||||||-= | |..-+|..+ -|+.|+|+= =-.|+-|||+..+= |+.|+
T Consensus 376 LasYSViiiDEAHERTL-----~TDILfgLv---------KDIar~Rpd---------LKllIsSAT~DAek---FS~fF 429 (902)
T KOG0923|consen 376 LASYSVIIVDEAHERTL-----HTDILFGLV---------KDIARFRPD---------LKLLISSATMDAEK---FSAFF 429 (902)
T ss_pred ccceeEEEeehhhhhhh-----hhhHHHHHH---------HHHHhhCCc---------ceEEeeccccCHHH---HHHhc
Confidence 999999999999853 2 122222222 156666632 24688899999763 33444
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
-+.+ |-..|.. --+|.-.|..-+. .| .+..-+.+||..-..+..+-+|||..--.++..+...|
T Consensus 430 Ddap--IF~iPGR-------RyPVdi~Yt~~PE------Ad-YldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l 493 (902)
T KOG0923|consen 430 DDAP--IFRIPGR-------RYPVDIFYTKAPE------AD-YLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENL 493 (902)
T ss_pred cCCc--EEeccCc-------ccceeeecccCCc------hh-HHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHH
Confidence 4433 3333221 0112222222111 11 22222333432223345688999999998888888877
Q ss_pred Hh---------CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh--
Q 004428 639 KS---------QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI-- 707 (754)
Q Consensus 639 k~---------~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er-- 707 (754)
+. ..+-.+.|+..+++....+.-.--=.|-.+|.|||..|- --+.|.||..||.=+.-.. .-|.-|
T Consensus 494 ~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAE--TSlTIdgI~yViDpGf~K~-nsynprtG 570 (902)
T KOG0923|consen 494 KERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAE--TSLTIDGIKYVIDPGFVKQ-NSYNPRTG 570 (902)
T ss_pred HHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchh--hceeecCeEEEecCccccc-cCcCCCcC
Confidence 54 257789999999999888776656678899999999999 9999999999996444321 123333
Q ss_pred -----------------ccccCCCCCceEEEEechhc
Q 004428 708 -----------------VNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 708 -----------------igrt~ra~~g~~~~L~sk~D 727 (754)
.||.||.+-|.|.-|||.|-
T Consensus 571 mesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~a 607 (902)
T KOG0923|consen 571 MESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWA 607 (902)
T ss_pred ceeEEEeeechhhhhhhccccCCCCCCceEEeechhh
Confidence 44444555799999999764
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0049 Score=71.05 Aligned_cols=195 Identities=15% Similarity=0.233 Sum_probs=129.4
Q ss_pred CceeEEEEecchhhh--hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 481 SSIEVLIIDHADIIL--MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 481 SSIEiLVlDeAD~mL--mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
.-.|+.||||.-.|- .-.|..-..++... -++.|- .| .|.+-.|.++.|
T Consensus 274 ~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~---AdEiHL-----------CG---------------epsvldlV~~i~ 324 (700)
T KOG0953|consen 274 TPYEVAVIDEIQMMRDPSRGWAWTRALLGLA---ADEIHL-----------CG---------------EPSVLDLVRKIL 324 (700)
T ss_pred CceEEEEehhHHhhcCcccchHHHHHHHhhh---hhhhhc-----------cC---------------CchHHHHHHHHH
Confidence 357899999999886 45677666555431 222211 11 244555666655
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
.--.-.|.+ ..|.|+..-.+. ..++-.|..-..+-++ .|=|+.+---+...+
T Consensus 325 k~TGd~vev----------------~~YeRl~pL~v~-----------~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kI 376 (700)
T KOG0953|consen 325 KMTGDDVEV----------------REYERLSPLVVE-----------ETALGSLSNLKPGDCV-VAFSKKDIFTVKKKI 376 (700)
T ss_pred hhcCCeeEE----------------EeecccCcceeh-----------hhhhhhhccCCCCCeE-EEeehhhHHHHHHHH
Confidence 542212222 235555433321 1344445443444444 455777877888888
Q ss_pred HhCCCc-eEeecCCCCHHHHHHHHHHHhc--CCccEEEEcccccccCccccCCCCeEEEccCCCCCCc---------hhh
Q 004428 639 KSQNAS-FCLLGDYTEPSDISRARVWFFE--GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF---------YPE 706 (754)
Q Consensus 639 k~~~~~-f~~Ihey~sq~~r~rar~~F~~--G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef---------Y~e 706 (754)
.+.+.. ++.|.|...+.-|..--..|.+ +++.||||||-.. =|+.+ +|++||||++=.+..- -..
T Consensus 377 E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIG--MGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQ 453 (700)
T KOG0953|consen 377 EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIG--MGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQ 453 (700)
T ss_pred HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccc--ccccc-ceeEEEEeecccCCcccceeccHHHHHH
Confidence 887665 9999999999999888888987 9999999999988 99998 9999999999743321 233
Q ss_pred hccccCCCC----CceEEEEechhcHHHHHHHhC
Q 004428 707 IVNMLEGSH----NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 707 rigrt~ra~----~g~~~~L~sk~D~~~LErIVG 736 (754)
+.||.||-+ .|.+++|. +.|...|-+|+.
T Consensus 454 IAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 454 IAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILK 486 (700)
T ss_pred HhhcccccccCCcCceEEEee-HhhHHHHHHHHh
Confidence 467877654 58888876 467888877765
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0053 Score=74.85 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=95.1
Q ss_pred HHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCcc
Q 004428 608 KVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRY 684 (754)
Q Consensus 608 ~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~ 684 (754)
.|+..+.. ....+|||-+.|-..-..|.+.|++.+++.-.++.--. ++...+-. ..|+ -.|-|||-.|. ||-
T Consensus 437 Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAG--RGT 511 (913)
T PRK13103 437 AIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAG--RGT 511 (913)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCC--CCC
Confidence 44444433 34678999999999999999999999998877665322 22222211 4564 58999999999 999
Q ss_pred ccC-------------------------------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechh
Q 004428 685 KIR-------------------------------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRF 726 (754)
Q Consensus 685 dIk-------------------------------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~ 726 (754)
||+ |==|||-=..|++--.=..+-||+||-|+ |++.-++|-.
T Consensus 512 DIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlE 591 (913)
T PRK13103 512 DILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 591 (913)
T ss_pred CEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcC
Confidence 997 55689988888866555555688998874 7777777766
Q ss_pred cHHHHHHHhCchHHHHhhh
Q 004428 727 DMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 727 D~~~LErIVGt~ra~~m~~ 745 (754)
|-+. |+.|..|..+|+.
T Consensus 592 D~Lm--r~fg~~~~~~~~~ 608 (913)
T PRK13103 592 DSLM--RIFASDRVKNFMK 608 (913)
T ss_pred cHHH--HhhCcHHHHHHHH
Confidence 6332 5688888888775
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0034 Score=74.98 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=93.2
Q ss_pred HHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCcc
Q 004428 608 KVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRY 684 (754)
Q Consensus 608 ~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~ 684 (754)
.|+..+.. ....++||.+.|-.....|...|++.+++...|+..-...+ ..+ -=..|+ -.|-|||-.|. ||-
T Consensus 415 Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E--A~I-Ia~AG~~gaVTIATNMAG--RGT 489 (764)
T PRK12326 415 AIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE--ARI-IAEAGKYGAVTVSTQMAG--RGT 489 (764)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH--HHH-HHhcCCCCcEEEEecCCC--Ccc
Confidence 34444433 35678999999999999999999999999999987533333 111 114464 48999999999 999
Q ss_pred ccC---------------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCch
Q 004428 685 KIR---------------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 685 dIk---------------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ 738 (754)
||+ |==|||--..|++--.=..+.||+||-|+ |++.-+.|-.|-+. ++.|..
T Consensus 490 DIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~--~~f~~~ 557 (764)
T PRK12326 490 DIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVV--AANLAG 557 (764)
T ss_pred CeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHH--HhcCch
Confidence 998 55699999999987777777899999884 77777777666332 555654
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0024 Score=76.44 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC----CCc-eEeecCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCccccCCCC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ----NAS-FCLLGDYTEPSDISRARVWFFEGK--RKMILYTERSHFYHRYKIRGIQ 690 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~----~~~-f~~Ihey~sq~~r~rar~~F~~G~--~~ILL~TErahffRr~dIkgV~ 690 (754)
.++|||||.+...+.+|++.|.++ +-. +..|-+..++.+.. +..|...+ =+|-|+.|... =|+|++-|.
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~--Id~f~~ke~~P~IaitvdlL~--TGiDvpev~ 501 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQAL--IDNFIDKEKYPRIAITVDLLT--TGVDVPEVV 501 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHHH--HHHHHhcCCCCceEEehhhhh--cCCCchhee
Confidence 689999999999999999999875 223 44577766666554 66666533 37889999999 999999999
Q ss_pred eEEEccCCCCCCchhhhccccCCC
Q 004428 691 NLIIYSLPERKEFYPEIVNMLEGS 714 (754)
Q Consensus 691 ~VIfY~lP~~pefY~erigrt~ra 714 (754)
++||+.+=.+---|-.|+||.-|.
T Consensus 502 nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 502 NLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999997654
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0078 Score=70.74 Aligned_cols=199 Identities=16% Similarity=0.165 Sum_probs=124.6
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
.|-.-.++|||||+.=-- |-+-+.-+++.+-.--. -=..|+-||||..+= |..|+
T Consensus 465 ~L~kYSviImDEAHERsl-NtDilfGllk~~larRr---------------------dlKliVtSATm~a~k---f~nfF 519 (1042)
T KOG0924|consen 465 DLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRR---------------------DLKLIVTSATMDAQK---FSNFF 519 (1042)
T ss_pred hhhheeEEEechhhhccc-chHHHHHHHHHHHHhhc---------------------cceEEEeeccccHHH---HHHHh
Confidence 367788999999985421 44444444444311100 124688999999652 22333
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh----cCCCcEEEEecchhcHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD----SIQGGIMLFLSSYFEFVRL 634 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~----~~~~~tLIFv~Sy~d~vrl 634 (754)
-|.++. .| +|. .-+|.-+|.+.++.+ . +...+++... ...+-+|||++-..|..-.
T Consensus 520 gn~p~f-~I----pGR----TyPV~~~~~k~p~eD-------Y----Veaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 520 GNCPQF-TI----PGR----TYPVEIMYTKTPVED-------Y----VEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred CCCcee-ee----cCC----ccceEEEeccCchHH-------H----HHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 444311 11 121 123555566655432 2 3345555432 3458899999977665443
Q ss_pred ----HHHHHh------CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 635 ----RNFLKS------QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 635 ----rn~Lk~------~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
...|.. .++.+..|..-+++.-..+.-+.--.|-.+++|||.+|- --+.|+||..||.-+.-.-. .|
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAE--TSLTi~gI~yVID~Gy~K~k-vy 656 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAE--TSLTIPGIRYVIDTGYCKLK-VY 656 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchh--hceeecceEEEEecCceeee-ec
Confidence 333332 267788888888887777766656678899999999999 99999999999987765422 23
Q ss_pred hhhcc-------------------ccCCCCCceEEEEech
Q 004428 705 PEIVN-------------------MLEGSHNMTCTVLFSR 725 (754)
Q Consensus 705 ~erig-------------------rt~ra~~g~~~~L~sk 725 (754)
.-++| |.||.+.|+|.-|||.
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe 696 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTE 696 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCCCcceeeehhh
Confidence 34444 4444457999999996
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=74.27 Aligned_cols=213 Identities=15% Similarity=0.135 Sum_probs=147.0
Q ss_pred cccCCceeEEEEecchhhh-----hcCch--HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 477 VDYLSSIEVLIIDHADIIL-----MQNWS--WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 477 ~dfLSSIEiLVlDeAD~mL-----mQNw~--hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
+||+..==+|||||-|+.+ |=|-+ --..+.++=-.+|+-.. =|+--.+.|.++..|||..|||..+.
T Consensus 326 ~DYfp~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlD------NRPL~feEf~~~~~q~i~VSATPg~~ 399 (663)
T COG0556 326 FDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALD------NRPLKFEEFEAKIPQTIYVSATPGDY 399 (663)
T ss_pred HHhCCcceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCccccc------CCCCCHHHHHHhcCCEEEEECCCChH
Confidence 4455555679999999986 33433 23445555455665311 12222344566779999999999875
Q ss_pred HHHHHHHhhcCCCceE-E-EeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEe
Q 004428 550 INAFFNHHCANYQGKV-K-LACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFL 625 (754)
Q Consensus 550 insL~~~~~~N~~G~V-k-v~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv 625 (754)
=.... . |.| . +.. .+|.+... | -.|--.. +. | -++..|.. ....++||-+
T Consensus 400 E~e~s----~---~~vveQiIR-PTGLlDP~---i---evRp~~~---Qv-d--------DL~~EI~~r~~~~eRvLVTt 453 (663)
T COG0556 400 ELEQS----G---GNVVEQIIR-PTGLLDPE---I---EVRPTKG---QV-D--------DLLSEIRKRVAKNERVLVTT 453 (663)
T ss_pred HHHhc----c---CceeEEeec-CCCCCCCc---e---eeecCCC---cH-H--------HHHHHHHHHHhcCCeEEEEe
Confidence 43322 1 122 1 111 13533211 1 1121111 11 2 24444433 3458999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC-----CCC
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL-----PER 700 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l-----P~~ 700 (754)
=|+.-+.-|..||+..|+.+.-+|....-=+|...+...+.|...|||---..- -|+||+.|..|...|- ..+
T Consensus 454 LTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLR--EGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 454 LTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR--EGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred ehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhh--ccCCCcceeEEEEeecCccccccc
Confidence 999999999999999999999999999999999999999999999999999999 9999999999998874 444
Q ss_pred CCchhhhccccCCCCCceEEEEec
Q 004428 701 KEFYPEIVNMLEGSHNMTCTVLFS 724 (754)
Q Consensus 701 pefY~erigrt~ra~~g~~~~L~s 724 (754)
----+..|||.+|+.+|.|+- |.
T Consensus 532 e~SLIQtIGRAARN~~GkvIl-YA 554 (663)
T COG0556 532 ERSLIQTIGRAARNVNGKVIL-YA 554 (663)
T ss_pred cchHHHHHHHHhhccCCeEEE-Ec
Confidence 445566789999998999874 54
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0094 Score=72.44 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=53.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~dIk 687 (754)
...+|||-+.|-..-..|.+.|++.+++.-.++....+.++...+=. ..|+ -.|-|||-.|. ||-||+
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA-~AG~~G~VTIATNMAG--RGTDI~ 491 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVA-QAGRKGSITIATNMAG--RGTDII 491 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHH-hcCCCCcEEEeccccC--CCcCee
Confidence 46789999999999999999999999999999886433222222111 2465 58999999999 999987
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.017 Score=70.23 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEE
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILY 674 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~ 674 (754)
.++++.. |+..+.. ....++||.|.|-.....|.++|++.|++...++.. +.++...+=. ..|+ -.|.||
T Consensus 408 ~~~K~~A----ii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIA 480 (925)
T PRK12903 408 KHAKWKA----VVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIA 480 (925)
T ss_pred HHHHHHH----HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEe
Confidence 4567664 4444433 245789999999999999999999999999888874 3344433332 5574 589999
Q ss_pred cccccccCccccCCCC--------eEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCc-hHHHHhh
Q 004428 675 TERSHFYHRYKIRGIQ--------NLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGS-AHAKKMV 744 (754)
Q Consensus 675 TErahffRr~dIkgV~--------~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt-~ra~~m~ 744 (754)
|-.|. ||-||+=-. |||.-..|++--.=-.+-||+||-|+ |++.-+.|-.|-+ =|+.|. +|...|+
T Consensus 481 TNMAG--RGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L--~r~f~~~~ri~~~~ 556 (925)
T PRK12903 481 TNMAG--RGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL--FRRFSNFDKIKEAF 556 (925)
T ss_pred ccccc--CCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHH--HHHhCCHHHHHHHH
Confidence 99999 999998433 99999999987777788899999884 7777777766633 366888 7777776
Q ss_pred hc
Q 004428 745 KS 746 (754)
Q Consensus 745 ~s 746 (754)
..
T Consensus 557 ~~ 558 (925)
T PRK12903 557 KK 558 (925)
T ss_pred Hh
Confidence 53
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0011 Score=65.62 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=64.9
Q ss_pred hhcCCCcEEEEecchhcHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC--C
Q 004428 614 KDSIQGGIMLFLSSYFEFVRLRNFLKSQNA--SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG--I 689 (754)
Q Consensus 614 ~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~--~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg--V 689 (754)
.....+++|||+|||..-..+.++++.... ....+.+ +...+...++.|+.++..||+++-+..|+-|+|++| .
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 344569999999999999999999987642 2233444 477888899999999999999999888889999998 8
Q ss_pred CeEEEccCCC
Q 004428 690 QNLIIYSLPE 699 (754)
Q Consensus 690 ~~VIfY~lP~ 699 (754)
+.||-.+||-
T Consensus 83 r~vii~glPf 92 (167)
T PF13307_consen 83 RAVIIVGLPF 92 (167)
T ss_dssp EEEEEES---
T ss_pred heeeecCCCC
Confidence 8999999994
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.096 Score=63.32 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHHhC--CCceEeecCCCCHHH--HHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccC------CCC
Q 004428 631 FVRLRNFLKSQ--NASFCLLGDYTEPSD--ISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSL------PER 700 (754)
Q Consensus 631 ~vrlrn~Lk~~--~~~f~~Ihey~sq~~--r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~l------P~~ 700 (754)
..||..-|++. ++.+..+..+++..+ -...+..|..|+..|||-|-..+ .|+++++|..|.-.+. |+.
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmia--KG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIA--KGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhh--cCCCcccceEEEEEechhhhcCCCc
Confidence 35666666664 788888888888766 45678999999999999999999 9999999999876543 321
Q ss_pred ------CCchhhhccccCCCC-CceEE
Q 004428 701 ------KEFYPEIVNMLEGSH-NMTCT 720 (754)
Q Consensus 701 ------pefY~erigrt~ra~-~g~~~ 720 (754)
...|....||.||.+ .|.++
T Consensus 571 RA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred chHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 122555678888875 45443
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.25 Score=59.66 Aligned_cols=153 Identities=19% Similarity=0.239 Sum_probs=79.9
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcc
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLD 530 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~ 530 (754)
...|-+-|-|=|+.-|++ |+. |+.-.++||||||-=-| |-+-+.-++..+ -|+|.-|-.
T Consensus 349 ~T~IkFMTDGVLLrEi~~-------Dfl-L~kYSvIIlDEAHERSv-nTDILiGmLSRi------------V~LR~k~~k 407 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIEN-------DFL-LTKYSVIILDEAHERSV-NTDILIGMLSRI------------VPLRQKYYK 407 (1172)
T ss_pred CceeEEecchHHHHHHHH-------hHh-hhhceeEEechhhhccc-hHHHHHHHHHHH------------HHHHHHHhh
Confidence 356777788888877762 342 78999999999986544 334344444332 133333222
Q ss_pred cCC--CccccEEEEcCCCCHH-HHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHH
Q 004428 531 GYS--RFYRQTVLLSYHPNPE-INAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTK 607 (754)
Q Consensus 531 ~~a--k~~RQTllFSAt~~pe-insL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~ 607 (754)
.+. +.. -.|+.|||+--. +.+ -++.+.+++-.|+|... + -.|.-.|.+ .+ .+|.--..|.+
T Consensus 408 e~~~~kpL-KLIIMSATLRVsDFte-nk~LFpi~pPlikVdAR------Q--fPVsIHF~k---rT---~~DYi~eAfrK 471 (1172)
T KOG0926|consen 408 EQCQIKPL-KLIIMSATLRVSDFTE-NKRLFPIPPPLIKVDAR------Q--FPVSIHFNK---RT---PDDYIAEAFRK 471 (1172)
T ss_pred hhcccCce-eEEEEeeeEEeccccc-CceecCCCCceeeeecc------c--CceEEEecc---CC---CchHHHHHHHH
Confidence 111 111 258889998632 100 01112233323333211 1 112223333 22 22333344444
Q ss_pred HHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC
Q 004428 608 KVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ 641 (754)
Q Consensus 608 ~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~ 641 (754)
+.. .-.+...+++||||--..+...|-..|++.
T Consensus 472 tc~-IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 472 TCK-IHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred HHH-HhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 332 123346899999999999988888877654
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.028 Score=67.75 Aligned_cols=90 Identities=14% Similarity=0.224 Sum_probs=67.4
Q ss_pred HhhhcCCCcEEEEecchhcHHHHHHHHHhCCC------ceEeecCCCCHHHHHHHHHHHhc----CCccEEEEccccccc
Q 004428 612 KIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA------SFCLLGDYTEPSDISRARVWFFE----GKRKMILYTERSHFY 681 (754)
Q Consensus 612 ~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~------~f~~Ihey~sq~~r~rar~~F~~----G~~~ILL~TErahff 681 (754)
.+....++++|||.|||.--..+...+++.++ ....+.|-....++.+.++.|+. |+-.||+++=+-.|.
T Consensus 516 ~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 516 EFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred HHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 33445679999999999998988888876532 12233343333578889999965 566799999555566
Q ss_pred CccccCC--CCeEEEccCCC-CC
Q 004428 682 HRYKIRG--IQNLIIYSLPE-RK 701 (754)
Q Consensus 682 Rr~dIkg--V~~VIfY~lP~-~p 701 (754)
-|+|++| .+.||..+||- +|
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCC
Confidence 9999999 79999999997 44
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.032 Score=67.23 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=60.4
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHh----cCCccEEEEcccccccCccccCC--C
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFF----EGKRKMILYTERSHFYHRYKIRG--I 689 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~----~G~~~ILL~TErahffRr~dIkg--V 689 (754)
..+++|||++||..-..+...|... +.. +.+++. ..+.+.+..|+ .|+..||++|.- |.-|+|++| .
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~s--f~EGVD~pGd~l 606 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQS--FAEGLDLPGDYL 606 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecc--ccccccCCCCce
Confidence 5678999999999999999999753 332 344442 24556665565 578899999954 669999998 7
Q ss_pred CeEEEccCCC-CCC
Q 004428 690 QNLIIYSLPE-RKE 702 (754)
Q Consensus 690 ~~VIfY~lP~-~pe 702 (754)
++||...||- .|+
T Consensus 607 ~~vII~kLPF~~p~ 620 (697)
T PRK11747 607 TQVIITKIPFAVPD 620 (697)
T ss_pred EEEEEEcCCCCCCC
Confidence 9999999994 453
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.89 Score=52.56 Aligned_cols=195 Identities=22% Similarity=0.204 Sum_probs=117.7
Q ss_pred cCCceeEEEEecchh------hhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHH
Q 004428 479 YLSSIEVLIIDHADI------ILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINA 552 (754)
Q Consensus 479 fLSSIEiLVlDeAD~------mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peins 552 (754)
+|++-.++|||||+. +||+ -+.+++. + -|. =..++.|||....
T Consensus 156 ~l~~y~viiLDeahERtlATDiLmG---llk~v~~--~-rpd----------------------Lk~vvmSatl~a~--- 204 (699)
T KOG0925|consen 156 LLGRYGVIILDEAHERTLATDILMG---LLKEVVR--N-RPD----------------------LKLVVMSATLDAE--- 204 (699)
T ss_pred ccccccEEEechhhhhhHHHHHHHH---HHHHHHh--h-CCC----------------------ceEEEeecccchH---
Confidence 699999999999985 3343 2233321 1 131 3478999999754
Q ss_pred HHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHH
Q 004428 553 FFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 553 L~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~v 632 (754)
-|++|..|.+ -+.|- | ...++- |+- +.+ + -.+++--+.+++..-.....+-+|||.+.-.+-.
T Consensus 205 Kfq~yf~n~P-ll~vp----g-----~~PvEi-~Yt---~e~--e-rDylEaairtV~qih~~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 205 KFQRYFGNAP-LLAVP----G-----THPVEI-FYT---PEP--E-RDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIE 267 (699)
T ss_pred HHHHHhCCCC-eeecC----C-----CCceEE-Eec---CCC--C-hhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHH
Confidence 3556777765 33332 2 112222 322 211 1 2356655555654444456789999999988877
Q ss_pred HHHHHHHhC---------CCceEeecCCCCHHHH-HHHHHHHhcC--CccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 633 RLRNFLKSQ---------NASFCLLGDYTEPSDI-SRARVWFFEG--KRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 633 rlrn~Lk~~---------~~~f~~Ihey~sq~~r-~rar~~F~~G--~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
..-..+..+ .+++..++ -.|.+| -+....=.+| ..+|.|.|-.|- --+.|.||.+||.-++-..
T Consensus 268 ~aC~~i~re~~~L~~~~g~l~v~PLy--P~~qq~iFep~p~~~~~~~~RkvVvstniae--tsltidgiv~VIDpGf~kq 343 (699)
T KOG0925|consen 268 DACRKISREVDNLGPQVGPLKVVPLY--PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE--TSLTIDGIVFVIDPGFSKQ 343 (699)
T ss_pred HHHHHHHHHHHhhccccCCceEEecC--chhhccccCCCCcccCCCccceEEEEecchh--eeeeeccEEEEecCchhhh
Confidence 666666532 35667777 222222 1111111123 369999999999 7799999999998776544
Q ss_pred CCchhhh-------------------ccccCCCCCceEEEEechh
Q 004428 701 KEFYPEI-------------------VNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 701 pefY~er-------------------igrt~ra~~g~~~~L~sk~ 726 (754)
.. |.-| .||.||..-|+|..||++.
T Consensus 344 kV-YNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 344 KV-YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred cc-cCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 33 3333 3444555579999999964
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.64 Score=55.99 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=85.0
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCce---------------Eeec-CCCCHHHHHHHH---------------
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASF---------------CLLG-DYTEPSDISRAR--------------- 661 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f---------------~~Ih-ey~sq~~r~rar--------------- 661 (754)
+......++|||.=|+.|+..++-.|.+..++- .+++ ++..-.++...+
T Consensus 378 i~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLL 457 (1041)
T KOG0948|consen 378 IMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLL 457 (1041)
T ss_pred HHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccch
Confidence 333456789999999999999998887765541 1111 222222222222
Q ss_pred --------HHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC---------CCchhhhccccCCCC---CceEEE
Q 004428 662 --------VWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER---------KEFYPEIVNMLEGSH---NMTCTV 721 (754)
Q Consensus 662 --------~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~---------pefY~erigrt~ra~---~g~~~~ 721 (754)
=.|..|=+++|.|||-|+ =|+..+ .++|+|-.+-.. .=-|+.+.||.||-| .|.|+.
T Consensus 458 PIlKE~IEILFqEGLvKvLFATETFs--iGLNMP-AkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIl 534 (1041)
T KOG0948|consen 458 PILKEVIEILFQEGLVKVLFATETFS--IGLNMP-AKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVIL 534 (1041)
T ss_pred HHHHHHHHHHHhccHHHHHHhhhhhh--hccCCc-ceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEE
Confidence 258889999999999988 999885 688888776532 234999999999876 699999
Q ss_pred EechhcHHHHHHHhCchHHHHhhhcCC
Q 004428 722 LFSRFDMLRLERIVGSAHAKKMVKSEK 748 (754)
Q Consensus 722 L~sk~D~~~LErIVGt~ra~~m~~s~~ 748 (754)
++... +.-.-|..|+++..
T Consensus 535 miDek--------m~~~~ak~m~kG~a 553 (1041)
T KOG0948|consen 535 MIDEK--------MEPQVAKDMLKGSA 553 (1041)
T ss_pred EecCc--------CCHHHHHHHhcCCC
Confidence 98643 22334556666554
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.036 Score=65.89 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=66.6
Q ss_pred hcCCCcEEEEecchhcHHHHHHHHHhCCCc-eEeecCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCccccCCC--C
Q 004428 615 DSIQGGIMLFLSSYFEFVRLRNFLKSQNAS-FCLLGDYTEPSDISRARVWFFEGKR-KMILYTERSHFYHRYKIRGI--Q 690 (754)
Q Consensus 615 ~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~-f~~Ihey~sq~~r~rar~~F~~G~~-~ILL~TErahffRr~dIkgV--~ 690 (754)
....+++|||+|||..-.++..+|+..... ....++ +..+...+..|+.+.- .|||+|..+. -|.|++|= +
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf~--EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG---EDEREELLEKFKASGEGLILVGGGSFW--EGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecC---CCcHHHHHHHHHHhcCCeEEEeecccc--CcccCCCCCee
Confidence 345679999999999999999999987664 333333 3344477888888776 9999999966 99999994 9
Q ss_pred eEEEccCCCC-CCch
Q 004428 691 NLIIYSLPER-KEFY 704 (754)
Q Consensus 691 ~VIfY~lP~~-pefY 704 (754)
.||...+|-- |+.+
T Consensus 551 ~vvI~~lPfp~p~dp 565 (654)
T COG1199 551 LVVIVGLPFPNPDDP 565 (654)
T ss_pred EEEEEecCCCCCCCH
Confidence 9999999965 4443
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.028 Score=60.71 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=58.7
Q ss_pred CCHHHHH----HhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRS----FFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~----~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
|.|.|.+ +...+.++..+++.++|| +|||.+|++++|.++......
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTG---------tGKTl~~L~~al~~~~~~~~~--------------------- 58 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTG---------TGKTLSLLCLTLTWLRSFPER--------------------- 58 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCC---------cchhHHHHHHHHHHHHhCccc---------------------
Confidence 5789988 666778899999999998 999999999999998654210
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
....|++++++|..+..|++..+.++
T Consensus 59 --------~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 59 --------IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred --------ccccceeEEeccHHHHHHHHHHHHhc
Confidence 02358999999999999988888776
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.028 Score=60.71 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=58.7
Q ss_pred CCHHHHH----HhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRS----FFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~----~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
|.|.|.+ +...+.++..+++.++|| +|||.+|++++|.++......
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTG---------tGKTl~~L~~al~~~~~~~~~--------------------- 58 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTG---------TGKTLSLLCLTLTWLRSFPER--------------------- 58 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCC---------cchhHHHHHHHHHHHHhCccc---------------------
Confidence 5789988 666778899999999998 999999999999998654210
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
....|++++++|..+..|++..+.++
T Consensus 59 --------~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 59 --------IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred --------ccccceeEEeccHHHHHHHHHHHHhc
Confidence 02358999999999999988888776
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.029 Score=59.78 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=33.4
Q ss_pred HHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEec
Q 004428 442 SIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 442 ~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
++++... ..+.|.||||+||..+|+. +...|+++.++|||-
T Consensus 169 qv~~L~~-~~~~i~vGTP~Rl~kLle~-------~~L~l~~l~~ivlD~ 209 (252)
T PF14617_consen 169 QVKLLKK-TRVHIAVGTPGRLSKLLEN-------GALSLSNLKRIVLDW 209 (252)
T ss_pred HHHHHHh-CCceEEEeChHHHHHHHHc-------CCCCcccCeEEEEcC
Confidence 4555443 4689999999999999973 577899999999995
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.7 Score=57.67 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEc
Q 004428 599 DARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYT 675 (754)
Q Consensus 599 d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~T 675 (754)
..+++ .|+..+.. ....+|||-+.|-..-..|...|++.+++.-.|+.-.- ++...+-. ..|+ -.|-|||
T Consensus 611 ~eK~~----Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA-~AG~~GaVTIAT 683 (1112)
T PRK12901 611 REKYN----AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVA-EAGQPGTVTIAT 683 (1112)
T ss_pred HHHHH----HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHH-hcCCCCcEEEec
Confidence 45555 45544443 35678999999999999999999999998777765432 22222211 3354 4899999
Q ss_pred ccccccCccccC--------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 676 ERSHFYHRYKIR--------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 676 ErahffRr~dIk--------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
-.|. ||-||+ |==|||--..|++.-.-..+-||+||-|+ |++.-++|-.|-+ =|+.|..|..+|+.
T Consensus 684 NMAG--RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL--mr~Fgs~ri~~~m~ 758 (1112)
T PRK12901 684 NMAG--RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL--MRLFGSERIAKVMD 758 (1112)
T ss_pred cCcC--CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH--HHhhCcHHHHHHHH
Confidence 9999 999999 77899999999988888888899999884 7777777766533 26689999988875
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.1 Score=56.60 Aligned_cols=313 Identities=14% Similarity=0.163 Sum_probs=167.9
Q ss_pred CHHHHHHhhhhhCCcc-EEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRD-ILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~D-vl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.|+|.++|+.+.+-+| |+.++++| +|||++-=+-+|+ ++
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~g---------sgkt~~ae~a~l~-----~~-------------------------- 1184 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNG---------SGKTACAELALLR-----PD-------------------------- 1184 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCC---------CchhHHHHHHhcC-----Cc--------------------------
Confidence 6899999999977665 55678777 8898877666655 11
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH-hCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR-LTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~-L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
+--++.-++|.-+.|........+ +....+ ++|...-|..
T Consensus 1185 -----~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G-------~~~~~l~ge~--------------------------- 1225 (1674)
T KOG0951|consen 1185 -----TIGRAVYIAPLEEIADEQYRDWEKKFSKLLG-------LRIVKLTGET--------------------------- 1225 (1674)
T ss_pred -----cceEEEEecchHHHHHHHHHHHHHhhccccC-------ceEEecCCcc---------------------------
Confidence 234789999999988776665543 333222 2444322211
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM 496 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm 496 (754)
. -.+||.+ ..+|||+||-.--.+ . ...++++.|.|+++.+--
T Consensus 1226 --------------------s---~~lkl~~---~~~vii~tpe~~d~l-q-----------~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1226 --------------------S---LDLKLLQ---KGQVIISTPEQWDLL-Q-----------SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred --------------------c---cchHHhh---hcceEEechhHHHHH-h-----------hhhhcceEeeehhhhhcc
Confidence 0 1244444 489999999885433 2 466789999999987763
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccc
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLP 576 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~ 576 (754)
++-. +..|+ |-..-|-.|. .+..|=.-| |..++ .++.++ .|.. .|.+-+.+..
T Consensus 1268 ~~g~-v~evi------------~S~r~ia~q~----~k~ir~v~l-s~~la-na~d~i--g~s~-~~v~Nf~p~~----- 1320 (1674)
T KOG0951|consen 1268 VYGA-VYEVI------------CSMRYIASQL----EKKIRVVAL-SSSLA-NARDLI--GASS-SGVFNFSPSV----- 1320 (1674)
T ss_pred cCCc-eEEEE------------eeHHHHHHHH----HhheeEEEe-ehhhc-cchhhc--cccc-cceeecCccc-----
Confidence 3221 11110 1100011111 122232222 22221 112221 1110 1111111110
Q ss_pred ccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHH---------------
Q 004428 577 KVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLK--------------- 639 (754)
Q Consensus 577 ~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk--------------- 639 (754)
... ++.-..+-|+... -+.|+.-.++-.+..+.+ ....+++||+|+..++..++--|.
T Consensus 1321 R~~-Pl~i~i~~~~~~~----~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~ 1395 (1674)
T KOG0951|consen 1321 RPV-PLEIHIQSVDISH----FESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSEL 1395 (1674)
T ss_pred CCC-ceeEEEEEeccch----hHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHH
Confidence 011 1222223343322 345555444445545543 346789999999877665543221
Q ss_pred -------hCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE------EccCCCCCC-ch-
Q 004428 640 -------SQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI------IYSLPERKE-FY- 704 (754)
Q Consensus 640 -------~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI------fY~lP~~pe-fY- 704 (754)
++.++.+.=|+.++..+..-.+..|..|.++|+|.+=+- - -++-..|+| +||--.+.. .|
T Consensus 1396 e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~~---~--~~~~~~~lVvvmgt~~ydg~e~~~~~y~ 1470 (1674)
T KOG0951|consen 1396 EECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRDC---Y--GTKLKAHLVVVMGTQYYDGKEHSYEDYP 1470 (1674)
T ss_pred hcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEccc---c--cccccceEEEEecceeecccccccccCc
Confidence 122333223999999999999999999999999988662 2 333333332 354443321 22
Q ss_pred ----hhhccccCCCCCceEEEEechhc
Q 004428 705 ----PEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 705 ----~erigrt~ra~~g~~~~L~sk~D 727 (754)
.+++|++.| .|.|+.+...-+
T Consensus 1471 i~~ll~m~G~a~~--~~k~vi~~~~~~ 1495 (1674)
T KOG0951|consen 1471 IAELLQMVGLASG--AGKCVIMCHTPK 1495 (1674)
T ss_pred hhHHHHHhhhhcC--CccEEEEecCch
Confidence 345555544 457887776544
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.54 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.2
Q ss_pred eEEEEccchhHHHHHHHHHHHhCC
Q 004428 346 KVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 346 kVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
++|||||. .+..++..++.+..+
T Consensus 60 ~~LIv~P~-~l~~~W~~E~~~~~~ 82 (299)
T PF00176_consen 60 KTLIVVPS-SLLSQWKEEIEKWFD 82 (299)
T ss_dssp -EEEEE-T-TTHHHHHHHHHHHSG
T ss_pred ceeEeecc-chhhhhhhhhccccc
Confidence 48999999 888999999999874
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.5 Score=54.61 Aligned_cols=213 Identities=13% Similarity=0.151 Sum_probs=135.2
Q ss_pred eeEEEEecchhhhhcCch------HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHH
Q 004428 483 IEVLIIDHADIILMQNWS------WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNH 556 (754)
Q Consensus 483 IEiLVlDeAD~mLmQNw~------hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~ 556 (754)
-.++|+||.|.+-..--. .|..+.+|+-++.- .--+||= +..|-|..+.-.|+.|.+-++..+
T Consensus 309 ~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSG---TPavSRP--------~elytqi~avd~tlfp~f~efa~r 377 (689)
T KOG1000|consen 309 YRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSG---TPAVSRP--------SELYTQIRAVDHTLFPNFHEFAIR 377 (689)
T ss_pred ceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecC---CcccCCc--------hhhhhhhhhhcccccccHHHHHHH
Confidence 468999999987532211 23333333322210 0112221 234677777777888889999999
Q ss_pred hhcCCCceEEEeecccC-----------------------cccccccceeEEEEEeccCcccchh---------------
Q 004428 557 HCANYQGKVKLACEYKG-----------------------VLPKVLLNVRQIYERFNADSIAKAD--------------- 598 (754)
Q Consensus 557 ~~~N~~G~Vkv~~~~~g-----------------------~i~~v~~~I~Q~f~r~~~~s~~~~~--------------- 598 (754)
||.- ++++..-.|+| ++.++.++=+++.+.. ........
T Consensus 378 YCd~--k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~-~gr~da~~~~lv~~a~~~t~~~~ 454 (689)
T KOG1000|consen 378 YCDG--KQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVS-GGRIDARMDDLVKAAADYTKVNS 454 (689)
T ss_pred hcCc--cccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEc-CCccchHHHHHHHHhhhcchhhh
Confidence 9875 45555555544 2334445533333332 22110000
Q ss_pred ----------------HHHHHHHHHHHhHH--hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHH
Q 004428 599 ----------------DARLEYFTKKVFPK--IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 599 ----------------d~Rf~yF~~~iLp~--l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ra 660 (754)
.++..-|...|+.. |.+....+.|||+.-..--+-|..++.+.++.+.-|.|.+....|.-+
T Consensus 455 ~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 455 MERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred hhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHH
Confidence 01112222223221 223456789999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccEEEEc-ccccccCccccCCCCeEEEccCCCCCCc------hhhhcccc
Q 004428 661 RVWFFEG-KRKMILYT-ERSHFYHRYKIRGIQNLIIYSLPERKEF------YPEIVNML 711 (754)
Q Consensus 661 r~~F~~G-~~~ILL~T-ErahffRr~dIkgV~~VIfY~lP~~pef------Y~erigrt 711 (754)
-+.|... +++|-|.+ .-+. =|+++.-.+.|||-.||-||-. =.||||-+
T Consensus 535 ~qsFQ~seev~VAvlsItA~g--vGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQk 591 (689)
T KOG1000|consen 535 CQSFQTSEEVRVAVLSITAAG--VGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQK 591 (689)
T ss_pred HHHhccccceEEEEEEEeecc--cceeeeccceEEEEEecCCCceEEechhhhhhcccc
Confidence 9999766 45554443 3344 7999999999999999999854 55666654
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.67 Score=55.95 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=89.8
Q ss_pred HHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCc
Q 004428 606 TKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK--RKMILYTERSHFYHR 683 (754)
Q Consensus 606 ~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~--~~ILL~TErahffRr 683 (754)
+.++||.|.. ...+||||-.-..--+-|-.|+.-.++.++-|.|.++-.+|.+|+..|..-. +-|.+.|=||. ==|
T Consensus 476 LDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG-GLG 553 (971)
T KOG0385|consen 476 LDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG-GLG 553 (971)
T ss_pred HHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc-ccc
Confidence 4577888764 4579999998888888888899999999999999999999999999997654 55656666665 367
Q ss_pred cccCCCCeEEEccCCCCCCchh---hhccccCCCCCceEEEEechh
Q 004428 684 YKIRGIQNLIIYSLPERKEFYP---EIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~---erigrt~ra~~g~~~~L~sk~ 726 (754)
+.+-.+..||+||=-=||+.=. .|+-|+|-.....|+-|+|..
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 8888999999999888887532 223333322234556677643
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.6 Score=58.43 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=90.4
Q ss_pred hcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-cc-EEEEcccccccCccccCCCCeE
Q 004428 615 DSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RK-MILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 615 ~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~-ILL~TErahffRr~dIkgV~~V 692 (754)
+....++|||..-..-.+-|-.+|..+|+-++-|.|.++-.+|..-+..|...+ +- ++|.|=--. =|+.+-|.++|
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg--vGiNLtgADTV 1350 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG--VGINLTGADTV 1350 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc--cccccccCceE
Confidence 456689999999999999999999999999999999999999999999997765 33 344444333 67888899999
Q ss_pred EEccCCCCC------CchhhhccccCCCCCceEEEEechhcHHHHHHHhCchHHHHhh
Q 004428 693 IIYSLPERK------EFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSAHAKKMV 744 (754)
Q Consensus 693 IfY~lP~~p------efY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~ra~~m~ 744 (754)
||||===|| ....||||+|- +--..-|+|.+-.. |.|+....-++||
T Consensus 1351 vFYDsDwNPtMDaQAQDrChRIGqtR---DVHIYRLISe~TIE--eniLkkanqKr~L 1403 (1958)
T KOG0391|consen 1351 VFYDSDWNPTMDAQAQDRCHRIGQTR---DVHIYRLISERTIE--ENILKKANQKRML 1403 (1958)
T ss_pred EEecCCCCchhhhHHHHHHHhhcCcc---ceEEEEeeccchHH--HHHHhhhhHHHHH
Confidence 999976665 34667777664 34455566655332 4444444344444
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.34 Score=58.53 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=90.7
Q ss_pred Hh-HHhhhcCC-CcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CccEEEEcc-cccccCcc
Q 004428 609 VF-PKIKDSIQ-GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG-KRKMILYTE-RSHFYHRY 684 (754)
Q Consensus 609 iL-p~l~~~~~-~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G-~~~ILL~TE-rahffRr~ 684 (754)
+| +.+..... .++|||.+-...-.-|..+|+..++.++.++|.++...|......|..+ ...|++.+= -.. -|+
T Consensus 700 ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg--~gl 777 (866)
T COG0553 700 LLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGG--LGL 777 (866)
T ss_pred HHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccc--cce
Confidence 45 45443333 2899999999999999999999999999999999999999999999997 455555554 555 899
Q ss_pred ccCCCCeEEEccCCCCCCchhhhccc---cCCCCCceEEEEechhc
Q 004428 685 KIRGIQNLIIYSLPERKEFYPEIVNM---LEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 685 dIkgV~~VIfY~lP~~pefY~erigr---t~ra~~g~~~~L~sk~D 727 (754)
..-+..+||.||+.-||..+...+.| +|.-..-.+.-++++.-
T Consensus 778 nLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 778 NLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred eecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999886554444 33333455666776554
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=93.28 E-value=4.2 Score=49.93 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=112.2
Q ss_pred cCCceeEEEEecchhhhhcCch----HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHH
Q 004428 479 YLSSIEVLIIDHADIILMQNWS----WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFF 554 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~----hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~ 554 (754)
.|.+.++|||||+...++|... |+..++..|. ++|. .-...|+.-|+++...-.++
T Consensus 139 ~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~----------------~lI~----~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 139 LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLK----------------ELIR----NAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHH----------------HHHH----hCCeEEEecCCCCHHHHHHH
Confidence 5777899999999998877542 2222332221 1221 12467888999999988888
Q ss_pred HHhhcCCCceEEE-eecccC--------cc-cccccceeEEEEEecc--------------Ccccc-hhHHHHHHHHHHH
Q 004428 555 NHHCANYQGKVKL-ACEYKG--------VL-PKVLLNVRQIYERFNA--------------DSIAK-ADDARLEYFTKKV 609 (754)
Q Consensus 555 ~~~~~N~~G~Vkv-~~~~~g--------~i-~~v~~~I~Q~f~r~~~--------------~s~~~-~~d~Rf~yF~~~i 609 (754)
....-+ ..|.+ .+.|.+ ++ ..+....-.-..+-+. ..... ....... |...+
T Consensus 199 ~~~Rp~--~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-F~~~L 275 (824)
T PF02399_consen 199 ASCRPD--ENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT-FFSEL 275 (824)
T ss_pred HHhCCC--CcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh-HHHHH
Confidence 764322 23433 234332 00 0000000000000000 00000 0011223 44457
Q ss_pred hHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 610 FPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 610 Lp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
+..|. ....+-||++|..-..-+.++.+..+.++..+.+-.+..+++. =++.+|++||=+.- =|+.+...
T Consensus 276 ~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~------W~~~~VviYT~~it--vG~Sf~~~ 345 (824)
T PF02399_consen 276 LARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVES------WKKYDVVIYTPVIT--VGLSFEEK 345 (824)
T ss_pred HHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccccc------ccceeEEEEeceEE--EEeccchh
Confidence 66665 3467889998887777777877888888888887666665542 46799999999988 88887654
Q ss_pred --CeEEEc--cCCCCCCc--hhhhcccc
Q 004428 690 --QNLIIY--SLPERKEF--YPEIVNML 711 (754)
Q Consensus 690 --~~VIfY--~lP~~pef--Y~erigrt 711 (754)
+.|.-| .....|+- -..++||+
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 445555 22233442 22566665
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.3 Score=60.09 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=53.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCccccC
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERSHFYHRYKIR 687 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TErahffRr~dIk 687 (754)
...++||-+.|-..-..|.+.|++.|++.-.++....+.++...+=. ..|+ -.|-|||-.|. ||-||+
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa-~AG~~GaVTIATNMAG--RGTDIk 506 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVA-QAGRKGAVTIATNMAG--RGTDII 506 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHH-hcCCCCcEEEeccCCC--CCcCEe
Confidence 46789999999999999999999999999888885333233322211 2565 48999999999 999987
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.88 Score=55.08 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccc
Q 004428 600 ARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTERS 678 (754)
Q Consensus 600 ~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TEra 678 (754)
.++.++. .+||.++..+ .+||||-.=..--+-|--+|+..++.|.-+.|.|.-..|.--+..|...+ +.|.|-+=+|
T Consensus 761 gK~r~L~-~LLp~~k~~G-~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 761 GKCRKLK-ELLPKIKKKG-DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhHhHHH-HHHHHHhhcC-CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 4666544 6999997655 89999988777778888899999999999999999999999999998875 5555555555
Q ss_pred cccCccccCCCCeEEEccCCCCCCc------hhhhccccCCCCCceEEEEechhc
Q 004428 679 HFYHRYKIRGIQNLIIYSLPERKEF------YPEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 679 hffRr~dIkgV~~VIfY~lP~~pef------Y~erigrt~ra~~g~~~~L~sk~D 727 (754)
.= -|+.+-.+.+||.||.--||.. =.||||-+- ..+++-|+|+.-
T Consensus 839 GG-~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtk---pVtV~rLItk~T 889 (941)
T KOG0389|consen 839 GG-FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTK---PVTVYRLITKST 889 (941)
T ss_pred Cc-ceecccccceEEEeecCCCCcccchhHHHHHhhCCcc---eeEEEEEEecCc
Confidence 42 5889999999999999888854 445555443 467888998764
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.7 Score=46.95 Aligned_cols=69 Identities=10% Similarity=-0.089 Sum_probs=52.0
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|.. |-+.|--..=.+..|+ ++.=.|| .|||.+-+|++.=+.+..
T Consensus 74 ~g~~--p~~vQll~~l~L~~G~--laEm~TG---------EGKTli~~l~a~~~AL~G---------------------- 118 (266)
T PF07517_consen 74 LGLR--PYDVQLLGALALHKGR--LAEMKTG---------EGKTLIAALPAALNALQG---------------------- 118 (266)
T ss_dssp TS------HHHHHHHHHHHTTS--EEEESTT---------SHHHHHHHHHHHHHHTTS----------------------
T ss_pred cCCc--ccHHHHhhhhhcccce--eEEecCC---------CCcHHHHHHHHHHHHHhc----------------------
Confidence 4543 6789988887777777 6777888 899999999998877632
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
-.|=|++..--||.+=.+.+..+.
T Consensus 119 -------------~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 119 -------------KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp -------------S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred -------------CCcEEEeccHHHhhccHHHHHHHH
Confidence 258899999999999888887763
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.6 Score=50.74 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=104.9
Q ss_pred HHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc
Q 004428 607 KKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI 686 (754)
Q Consensus 607 ~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI 686 (754)
..+||+|+. ...++|+|..-..-..-+-.||...+..+.-+.|.++-.+|.-....|.+..+-|.|.+-||. -=|+.+
T Consensus 1034 DeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG-GLGINL 1111 (1185)
T KOG0388|consen 1034 DELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG-GLGINL 1111 (1185)
T ss_pred HHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC-cccccc
Confidence 467888764 457899999998889999999999999999999999999999999999998888777777775 357777
Q ss_pred CCCCeEEEccCCCCCCchhhhc---cccCCCCCceEEEEechhc--HHHHHHHhCchHHHHhhh
Q 004428 687 RGIQNLIIYSLPERKEFYPEIV---NMLEGSHNMTCTVLFSRFD--MLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 687 kgV~~VIfY~lP~~pefY~eri---grt~ra~~g~~~~L~sk~D--~~~LErIVGt~ra~~m~~ 745 (754)
-...+||||+--=||-.=..-+ -|+|-..+.++.-|+++.- -..|+|.--..-+.+|+-
T Consensus 1112 TAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm 1175 (1185)
T KOG0388|consen 1112 TAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVM 1175 (1185)
T ss_pred cccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHH
Confidence 7899999999877775543322 2333333567777887653 456677666666666653
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.1 Score=55.07 Aligned_cols=71 Identities=8% Similarity=-0.154 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|.. |-++|--.-=+++.|+ ++.=+|| +|||.+-+|+++-+.+..
T Consensus 77 ~g~~--~~dvQlig~l~l~~G~--iaEm~TG---------EGKTLvA~l~a~l~al~G---------------------- 121 (796)
T PRK12906 77 LGLR--PFDVQIIGGIVLHEGN--IAEMKTG---------EGKTLTATLPVYLNALTG---------------------- 121 (796)
T ss_pred hCCC--CchhHHHHHHHHhcCC--cccccCC---------CCCcHHHHHHHHHHHHcC----------------------
Confidence 4543 6778877666777777 6777887 899999999999888632
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCc
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
-.|-|++||--||.|=.+.+..+...
T Consensus 122 -------------~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 122 -------------KGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred -------------CCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 25899999999999999999887543
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.46 E-value=35 Score=40.73 Aligned_cols=236 Identities=10% Similarity=0.053 Sum_probs=137.2
Q ss_pred cCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 479 YLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 479 fLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
||=....++.|+.+..+.-+-.|+..+|..|..+-+ -+|-+ .-=|.+--|+|+-.-++-. +-+
T Consensus 409 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~-----------~F~~~----~~~~~~~~~~~~K~~~~~~--~~~ 471 (1034)
T KOG4150|consen 409 PVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIK-----------GFEAS----INMGVYDGDTPYKDRTRLR--SEL 471 (1034)
T ss_pred HHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHH-----------HHHhh----cCcceEeCCCCcCCHHHHH--HHh
Confidence 566777888999988876667788888877633221 11111 1246666677776544321 123
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHH--HHHHhHHhhhcCCCcEEEEecchhcHHH---
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYF--TKKVFPKIKDSIQGGIMLFLSSYFEFVR--- 633 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF--~~~iLp~l~~~~~~~tLIFv~Sy~d~vr--- 633 (754)
.|.. .+.+... .|+- .-...|..-+.+-+-+..-.|-++. ..+||.++.. ..-++|-||++..-+.-
T Consensus 472 ~~~~-E~~Li~~-DGSP-----s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~ 543 (1034)
T KOG4150|consen 472 ANLS-ELELVTI-DGSP-----SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLC 543 (1034)
T ss_pred cCCc-ceEEEEe-cCCC-----CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHH
Confidence 3322 3444322 2321 1112233333222222222232221 1234444332 34689999999876543
Q ss_pred -HHHHHHhCCCc----eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhc
Q 004428 634 -LRNFLKSQNAS----FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIV 708 (754)
Q Consensus 634 -lrn~Lk~~~~~----f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~eri 708 (754)
+||.|.+.+-. ..+.-|.-+-++|.+.-+..++|+..=+|+|.-.. =|+||-+.+.||..+.|-+.--+-.-.
T Consensus 544 ~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE--LGIDIG~LDAVl~~GFP~S~aNl~QQ~ 621 (1034)
T KOG4150|consen 544 LTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE--LGIDIGHLDAVLHLGFPGSIANLWQQA 621 (1034)
T ss_pred HHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh--hccccccceeEEEccCchhHHHHHHHh
Confidence 46666554321 22233444566777777778899999999999999 999999999999999998888777888
Q ss_pred cccCCCC-CceEEE--EechhcHHHH---HHHhCchHHH
Q 004428 709 NMLEGSH-NMTCTV--LFSRFDMLRL---ERIVGSAHAK 741 (754)
Q Consensus 709 grt~ra~-~g~~~~--L~sk~D~~~L---ErIVGt~ra~ 741 (754)
||.||-. ...++. .-++-|..-| +.+.|...+.
T Consensus 622 GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 622 GRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred ccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 8888643 222222 2235555544 5566655544
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=24 Score=42.94 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.6
Q ss_pred eEEEEccchhHHHHHHHHHHHhCC
Q 004428 346 KVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 346 kVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
+||||+|.-.|+.|+++.|....+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~ 213 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG 213 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC
Confidence 599999999999999999987654
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=86.35 E-value=30 Score=44.05 Aligned_cols=233 Identities=11% Similarity=0.095 Sum_probs=123.9
Q ss_pred CCCEEEeCchhHHHHHhhhhcccccCcccCC----ceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhh
Q 004428 451 TSDMIVASPINLHQKMTKAEENKEQDVDYLS----SIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQ 526 (754)
Q Consensus 451 ~sDIIVASPlgLr~lI~~~e~~k~rd~dfLS----SIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~ 526 (754)
.+.|+|||+==|+...... + ...-.+. .=.+|||||+|..-..=...|..++.-+.
T Consensus 562 ~apv~V~TIDQlL~a~~~~---r-~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~---------------- 621 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESH---R-GGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAG---------------- 621 (1110)
T ss_pred cCCeEEecHHHHHHHhhhc---c-cchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHH----------------
Confidence 4899999999888876421 1 0111111 24589999999885211234444444321
Q ss_pred hhcccCCCccccEEEEcCCCCHHHH-HHHHHhh----------cCCCceEEEeecc----cC---cc-------------
Q 004428 527 WYLDGYSRFYRQTVLLSYHPNPEIN-AFFNHHC----------ANYQGKVKLACEY----KG---VL------------- 575 (754)
Q Consensus 527 w~L~~~ak~~RQTllFSAt~~pein-sL~~~~~----------~N~~G~Vkv~~~~----~g---~i------------- 575 (754)
.+-.-.||.|||+||.+. .|+.-|+ ..+...+.|.+.. .. .+
T Consensus 622 -------~lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~F 694 (1110)
T TIGR02562 622 -------LLGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDF 694 (1110)
T ss_pred -------HcCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHH
Confidence 122568999999999955 4554442 1211223333321 00 00
Q ss_pred -----cccc-cceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh----c----C-C----CcEEEEecchhcHHHHHH
Q 004428 576 -----PKVL-LNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD----S----I-Q----GGIMLFLSSYFEFVRLRN 636 (754)
Q Consensus 576 -----~~v~-~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~----~----~-~----~~tLIFv~Sy~d~vrlrn 636 (754)
..+. ..+...-..++++............|...|+..+.. . . . +=-||=+.+-...+.+..
T Consensus 695 v~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~ 774 (1110)
T TIGR02562 695 LRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQ 774 (1110)
T ss_pred HHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHH
Confidence 0000 012222333444333222333444455556655432 0 1 1 124788889999999999
Q ss_pred HHHhC----C--CceEeecCCCCHHHHHH---H-------------------HHHHhc----CCccEEEEcccccccCcc
Q 004428 637 FLKSQ----N--ASFCLLGDYTEPSDISR---A-------------------RVWFFE----GKRKMILYTERSHFYHRY 684 (754)
Q Consensus 637 ~Lk~~----~--~~f~~Ihey~sq~~r~r---a-------------------r~~F~~----G~~~ILL~TErahffRr~ 684 (754)
+|... + +.++..|.--....|+. - +....+ +..-|+|+|-+.- -|.
T Consensus 775 ~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E--~g~ 852 (1110)
T TIGR02562 775 FLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEE--VGR 852 (1110)
T ss_pred HHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEE--EEe
Confidence 99754 2 34566666543333332 1 111222 4678999999998 777
Q ss_pred ccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 685 KIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 685 dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
||. -..+ |-=|....--+.+.||..|.+
T Consensus 853 D~d-fd~~--~~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 853 DHD-YDWA--IADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred ccc-CCee--eeccCcHHHHHHHhhcccccc
Confidence 773 3333 233555556677778877654
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=3.2 Score=50.27 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=60.4
Q ss_pred CCcEEEEecchhcHH----HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYFEFV----RLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~v----rlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++||.+|+..=+. .++.+|...+++++.++|.++.+++...+....+|+..|+|+|= +-+.....++++..||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~-~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH-ALIQDDVEFHNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH-HHhcccchhcccceEE
Confidence 458999999986555 45555566689999999999999999999999999999999994 2233555677787777
Q ss_pred E
Q 004428 694 I 694 (754)
Q Consensus 694 f 694 (754)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 3
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.98 E-value=4.2 Score=49.80 Aligned_cols=124 Identities=12% Similarity=0.040 Sum_probs=89.6
Q ss_pred cEEEEecchhcHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHHhcCCc--cEEEEcccccccCccccCCCCeEEEcc
Q 004428 620 GIMLFLSSYFEFVRLRNFLK-SQNASFCLLGDYTEPSDISRARVWFFEGKR--KMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk-~~~~~f~~Ihey~sq~~r~rar~~F~~G~~--~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
--.++|..|....+|-..|. -.|..++.++|.|++++|.+....|..-.- .|+|++==|- --|+-+=|.++||.||
T Consensus 596 ~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAg-g~GinLiGAsRlil~D 674 (776)
T KOG0390|consen 596 VKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAG-GEGLNLIGASRLILFD 674 (776)
T ss_pred eEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccc-cCceeecccceEEEeC
Confidence 34567788888888777664 469999999999999999999999977543 5666655553 4899999999999999
Q ss_pred CCCCCCchhhhccccCCCCC---ceEEEEechh--cHHHHHHHhCchHHHHhh
Q 004428 697 LPERKEFYPEIVNMLEGSHN---MTCTVLFSRF--DMLRLERIVGSAHAKKMV 744 (754)
Q Consensus 697 lP~~pefY~erigrt~ra~~---g~~~~L~sk~--D~~~LErIVGt~ra~~m~ 744 (754)
++=||--=..-+.|+=|.|. ..+.-|.+.. |-..+.|-.-.++...|+
T Consensus 675 ~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v 727 (776)
T KOG0390|consen 675 PDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMV 727 (776)
T ss_pred CCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheE
Confidence 99999988888888888773 2233344432 333444444444444443
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=83.75 E-value=3.4 Score=40.27 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=42.9
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCccccCC--CCeEEEccCCC
Q 004428 645 FCLLGDYTEPSDISRARVWFFEGKR-KMILYTERSHFYHRYKIRG--IQNLIIYSLPE 699 (754)
Q Consensus 645 f~~Ihey~sq~~r~rar~~F~~G~~-~ILL~TErahffRr~dIkg--V~~VIfY~lP~ 699 (754)
...+.+-.+..+....+..|+.... .||++|.+ |+-|+|++| .+.||..+||-
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~--~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACENAILLATAR--FSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccc--eecceecCCCCeeEEEEEecCC
Confidence 4455566666678889999987653 89999999 669999999 57999999994
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.9 Score=42.95 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=48.1
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
|+-|.+++-. ....+++.|.-| +|||.+-+--++..|...
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AG---------SGKT~~l~~ri~~ll~~~----------------------------- 41 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAG---------SGKTTTLLERIAYLLYEG----------------------------- 41 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TT---------SSHHHHHHHHHHHHHHTS-----------------------------
T ss_pred CHHHHHHHhC--CCCCEEEEeCCC---------CCchHHHHHHHHHhhccc-----------------------------
Confidence 6789998887 566677766544 889987655555444322
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
+....++|+|++||.+|..+.+.|..+.+
T Consensus 42 --~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 42 --GVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp --SSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred --cCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 12345699999999999999999998754
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=83.67 E-value=6.9 Score=49.77 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC---CccEEEEcccccccC
Q 004428 606 TKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG---KRKMILYTERSHFYH 682 (754)
Q Consensus 606 ~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G---~~~ILL~TErahffR 682 (754)
+.+|||.|+. ...+||||-.--.--+-|..||...+++|--|.|...-.-|..|+.+|..- ..=|||+|=-=. =
T Consensus 688 LDKLL~rLk~-~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG--L 764 (1373)
T KOG0384|consen 688 LDKLLPRLKE-GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG--L 764 (1373)
T ss_pred HHHHHHHHhc-CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc--c
Confidence 4567777764 447899999988888999999999999999999999999999999999653 467888884434 6
Q ss_pred ccccCCCCeEEEccCCCCCCc------hhhhccccCCCCCceEEEEech
Q 004428 683 RYKIRGIQNLIIYSLPERKEF------YPEIVNMLEGSHNMTCTVLFSR 725 (754)
Q Consensus 683 r~dIkgV~~VIfY~lP~~pef------Y~erigrt~ra~~g~~~~L~sk 725 (754)
|+.+--+.+||.||===||+- =.||||-. ....+.=|+|+
T Consensus 765 GINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk---k~VnVYRLVTk 810 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK---KHVNVYRLVTK 810 (1373)
T ss_pred cccccccceEEEeCCCCCcchHHHHHHHHHhhccc---ceEEEEEEecC
Confidence 778888999999998777764 34555532 22334445553
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.32 E-value=3.1 Score=49.70 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred CCHHHHHHh----hhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccc
Q 004428 258 HSSKQRSFF----SLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILI 333 (754)
Q Consensus 258 pTpiQ~~~i----p~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~ 333 (754)
|=|.|.+++ ..+.+++=+++.|+|| +|||.+|++|+|-+....
T Consensus 16 ~r~~Q~~~~~~v~~a~~~~~~~~iEapTG---------tGKTl~yL~~al~~~~~~------------------------ 62 (654)
T COG1199 16 PRPEQREMAEAVAEALKGGEGLLIEAPTG---------TGKTLAYLLPALAYAREE------------------------ 62 (654)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCCC---------ccHHHHHHHHHHHHHHHc------------------------
Confidence 456776655 3445555699999998 999999999999988643
Q ss_pred ccccccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 334 GDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 334 ~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..+|+|.++|+.+=.|+++....+
T Consensus 63 ----------~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 63 ----------GKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred ----------CCcEEEECCCHHHHHHHHHhhcch
Confidence 257899999999888888887765
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.39 E-value=12 Score=45.81 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=86.0
Q ss_pred CCCcEEEEecchhcHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHHhcCC-ccE-EEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLK-SQNASFCLLGDYTEPSDISRARVWFFEGK-RKM-ILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk-~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~I-LL~TErahffRr~dIkgV~~VI 693 (754)
...++|+|-.+..--.-|-.+|. ..+++|+-+.|-++-+.|..-...|..+. +.| ||+|=+=. =|+.+-|+..||
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG--LGlNLTgAnRVI 622 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG--LGLNLTGANRVI 622 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc--cccccccCceEE
Confidence 34599999999999999999999 68999999999999999999999999886 444 55555555 789999999999
Q ss_pred EccCCCCCCc---hhhhccccCCCCCceEEEEechh
Q 004428 694 IYSLPERKEF---YPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 694 fY~lP~~pef---Y~erigrt~ra~~g~~~~L~sk~ 726 (754)
.|||-=||.. =.+|+=|+|--....+.=|.|.-
T Consensus 623 IfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 623 IFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred EECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 9999777765 45566566643345555566643
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=81.75 E-value=4.4 Score=48.58 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCcEEEEecchhcHHH----HHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYFEFVR----LRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vr----lrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..+++|-+|+..=+.. ++++|...+++++.++|.++.+++...+....+|+..|+|.|-.. ++....++++..||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~l-l~~~~~~~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHAL-IQEKVEFKRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHH-HhccccccccceEE
Confidence 4589999999866554 455555568999999999999999999999999999999999643 45666777888777
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=81.25 E-value=9.4 Score=46.36 Aligned_cols=76 Identities=8% Similarity=0.075 Sum_probs=63.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKS-QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~-~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
..++||.+|+..-...+.+.|++ -+..++.+|+.++.+++.++......|+.+|+|.|=-+.| ..++++..||.=+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---ccccCCCEEEEEC
Confidence 46899999999998888888876 3788999999999999999999999999999999954443 3577888888654
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=81.04 E-value=5.4 Score=39.71 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=48.2
Q ss_pred CHHHHHHhhhhhCCcc-EEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRD-ILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~D-vl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+-|..++-.+++..+ .++.++-| ||||.+ +.+++.++++.... .
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPG---------TGKT~~-l~~~i~~~~~~~~~--------------~---------- 48 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPG---------TGKTTT-LASIIAQLLQRFKS--------------R---------- 48 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STT---------SSHHHH-HHHHHHHH-------------------------------
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCC---------CChHHH-HHHHHHHhccchhh--------------h----------
Confidence 4689999999999999 55555444 899943 44666666432100 0
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHH
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIR 366 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~ 366 (754)
......++||++||...+-.+++.|.+
T Consensus 49 --~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 49 --SADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred --hhhccccceeecCCchhHHHHHHHHHh
Confidence 012356899999999999999999998
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=81.01 E-value=4.2 Score=50.66 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=87.3
Q ss_pred HHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC---ccEEEEccc
Q 004428 601 RLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK---RKMILYTER 677 (754)
Q Consensus 601 Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~---~~ILL~TEr 677 (754)
+|. ++..|||+|++. ..++|+|+.-..--.-+-.||.-.++.+.-+.|-|...+|...+..|..-. ..||+.|.+
T Consensus 711 KfE-LLDRiLPKLkat-gHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 711 KFE-LLDRILPKLKAT-GHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred HHH-HHHhhhHHHHhc-CcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 443 567899999764 479999998877777778888889999999999999999999999997755 468899999
Q ss_pred ccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 678 SHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 678 ahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
.. .|+.+.-..+||.||-=-+|+-..-
T Consensus 789 gg--lglNlQtadtviifdsdwnp~~d~q 815 (1157)
T KOG0386|consen 789 GG--LGLNLQTADTVIIFDSDWNPHQDLQ 815 (1157)
T ss_pred cc--cccchhhcceEEEecCCCCchhHHH
Confidence 88 9999999999999999999987643
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.84 E-value=2.2 Score=37.57 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=52.7
Q ss_pred cEEEEe-cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 620 GIMLFL-SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 620 ~tLIFv-~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
++.||. +..-.+.+++++|.+.|++|..+.-......+...+. .-...+++|+.-|... .||+...++.++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~--~Gf~~~~l~~~~ 73 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSW--SGFRPDMINRLH 73 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEE--ecCCHHHHHHHH
Confidence 456777 6778899999999999999988887776655555444 2445789999988754 788776665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 9e-17
Identities = 90/593 (15%), Positives = 165/593 (27%), Gaps = 208/593 (35%)
Query: 189 LSKEEVDD------------------LSKKKLKYEWEVPAVDMSNCKWVGTG---ECFLK 227
LSKEE+D LSK++ + V V N K++ + E +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--R 103
Query: 228 D------------DNLYSD----------------------YGLKPKLY----------K 243
D LY+D L+P K
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 244 HWLDIYNKSGGNDFHSSKQRSF------FSLCNSYRDI------LHSNKKPFYLKGQEED 291
W+ + + + F CNS + L P + +
Sbjct: 164 TWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 292 SNIMETY--LMHSLNHIFRTRD--------------------------LVTKNDTKVAKN 323
SNI + L + +++ L+T +V +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-D 279
Query: 324 KVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFC 383
+SA I T +V LL L+ R L + N +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDC--RPQDLPREVLTTNPRRLSIIA 334
Query: 384 DEFGTKKEEEDKDDDDASQNIR---GTRKSNSQKS-----KPSDYQILFGGNNDDNFSI- 434
E +D N + + + +S +P++Y+ +F D S+
Sbjct: 335 --------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-----DRLSVF 381
Query: 435 --GIKFTRKSIKLY---NDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIID 489
+ L ++V LH+ ++ KE SI + ++
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSLVEKQPKE----STISIPSIYLE 434
Query: 490 -----------HADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQ 538
H I+ + N IP D++ YLD Y +
Sbjct: 435 LKVKLENEYALHRSIV------------DHYN-IPKTFDSDDLIPP---YLDQYFYSH-- 476
Query: 539 TVLLSYH----PNPEINAFFNHHCANY---QGKVK---LACEYKGVLPKVLLNVRQIYER 588
+ +H +PE F ++ + K++ A G + L ++ Y+
Sbjct: 477 ---IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKP 532
Query: 589 FNADSIAKADDAR------LEYFTKKVFPKI-----KDSIQGGIMLFLSSYFE 630
+ I D + F K+ + D ++ +M + FE
Sbjct: 533 Y----ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 50/345 (14%), Positives = 99/345 (28%), Gaps = 104/345 (30%)
Query: 431 NFSIG-IKFTRKSI------KLYNDF---YTSDMIVASPINLHQKMTKAE-------ENK 473
+F G ++ K I ++F DM ++K E ++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-------PKSILSKEEIDHIIMSKDA 60
Query: 474 EQDVDYLSSIEVLIIDHADII-------LMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQ 526
L L+ +++ L N+ +L+ ++ R PS + +
Sbjct: 61 VSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------MMTR 110
Query: 527 WYLDGYSRFYR-------------------QTVLLSYHPNPEINAFFNHH----CANYQG 563
Y++ R Y + LL P + G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----DGVLGS----G 162
Query: 564 KVKLACEYKGVLPKVLLNVRQIYERFNAD----SIAKADDAR-----LEYFTKKVFPKIK 614
K +A + V L+ + + + + ++ + L+ ++ P
Sbjct: 163 KTWVALD-------VCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 615 DSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLG-DYTEPSDISRARVW-FFEGKRKMI 672
+ L + LR LKS+ CLL ++ A+ W F K I
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNAFNLSCK-I 268
Query: 673 LYTERSH-------FYHRYKIRGIQNLIIYSLPERKEFYPEIVNM 710
L T R I + + + E K + ++
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 75/574 (13%), Positives = 156/574 (27%), Gaps = 186/574 (32%)
Query: 256 DFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTK 315
DF + + + Y+DIL + F D ++ + +++K
Sbjct: 8 DFETGEHQ------YQYKDILSVFEDAFV---DNFDCKDVQDMP----------KSILSK 48
Query: 316 NDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIR--LTPD--- 370
+ A G L + L S +V++ + L +
Sbjct: 49 EEIDHIIMSKDAVSGTL---------------RLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 371 -AHKVNVEHIDR--FCDEFGTKKEEEDKDDDDASQ-NIRGTR-------KSNSQKSKPSD 419
+ E + +++ D+ ++ N+ +R + + +P+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAK 151
Query: 420 YQILFG--GNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDV 477
++ G G G K+ + D V + KM + +
Sbjct: 152 NVLIDGVLG-------SG-----KTW-VALD-------VCLSYKVQCKM-------DFKI 184
Query: 478 DYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVM-RIRQWYLDGYSRFY 536
+L+ + ++Q + I+ P+ +D I+ +
Sbjct: 185 FWLNLKNC-NSPETVLEMLQKLLYQID--------PNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 537 RQTVLLSYHPNPE-------------INAFFNHHC----------------ANYQGKVKL 567
R LL P NA FN C A + L
Sbjct: 236 R---LLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 568 --------ACEYKGVLPKVL----------------LNVRQIYERFNADSIAKADDARLE 603
E K +L K L + I E + A +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI------RDGLATWD 345
Query: 604 YFTKKVFPKIKDSIQGGIMLFLSSYFE--FVRLRNFLKSQN---ASFCLL---GDYTEPS 655
+ K+ I+ + + + + F RL F S + L+ ++
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 656 DISRARVWFFEGKRKMIL--YTERSHFYH------RYKIRGIQNL---II--YSLPERKE 702
+ V K ++ E + + K+ L I+ Y++P+ +
Sbjct: 406 VV----VNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 703 FYPEIVNMLEG------SHNMTCTVLFSRFDMLR 730
I L+ H++ R + R
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.98 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.98 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.97 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.97 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.97 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.97 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.96 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.96 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.96 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.96 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.96 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.95 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.95 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.95 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.95 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.95 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.95 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.94 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.94 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.94 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.94 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.94 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.94 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.94 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.93 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.93 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.93 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.93 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.93 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.93 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.93 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.93 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.92 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.88 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.88 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.87 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.86 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.85 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.84 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.84 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.83 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.82 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.82 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.8 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.8 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.79 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.79 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.76 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.61 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.73 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.71 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.69 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.63 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.59 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.53 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.49 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.43 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.19 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.09 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.79 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 82.47 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 80.43 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-52 Score=457.91 Aligned_cols=360 Identities=17% Similarity=0.224 Sum_probs=289.8
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+.++|.++.+|.+++|++.|++++.++ |+.. |||+|++++|.+++++|++++++|| +|||.+|++|
T Consensus 48 ~~~~p~~~~~f~~~~l~~~l~~~l~~~----g~~~-pt~iQ~~ai~~i~~g~d~i~~a~TG---------sGKT~a~~lp 113 (434)
T 2db3_A 48 GSDVPQPIQHFTSADLRDIIIDNVNKS----GYKI-PTPIQKCSIPVISSGRDLMACAQTG---------SGKTAAFLLP 113 (434)
T ss_dssp SSSCCCCCCCGGGSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHH
T ss_pred CCCCCCCcCChhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCEEEECCCC---------CCchHHHHHH
Confidence 456778889999999999999999874 8876 9999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|+|+++.... .....|++|||+|||+||.|+.+.+.+++.... .+
T Consensus 114 il~~l~~~~~~---------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-------~~ 159 (434)
T 2db3_A 114 ILSKLLEDPHE---------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESY-------LK 159 (434)
T ss_dssp HHHHHHHSCCC---------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS-------CC
T ss_pred HHHHHHhcccc---------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCC-------cE
Confidence 99999865320 112368999999999999999999999875432 12
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+|+. .... +.+... .+++||||||++
T Consensus 160 ~~~~~gg~-----------------------------------------------~~~~-~~~~l~--~~~~Ivv~Tp~~ 189 (434)
T 2db3_A 160 IGIVYGGT-----------------------------------------------SFRH-QNECIT--RGCHVVIATPGR 189 (434)
T ss_dssp CCEECTTS-----------------------------------------------CHHH-HHHHHT--TCCSEEEECHHH
T ss_pred EEEEECCC-----------------------------------------------CHHH-HHHHhh--cCCCEEEEChHH
Confidence 22334432 1111 111111 479999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....|+.+.+|||||||+|+ |++...+..|+.++...| .||+|
T Consensus 190 l~~~l~~-------~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~----------------------~~q~l 240 (434)
T 2db3_A 190 LLDFVDR-------TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP----------------------EHQTL 240 (434)
T ss_dssp HHHHHHT-------TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCS----------------------SCEEE
T ss_pred HHHHHHh-------CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCC----------------------CceEE
Confidence 9999873 34568999999999999999 555567777777654322 38999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCc
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGG 620 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~ 620 (754)
+||||+++++..++..++.++. .+.+. ........+.|.+..+... .+.. .++..+.. ...+
T Consensus 241 ~~SAT~~~~~~~~~~~~l~~~~-~i~~~-----~~~~~~~~i~~~~~~~~~~-------~k~~----~l~~~l~~-~~~~ 302 (434)
T 2db3_A 241 MFSATFPEEIQRMAGEFLKNYV-FVAIG-----IVGGACSDVKQTIYEVNKY-------AKRS----KLIEILSE-QADG 302 (434)
T ss_dssp EEESCCCHHHHHHHHTTCSSCE-EEEES-----STTCCCTTEEEEEEECCGG-------GHHH----HHHHHHHH-CCTT
T ss_pred EEeccCCHHHHHHHHHhccCCE-EEEec-----cccccccccceEEEEeCcH-------HHHH----HHHHHHHh-CCCC
Confidence 9999999999999999988752 33332 1223456789988876532 2332 22222332 3345
Q ss_pred EEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC
Q 004428 621 IMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER 700 (754)
Q Consensus 621 tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~ 700 (754)
+||||++...+..|..+|++.++.+..+|+.++|.+|.+++..|++|+.+|||+|++++ ||+||++|++||||++|.+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~--rGlDi~~v~~VI~~d~p~~ 380 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVAS--RGLDIKNIKHVINYDMPSK 380 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGT--SSCCCTTCCEEEESSCCSS
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhh--CCCCcccCCEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhhccccCCCC-CceEEEEechh-cH
Q 004428 701 KEFYPEIVNMLEGSH-NMTCTVLFSRF-DM 728 (754)
Q Consensus 701 pefY~erigrt~ra~-~g~~~~L~sk~-D~ 728 (754)
++.|.||+||+||.+ .|.|++||++. |.
T Consensus 381 ~~~y~qriGR~gR~g~~G~a~~~~~~~~~~ 410 (434)
T 2db3_A 381 IDDYVHRIGRTGRVGNNGRATSFFDPEKDR 410 (434)
T ss_dssp HHHHHHHHTTSSCTTCCEEEEEEECTTTCG
T ss_pred HHHHHHHhcccccCCCCCEEEEEEeccccH
Confidence 999999999999997 79999999944 43
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=400.08 Aligned_cols=383 Identities=16% Similarity=0.183 Sum_probs=288.2
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+..+|+++.+|++++|++.|.++|..+ |+.. |||+|++++|.+++++|++++++|| +|||.+|++|
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~i~~~~~~lv~a~TG---------sGKT~~~~~~ 72 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIELT----RYTR-PTPVQKHAIPIIKEKRDLMACAQTG---------SGKTAAFLLP 72 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHH
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHccCCCEEEEcCCC---------CHHHHHHHHH
Confidence 456788889999999999999999886 7876 8999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+|++++..... ..+....+.. .+. ..-..|++|||+|||+||.|+.+.+.+++.... .+
T Consensus 73 ~l~~~~~~~~~-----~~~~~~~~~~--------~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~ 131 (417)
T 2i4i_A 73 ILSQIYSDGPG-----EALRAMKENG--------RYG-RRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-------VR 131 (417)
T ss_dssp HHHHHHHHCCC-----HHHHHHHHCB--------TTB-SCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-------CC
T ss_pred HHHHHHhcccc-----chhhcccccc--------ccc-cccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-------ce
Confidence 99999865321 0010000000 000 001248999999999999999999999864321 11
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+|+. .... .++-+. .+++||||||++
T Consensus 132 ~~~~~g~~-----------------------------------------------~~~~-~~~~~~--~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 132 PCVVYGGA-----------------------------------------------DIGQ-QIRDLE--RGCHLLVATPGR 161 (417)
T ss_dssp EEEECSSS-----------------------------------------------CHHH-HHHHHT--TCCSEEEECHHH
T ss_pred EEEEECCC-----------------------------------------------CHHH-HHHHhh--CCCCEEEEChHH
Confidence 12222322 1111 111111 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|..++.. ....++.+.++||||||.|+..+ +..+..++..+...+. ..+|++
T Consensus 162 l~~~l~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~~~i 214 (417)
T 2i4i_A 162 LVDMMER-------GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPK--------------------GVRHTM 214 (417)
T ss_dssp HHHHHHT-------TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCB--------------------TTBEEE
T ss_pred HHHHHHc-------CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCc--------------------CCcEEE
Confidence 9998873 23458999999999999999544 4566666554332221 248999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCC
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQG 619 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~ 619 (754)
+||||+++.+..++..++.++ ..+.+... ......+.|.+..++.. .+..+ ++..+... ...
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~i~~~~~~~~~~-------~~~~~----l~~~l~~~~~~~ 277 (417)
T 2i4i_A 215 MFSATFPKEIQMLARDFLDEY-IFLAVGRV-----GSTSENITQKVVWVEES-------DKRSF----LLDLLNATGKDS 277 (417)
T ss_dssp EEESCCCHHHHHHHHHHCSSC-EEEEEC---------CCSSEEEEEEECCGG-------GHHHH----HHHHHHTCCTTC
T ss_pred EEEEeCCHHHHHHHHHHcCCC-EEEEeCCC-----CCCccCceEEEEEeccH-------hHHHH----HHHHHHhcCCCC
Confidence 999999999999999888875 23333211 23456788888776532 23322 22222222 457
Q ss_pred cEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 620 GIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 620 ~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
++||||++...+..|..+|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||++|++||+|++|.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~--~Gidip~v~~Vi~~~~p~ 355 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA--RGLDISNVKHVINFDLPS 355 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHH--TTSCCCCEEEEEESSCCS
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh--cCCCcccCCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 700 RKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 700 ~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
++..|.||+||+||.+ .|.|++||++.|...+.+++
T Consensus 356 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 356 DIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392 (417)
T ss_dssp SHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHH
T ss_pred CHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHH
Confidence 9999999999999987 69999999999876655554
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-45 Score=413.27 Aligned_cols=371 Identities=14% Similarity=0.136 Sum_probs=284.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhh--CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCN--SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~--~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
|++.|++++.++ |+.. |||+|+++||.++ .++|++++++|| +|||.+|+||+++++.+.+.
T Consensus 28 l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~il~~~~~dvlv~apTG---------sGKTl~~~lpil~~l~~~~~--- 90 (579)
T 3sqw_A 28 LDKEIHKAITRM----EFPG-LTPVQQKTIKPILSSEDHDVIARAKTG---------TGKTFAFLIPIFQHLINTKF--- 90 (579)
T ss_dssp SCHHHHHHHHTT----TCSS-CCHHHHHHHHHHHCSSSEEEEEECCTT---------SCHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHccCCCeEEEEcCCC---------cHHHHHHHHHHHHHHHhccc---
Confidence 899999998774 8876 8999999999999 789999999998 89999999999999987632
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
.+-..|+||||+|||+||.|+.+.+.++....... ...+.
T Consensus 91 -------------------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~---~~~~~------------ 130 (579)
T 3sqw_A 91 -------------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGL---KKYAC------------ 130 (579)
T ss_dssp -------------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGG---TTSCE------------
T ss_pred -------------------------cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccc---cceEE------------
Confidence 11235899999999999999999999985321100 00111
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccc
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKE 474 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~ 474 (754)
..+++| ..+....-++.. .+++||||||++|.+++...
T Consensus 131 --------------------------~~~~gg---------~~~~~~~~~l~~--~~~~IlV~Tp~~l~~~l~~~----- 168 (579)
T 3sqw_A 131 --------------------------VSLVGG---------TDFRAAMNKMNK--LRPNIVIATPGRLIDVLEKY----- 168 (579)
T ss_dssp --------------------------EEECTT---------SCHHHHHHHHHH--HCCSEEEECHHHHHHHHHHH-----
T ss_pred --------------------------EEEECC---------ccHHHHHHHHhc--CCCCEEEECHHHHHHHHHhc-----
Confidence 222232 111211111211 36899999999999998731
Q ss_pred cCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 475 QDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 475 rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
...+++.+.+|||||||.|+ |+++.++..|+..+...+.. ....+|+|+||||+++.+..+
T Consensus 169 -~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SAT~~~~v~~~ 230 (579)
T 3sqw_A 169 -SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSATLDDKVQKL 230 (579)
T ss_dssp -HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEESSCCTHHHHH
T ss_pred -cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-----------------cccCceEEEEeccCChHHHHH
Confidence 23468999999999999998 66677888888887554331 112379999999999999999
Q ss_pred HHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHH
Q 004428 554 FNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 554 ~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~v 632 (754)
+..++.++ ..+.+..... ........+.|.+...+.. ..++...+..++..+.. ....++||||++...+.
T Consensus 231 ~~~~l~~~-~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~ 302 (579)
T 3sqw_A 231 ANNIMNKK-ECLFLDTVDK-NEPEAHERIDQSVVISEKF------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTS 302 (579)
T ss_dssp TTTTCCSS-EEEEEESSCS-SSCSSCTTEEEEEEEESST------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHH
T ss_pred HHHHcCCC-ceEEEeecCc-cccccccccceEEEEecch------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHH
Confidence 98888774 3444432211 1112345677777765432 11222223334444443 34679999999999999
Q ss_pred HHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhcc
Q 004428 633 RLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709 (754)
Q Consensus 633 rlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erig 709 (754)
.|...|++. ++.+..+|+.+++.+|.+++..|++|+.+|||||++++ ||+||++|++||+|++|.+++.|.||+|
T Consensus 303 ~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~--~GiDip~v~~VI~~~~p~s~~~y~Qr~G 380 (579)
T 3sqw_A 303 FLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA--RGMDFPNVHEVLQIGVPSELANYIHRIG 380 (579)
T ss_dssp HHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGT--SSCCCTTCCEEEEESCCSSTTHHHHHHT
T ss_pred HHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhh--cCCCcccCCEEEEcCCCCCHHHhhhhcc
Confidence 999999986 99999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCC-CceEEEEechhcHHHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||++ .|.|++++++.|...++.|
T Consensus 381 RagR~g~~g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 381 RTARSGKEGSSVLFICKDELPFVREL 406 (579)
T ss_dssp TSSCTTCCEEEEEEEEGGGHHHHHHH
T ss_pred ccccCCCCceEEEEEcccHHHHHHHH
Confidence 999998 7999999999998777655
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=406.07 Aligned_cols=371 Identities=14% Similarity=0.136 Sum_probs=282.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhh--CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCN--SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~--~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
|++.+++++.+. |+.. |||+|+++||.++ .++|++++++|| +|||.+|++|+++++.+.+.
T Consensus 79 l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~l~~~~~~~lv~apTG---------sGKTl~~~lpil~~l~~~~~--- 141 (563)
T 3i5x_A 79 LDKEIHKAITRM----EFPG-LTPVQQKTIKPILSSEDHDVIARAKTG---------TGKTFAFLIPIFQHLINTKF--- 141 (563)
T ss_dssp SCHHHHHHHHTT----CCSS-CCHHHHHHHHHHHSSSSEEEEEECCTT---------SCHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCCeEEEECCCC---------CCccHHHHHHHHHHHHhccc---
Confidence 889999998764 8876 8999999999998 789999999998 89999999999999987532
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
.+-..++||||+|||+||.|+++.+.++......+ ...+.
T Consensus 142 -------------------------~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~---~~~~~------------ 181 (563)
T 3i5x_A 142 -------------------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGL---KKYAC------------ 181 (563)
T ss_dssp -------------------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGG---TTSCE------------
T ss_pred -------------------------cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcccc---CceeE------------
Confidence 01135799999999999999999999974321100 00111
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccc
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKE 474 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~ 474 (754)
..+.+| .......-++.. .++|||||||++|.+++...
T Consensus 182 --------------------------~~~~g~---------~~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~l~~~----- 219 (563)
T 3i5x_A 182 --------------------------VSLVGG---------TDFRAAMNKMNK--LRPNIVIATPGRLIDVLEKY----- 219 (563)
T ss_dssp --------------------------EEECTT---------SCHHHHHHHHHH--HCCSEEEECHHHHHHHHHHH-----
T ss_pred --------------------------EEEECC---------cCHHHHHHHHhc--CCCCEEEECcHHHHHHHHhc-----
Confidence 222222 111111111211 36899999999999998731
Q ss_pred cCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 475 QDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 475 rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
...+++.+.+|||||||.|+ +++...+..|+..+...+.. ....+|+|+||||+++.+..+
T Consensus 220 -~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SAT~~~~v~~~ 281 (563)
T 3i5x_A 220 -SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSATLDDKVQKL 281 (563)
T ss_dssp -HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEESSCCTHHHHH
T ss_pred -cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-----------------CccCceEEEEEccCCHHHHHH
Confidence 13468999999999999998 55567788888777544321 112379999999999999999
Q ss_pred HHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHH
Q 004428 554 FNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFV 632 (754)
Q Consensus 554 ~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~v 632 (754)
+..++.++ ..+.+..... ........+.|.+...+.. ..++...+..++..+.. ....++||||+|+..+.
T Consensus 282 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~ 353 (563)
T 3i5x_A 282 ANNIMNKK-ECLFLDTVDK-NEPEAHERIDQSVVISEKF------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTS 353 (563)
T ss_dssp TTTTCCSS-EEEEEESSCS-SSCSSCTTEEEEEEEESST------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHH
T ss_pred HHHhcCCC-ceEEEeccCC-CCccccccCceEEEECchh------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHH
Confidence 98888774 3444432211 1112345677777765432 11222233334444433 45679999999999999
Q ss_pred HHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhcc
Q 004428 633 RLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVN 709 (754)
Q Consensus 633 rlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erig 709 (754)
.|..+|++. ++.+..+|+.+++.+|.++...|++|+++|||||++++ ||+||++|++||+|++|.++..|.||+|
T Consensus 354 ~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~--~GiDip~v~~VI~~~~p~s~~~y~Qr~G 431 (563)
T 3i5x_A 354 FLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA--RGMDFPNVHEVLQIGVPSELANYIHRIG 431 (563)
T ss_dssp HHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGT--SSCCCTTCCEEEEESCCSSTTHHHHHHT
T ss_pred HHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhh--cCCCcccCCEEEEECCCCchhhhhhhcC
Confidence 999999986 99999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCC-CceEEEEechhcHHHHHHH
Q 004428 710 MLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 710 rt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||.+ .|.|++|+++.|...++++
T Consensus 432 RagR~g~~g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 432 RTARSGKEGSSVLFICKDELPFVREL 457 (563)
T ss_dssp TSSCTTCCEEEEEEEEGGGHHHHHHH
T ss_pred ccccCCCCceEEEEEchhHHHHHHHH
Confidence 999998 6899999999997666555
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=386.79 Aligned_cols=357 Identities=15% Similarity=0.215 Sum_probs=280.3
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|.+++|++.|+++|.+. |+.. |+|+|++++|.+++++|++.+++|| +|||.+|++++++++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~ai~~i~~~~~~lv~a~TG---------sGKT~~~~~~~~~~l 99 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAY----GFEK-PSAIQQRAIKQIIKGRDVIAQSQSG---------TGKTATFSISVLQCL 99 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHTC
T ss_pred cCCCCHhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CCchHHHHHHHHHHH
Confidence 4467899999999999999885 7876 8999999999999999999999998 899999999999987
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
... ...+++|||+|||+||.|+.+.+.+++.... .+....+
T Consensus 100 ~~~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~~~~ 140 (410)
T 2j0s_A 100 DIQ--------------------------------VRETQALILAPTRELAVQIQKGLLALGDYMN-------VQCHACI 140 (410)
T ss_dssp CTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCEEEEC
T ss_pred hhc--------------------------------cCCceEEEEcCcHHHHHHHHHHHHHHhccCC-------eEEEEEE
Confidence 421 1247899999999999999999999875432 1111222
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. .... .++... ++++|||+||++|.+++
T Consensus 141 g~~-----------------------------------------------~~~~-~~~~~~--~~~~ivv~Tp~~l~~~l 170 (410)
T 2j0s_A 141 GGT-----------------------------------------------NVGE-DIRKLD--YGQHVVAGTPGRVFDMI 170 (410)
T ss_dssp TTS-----------------------------------------------CHHH-HHHHHH--HCCSEEEECHHHHHHHH
T ss_pred CCC-----------------------------------------------CHHH-HHHHhh--cCCCEEEcCHHHHHHHH
Confidence 222 1111 111111 46899999999999998
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
.. ....++.+.++||||||.|+..+| ...+...+..+|.. +|+++||||+
T Consensus 171 ~~-------~~~~~~~~~~vViDEah~~~~~~~--~~~~~~i~~~~~~~---------------------~~~i~~SAT~ 220 (410)
T 2j0s_A 171 RR-------RSLRTRAIKMLVLDEADEMLNKGF--KEQIYDVYRYLPPA---------------------TQVVLISATL 220 (410)
T ss_dssp HT-------TSSCCTTCCEEEEETHHHHTSTTT--HHHHHHHHTTSCTT---------------------CEEEEEESCC
T ss_pred Hh-------CCccHhheeEEEEccHHHHHhhhh--HHHHHHHHHhCccC---------------------ceEEEEEcCC
Confidence 72 344688999999999999984333 33444445555543 8999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEec
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLS 626 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~ 626 (754)
++++..++..++.++ +.+..... ......+.|.+..+... +.++.. +...+.....+++||||+
T Consensus 221 ~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~------~~k~~~----l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 221 PHEILEMTNKFMTDP---IRILVKRD---ELTLEGIKQFFVAVERE------EWKFDT----LCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp CHHHHTTGGGTCSSC---EEECCCGG---GCSCTTEEEEEEEESST------THHHHH----HHHHHHHHTSSEEEEECS
T ss_pred CHHHHHHHHHHcCCC---EEEEecCc---cccCCCceEEEEEeCcH------HhHHHH----HHHHHHhcCCCcEEEEEc
Confidence 999988887777764 23321111 12345788888877543 223332 222223334579999999
Q ss_pred chhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhh
Q 004428 627 SYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPE 706 (754)
Q Consensus 627 Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~e 706 (754)
+...+..|.++|.+.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||++|++||+|++|.++..|.|
T Consensus 285 ~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidi~~v~~Vi~~~~p~s~~~~~Q 362 (410)
T 2j0s_A 285 TKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA--RGLDVPQVSLIINYDLPNNRELYIH 362 (410)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS--SSCCCTTEEEEEESSCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh--CcCCcccCCEEEEECCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 707 IVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 707 rigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+||+||.+ .|.|++|++..|...|++|
T Consensus 363 r~GR~gR~g~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 363 RIGRSGRYGRKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp HHTTSSGGGCCEEEEEEEEGGGHHHHHHH
T ss_pred hcccccCCCCceEEEEEecHHHHHHHHHH
Confidence 999999986 7999999999997666543
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=369.78 Aligned_cols=360 Identities=15% Similarity=0.197 Sum_probs=267.7
Q ss_pred cCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 225 FLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 225 ~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
.+....+|.++++++.+++.+.+. |+.. |+|+|+++++.+++++|+++++.|| +|||.+|++++++
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~~~~~~ 100 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAY----GFEK-PSAIQQRAILPCIKGYDVIAQAQSG---------TGKTATFAISILQ 100 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEECCCSC---------SSSHHHHHHHHHH
T ss_pred ccchhcCHhhCCCCHHHHHHHHHc----CCCC-CCHHHHHHhHHHhCCCCEEEECCCC---------CcccHHHHHHHHH
Confidence 334467899999999999999874 7765 8999999999999999999999998 8999999999999
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... ...+++|||+|||+||.|+.+.+.+++.... .+...
T Consensus 101 ~~~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~~~~ 141 (414)
T 3eiq_A 101 QIELD--------------------------------LKATQALVLAPTRELAQQIQKVVMALGDYMG-------ASCHA 141 (414)
T ss_dssp HCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHGGGSC-------CCEEE
T ss_pred HHhhc--------------------------------CCceeEEEEeChHHHHHHHHHHHHHHhcccC-------ceEEE
Confidence 88532 1246899999999999999999999864321 11112
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
.+|+. ......-++. ..+++|||+||++|.+
T Consensus 142 ~~~~~-----------------------------------------------~~~~~~~~~~--~~~~~iiv~T~~~l~~ 172 (414)
T 3eiq_A 142 CIGGT-----------------------------------------------NVRAEVQKLQ--MEAPHIIVGTPGRVFD 172 (414)
T ss_dssp CCCCT-----------------------------------------------THHHHHHHHT--TTCCSEEEECHHHHHH
T ss_pred EECCc-----------------------------------------------chHHHHHHHh--cCCCCEEEECHHHHHH
Confidence 22221 1111111221 1468999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
++.. ....+..+.++||||||.|+.. .+...+...+..++.. +|+|++||
T Consensus 173 ~l~~-------~~~~~~~~~~vViDEah~~~~~--~~~~~~~~~~~~~~~~---------------------~~~i~~SA 222 (414)
T 3eiq_A 173 MLNR-------RYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSN---------------------TQVVLLSA 222 (414)
T ss_dssp HHHH-------TSSCSTTCCEEEECSHHHHHHT--TTHHHHHHHHTTSCTT---------------------CEEEEECS
T ss_pred HHHc-------CCcccccCcEEEEECHHHhhcc--CcHHHHHHHHHhCCCC---------------------CeEEEEEE
Confidence 8863 3445788999999999998843 3334444555555543 89999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|+++.+..++..++.++. .+.+... ......+.|.+..+.... .++. .+...+.....+++|||
T Consensus 223 T~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~----~l~~~~~~~~~~~~lvf 286 (414)
T 3eiq_A 223 TMPSDVLEVTKKFMRDPI-RILVKKE-----ELTLEGIRQFYINVEREE------WKLD----TLCDLYETLTITQAVIF 286 (414)
T ss_dssp CCCHHHHHHHTTTCSSCE-EECCCCC-----CCCTTSCCEEEEECSSST------THHH----HHHHHHHSSCCSSCEEE
T ss_pred ecCHHHHHHHHHHcCCCE-EEEecCC-----ccCCCCceEEEEEeChHH------hHHH----HHHHHHHhCCCCcEEEE
Confidence 999999999988877742 2222111 123456788877765432 2332 22222333456799999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
|++...+..+.++|++.++.+..+|+.+++.+|.+++..|++|+.+|||+|+.+. +|+||++|++||+|++|.++..|
T Consensus 287 ~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidip~v~~Vi~~~~p~s~~~~ 364 (414)
T 3eiq_A 287 INTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA--RGIDVQQVSLVINYDLPTNRENY 364 (414)
T ss_dssp CSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC----CCGGGCSCEEESSCCSSTHHH
T ss_pred eCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc--cCCCccCCCEEEEeCCCCCHHHh
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 705 PEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 705 ~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
.||+||+||.+ .|.|++||++.|...++++
T Consensus 365 ~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 365 IHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp HHHSCCC-------CEEEEECSTHHHHHHHH
T ss_pred hhhcCcccCCCCCceEEEEEcHHHHHHHHHH
Confidence 99999999987 6999999999887766544
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=360.86 Aligned_cols=354 Identities=17% Similarity=0.203 Sum_probs=272.2
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHH
Q 004428 226 LKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSL 303 (754)
Q Consensus 226 ~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~L 303 (754)
+....+|.+++|++.+++++.+. |+.. |+|+|++++|.++++ +|++.+++|| +|||.+|+++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~~~lv~apTG---------sGKT~~~~~~~~ 86 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAM----GFNR-PSKIQENALPLMLAEPPQNLIAQSQSG---------TGKTAAFVLAML 86 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHSSSCCCEEEECCTT---------SCHHHHHHHHHH
T ss_pred ccccCCHhhCCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCCeEEEECCCC---------chHHHHHHHHHH
Confidence 34567899999999999999875 7875 899999999999987 9999999998 899999999999
Q ss_pred HHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccc
Q 004428 304 NHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFC 383 (754)
Q Consensus 304 NHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~ 383 (754)
+++... -..+++|||+|||+||.|+.+.+.++....... +..
T Consensus 87 ~~~~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~------~~~ 128 (412)
T 3fht_A 87 SQVEPA--------------------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL------KLA 128 (412)
T ss_dssp HHCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC------CEE
T ss_pred HHhhhc--------------------------------CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc------eEE
Confidence 988532 125789999999999999999999986432111 111
Q ss_pred cccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHH
Q 004428 384 DEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLH 463 (754)
Q Consensus 384 ~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr 463 (754)
...|+. .+.+. . ...++||||||++|.
T Consensus 129 ~~~~~~-----------------------------------------------~~~~~-~-----~~~~~ivv~T~~~l~ 155 (412)
T 3fht_A 129 YAVRGN-----------------------------------------------KLERG-Q-----KISEQIVIGTPGTVL 155 (412)
T ss_dssp EECTTC-----------------------------------------------CCCTT-C-----CCCCSEEEECHHHHH
T ss_pred EeecCc-----------------------------------------------chhhh-h-----cCCCCEEEECchHHH
Confidence 111111 00000 0 135799999999999
Q ss_pred HHHhhhhcccccCcccCCceeEEEEecchhhhh-cCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEE
Q 004428 464 QKMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVL 541 (754)
Q Consensus 464 ~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTll 541 (754)
.++.. .....++.+.++||||||.|+. +.+ ..+..++ ..+|. .+|+++
T Consensus 156 ~~~~~------~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~---~~~~~---------------------~~~~i~ 205 (412)
T 3fht_A 156 DWCSK------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ---RMLPR---------------------NCQMLL 205 (412)
T ss_dssp HHHTT------SCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHH---HTSCT---------------------TCEEEE
T ss_pred HHHHh------cCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHH---hhCCC---------------------CceEEE
Confidence 98862 2344578999999999999983 333 3344333 33343 279999
Q ss_pred EcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 542 LSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 542 FSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
+|||+++.+..++..++.++. .+.+... ......+.|.+..+.. .+.++.. +...+.....+++
T Consensus 206 ~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~~----l~~~~~~~~~~~~ 269 (412)
T 3fht_A 206 FSATFEDSVWKFAQKVVPDPN-VIKLKRE-----EETLDTIKQYYVLCSS------RDEKFQA----LCNLYGAITIAQA 269 (412)
T ss_dssp EESCCCHHHHHHHHHHSSSCE-EECCCGG-----GSSCTTEEEEEEECSS------HHHHHHH----HHHHHHHHSSSEE
T ss_pred EEeecCHHHHHHHHHhcCCCe-EEeeccc-----cccccCceEEEEEcCC------hHHHHHH----HHHHHhhcCCCCE
Confidence 999999999999988887742 2222211 1235567887776542 2334432 2222233356799
Q ss_pred EEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCC
Q 004428 622 MLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERK 701 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~p 701 (754)
||||++...+..|..+|.+.++.+..+|+.+++.+|.+++..|++|+.+|||+|+.+. +|+||++|++||+|++|.++
T Consensus 270 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 270 MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA--RGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT--SSCCCTTEEEEEESSCCBCS
T ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc--cCCCccCCCEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999765
Q ss_pred ------CchhhhccccCCCC-CceEEEEechhc-HHHHH
Q 004428 702 ------EFYPEIVNMLEGSH-NMTCTVLFSRFD-MLRLE 732 (754)
Q Consensus 702 ------efY~erigrt~ra~-~g~~~~L~sk~D-~~~LE 732 (754)
..|.||+||+||.+ .|.|++|++..+ ...+.
T Consensus 348 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 386 (412)
T 3fht_A 348 DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILN 386 (412)
T ss_dssp SSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHH
T ss_pred CCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHH
Confidence 58999999999987 699999998554 44343
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=389.80 Aligned_cols=350 Identities=16% Similarity=0.187 Sum_probs=154.6
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
....+|.+++|++.+++++.++ |+.. |||+|++++|.++++ +|++++++|| +|||.+|++|+++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~----g~~~-p~~~Q~~ai~~il~~~~~~~l~~a~TG---------sGKT~~~~l~il~ 154 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAM----GFNR-PSKIQENALPLMLAEPPQNLIAQSQSG---------TGKTAAFVLAMLS 154 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHTSBSCCEEEEECCSS---------SSHHHHHHHHHHT
T ss_pred cCcCCHHHcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHHcCCCCcEEEEcCCC---------CchhHHHHHHHHH
Confidence 3467899999999999999875 8876 899999999999987 9999999998 8999999999998
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... -..|+||||+|||+||.|+.+.+.++....... +...
T Consensus 155 ~l~~~--------------------------------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~------~~~~ 196 (479)
T 3fmp_B 155 QVEPA--------------------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL------KLAY 196 (479)
T ss_dssp TCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTC------CEEE
T ss_pred HHhhc--------------------------------CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCc------eEEE
Confidence 87432 135789999999999999999998885432100 1111
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
..|+. .+.+. . ...++||||||++|.+
T Consensus 197 ~~~~~-----------------------------------------------~~~~~-~-----~~~~~Ivv~Tp~~l~~ 223 (479)
T 3fmp_B 197 AVRGN-----------------------------------------------KLERG-Q-----KISEQIVIGTPGTVLD 223 (479)
T ss_dssp ESTTC-----------------------------------------------CCCTT-C-----CCCCSEEEECHHHHHH
T ss_pred EeCCc-----------------------------------------------ccccc-c-----cCCCCEEEECchHHHH
Confidence 11111 01110 0 1357999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
++.+ .....++.+.++||||||+|+. ++.+...+...+..+|.. +|+|+|||
T Consensus 224 ~l~~------~~~~~~~~~~~iViDEah~~~~-~~~~~~~~~~i~~~~~~~---------------------~~~i~~SA 275 (479)
T 3fmp_B 224 WCSK------LKFIDPKKIKVFVLDEADVMIA-TQGHQDQSIRIQRMLPRN---------------------CQMLLFSA 275 (479)
T ss_dssp HHTT------SCCCCGGGCCEEEECCHHHHHT-STTHHHHHHHHHTTSCTT---------------------SEEEEEES
T ss_pred HHHh------cCCcCcccCCEEEEECHHHHhh-cCCcHHHHHHHHhhCCcc---------------------ceEEEEeC
Confidence 9862 2344579999999999999983 123333444445555543 89999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|+++++..++..++.++ ..|.+... ......+.|.+..+... +.++.. +...+.....+++|||
T Consensus 276 T~~~~~~~~~~~~~~~~-~~i~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~----l~~~~~~~~~~~~lvF 339 (479)
T 3fmp_B 276 TFEDSVWKFAQKVVPDP-NVIKLKRE-----EETLDTIKQYYVLCSSR------DEKFQA----LCNLYGAITIAQAMIF 339 (479)
T ss_dssp CCCHHHHHHHHHHSSSE-EEEEEC--------------------------------------------------------
T ss_pred CCCHHHHHHHHHHcCCC-eEEecccc-----ccCcCCceEEEEEeCCH------HHHHHH----HHHHHhhccCCceEEE
Confidence 99999999999888774 24444322 12345677777665431 223221 2222222345789999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCC----
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPER---- 700 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~---- 700 (754)
|++...+.+|...|...++.+..+|+.+++.+|.+++..|++|+++|||+|++++ ||+||++|++||+|++|.+
T Consensus 340 ~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~--~GlDip~v~~VI~~d~p~~~~~~ 417 (479)
T 3fmp_B 340 CHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA--RGIDVEQVSVVINFDLPVDKDGN 417 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccc--cCCccccCCEEEEecCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999 9999999999999999964
Q ss_pred --CCchhhhccccCCCC-CceEEEEechhc
Q 004428 701 --KEFYPEIVNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 701 --pefY~erigrt~ra~-~g~~~~L~sk~D 727 (754)
...|.||+||+||.+ .|.|++||+..+
T Consensus 418 ~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 418 PDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ------------------------------
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 578999999999987 599999998655
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=353.18 Aligned_cols=354 Identities=15% Similarity=0.209 Sum_probs=272.9
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHHH
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNH 305 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNH 305 (754)
...+|++++|++.|+++|.+. |+.. |+|+|+++++.++++ +|++.+++|| +|||.+|+++++++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~~~lv~a~TG---------sGKT~~~~~~~~~~ 68 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAM----KFQK-PSKIQERALPLLLHNPPRNMIAQSQSG---------TGKTAAFSLTMLTR 68 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHCSSCCCEEEECCTT---------SCHHHHHHHHHHHH
T ss_pred cccCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCCeEEEECCCC---------CcHHHHHHHHHHHH
Confidence 357899999999999999885 7765 899999999999998 9999999998 89999999999998
Q ss_pred HhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccc
Q 004428 306 IFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDE 385 (754)
Q Consensus 306 v~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~e 385 (754)
+.... ..++||||+|||+||.|+.+.+.++..... + .....
T Consensus 69 ~~~~~--------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~------~~~~~ 109 (395)
T 3pey_A 69 VNPED--------------------------------ASPQAICLAPSRELARQTLEVVQEMGKFTK-I------TSQLI 109 (395)
T ss_dssp CCTTC--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSC-C------CEEEE
T ss_pred hccCC--------------------------------CCccEEEECCCHHHHHHHHHHHHHHhcccC-e------eEEEE
Confidence 85320 247899999999999999999999864332 0 11111
Q ss_pred cCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHH
Q 004428 386 FGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQK 465 (754)
Q Consensus 386 fg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~l 465 (754)
+|+.. .+. ...+++|||+||++|..+
T Consensus 110 ~~~~~------------------------------------------------~~~------~~~~~~iiv~T~~~l~~~ 135 (395)
T 3pey_A 110 VPDSF------------------------------------------------EKN------KQINAQVIVGTPGTVLDL 135 (395)
T ss_dssp STTSS------------------------------------------------CTT------SCBCCSEEEECHHHHHHH
T ss_pred ecCch------------------------------------------------hhh------ccCCCCEEEEcHHHHHHH
Confidence 11110 000 013589999999999998
Q ss_pred HhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 466 MTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 466 I~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
+.. ....++.+.++||||||.|+.. |.....+...+..+|.. +|++++|||
T Consensus 136 ~~~-------~~~~~~~~~~iIiDEah~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~i~~SAT 186 (395)
T 3pey_A 136 MRR-------KLMQLQKIKIFVLDEADNMLDQ-QGLGDQCIRVKRFLPKD---------------------TQLVLFSAT 186 (395)
T ss_dssp HHT-------TCBCCTTCCEEEEETHHHHHHS-TTHHHHHHHHHHTSCTT---------------------CEEEEEESC
T ss_pred HHc-------CCcccccCCEEEEEChhhhcCc-cccHHHHHHHHHhCCCC---------------------cEEEEEEec
Confidence 862 3446899999999999999852 22223333334444442 799999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEE
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLF 624 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIF 624 (754)
+++.+..++..++.++. .+.+... ......+.+.+..+.. ...++. ++..+.. ...+++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~-----~l~~~~~~~~~~~~lvf 249 (395)
T 3pey_A 187 FADAVRQYAKKIVPNAN-TLELQTN-----EVNVDAIKQLYMDCKN------EADKFD-----VLTELYGLMTIGSSIIF 249 (395)
T ss_dssp CCHHHHHHHHHHSCSCE-EECCCGG-----GCSCTTEEEEEEECSS------HHHHHH-----HHHHHHTTTTSSEEEEE
T ss_pred CCHHHHHHHHHhCCCCe-EEEcccc-----ccccccccEEEEEcCc------hHHHHH-----HHHHHHHhccCCCEEEE
Confidence 99999999988877642 2222111 1224567777776542 123332 3333322 345899999
Q ss_pred ecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC-----
Q 004428 625 LSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE----- 699 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~----- 699 (754)
|++...+..+.++|+..++.+..+|+.+++.+|.+++..|++|+.+|||+|+.+. +|+||++|++||+|++|.
T Consensus 250 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~--~Gidip~~~~Vi~~~~p~~~~~~ 327 (395)
T 3pey_A 250 VATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLA--RGIDIPTVSMVVNYDLPTLANGQ 327 (395)
T ss_dssp CSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGS--SSCCCTTEEEEEESSCCBCTTSS
T ss_pred eCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhh--cCCCcccCCEEEEcCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred -CCCchhhhccccCCCC-CceEEEEechhcH----HHHHHHhC
Q 004428 700 -RKEFYPEIVNMLEGSH-NMTCTVLFSRFDM----LRLERIVG 736 (754)
Q Consensus 700 -~pefY~erigrt~ra~-~g~~~~L~sk~D~----~~LErIVG 736 (754)
++..|.||+||+||.+ .|.|+++++..+. ..+++..+
T Consensus 328 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 328 ADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 8899999999999987 5899999986543 34455555
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=359.25 Aligned_cols=354 Identities=18% Similarity=0.246 Sum_probs=274.1
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
....+|++++|++.|+++|.+. |+.. |+|+|+++++.+++++|++.+++|| +|||.+|+++++.++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~li~a~TG---------sGKT~~~~~~~~~~~ 83 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEA----GFEK-PSPIQEEAIPVAITGRDILARAKNG---------TGKTAAFVIPTLEKV 83 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHHTCCEEEECCTT---------SCHHHHHHHHHHHHC
T ss_pred cccCChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCEEEECCCC---------cHHHHHHHHHHHHHH
Confidence 3457899999999999999885 7875 8999999999999999999999998 899999999999987
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
... ...+++|||+|||+||.|+.+.+.++.+... + +....+
T Consensus 84 ~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~------~~~~~~ 124 (400)
T 1s2m_A 84 KPK--------------------------------LNKIQALIMVPTRELALQTSQVVRTLGKHCG-I------SCMVTT 124 (400)
T ss_dssp CTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-C------CEEEEC
T ss_pred hhc--------------------------------cCCccEEEEcCCHHHHHHHHHHHHHHhcccC-c------eEEEEe
Confidence 432 1246899999999999999999999875432 0 111112
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. .......++. .+++|||+||++|..++
T Consensus 125 g~~-----------------------------------------------~~~~~~~~~~---~~~~Ivv~T~~~l~~~~ 154 (400)
T 1s2m_A 125 GGT-----------------------------------------------NLRDDILRLN---ETVHILVGTPGRVLDLA 154 (400)
T ss_dssp SSS-----------------------------------------------CHHHHHHHTT---SCCSEEEECHHHHHHHH
T ss_pred CCc-----------------------------------------------chHHHHHHhc---CCCCEEEEchHHHHHHH
Confidence 211 1111112221 46899999999999988
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhhcCch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILMQNWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
.. ....++.+.++||||||.|+...|. .+..+ +..+|. .+|.+++|||
T Consensus 155 ~~-------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i---~~~~~~---------------------~~~~i~lSAT 203 (400)
T 1s2m_A 155 SR-------KVADLSDCSLFIMDEADKMLSRDFKTIIEQI---LSFLPP---------------------THQSLLFSAT 203 (400)
T ss_dssp HT-------TCSCCTTCCEEEEESHHHHSSHHHHHHHHHH---HTTSCS---------------------SCEEEEEESC
T ss_pred Hh-------CCcccccCCEEEEeCchHhhhhchHHHHHHH---HHhCCc---------------------CceEEEEEec
Confidence 62 3456899999999999999854342 23323 333343 3799999999
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEe
Q 004428 546 PNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFL 625 (754)
Q Consensus 546 ~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv 625 (754)
+++.+..++..++.++. .+.+... .....+.|.+..+... .+.... ..+ +.....+++||||
T Consensus 204 ~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~-------~k~~~l-~~~---~~~~~~~~~lVf~ 265 (400)
T 1s2m_A 204 FPLTVKEFMVKHLHKPY-EINLMEE------LTLKGITQYYAFVEER-------QKLHCL-NTL---FSKLQINQAIIFC 265 (400)
T ss_dssp CCHHHHHHHHHHCSSCE-EESCCSS------CBCTTEEEEEEECCGG-------GHHHHH-HHH---HHHSCCSEEEEEC
T ss_pred CCHHHHHHHHHHcCCCe-EEEeccc------cccCCceeEEEEechh-------hHHHHH-HHH---HhhcCCCcEEEEE
Confidence 99999998888877641 2221111 1234677777765432 222211 122 2233567999999
Q ss_pred cchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchh
Q 004428 626 SSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYP 705 (754)
Q Consensus 626 ~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~ 705 (754)
++......|.++|+..++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.
T Consensus 266 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~--~Gidip~~~~Vi~~~~p~s~~~~~ 343 (400)
T 1s2m_A 266 NSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT--RGIDIQAVNVVINFDFPKTAETYL 343 (400)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS--SSCCCTTEEEEEESSCCSSHHHHH
T ss_pred ecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc--cCCCccCCCEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 706 EIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 706 erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
||+||+||.+ .|.|++||++.|...|++|
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred HhcchhcCCCCCceEEEEeccchHHHHHHH
Confidence 9999999987 7999999999997666544
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=352.21 Aligned_cols=348 Identities=17% Similarity=0.191 Sum_probs=269.9
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|++++|++.+++++.++ |+.. |+|+|+++++.++.++|++..++|| +|||.+|+++++.++...
T Consensus 8 ~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~~~~~~~l~~~ 73 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC----GFEH-PSEVQHECIPQAILGMDVLCQAKSG---------MGKTAVFVLATLQQLEPV 73 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH----SCCS-CCHHHHHHHHHHTTTCCEEEECSSC---------SSHHHHHHHHHHHHCCCC
T ss_pred CChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCcEEEECCCC---------CcHHHHHHHHHHHhhccc
Confidence 5699999999999999886 7876 8999999999999999999999998 899999999999987432
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
-..+++|||+|||+||.|+.+.+.++......+ +....+|+.
T Consensus 74 --------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~------~~~~~~g~~ 115 (391)
T 1xti_A 74 --------------------------------TGQVSVLVMCHTRELAFQISKEYERFSKYMPNV------KVAVFFGGL 115 (391)
T ss_dssp --------------------------------TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC------CEEEECTTS
T ss_pred --------------------------------CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe------EEEEEeCCC
Confidence 024789999999999999999999986532111 111112211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
......-.+.. ..++|||+||.+|..++..
T Consensus 116 -----------------------------------------------~~~~~~~~~~~--~~~~iiv~T~~~l~~~~~~- 145 (391)
T 1xti_A 116 -----------------------------------------------SIKKDEEVLKK--NCPHIVVGTPGRILALARN- 145 (391)
T ss_dssp -----------------------------------------------CHHHHHHHHHH--SCCSEEEECHHHHHHHHHT-
T ss_pred -----------------------------------------------CHHHHHHHHhc--CCCCEEEECHHHHHHHHHc-
Confidence 11111111111 3579999999999998862
Q ss_pred hcccccCcccCCceeEEEEecchhhhh--cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILM--QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLm--QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....++.+.++||||||.|+. ..+..+. ..+...|. .+|++++|||++
T Consensus 146 ------~~~~~~~~~~vViDEaH~~~~~~~~~~~~~---~~~~~~~~---------------------~~~~i~~SAT~~ 195 (391)
T 1xti_A 146 ------KSLNLKHIKHFILDECDKMLEQLDMRRDVQ---EIFRMTPH---------------------EKQVMMFSATLS 195 (391)
T ss_dssp ------TSSCCTTCSEEEECSHHHHTSSHHHHHHHH---HHHHTSCS---------------------SSEEEEEESSCC
T ss_pred ------CCccccccCEEEEeCHHHHhhccchHHHHH---HHHhhCCC---------------------CceEEEEEeeCC
Confidence 334689999999999999974 2233333 33344443 289999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..++..++.++ ..+.+.... ......+.+.+..+... .+.. .+...+.....+++||||++
T Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~----~l~~~l~~~~~~~~lvf~~~ 259 (391)
T 1xti_A 196 KEIRPVCRKFMQDP-MEIFVDDET----KLTLHGLQQYYVKLKDN-------EKNR----KLFDLLDVLEFNQVVIFVKS 259 (391)
T ss_dssp STHHHHHHHHCSSC-EEEECCCCC----CCCCTTCEEEEEECCGG-------GHHH----HHHHHHHHSCCSEEEEECSC
T ss_pred HHHHHHHHHHcCCC-eEEEecCcc----ccCcccceEEEEEcCch-------hHHH----HHHHHHHhcCCCcEEEEeCc
Confidence 99999998888774 233332211 11234677777765432 2222 22222333456899999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
...+..+..+|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||
T Consensus 260 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gidi~~~~~Vi~~~~p~s~~~~~Qr 337 (391)
T 1xti_A 260 VQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG--RGMDIERVNIAFNYDMPEDSDTYLHR 337 (391)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCS--SCBCCTTEEEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhh--cCCCcccCCEEEEeCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhc
Q 004428 708 VNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D 727 (754)
+||++|.+ .|.|++|++..+
T Consensus 338 ~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 338 VARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp HCBCSSSCCCCEEEEEECSHH
T ss_pred cccccCCCCceEEEEEEcccc
Confidence 99999987 799999998764
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=344.91 Aligned_cols=347 Identities=16% Similarity=0.236 Sum_probs=274.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC-ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY-RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y-~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
..+|++++|++.+.++|.+. |+.. |+|+|+++++.++++ ++++..++|| +|||.+|+++++.++.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~~l~~~~TG---------sGKT~~~~~~~~~~~~ 70 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNK----GFEK-PTDIQMKVIPLFLNDEYNIVAQARTG---------SGKTASFAIPLIELVN 70 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHHTCSEEEEECCSS---------SSHHHHHHHHHHHHSC
T ss_pred cCchhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCCEEEECCCC---------ChHHHHHHHHHHHHhc
Confidence 45799999999999999886 7765 899999999999988 7999999998 8999999999998874
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
.. ..+++|||+|||+||.|+.+.+.++.+... .+....+|
T Consensus 71 ~~---------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~v~~~~~ 110 (367)
T 1hv8_A 71 EN---------------------------------NGIEAIILTPTRELAIQVADEIESLKGNKN-------LKIAKIYG 110 (367)
T ss_dssp SS---------------------------------SSCCEEEECSCHHHHHHHHHHHHHHHCSSC-------CCEEEECT
T ss_pred cc---------------------------------CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC-------ceEEEEEC
Confidence 21 246899999999999999999999865321 11222222
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. ... ...+.. .+++|||+||.+|...+.
T Consensus 111 ~~-----------------------------------------------~~~-~~~~~~---~~~~iiv~T~~~l~~~~~ 139 (367)
T 1hv8_A 111 GK-----------------------------------------------AIY-PQIKAL---KNANIVVGTPGRILDHIN 139 (367)
T ss_dssp TS-----------------------------------------------CHH-HHHHHH---HTCSEEEECHHHHHHHHH
T ss_pred Cc-----------------------------------------------chH-HHHhhc---CCCCEEEecHHHHHHHHH
Confidence 21 111 111111 258999999999999886
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
. ....++.+.++||||||.+.... ....+...++..+.. +|.+++|||++
T Consensus 140 ~-------~~~~~~~~~~iIiDEah~~~~~~--~~~~~~~~~~~~~~~---------------------~~~i~~SAT~~ 189 (367)
T 1hv8_A 140 R-------GTLNLKNVKYFILDEADEMLNMG--FIKDVEKILNACNKD---------------------KRILLFSATMP 189 (367)
T ss_dssp T-------TCSCTTSCCEEEEETHHHHHTTT--THHHHHHHHHTSCSS---------------------CEEEEECSSCC
T ss_pred c-------CCcccccCCEEEEeCchHhhhhc--hHHHHHHHHHhCCCC---------------------ceEEEEeeccC
Confidence 2 33458899999999999998433 334444444444432 79999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+.+..++..++.++. .+. . .....+.+.+..+.. ..++.. ++ .+......++||||++
T Consensus 190 ~~~~~~~~~~~~~~~-~~~--~-------~~~~~~~~~~~~~~~-------~~~~~~----l~-~~l~~~~~~~lvf~~~ 247 (367)
T 1hv8_A 190 REILNLAKKYMGDYS-FIK--A-------KINANIEQSYVEVNE-------NERFEA----LC-RLLKNKEFYGLVFCKT 247 (367)
T ss_dssp HHHHHHHHHHCCSEE-EEE--C-------CSSSSSEEEEEECCG-------GGHHHH----HH-HHHCSTTCCEEEECSS
T ss_pred HHHHHHHHHHcCCCe-EEE--e-------cCCCCceEEEEEeCh-------HHHHHH----HH-HHHhcCCCcEEEEECC
Confidence 999988888776642 111 1 123367777776543 234432 22 2233456789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhh
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEI 707 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~er 707 (754)
..++..+.++|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.+|
T Consensus 248 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 325 (367)
T 1hv8_A 248 KRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMS--RGIDVNDLNCVINYHLPQNPESYMHR 325 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHH--HHCCCSCCSEEEESSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhh--cCCCcccCCEEEEecCCCCHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 708 VNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 708 igrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
+||++|.+ .|.|+++|++.|...++.|
T Consensus 326 ~GR~~R~g~~g~~~~~~~~~~~~~~~~i 353 (367)
T 1hv8_A 326 IGRTGRAGKKGKAISIINRREYKKLRYI 353 (367)
T ss_dssp STTTCCSSSCCEEEEEECTTSHHHHHHH
T ss_pred ccccccCCCccEEEEEEcHHHHHHHHHH
Confidence 99999987 7999999999998766554
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=357.88 Aligned_cols=356 Identities=15% Similarity=0.211 Sum_probs=156.8
Q ss_pred cCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 225 FLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 225 ~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
..+...+|.+++|++.|++.|... |+.. |+|+|+++++.+++++|++.+++|| +|||.+|++++++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~lv~~~TG---------sGKT~~~~~~~~~ 81 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGY----GFEE-PSAIQQRAIMPIIEGHDVLAQAQSG---------TGKTGTFSIAALQ 81 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHHTCCEEECCCSS---------HHHHHHHHHHHHH
T ss_pred cccccCChhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHH
Confidence 345567899999999999999886 7766 8999999999999999999999998 9999999999999
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... ...+++|||+|||+||.|+.+.+.++..... .+...
T Consensus 82 ~l~~~--------------------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~~~~ 122 (394)
T 1fuu_A 82 RIDTS--------------------------------VKAPQALMLAPTRELALQIQKVVMALAFHMD-------IKVHA 122 (394)
T ss_dssp HCCTT--------------------------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-------CCEEE
T ss_pred Hhhcc--------------------------------CCCCCEEEEcCCHHHHHHHHHHHHHHhccCC-------eeEEE
Confidence 87532 1357899999999999999999999865431 11111
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
..|+. .... ..+.. .+++|||+||.+|..
T Consensus 123 ~~g~~-----------------------------------------------~~~~-~~~~~---~~~~i~v~T~~~l~~ 151 (394)
T 1fuu_A 123 CIGGT-----------------------------------------------SFVE-DAEGL---RDAQIVVGTPGRVFD 151 (394)
T ss_dssp ECSSC-----------------------------------------------CHHH-HHHHH---HHCSEEEECHHHHHH
T ss_pred EeCCC-----------------------------------------------chHH-HHhhc---CCCCEEEECHHHHHH
Confidence 22211 1111 11111 258999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEc
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLS 543 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFS 543 (754)
.+.. ....++.+.++|+||||.|+..+| ..+..++.. +|. .+|.+++|
T Consensus 152 ~~~~-------~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~---~~~---------------------~~~~i~~S 200 (394)
T 1fuu_A 152 NIQR-------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL---LPP---------------------TTQVVLLS 200 (394)
T ss_dssp HHHT-------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH---SCT---------------------TCEEEEEC
T ss_pred HHHh-------CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh---CCC---------------------CceEEEEE
Confidence 8862 234588999999999999985444 445555544 333 27999999
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhh-hcCCCcEE
Q 004428 544 YHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIK-DSIQGGIM 622 (754)
Q Consensus 544 At~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~-~~~~~~tL 622 (754)
||+++.+..++..++.++ ..+.+.... .....+.|.+..+... +.+.. .+..+. ....+++|
T Consensus 201 AT~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~-----~l~~~~~~~~~~~~l 263 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMRNP-VRILVKKDE-----LTLEGIKQFYVNVEEE------EYKYE-----CLTDLYDSISVTQAV 263 (394)
T ss_dssp SSCCHHHHHHHHHHCCSC-EEEEECC------------------------------------------------------
T ss_pred EecCHHHHHHHHHhcCCC-eEEEecCcc-----ccCCCceEEEEEcCch------hhHHH-----HHHHHHhcCCCCcEE
Confidence 999999999998888774 233332211 1234566666655432 11222 222222 22457899
Q ss_pred EEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC
Q 004428 623 LFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE 702 (754)
Q Consensus 623 IFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe 702 (754)
|||++...+..+...|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++.
T Consensus 264 Vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gldi~~~~~Vi~~~~p~s~~ 341 (394)
T 1fuu_A 264 IFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA--RGIDVQQVSLVINYDLPANKE 341 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhh--cCCCcccCCEEEEeCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 703 FYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 703 fY~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
.|.||+||+||.+ .|.|++++++.|...++++
T Consensus 342 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 374 (394)
T 1fuu_A 342 NYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 374 (394)
T ss_dssp ---------------------------------
T ss_pred HHHHHcCcccCCCCCceEEEEEchhHHHHHHHH
Confidence 9999999999987 7999999999886555443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=384.00 Aligned_cols=366 Identities=11% Similarity=0.048 Sum_probs=243.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|..++|++++|+ ++.++|| +|||.||+||++.+.+.
T Consensus 80 lG~-~-pt~VQ~~~ip~ll~G~--Iaea~TG---------eGKTlaf~LP~~l~aL~----------------------- 123 (844)
T 1tf5_A 80 TGM-F-PFKVQLMGGVALHDGN--IAEMKTG---------EGKTLTSTLPVYLNALT----------------------- 123 (844)
T ss_dssp HSC-C-CCHHHHHHHHHHHTTS--EEECCTT---------SCHHHHHHHHHHHHHTT-----------------------
T ss_pred cCC-C-CcHHHHHhhHHHhCCC--EEEccCC---------cHHHHHHHHHHHHHHHc-----------------------
Confidence 588 4 8999999999999999 8999998 99999999999955431
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+.||||+|||+||.|+.+.+..|....+ + +....+||.
T Consensus 124 ------------g~~vlVltptreLA~qd~e~~~~l~~~lg-l------~v~~i~gg~---------------------- 162 (844)
T 1tf5_A 124 ------------GKGVHVVTVNEYLASRDAEQMGKIFEFLG-L------TVGLNLNSM---------------------- 162 (844)
T ss_dssp ------------SSCEEEEESSHHHHHHHHHHHHHHHHHTT-C------CEEECCTTS----------------------
T ss_pred ------------CCCEEEEeCCHHHHHHHHHHHHHHHhhcC-C------eEEEEeCCC----------------------
Confidence 24699999999999999999999864321 1 222233332
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCCceeEEEEec
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
....+... |++||+||||+|| .+++...-. ..++...|+.+.++||||
T Consensus 163 -------------------------~~~~r~~~-----~~~dIv~gTpgrlgfD~L~D~m~-~~~~~l~lr~~~~lVlDE 211 (844)
T 1tf5_A 163 -------------------------SKDEKREA-----YAADITYSTNNELGFDYLRDNMV-LYKEQMVQRPLHFAVIDE 211 (844)
T ss_dssp -------------------------CHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCCCCEEEEET
T ss_pred -------------------------CHHHHHHh-----cCCCEEEECchhhhHHHHHHhhh-cchhhhcccCCCEEEECc
Confidence 22223332 5799999999999 555432100 012334689999999999
Q ss_pred chhhh-hcC-c------------hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE----------------
Q 004428 491 ADIIL-MQN-W------------SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV---------------- 540 (754)
Q Consensus 491 AD~mL-mQN-w------------~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl---------------- 540 (754)
||+|| +.. + .+...|-..+..+|.+ .|| .++. .-|||+
T Consensus 212 aD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~---~~y------~vd~---k~rq~~lt~~g~~~~e~~~~i~ 279 (844)
T 1tf5_A 212 VDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAE---KDY------TYDI---KTKAVQLTEEGMTKAEKAFGID 279 (844)
T ss_dssp HHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSS---SSB------CCCS---SSCCCCBCHHHHHHHHHHTTCS
T ss_pred hhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCccc---ccc------eecc---ccceEEecHHHHHHHHHHhCcc
Confidence 99998 432 1 1233444444555642 111 1221 238998
Q ss_pred -EEcCCCCH---HHHHHHH--Hhhc-C--C---CceEEEeecccCccc-------------------------cccccee
Q 004428 541 -LLSYHPNP---EINAFFN--HHCA-N--Y---QGKVKLACEYKGVLP-------------------------KVLLNVR 583 (754)
Q Consensus 541 -lFSAt~~p---einsL~~--~~~~-N--~---~G~Vkv~~~~~g~i~-------------------------~v~~~I~ 583 (754)
|||||+++ .|+.+++ .++. + | .|+|.+....+|.+- .+...|.
T Consensus 280 ~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It 359 (844)
T 1tf5_A 280 NLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATIT 359 (844)
T ss_dssp CTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEE
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceee
Confidence 99999874 4544432 2222 1 1 144444433333221 0001111
Q ss_pred EE------------------------------EEEeccCcc----------cchhHHHHHHHHHHHhHHhhhcCCCcEEE
Q 004428 584 QI------------------------------YERFNADSI----------AKADDARLEYFTKKVFPKIKDSIQGGIML 623 (754)
Q Consensus 584 Q~------------------------------f~r~~~~s~----------~~~~d~Rf~yF~~~iLp~l~~~~~~~tLI 623 (754)
+. +..++...+ ......|+...+..+. .+. ....++||
T Consensus 360 ~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~-~~~-~~~~pvLV 437 (844)
T 1tf5_A 360 FQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVA-QRY-MTGQPVLV 437 (844)
T ss_dssp HHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHH-HHH-HHTCCEEE
T ss_pred HHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHH-HHH-hcCCcEEE
Confidence 10 011111100 0123456654333221 111 13457999
Q ss_pred EecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC--------CCCeEEEc
Q 004428 624 FLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------GIQNLIIY 695 (754)
Q Consensus 624 Fv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------gV~~VIfY 695 (754)
||+|......|...|++.|+++..||+...++++..+...|+.| +||||||+|+ ||+||+ |+.|||||
T Consensus 438 ft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg--RG~DI~l~~~V~~~ggl~VIn~ 513 (844)
T 1tf5_A 438 GTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG--RGTDIKLGEGVKELGGLAVVGT 513 (844)
T ss_dssp EESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS--TTCCCCCCTTSGGGTSEEEEES
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc--cCcCccccchhhhcCCcEEEEe
Confidence 99999999999999999999999999998877776665566665 6999999999 999999 99999999
Q ss_pred cCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 696 SLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 696 ~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
++|.+++.|.||+|||||+| .|.+++++|..|. |-|+.|..+...++.
T Consensus 514 d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~--l~r~f~~~~~~~~~~ 562 (844)
T 1tf5_A 514 ERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE--LMRRFGAERTMAMLD 562 (844)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS--GGGSSHHHHHHHHHH
T ss_pred cCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH--HHHHHhHHHHHHHHH
Confidence 99999999999999999998 6999999998873 233455555555543
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=320.63 Aligned_cols=328 Identities=17% Similarity=0.224 Sum_probs=255.0
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccc
Q 004428 237 LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKN 316 (754)
Q Consensus 237 L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~kn 316 (754)
|++.|.+++.++ |+.. |+|.|+++++.+++++|++..++|| +|||.+|+++++.+
T Consensus 1 l~~~i~~~l~~~----g~~~-l~~~Q~~~i~~i~~~~~~lv~~~TG---------sGKT~~~~~~~~~~----------- 55 (337)
T 2z0m_A 1 MNEKIEQAIREM----GFKN-FTEVQSKTIPLMLQGKNVVVRAKTG---------SGKTAAYAIPILEL----------- 55 (337)
T ss_dssp CCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHH-----------
T ss_pred CCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhcCCCEEEEcCCC---------CcHHHHHHHHHHhh-----------
Confidence 467788888774 8876 8999999999999999999999998 89999999998762
Q ss_pred hhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcc
Q 004428 317 DTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKD 396 (754)
Q Consensus 317 n~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~ 396 (754)
.+++|||+|||+||.|+.+.+.++.+... .+....+|+.
T Consensus 56 ---------------------------~~~~liv~P~~~L~~q~~~~~~~~~~~~~-------~~~~~~~~~~------- 94 (337)
T 2z0m_A 56 ---------------------------GMKSLVVTPTRELTRQVASHIRDIGRYMD-------TKVAEVYGGM------- 94 (337)
T ss_dssp ---------------------------TCCEEEECSSHHHHHHHHHHHHHHTTTSC-------CCEEEECTTS-------
T ss_pred ---------------------------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC-------CcEEEEECCc-------
Confidence 14689999999999999999999865431 0111222221
Q ss_pred cchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccC
Q 004428 397 DDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQD 476 (754)
Q Consensus 397 ~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd 476 (754)
... ...+.. .+++|+|+||.+|..++.. .
T Consensus 95 ----------------------------------------~~~-~~~~~~---~~~~i~v~T~~~l~~~~~~-------~ 123 (337)
T 2z0m_A 95 ----------------------------------------PYK-AQINRV---RNADIVVATPGRLLDLWSK-------G 123 (337)
T ss_dssp ----------------------------------------CHH-HHHHHH---TTCSEEEECHHHHHHHHHT-------T
T ss_pred ----------------------------------------chH-HHHhhc---CCCCEEEECHHHHHHHHHc-------C
Confidence 111 112212 3589999999999998762 3
Q ss_pred cccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHH
Q 004428 477 VDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFN 555 (754)
Q Consensus 477 ~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~ 555 (754)
...++.+.++|+||||.|.. +.+..+..++.. .|. .+|++++|||+++.+..++.
T Consensus 124 ~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~---~~~---------------------~~~~~~~SAT~~~~~~~~~~ 179 (337)
T 2z0m_A 124 VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ---TSN---------------------RKITGLFSATIPEEIRKVVK 179 (337)
T ss_dssp SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHH---CTT---------------------CSEEEEEESCCCHHHHHHHH
T ss_pred CcchhhCcEEEEEChHHhhccccHHHHHHHHhh---CCc---------------------ccEEEEEeCcCCHHHHHHHH
Confidence 44588999999999999984 334455555543 343 27899999999999999999
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR 635 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr 635 (754)
.++.++. .+ ... .....+.+.|..+..... ..+..+......++||||++..+...+.
T Consensus 180 ~~~~~~~-~~--~~~------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~lvf~~~~~~~~~l~ 237 (337)
T 2z0m_A 180 DFITNYE-EI--EAC------IGLANVEHKFVHVKDDWR-------------SKVQALRENKDKGVIVFVRTRNRVAKLV 237 (337)
T ss_dssp HHSCSCE-EE--ECS------GGGGGEEEEEEECSSSSH-------------HHHHHHHTCCCSSEEEECSCHHHHHHHH
T ss_pred HhcCCce-ee--ecc------cccCCceEEEEEeChHHH-------------HHHHHHHhCCCCcEEEEEcCHHHHHHHH
Confidence 8887752 22 111 123457777777653211 1223344456789999999999999999
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 636 NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 636 n~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
+.|+ .+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.+|+||+||.+
T Consensus 238 ~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~--~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g 311 (337)
T 2z0m_A 238 RLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS--RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMG 311 (337)
T ss_dssp TTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHH--TTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGG
T ss_pred HHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccc--cCCCccCCCEEEEecCCCCHHHhhHhcCccccCC
Confidence 9887 588999999999999999999999999999999999 9999999999999999999999999999999987
Q ss_pred -CceEEEEechhcHHHHHHH
Q 004428 716 -NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 716 -~g~~~~L~sk~D~~~LErI 734 (754)
.|.|+++++ .|...+++|
T Consensus 312 ~~g~~~~~~~-~~~~~~~~i 330 (337)
T 2z0m_A 312 RKGEAITFIL-NEYWLEKEV 330 (337)
T ss_dssp CCEEEEEEES-SCHHHHHHH
T ss_pred CCceEEEEEe-CcHHHHHHH
Confidence 689999998 665444433
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=335.60 Aligned_cols=330 Identities=14% Similarity=0.121 Sum_probs=235.4
Q ss_pred CCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
|+ . |||+|++++|.+++++|++++++|| +|||.+|+++++.++.
T Consensus 19 ~~-~-~~~~Q~~~i~~i~~~~~~lv~apTG---------sGKT~~~l~~~~~~~~------------------------- 62 (414)
T 3oiy_A 19 GK-D-LTGYQRLWAKRIVQGKSFTMVAPTG---------VGKTTFGMMTALWLAR------------------------- 62 (414)
T ss_dssp SS-C-CCHHHHHHHHHHTTTCCEECCSCSS---------SSHHHHHHHHHHHHHT-------------------------
T ss_pred CC-C-CCHHHHHHHHHHhcCCCEEEEeCCC---------CCHHHHHHHHHHHHhc-------------------------
Confidence 55 3 8999999999999999999999998 8999999999988761
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNS 412 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~ 412 (754)
..++||||+|||+||.|+.+.+.++++ .. + +....+|+...
T Consensus 63 ----------~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~-~------~v~~~~g~~~~--------------------- 103 (414)
T 3oiy_A 63 ----------KGKKSALVFPTVTLVKQTLERLQKLAD-EK-V------KIFGFYSSMKK--------------------- 103 (414)
T ss_dssp ----------TTCCEEEEESSHHHHHHHHHHHHHHCC-SS-C------CEEECCTTSCH---------------------
T ss_pred ----------CCCEEEEEECCHHHHHHHHHHHHHHcc-CC-c------eEEEEECCCCh---------------------
Confidence 136899999999999999999999876 21 1 22223332210
Q ss_pred CCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecch
Q 004428 413 QKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHAD 492 (754)
Q Consensus 413 ~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD 492 (754)
+-....++.... ..++||||||++|.+++.. ..++.+.++||||||
T Consensus 104 ------------------------~~~~~~~~~l~~-~~~~Iiv~Tp~~l~~~l~~---------~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 104 ------------------------EEKEKFEKSFEE-DDYHILVFSTQFVSKNREK---------LSQKRFDFVFVDDVD 149 (414)
T ss_dssp ------------------------HHHHHHHHHHHH-TCCSEEEEEHHHHHHCHHH---------HTTCCCSEEEESCHH
T ss_pred ------------------------hhHHHHHHHhhc-CCCCEEEECHHHHHHHHHH---------hccccccEEEEeChH
Confidence 000112221211 2389999999999988762 347799999999995
Q ss_pred ----------hhh--hcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC-CCHHHHHHHHHhh
Q 004428 493 ----------IIL--MQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH-PNPEINAFFNHHC 558 (754)
Q Consensus 493 ----------~mL--mQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt-~~peinsL~~~~~ 558 (754)
+|+ ++++.. +..++..+...+. +.+++ .+..+|+++|||| .++.+...+.+.+
T Consensus 150 ~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~------~~~l~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (414)
T 3oiy_A 150 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI------YERPK-------NLKPGILVVSSATAKPRGIRPLLFRDL 216 (414)
T ss_dssp HHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC------CCCCT-------TCCCCEEEESSCCSSCCSSTTHHHHHH
T ss_pred hhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh------hhhcc-------cCCCceEEEEecCCCcchhHHHHHHHh
Confidence 444 677777 7778877631100 00000 0134899999999 5655553333333
Q ss_pred cCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHH
Q 004428 559 ANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFL 638 (754)
Q Consensus 559 ~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~L 638 (754)
.+. .+.. .......+.|.+..++. ..++. .++.. ...++||||++...+.+|..+|
T Consensus 217 ~~~----~~~~-----~~~~~~~i~~~~~~~~~-------~~~l~----~~l~~----~~~~~lVF~~~~~~~~~l~~~L 272 (414)
T 3oiy_A 217 LNF----TVGR-----LVSVARNITHVRISSRS-------KEKLV----ELLEI----FRDGILIFAQTEEEGKELYEYL 272 (414)
T ss_dssp HSC----CSSC-----CCCCCCSEEEEEESSCC-------HHHHH----HHHHH----HCSSEEEEESSHHHHHHHHHHH
T ss_pred hcc----CcCc-----cccccccchheeeccCH-------HHHHH----HHHHH----cCCCEEEEECCHHHHHHHHHHH
Confidence 321 1111 11234567887765421 11111 22222 2489999999999999999999
Q ss_pred HhCCCceE-eecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEEEccCC--CCCCchhhhccc
Q 004428 639 KSQNASFC-LLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLIIYSLP--ERKEFYPEIVNM 710 (754)
Q Consensus 639 k~~~~~f~-~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VIfY~lP--~~pefY~erigr 710 (754)
++.++++. .+|+. +|. +..|++|+++|||+ |+.+. ||+||++ |++||+|++| .++..|.||+||
T Consensus 273 ~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~--~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR 344 (414)
T 3oiy_A 273 KRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLT--RGVDLPERIKYVIFWGTPSGPDVYTYIQASGR 344 (414)
T ss_dssp HHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCC--CCCCCTTTCCEEEEESCCTTTCHHHHHHHHGG
T ss_pred HHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhh--ccCccccccCEEEEECCCCCCCHHHHHHHhCc
Confidence 99999998 99994 333 99999999999999 99999 9999999 9999999999 999999999999
Q ss_pred cCCCC-----CceEEEEechhc-HHHHHHHhC
Q 004428 711 LEGSH-----NMTCTVLFSRFD-MLRLERIVG 736 (754)
Q Consensus 711 t~ra~-----~g~~~~L~sk~D-~~~LErIVG 736 (754)
+||.+ .|.|++|+...+ ...|++.++
T Consensus 345 ~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 345 SSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp GCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred cccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 99975 588998884332 245555555
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.92 Aligned_cols=352 Identities=11% Similarity=0.075 Sum_probs=258.2
Q ss_pred cCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCC
Q 004428 232 YSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRD 311 (754)
Q Consensus 232 f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~ 311 (754)
+.++++++.+.+.|.+.+ |+.. |+|+|+++|+.+++++|+++.++|| +|||.+|+||+|.+
T Consensus 23 ~~~~~l~~~l~~~L~~~f---g~~~-~rp~Q~~~i~~il~g~d~lv~~pTG---------sGKTl~~~lpal~~------ 83 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVF---KLEK-FRPLQLETINVTMAGKEVFLVMPTG---------GGKSLCYQLPALCS------ 83 (591)
T ss_dssp CSCSTTHHHHHHHHHHTS---CCCS-CCTTHHHHHHHHHTTCCEEEECCTT---------SCTTHHHHHHHHTS------
T ss_pred cccCCCCHHHHHHHHHHh---CCCC-CCHHHHHHHHHHHcCCCEEEEECCC---------ChHHHHHHHHHHHc------
Confidence 456889999999998853 7766 8999999999999999999999998 89999999999741
Q ss_pred ccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCcc
Q 004428 312 LVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKE 391 (754)
Q Consensus 312 ~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~ 391 (754)
.+++|||+|||+|+.|+++.|.++.-.. ....|+...
T Consensus 84 --------------------------------~g~~lVisP~~~L~~q~~~~l~~~gi~~-----------~~l~~~~~~ 120 (591)
T 2v1x_A 84 --------------------------------DGFTLVICPLISLMEDQLMVLKQLGISA-----------TMLNASSSK 120 (591)
T ss_dssp --------------------------------SSEEEEECSCHHHHHHHHHHHHHHTCCE-----------EECCSSCCH
T ss_pred --------------------------------CCcEEEEeCHHHHHHHHHHHHHhcCCcE-----------EEEeCCCCH
Confidence 1379999999999999999999873211 111221100
Q ss_pred ccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHh-hhcccCCCCEEEeCchhHH---HHHh
Q 004428 392 EEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIK-LYNDFYTSDMIVASPINLH---QKMT 467 (754)
Q Consensus 392 ~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lk-Lys~Fy~sDIIVASPlgLr---~lI~ 467 (754)
.-.+..+. +.......+|||+||.+|. .++.
T Consensus 121 ---------------------------------------------~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~ 155 (591)
T 2v1x_A 121 ---------------------------------------------EHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMS 155 (591)
T ss_dssp ---------------------------------------------HHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHH
T ss_pred ---------------------------------------------HHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHH
Confidence 00000111 1111246899999999874 2222
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL 542 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF 542 (754)
.- .....++.|.++||||||.|+. |.| +..+-......| -+|+|+|
T Consensus 156 ~l-----~~~~~~~~i~~iViDEAH~is~--~g~dfr~~~~~l~~l~~~~~----------------------~~~ii~l 206 (591)
T 2v1x_A 156 RL-----EKAYEARRFTRIAVDEVHCCSQ--WGHDFRPDYKALGILKRQFP----------------------NASLIGL 206 (591)
T ss_dssp HH-----HHHHHTTCEEEEEEETGGGGST--TCTTCCGGGGGGGHHHHHCT----------------------TSEEEEE
T ss_pred HH-----HhhhhccCCcEEEEECcccccc--cccccHHHHHHHHHHHHhCC----------------------CCcEEEE
Confidence 10 0133578999999999999973 432 111100111112 2799999
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhc-CCCcE
Q 004428 543 SYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDS-IQGGI 621 (754)
Q Consensus 543 SAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~-~~~~t 621 (754)
|||.++.+...+..++... ..+.+.... ..+.+...+.. ... ....++. .++..+... ...++
T Consensus 207 SAT~~~~v~~~i~~~l~~~-~~~~~~~~~------~r~nl~~~v~~--~~~---~~~~~~~----~l~~~l~~~~~~~~~ 270 (591)
T 2v1x_A 207 TATATNHVLTDAQKILCIE-KCFTFTASF------NRPNLYYEVRQ--KPS---NTEDFIE----DIVKLINGRYKGQSG 270 (591)
T ss_dssp ESSCCHHHHHHHHHHTTCC-SCEEEECCC------CCTTEEEEEEE--CCS---SHHHHHH----HHHHHHTTTTTTCEE
T ss_pred ecCCCHHHHHHHHHHhCCC-CcEEEecCC------CCcccEEEEEe--CCC---cHHHHHH----HHHHHHHHhccCCCe
Confidence 9999999988887776653 233332210 12233222221 111 1122332 344444332 45789
Q ss_pred EEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCC
Q 004428 622 MLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERK 701 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~p 701 (754)
||||+|..++..|...|++.++.+..+|+.+++.+|.++...|++|+++|||+|+.+. +|+|+++|++||+|++|.++
T Consensus 271 IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~--~GID~p~V~~VI~~~~p~s~ 348 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG--MGIDKPDVRFVIHHSMSKSM 348 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC--TTCCCSCEEEEEESSCCSSH
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh--cCCCcccccEEEEeCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999988 99999999999999999999
Q ss_pred CchhhhccccCCCC-CceEEEEechhcHHHHHHHhCc
Q 004428 702 EFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 702 efY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt 737 (754)
+.|.|++||+||.| .|.|++||+..|...+..++..
T Consensus 349 ~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 349 ENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTT
T ss_pred HHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhh
Confidence 99999999999987 6899999999999999888764
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=360.86 Aligned_cols=361 Identities=13% Similarity=0.065 Sum_probs=220.2
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|||+|..++|++++|+ ++.++|| +|||.||+||++.+.+.
T Consensus 75 p~~VQ~~~i~~ll~G~--Iaem~TG---------sGKTlaf~LP~l~~~l~----------------------------- 114 (853)
T 2fsf_A 75 HFDVQLLGGMVLNERC--IAEMRTG---------EGKTLTATLPAYLNALT----------------------------- 114 (853)
T ss_dssp CCHHHHHHHHHHHSSE--EEECCTT---------SCHHHHHHHHHHHHHTT-----------------------------
T ss_pred CChHHHhhcccccCCe--eeeecCC---------chHHHHHHHHHHHHHHc-----------------------------
Confidence 8999999999999999 8999998 99999999999976531
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
.++||||+|||+||.|+.+.+..++.... + +....||
T Consensus 115 ------g~~vlVltPTreLA~Q~~e~~~~l~~~lg-l------~v~~i~G------------------------------ 151 (853)
T 2fsf_A 115 ------GKGVHVVTVNDYLAQRDAENNRPLFEFLG-L------TVGINLP------------------------------ 151 (853)
T ss_dssp ------SSCCEEEESSHHHHHHHHHHHHHHHHHTT-C------CEEECCT------------------------------
T ss_pred ------CCcEEEEcCCHHHHHHHHHHHHHHHHhcC-C------eEEEEeC------------------------------
Confidence 24699999999999999999999864321 1 1222333
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCCceeEEEEecchhhh-
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL- 495 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL- 495 (754)
| +....+.+. |++|||||||||| .+++...-. ..++...++.+.+|||||||+||
T Consensus 152 --------G---------~~~~~r~~~-----~~~dIvvgTpgrl~fDyLrd~~~-~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 152 --------G---------MPAPAKREA-----YAADITYGTNNEYGFDYLRDNMA-FSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp --------T---------CCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCSCCEEEESCHHHHTT
T ss_pred --------C---------CCHHHHHHh-----cCCCEEEECCchhhHHHHHhhhh-ccHhHhcccCCcEEEECchHHHHH
Confidence 2 222233333 4799999999999 787763110 01223468999999999999999
Q ss_pred hc----------------CchHHHHHHHHhccCCCCCC--------CCchhhhhhhhcccCCCccccEE-----------
Q 004428 496 MQ----------------NWSWLIEVVEQLNRIPSKQH--------GTDVMRIRQWYLDGYSRFYRQTV----------- 540 (754)
Q Consensus 496 mQ----------------Nw~hv~~Il~~Ln~~Pk~~h--------~~DfsRvR~w~L~~~ak~~RQTl----------- 540 (754)
+. ++..+..|+..| |+... ..|| .++. .-||++
T Consensus 209 D~a~tpLIiSg~~~~~~~~y~~i~~iv~~L---~~~~~~~~~~~~~~~dy------~vde---k~rqv~lte~g~~~~e~ 276 (853)
T 2fsf_A 209 DEARTPLIISGPAEDSSEMYKRVNKIIPHL---IRQEKEDSETFQGEGHF------SVDE---KSRQVNLTERGLVLIEE 276 (853)
T ss_dssp TTTTCEEEEEEC--------------------------------------------------------------------
T ss_pred hcCcccccccCCCccchhHHHHHHHHHHhc---hhhhccccccccccccc------eecc---ccceEEEcHHHHHHHHH
Confidence 33 345566666554 43100 0122 1111 125543
Q ss_pred -------------EEcCCCCHH---HHHHH--HHhhc---CC---CceEEEeecccCcc---------------------
Q 004428 541 -------------LLSYHPNPE---INAFF--NHHCA---NY---QGKVKLACEYKGVL--------------------- 575 (754)
Q Consensus 541 -------------lFSAt~~pe---insL~--~~~~~---N~---~G~Vkv~~~~~g~i--------------------- 575 (754)
|||||+++- |+..+ +.++. +| .|.|.+....+|.+
T Consensus 277 ~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~ 356 (853)
T 2fsf_A 277 LLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQ 356 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccce
Confidence 999998753 33221 11111 00 02221111111100
Q ss_pred ----cccccceeE-EE-----------------------------EEeccCc----------ccchhHHHHHHHHHHHhH
Q 004428 576 ----PKVLLNVRQ-IY-----------------------------ERFNADS----------IAKADDARLEYFTKKVFP 611 (754)
Q Consensus 576 ----~~v~~~I~Q-~f-----------------------------~r~~~~s----------~~~~~d~Rf~yF~~~iLp 611 (754)
+.+...|.| .| ..++... .-.....|++..+ .
T Consensus 357 I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~----~ 432 (853)
T 2fsf_A 357 IQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAII----E 432 (853)
T ss_dssp CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHH----H
T ss_pred ecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHH----H
Confidence 011122221 00 1111100 0012345665333 3
Q ss_pred Hhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 612 KIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 612 ~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
.|.. ....++||||+|......|...|++.|++...||+...++++..+...|+.| .||||||+|+ ||.||+.+
T Consensus 433 ~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg--RGtDI~l~ 508 (853)
T 2fsf_A 433 DIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG--RGTDIVLG 508 (853)
T ss_dssp HHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS--SCSCCCTT
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc--CCcCccCC
Confidence 3322 2346799999999999999999999999999999998888887777889988 6999999999 99999974
Q ss_pred -------------------------------------CeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHH
Q 004428 690 -------------------------------------QNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 690 -------------------------------------~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
.|||+|++|.++..|.||+|||||.| .|+++.++|..| .|
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD--~l 586 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED--AL 586 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS--GG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH--HH
Confidence 69999999999999999999999998 699999999888 34
Q ss_pred HHHhCchHHHHhhhc
Q 004428 732 ERIVGSAHAKKMVKS 746 (754)
Q Consensus 732 ErIVGt~ra~~m~~s 746 (754)
=|+.|..|...|+..
T Consensus 587 ~r~f~~~~~~~~~~~ 601 (853)
T 2fsf_A 587 MRIFASDRVSGMMRK 601 (853)
T ss_dssp GGTTCCHHHHTTGGG
T ss_pred HHHhhHHHHHHHHHh
Confidence 466888888777753
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=323.78 Aligned_cols=348 Identities=11% Similarity=0.090 Sum_probs=210.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|+|.++++.+++++|++.++.|| +|||.+|++++++++.+.+.
T Consensus 5 ~~~~Q~~~i~~~~~~~~~l~~~~tG---------sGKT~~~~~~~~~~~~~~~~-------------------------- 49 (555)
T 3tbk_A 5 PRNYQLELALPAKKGKNTIICAPTG---------CGKTFVSLLICEHHLKKFPC-------------------------- 49 (555)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHHHTCCS--------------------------
T ss_pred CcHHHHHHHHHHhCCCCEEEEeCCC---------ChHHHHHHHHHHHHHHhccc--------------------------
Confidence 7999999999999999999999998 89999999999999975421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
...++||||+|||+||.|+.+.+.++++... .+....+|+...
T Consensus 50 ----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-------~~~~~~~g~~~~-------------------------- 92 (555)
T 3tbk_A 50 ----GQKGKVVFFANQIPVYEQQATVFSRYFERLG-------YNIASISGATSD-------------------------- 92 (555)
T ss_dssp ----SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT-------CCEEEECTTTGG--------------------------
T ss_pred ----CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC-------cEEEEEcCCCcc--------------------------
Confidence 1257899999999999999999999865321 122223333210
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
....+.+ . .++||||+||++|..++.. .....++.+.++||||||.|...
T Consensus 93 -------------------~~~~~~~--~---~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 93 -------------------SVSVQHI--I---EDNDIIILTPQILVNNLNN------GAIPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp -------------------GSCHHHH--H---HHCSEEEECHHHHHHHHHT------SSSCCGGGCSEEEETTGGGCSTT
T ss_pred -------------------hhhHHHH--h---cCCCEEEECHHHHHHHHhc------CcccccccCCEEEEECccccCCc
Confidence 0011111 1 2589999999999998862 12226899999999999999843
Q ss_pred CchHHHHHH-HHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH----H---HHHHHHhhcCCC-ceEEEe
Q 004428 498 NWSWLIEVV-EQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE----I---NAFFNHHCANYQ-GKVKLA 568 (754)
Q Consensus 498 Nw~hv~~Il-~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe----i---nsL~~~~~~N~~-G~Vkv~ 568 (754)
. ....++ ..+.... ........|+|++|||.+.. + ..-+...|.+.. ..+...
T Consensus 143 ~--~~~~~~~~~~~~~~----------------~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 204 (555)
T 3tbk_A 143 H--PYNQIMFRYLDHKL----------------GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATV 204 (555)
T ss_dssp C--HHHHHHHHHHHHHT----------------SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECC
T ss_pred c--hHHHHHHHHHHhhh----------------ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeecc
Confidence 2 233333 2222111 11112347999999999541 1 111112222211 112211
Q ss_pred ecccCcccccccceeEEEEEeccCccc-----------------------------------------------------
Q 004428 569 CEYKGVLPKVLLNVRQIYERFNADSIA----------------------------------------------------- 595 (754)
Q Consensus 569 ~~~~g~i~~v~~~I~Q~f~r~~~~s~~----------------------------------------------------- 595 (754)
......+..........+..++.....
T Consensus 205 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 284 (555)
T 3tbk_A 205 RDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSV 284 (555)
T ss_dssp CSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhh
Confidence 100000000001111111111100000
Q ss_pred --------------------------------------------------------------------------------
Q 004428 596 -------------------------------------------------------------------------------- 595 (754)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (754)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (555)
T 3tbk_A 285 FQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSR 364 (555)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHH
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhcc
Confidence
Q ss_pred --chhHHHHHHHHHHHhHHh-hhcCCCcEEEEecchhcHHHHHHHHHhCC------------CceEeecCCCCHHHHHHH
Q 004428 596 --KADDARLEYFTKKVFPKI-KDSIQGGIMLFLSSYFEFVRLRNFLKSQN------------ASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 596 --~~~d~Rf~yF~~~iLp~l-~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------~~f~~Ihey~sq~~r~ra 660 (754)
.....++..+.. +|..+ ......++||||++......|.++|+..+ ..+..+|+.+++.+|.++
T Consensus 365 ~~~~~~~k~~~l~~-~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 365 DPSNENPKLRDLYL-VLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp CGGGCCHHHHHHHH-HHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------
T ss_pred CCCcCCHHHHHHHH-HHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHH
Confidence 000122222222 22222 22346899999999999999999999874 345556669999999999
Q ss_pred HHHHhc-CCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcHH
Q 004428 661 RVWFFE-GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDML 729 (754)
Q Consensus 661 r~~F~~-G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~ 729 (754)
+..|++ |+++|||+|+++. +|+||++|++||+|++|.+|..|.||+|| ||...|.|+.|+++.+..
T Consensus 444 ~~~F~~~g~~~vLvaT~~~~--~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 444 LEAFRASGDNNILIATSVAD--EGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp --------CCSEEEECCCTT--CCEETTSCSEEEEESCCSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred HHHHhcCCCeeEEEEcchhh--cCCccccCCEEEEeCCCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 999999 9999999999999 99999999999999999999999999999 988889999999987654
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=323.83 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=60.0
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCccEEEEcccccccC
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQ------------NASFCLLGDYTEPSDISRARVWFFE-GKRKMILYTERSHFYH 682 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~------------~~~f~~Ihey~sq~~r~rar~~F~~-G~~~ILL~TErahffR 682 (754)
....++||||++...+..|..+|++. |..+..+|+.+++.+|.+++..|++ |+++|||+|+++. +
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~--~ 465 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD--E 465 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchh--c
Confidence 45689999999999999999999876 4555556677999999999999999 9999999999999 9
Q ss_pred ccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 683 RYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 683 r~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
|+||++|++||+|++|.+|..|.||+|| ||...|.|+.|+++.+.
T Consensus 466 GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 466 GIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp -------CEEEEETCCSCHHHHHHC---------CCEEEEESCHHH
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCcch
Confidence 9999999999999999999999999999 99888999999998765
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=342.73 Aligned_cols=362 Identities=12% Similarity=0.053 Sum_probs=249.9
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|..++|++++|+ ++.++|| +|||.+|+||++-+.+.
T Consensus 108 lG~-r-P~~VQ~~~ip~Ll~G~--Iaem~TG---------eGKTLa~~LP~~l~aL~----------------------- 151 (922)
T 1nkt_A 108 LDQ-R-PFDVQVMGAAALHLGN--VAEMKTG---------EGKTLTCVLPAYLNALA----------------------- 151 (922)
T ss_dssp HSC-C-CCHHHHHHHHHHHTTE--EEECCTT---------SCHHHHTHHHHHHHHTT-----------------------
T ss_pred cCC-C-CCHHHHHHHHhHhcCC--EEEecCC---------CccHHHHHHHHHHHHHh-----------------------
Confidence 476 3 8999999999999999 8999998 99999999999765541
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+.|+||+|||+||.|+.+.+..+....+ + +....+|+
T Consensus 152 ------------g~~v~VvTpTreLA~Qdae~m~~l~~~lG-L------sv~~i~gg----------------------- 189 (922)
T 1nkt_A 152 ------------GNGVHIVTVNDYLAKRDSEWMGRVHRFLG-L------QVGVILAT----------------------- 189 (922)
T ss_dssp ------------TSCEEEEESSHHHHHHHHHHHHHHHHHTT-C------CEEECCTT-----------------------
T ss_pred ------------CCCeEEEeCCHHHHHHHHHHHHHHHhhcC-C------eEEEEeCC-----------------------
Confidence 13699999999999999999998864322 1 11122332
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCCceeEEEEec
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
+....+.+. |++||+||||++| .+++...-. ..++...++.+.++||||
T Consensus 190 ------------------------~~~~~r~~~-----y~~DIvygTpgrlgfDyLrD~m~-~~~~~l~lr~l~~lIVDE 239 (922)
T 1nkt_A 190 ------------------------MTPDERRVA-----YNADITYGTNNEFGFDYLRDNMA-HSLDDLVQRGHHYAIVDE 239 (922)
T ss_dssp ------------------------CCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCCCCEEEETT
T ss_pred ------------------------CCHHHHHHh-----cCCCEEEECchHhhHHHHHhhhh-ccHhhhccCCCCEEEEeC
Confidence 222222332 5699999999999 677652110 012234688999999999
Q ss_pred chhhh-h----------------cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE-------------
Q 004428 491 ADIIL-M----------------QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV------------- 540 (754)
Q Consensus 491 AD~mL-m----------------QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl------------- 540 (754)
||+|| + +++..+..|+..| |++ .| +.+|. .-||++
T Consensus 240 aDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L---~~~---~d------y~vDe---k~rqv~Lte~G~~~~e~~l 304 (922)
T 1nkt_A 240 VDSILIDEARTPLIISGPADGASNWYTEFARLAPLM---EKD---VH------YEVDL---RKRTVGVHEKGVEFVEDQL 304 (922)
T ss_dssp HHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHS---CBT---TT------EEEET---TTTEEEECHHHHHHHHHHH
T ss_pred hHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhC---ccc---cc------ceecc---CcceEEecHhHHHHHHHHh
Confidence 99999 3 3445666666654 532 12 22222 238999
Q ss_pred ----EEcCCCCH---HHHHHHHH--hhc-CC-----CceEEEeecccCccc-------------------------cccc
Q 004428 541 ----LLSYHPNP---EINAFFNH--HCA-NY-----QGKVKLACEYKGVLP-------------------------KVLL 580 (754)
Q Consensus 541 ----lFSAt~~p---einsL~~~--~~~-N~-----~G~Vkv~~~~~g~i~-------------------------~v~~ 580 (754)
|||||+++ .|+..++. ++. +. .|.|.+....+|.+- .+..
T Consensus 305 ~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~Tla 384 (922)
T 1nkt_A 305 GIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLA 384 (922)
T ss_dssp TCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEE
T ss_pred CCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccc
Confidence 99999985 44443222 221 10 134444333333211 0111
Q ss_pred cee-EEE-----------------------------EEeccCc----------ccchhHHHHHHHHHHHhHHhhh--cCC
Q 004428 581 NVR-QIY-----------------------------ERFNADS----------IAKADDARLEYFTKKVFPKIKD--SIQ 618 (754)
Q Consensus 581 ~I~-Q~f-----------------------------~r~~~~s----------~~~~~d~Rf~yF~~~iLp~l~~--~~~ 618 (754)
.|. |.| ..++... .-.....|++..+. .|.. ...
T Consensus 385 tIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~----~i~~~~~~g 460 (922)
T 1nkt_A 385 TITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVD----DVAERYAKG 460 (922)
T ss_dssp EECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHH----HHHHHHHTT
T ss_pred eeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHH----HHHHHHhcC
Confidence 222 111 1111100 00123456653333 3322 234
Q ss_pred CcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC---------
Q 004428 619 GGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI--------- 689 (754)
Q Consensus 619 ~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV--------- 689 (754)
.++||||.|......|...|++.|++...||+...++++..+...|+.| .|||||++|+ ||+||+.+
T Consensus 461 qpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg--RGtDI~l~~~~~~~~~~ 536 (922)
T 1nkt_A 461 QPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG--RGTDIVLGGNVDFLTDQ 536 (922)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS--TTCCCCTTCCHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh--cCccccCCCCHHHHHHH
Confidence 5799999999999999999999999999999998777777777788888 6999999999 99999986
Q ss_pred -------------------------------------------CeEEEccCCCCCCchhhhccccCCCC-CceEEEEech
Q 004428 690 -------------------------------------------QNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSR 725 (754)
Q Consensus 690 -------------------------------------------~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk 725 (754)
-|||+|++|.++..|.||+|||||.| .|+++.++|.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 537 RLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp HHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 49999999999999999999999998 6899999998
Q ss_pred hcHHHHHHHhCchHHHHhhhc
Q 004428 726 FDMLRLERIVGSAHAKKMVKS 746 (754)
Q Consensus 726 ~D~~~LErIVGt~ra~~m~~s 746 (754)
.|. |=|+.|..+...|+..
T Consensus 617 eD~--l~r~f~~~~~~~~~~~ 635 (922)
T 1nkt_A 617 GDE--LMRRFNGAALETLLTR 635 (922)
T ss_dssp TSH--HHHHTTHHHHHHHHHH
T ss_pred hHH--HHHHhhhHHHHHHHHH
Confidence 875 5567888888777753
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=322.84 Aligned_cols=344 Identities=13% Similarity=0.076 Sum_probs=251.5
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|.+++|++.+.+.+.+.+ |+.. ++|+|.++|+.+++++|+++.++|| +|||.+|.+|+|.+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~---g~~~-~r~~Q~~~i~~il~g~d~lv~apTG---------sGKTl~~~lp~l~~---- 64 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETF---GYQQ-FRPGQEEIIDTVLSGRDCLVVMPTG---------GGKSLCYQIPALLL---- 64 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTT---CCSS-CCTTHHHHHHHHHTTCCEEEECSCH---------HHHHHHHHHHHHHS----
T ss_pred CChhhCCCCHHHHHHHHHHh---CCCC-CCHHHHHHHHHHHcCCCEEEECCCC---------cHHHHHHHHHHHHh----
Confidence 57899999999999998853 7766 7999999999999999999999998 89999999999731
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
..++|||+|||+|+.|+++.+.++.-... ...|+.
T Consensus 65 ----------------------------------~g~~lvi~P~~aL~~q~~~~l~~~gi~~~-----------~l~~~~ 99 (523)
T 1oyw_A 65 ----------------------------------NGLTVVVSPLISLMKDQVDQLQANGVAAA-----------CLNSTQ 99 (523)
T ss_dssp ----------------------------------SSEEEEECSCHHHHHHHHHHHHHTTCCEE-----------EECTTS
T ss_pred ----------------------------------CCCEEEECChHHHHHHHHHHHHHcCCcEE-----------EEeCCC
Confidence 13589999999999999999988632110 011111
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHH-hhhcccCCCCEEEeCchhHHHHHhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSI-KLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~l-kLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. .-....+ .+.+ ...+|+|+||.+|....-
T Consensus 100 ~~---------------------------------------------~~~~~~~~~~~~--~~~~ilv~Tpe~l~~~~~- 131 (523)
T 1oyw_A 100 TR---------------------------------------------EQQLEVMTGCRT--GQIRLLYIAPERLMLDNF- 131 (523)
T ss_dssp CH---------------------------------------------HHHHHHHHHHHH--TCCSEEEECHHHHTSTTH-
T ss_pred CH---------------------------------------------HHHHHHHHHHhc--CCCCEEEECHHHHhChHH-
Confidence 00 0000001 1111 358999999999953211
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCchH-----HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEc
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNWSW-----LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLS 543 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~h-----v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFS 543 (754)
.+......+.++||||||.|.. |.| ...|...+...|. .|+|++|
T Consensus 132 ------~~~l~~~~~~~vViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~----------------------~~~i~lS 181 (523)
T 1oyw_A 132 ------LEHLAHWNPVLLAVDEAHCISQ--WGHDFRPEYAALGQLRQRFPT----------------------LPFMALT 181 (523)
T ss_dssp ------HHHHTTSCEEEEEESSGGGGCT--TSSCCCHHHHGGGGHHHHCTT----------------------SCEEEEE
T ss_pred ------HHHHhhCCCCEEEEeCccccCc--CCCccHHHHHHHHHHHHhCCC----------------------CCEEEEe
Confidence 0111247899999999999973 432 2222222222222 7899999
Q ss_pred CCCCHHHHHHHHHhhc-CCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEE
Q 004428 544 YHPNPEINAFFNHHCA-NYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIM 622 (754)
Q Consensus 544 At~~peinsL~~~~~~-N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tL 622 (754)
||.++.+..-+.+.+. +.+ .+.+... ..+++.. ...... .+.. .++..+......++|
T Consensus 182 AT~~~~~~~~i~~~l~~~~~-~~~~~~~-------~r~~l~~--~v~~~~-------~~~~----~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 182 ATADDTTRQDIVRLLGLNDP-LIQISSF-------DRPNIRY--MLMEKF-------KPLD----QLMRYVQEQRGKSGI 240 (523)
T ss_dssp SCCCHHHHHHHHHHHTCCSC-EEEECCC-------CCTTEEE--EEEECS-------SHHH----HHHHHHHHTTTCCEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-eEEeCCC-------CCCceEE--EEEeCC-------CHHH----HHHHHHHhcCCCcEE
Confidence 9999987654433332 222 2222111 1123322 222211 1222 233334444557899
Q ss_pred EEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCC
Q 004428 623 LFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKE 702 (754)
Q Consensus 623 IFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pe 702 (754)
|||+|......+...|++.++.+..+|+.+++.+|.++...|++|+.+|||+|+.+. +|+|+++|+.||+|++|.+++
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~--~GiD~p~v~~VI~~~~p~s~~ 318 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG--MGINKPNVRFVVHFDIPRNIE 318 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC--TTTCCTTCCEEEESSCCSSHH
T ss_pred EEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh--CCCCccCccEEEEECCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred chhhhccccCCCC-CceEEEEechhcHHHHHHHhC
Q 004428 703 FYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 703 fY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVG 736 (754)
.|.+++||+||.+ .|.|+.||+..|...+..++.
T Consensus 319 ~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 319 SYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp HHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999988 689999999999877766654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=321.43 Aligned_cols=352 Identities=14% Similarity=0.123 Sum_probs=202.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+.. |+|+|.++++.+++++|++++++|| +|||.+|++++++++.+.+.
T Consensus 9 ~g~~~-lr~~Q~~~i~~~l~g~~~iv~~~TG---------sGKTl~~~~~i~~~l~~~~~-------------------- 58 (696)
T 2ykg_A 9 YSPFK-PRNYQLELALPAMKGKNTIICAPTG---------CGKTFVSLLICEHHLKKFPQ-------------------- 58 (696)
T ss_dssp TC--C-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHHHHHSCT--------------------
T ss_pred cCCCC-ccHHHHHHHHHHHcCCCEEEEcCCC---------chHHHHHHHHHHHHHHhCcc--------------------
Confidence 46665 8999999999999999999999998 89999999999999865411
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
| ..+++|||+|||+||.|+++.+.++++... .+....+|+...
T Consensus 59 ---------~-~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~-------~~v~~~~g~~~~-------------------- 101 (696)
T 2ykg_A 59 ---------G-QKGKVVFFANQIPVYEQNKSVFSKYFERHG-------YRVTGISGATAE-------------------- 101 (696)
T ss_dssp ---------T-CCCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCEEEECSSSCS--------------------
T ss_pred ---------C-CCCeEEEEECCHHHHHHHHHHHHHHhccCC-------ceEEEEeCCccc--------------------
Confidence 1 236899999999999999999999975431 122223333210
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcc-cCCceeEEEEec
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVD-YLSSIEVLIIDH 490 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~d-fLSSIEiLVlDe 490 (754)
......+ . .++||||+||++|...+.. +.. .|+.+.+|||||
T Consensus 102 -------------------------~~~~~~~--~---~~~~Iiv~Tp~~L~~~l~~-------~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 102 -------------------------NVPVEQI--V---ENNDIIILTPQILVNNLKK-------GTIPSLSIFTLMIFDE 144 (696)
T ss_dssp -------------------------SSCHHHH--H---HTCSEEEECHHHHHHHHHT-------TSSCCGGGCSEEEEET
T ss_pred -------------------------cccHHHh--c---cCCCEEEECHHHHHHHHhc-------CcccccccccEEEEeC
Confidence 0111122 1 2589999999999999872 233 589999999999
Q ss_pred chhhhhcCchHHHHHHHH-hccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC-------HH-HHHHHHHhhcCC
Q 004428 491 ADIILMQNWSWLIEVVEQ-LNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN-------PE-INAFFNHHCANY 561 (754)
Q Consensus 491 AD~mLmQNw~hv~~Il~~-Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~-------pe-insL~~~~~~N~ 561 (754)
||.+. ++.....++.. +... +........|.|++|||.. .+ ++.++ ..|.+.
T Consensus 145 aH~~~--~~~~~~~i~~~~l~~~----------------~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~-~~~~~l 205 (696)
T 2ykg_A 145 CHNTS--KQHPYNMIMFNYLDQK----------------LGGSSGPLPQVIGLTASVGVGDAKTTDEALDYIC-KLCASL 205 (696)
T ss_dssp GGGCS--TTCHHHHHHHHHHHHH----------------HTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHH-HHHHHT
T ss_pred CCccc--CcccHHHHHHHHHHHh----------------hcccCCCCCeEEEEeCccccCccccHHHHHHHHH-HHHHhc
Confidence 99988 33333433321 1110 0011123478999999997 33 34443 333321
Q ss_pred CceEEEe-e--------------------cc--cC----ccccccccee-------------------------------
Q 004428 562 QGKVKLA-C--------------------EY--KG----VLPKVLLNVR------------------------------- 583 (754)
Q Consensus 562 ~G~Vkv~-~--------------------~~--~g----~i~~v~~~I~------------------------------- 583 (754)
...+... . .. .. .+..+...+.
T Consensus 206 ~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (696)
T 2ykg_A 206 DASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIV 285 (696)
T ss_dssp TCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHH
T ss_pred CCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHH
Confidence 1111000 0 00 00 0000000000
Q ss_pred ---------EEEEE---------------------------------------------eccCcccc-------------
Q 004428 584 ---------QIYER---------------------------------------------FNADSIAK------------- 596 (754)
Q Consensus 584 ---------Q~f~r---------------------------------------------~~~~s~~~------------- 596 (754)
+.-.. +.......
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (696)
T 2ykg_A 286 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 365 (696)
T ss_dssp HHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 00000 00000000
Q ss_pred -----------hhHHHHHHHHHHHhHHhh-hcCCCcEEEEecchhcHHHHHHHHHhCC----CceEeec--------CCC
Q 004428 597 -----------ADDARLEYFTKKVFPKIK-DSIQGGIMLFLSSYFEFVRLRNFLKSQN----ASFCLLG--------DYT 652 (754)
Q Consensus 597 -----------~~d~Rf~yF~~~iLp~l~-~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~----~~f~~Ih--------ey~ 652 (754)
....++..+.. +|.... .....++||||++...+..|..+|+..+ +++..+| +.+
T Consensus 366 ~~l~~~~~~~~~~~~k~~~L~~-ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~ 444 (696)
T 2ykg_A 366 QELESVSRDPSNENPKLEDLCF-ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 444 (696)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHH-HHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------
T ss_pred HHHHHHhcCCCCCCHHHHHHHH-HHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCC
Confidence 01122222221 222111 1245789999999999999999999988 8999994 599
Q ss_pred CHHHHHHHHHHHhc-CCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcHHH
Q 004428 653 EPSDISRARVWFFE-GKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLR 730 (754)
Q Consensus 653 sq~~r~rar~~F~~-G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~~~ 730 (754)
++.+|.++...|++ |+++|||+|+++. +|+||++|++||+||+|.+++-|.||+|| ||...|.|+.|+++.|...
T Consensus 445 ~~~eR~~v~~~F~~~g~~~vLVaT~v~~--~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 445 TLPAQKCILDAFKASGDHNILIATSVAD--EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ----------------CCSCSEEEESSC--CC---CCCSEEEEESCC--CCCC----------CCCEEEEEESCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccEEEEechhh--cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHH
Confidence 99999999999998 9999999999999 99999999999999999999999999999 9998899999999887633
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=346.56 Aligned_cols=294 Identities=15% Similarity=0.125 Sum_probs=207.7
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|++++|.+++++|++++++|| +|||.+|+++++..+.
T Consensus 75 ~gf-~-pt~iQ~~ai~~il~g~dvlv~ApTG---------SGKTl~~l~~il~~~~------------------------ 119 (1104)
T 4ddu_A 75 FGK-D-LTGYQRLWAKRIVQGKSFTMVAPTG---------VGKTTFGMMTALWLAR------------------------ 119 (1104)
T ss_dssp SSS-C-CCHHHHHHHHHHTTTCCEEECCSTT---------CCHHHHHHHHHHHHHT------------------------
T ss_pred cCC-C-CCHHHHHHHHHHHcCCCEEEEeCCC---------CcHHHHHHHHHHHHHh------------------------
Confidence 466 3 8999999999999999999999998 8999988888777661
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
..++||||+|||+||.|+++.+.+++ ... + +....+|+...
T Consensus 120 -----------~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~-i------~v~~l~Gg~~~-------------------- 160 (1104)
T 4ddu_A 120 -----------KGKKSALVFPTVTLVKQTLERLQKLA-DEK-V------KIFGFYSSMKK-------------------- 160 (1104)
T ss_dssp -----------TTCCEEEEESSHHHHHHHHHHHHTTS-CTT-S------CEEEECTTCCT--------------------
T ss_pred -----------cCCeEEEEechHHHHHHHHHHHHHhh-CCC-C------eEEEEeCCCCH--------------------
Confidence 13689999999999999999999976 211 1 22223333210
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+-..+.+..... ..+|||||||++|.+++.. ..++.+.+||||||
T Consensus 161 -------------------------~er~~~~~~l~~-g~~~IlV~Tp~rL~~~l~~---------l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 161 -------------------------EEKEKFEKSFEE-DDYHILVFSTQFVSKNREK---------LSQKRFDFVFVDDV 205 (1104)
T ss_dssp -------------------------THHHHHHHHHHT-SCCSEEEEEHHHHHHSHHH---------HHTSCCSEEEESCH
T ss_pred -------------------------HHHHHHHHHHhC-CCCCEEEECHHHHHHHHHh---------hcccCcCEEEEeCC
Confidence 001112222221 2489999999999988762 34789999999999
Q ss_pred ----------hhhh--hcCchH-HHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC-CCHHHHHHHHHh
Q 004428 492 ----------DIIL--MQNWSW-LIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH-PNPEINAFFNHH 557 (754)
Q Consensus 492 ----------D~mL--mQNw~h-v~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt-~~peinsL~~~~ 557 (754)
|+|| |++... +..|++.+... . ++.+++ .+..+|+|+|||| .+..+...+.+.
T Consensus 206 H~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~-~-----~~~~~~-------~~~~~q~ll~SAT~~p~~~~~~~~~~ 272 (1104)
T 4ddu_A 206 DAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG-K-----IYERPK-------NLKPGILVVSSATAKPRGIRPLLFRD 272 (1104)
T ss_dssp HHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHT-S-----CCCCCS-------SCCCCEEEEECBSSCCCSSTTHHHHH
T ss_pred CccccccccchhhhHhcCCCHHHHHHHHHhcccc-h-----hhhhhc-------cCCCceEEEEcCCCCcHHHHHHHhhc
Confidence 6776 455556 77788776410 0 000100 1134899999999 555555333222
Q ss_pred hcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHH
Q 004428 558 CANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNF 637 (754)
Q Consensus 558 ~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~ 637 (754)
... +.+... ......+.|.+..++. ...+. .+|.. ..+++||||++...+.+|..+
T Consensus 273 ~l~----i~v~~~-----~~~~~~i~~~~~~~~k-------~~~L~----~ll~~----~~~~~LVF~~s~~~a~~l~~~ 328 (1104)
T 4ddu_A 273 LLN----FTVGRL-----VSVARNITHVRISSRS-------KEKLV----ELLEI----FRDGILIFAQTEEEGKELYEY 328 (1104)
T ss_dssp HTC----CCCCBC-----CCCCCCEEEEEESCCC-------HHHHH----HHHHH----HCSSEEEEESSSHHHHHHHHH
T ss_pred cee----EEeccC-----CCCcCCceeEEEecCH-------HHHHH----HHHHh----cCCCEEEEECcHHHHHHHHHH
Confidence 222 222111 1234568887765421 11211 22222 248999999999999999999
Q ss_pred HHhCCCceE-eecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCC-CCeEEEccCCC
Q 004428 638 LKSQNASFC-LLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRG-IQNLIIYSLPE 699 (754)
Q Consensus 638 Lk~~~~~f~-~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkg-V~~VIfY~lP~ 699 (754)
|+..++.+. .+|+ +|.+ +..|++|+++|||+ |++++ ||+||++ |++|||||+|.
T Consensus 329 L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Tdvla--rGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 329 LKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLT--RGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHC--CSCCCTTTCCEEEEESCCE
T ss_pred HHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeE--ecCcCCCCCCEEEEECCCC
Confidence 999999998 9999 3555 99999999999999 99999 9999999 99999999999
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=347.94 Aligned_cols=312 Identities=9% Similarity=0.085 Sum_probs=214.9
Q ss_pred cCCCCCCHHH-HHHHHHHhhh-CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 232 YSDYGLKPKL-YKHWLDIYNK-SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 232 f~~l~L~~~L-~~~~~~~~~~-~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
+..+++.+.+ .+.+.+.+.+ .|+. | |+|+++||.+++++|++++++|| +|||. |+||++.++...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~g~~--p-~iQ~~ai~~il~g~dvlv~apTG---------SGKTl-~~lp~l~~~~~~ 98 (1054)
T 1gku_B 32 ASLCLFPEDFLLKEFVEFFRKCVGEP--R-AIQKMWAKRILRKESFAATAPTG---------VGKTS-FGLAMSLFLALK 98 (1054)
T ss_dssp CCCSCCTTHHHHHHHHHHHHTTTCSC--C-HHHHHHHHHHHTTCCEECCCCBT---------SCSHH-HHHHHHHHHHTT
T ss_pred ccccccccccchHHHHHHHHHhcCCC--H-HHHHHHHHHHHhCCCEEEEcCCC---------CCHHH-HHHHHHHHHhhc
Confidence 3344454443 2334443333 5765 7 99999999999999999999998 89997 999999988531
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.+++|||+|||+||.|+.+.+.+++.... +....+....+|+.
T Consensus 99 ----------------------------------~~~~lil~PtreLa~Q~~~~l~~l~~~~~---i~~~~~v~~~~Gg~ 141 (1054)
T 1gku_B 99 ----------------------------------GKRCYVIFPTSLLVIQAAETIRKYAEKAG---VGTENLIGYYHGRI 141 (1054)
T ss_dssp ----------------------------------SCCEEEEESCHHHHHHHHHHHHHHHTTTC---CSGGGSEEECCSSC
T ss_pred ----------------------------------CCeEEEEeccHHHHHHHHHHHHHHHhhcC---CCccceEEEEeCCC
Confidence 36899999999999999999999875432 10001222223322
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccH--HHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTR--KSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~tr--k~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
.... ..++.+. ++|||||||++|.+++.
T Consensus 142 -----------------------------------------------~~~~~~~~~~~l~---~~~IlV~TP~~L~~~l~ 171 (1054)
T 1gku_B 142 -----------------------------------------------PKREKENFMQNLR---NFKIVITTTQFLSKHYR 171 (1054)
T ss_dssp -----------------------------------------------CSHHHHHHHHSGG---GCSEEEEEHHHHHHCST
T ss_pred -----------------------------------------------ChhhHHHHHhhcc---CCCEEEEcHHHHHHHHH
Confidence 1111 1233333 28999999999999875
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+ |+.+.+|||||||.|+. +..++..++..+...+.- ..+. ....+|+++||||.+
T Consensus 172 -------~----L~~l~~lViDEah~~l~-~~~~~~~i~~~lgf~~~~---------~~~~----~~~~~q~~l~SAT~t 226 (1054)
T 1gku_B 172 -------E----LGHFDFIFVDDVDAILK-ASKNVDKLLHLLGFHYDL---------KTKS----WVGEARGCLMVSTAT 226 (1054)
T ss_dssp -------T----SCCCSEEEESCHHHHHT-STHHHHHHHHHTTEEEET---------TTTE----EEECCSSEEEECCCC
T ss_pred -------H----hccCCEEEEeChhhhhh-ccccHHHHHHHhCcchhh---------hhhh----cccCCceEEEEecCC
Confidence 1 78999999999999986 235677777766432210 0011 123489999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecc
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSS 627 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~S 627 (754)
+. ..+...++.++. .+.+... ......|.|.+. +. . +.. .|..+.....+++||||++
T Consensus 227 ~~-~~~~~~~~~~~~-~i~v~~~-----~~~~~~i~~~~~--~~-~-------k~~-----~L~~ll~~~~~~~LVF~~t 284 (1054)
T 1gku_B 227 AK-KGKKAELFRQLL-NFDIGSS-----RITVRNVEDVAV--ND-E-------SIS-----TLSSILEKLGTGGIIYART 284 (1054)
T ss_dssp SC-CCTTHHHHHHHH-CCCCSCC-----EECCCCEEEEEE--SC-C-------CTT-----TTHHHHTTSCSCEEEEESS
T ss_pred Cc-hhHHHHHhhcce-EEEccCc-----ccCcCCceEEEe--ch-h-------HHH-----HHHHHHhhcCCCEEEEEcC
Confidence 98 644444444421 1222111 123446777666 21 1 111 2223333335789999999
Q ss_pred hhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCccccCCC-CeEEEccCC
Q 004428 628 YFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILY----TERSHFYHRYKIRGI-QNLIIYSLP 698 (754)
Q Consensus 628 y~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~----TErahffRr~dIkgV-~~VIfY~lP 698 (754)
...+.+|..+|+.. +++..+|+.+ .+++..|++|+.+|||+ |+++. ||+||++| ++||+|++|
T Consensus 285 ~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~--rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 285 GEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLV--RGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC--------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeE--eccccCCcccEEEEeCCC
Confidence 99999999999988 9999999987 37889999999999999 99999 99999995 999999999
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=343.89 Aligned_cols=348 Identities=11% Similarity=0.051 Sum_probs=242.8
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
..|..+++.+.+...+.. .++.. |||+|+++++.+++++|+++++.|| +|||.+|+++++.++..
T Consensus 162 ~~~~~~~l~~~~~~~~~~----~~~f~-ltp~Q~~AI~~i~~g~dvLV~ApTG---------SGKTlva~l~i~~~l~~- 226 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEAR----TYPFT-LDPFQDTAISCIDRGESVLVSAHTS---------AGKTVVAEYAIAQSLKN- 226 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSS----CCSSC-CCHHHHHHHHHHTTTCCEEEECCSS---------SHHHHHHHHHHHHHHHT-
T ss_pred CCcccCCCChhhhHHHHH----hCCCC-CCHHHHHHHHHHHcCCCEEEECCCC---------CChHHHHHHHHHHHHhc-
Confidence 346666666665544422 23333 7999999999999999999999998 89999999999998731
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
.++||||+|||+||.|+.+.+.++.+...
T Consensus 227 ----------------------------------g~rvlvl~PtraLa~Q~~~~l~~~~~~Vg----------------- 255 (1108)
T 3l9o_A 227 ----------------------------------KQRVIYTSPIKALSNQKYRELLAEFGDVG----------------- 255 (1108)
T ss_dssp ----------------------------------TCEEEEEESSHHHHHHHHHHHHHHTSSEE-----------------
T ss_pred ----------------------------------CCeEEEEcCcHHHHHHHHHHHHHHhCCcc-----------------
Confidence 25899999999999999999998764211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
++.|. +.+. .+++|||+||++|+.++..
T Consensus 256 ---------------------------------lltGd--------~~~~----------~~~~IlV~Tpe~L~~~L~~- 283 (1108)
T 3l9o_A 256 ---------------------------------LMTGD--------ITIN----------PDAGCLVMTTEILRSMLYR- 283 (1108)
T ss_dssp ---------------------------------EECSS--------CBCC----------CSCSEEEEEHHHHHHHHHH-
T ss_pred ---------------------------------EEeCc--------cccC----------CCCCEEEeChHHHHHHHHc-
Confidence 01110 1111 2589999999999998873
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
+..+|+.+.+|||||||+|+...+ ..+..|+.. +|.. +|+|+||||++.
T Consensus 284 ------~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~---l~~~---------------------~qvl~lSATipn 333 (1108)
T 3l9o_A 284 ------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL---LPDK---------------------VRYVFLSATIPN 333 (1108)
T ss_dssp ------CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHH---SCTT---------------------SEEEEEECSCSS
T ss_pred ------CccccccCCEEEEhhhhhccccchHHHHHHHHHh---cCCC---------------------ceEEEEcCCCCC
Confidence 345689999999999999984322 234444444 4543 899999999874
Q ss_pred --HHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE---------EeccCcccchhH------------------
Q 004428 549 --EINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE---------RFNADSIAKADD------------------ 599 (754)
Q Consensus 549 --einsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~---------r~~~~s~~~~~d------------------ 599 (754)
++..++.....++. .|...... ...+++.+. .++.........
T Consensus 334 ~~e~a~~l~~~~~~~~-~vi~~~~r-------p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (1108)
T 3l9o_A 334 AMEFAEWICKIHSQPC-HIVYTNFR-------PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 405 (1108)
T ss_dssp CHHHHHHHHHHTCSCE-EEEEECCC-------SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------
T ss_pred HHHHHHHHHhhcCCCe-EEEecCCC-------cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccc
Confidence 46666665544432 22211110 111222221 111110000000
Q ss_pred ---------------HH--HHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc------------------
Q 004428 600 ---------------AR--LEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS------------------ 644 (754)
Q Consensus 600 ---------------~R--f~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~------------------ 644 (754)
.+ ..--+..++..+......++||||++...+..+...|...++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~ 485 (1108)
T 3l9o_A 406 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIAL 485 (1108)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 00 0001113444444556679999999999999999998654333
Q ss_pred ---------------------eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCc
Q 004428 645 ---------------------FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEF 703 (754)
Q Consensus 645 ---------------------f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pef 703 (754)
++.+|+.+++.+|..+...|++|.++|||||++++ +|+||++|++||+|+.|-++.-
T Consensus 486 l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla--~GIDiP~v~~VI~~~~~~d~~~ 563 (1108)
T 3l9o_A 486 LPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS--IGLNMPAKTVVFTSVRKWDGQQ 563 (1108)
T ss_dssp HHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC--SCCCC--CEEEESCSEEESSSC
T ss_pred cchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh--cCCCCCCceEEEecCcccCccc
Confidence 68899999999999999999999999999999999 9999999999999998766664
Q ss_pred --------hhhhccccCCCC---CceEEEEechh-cHHHHHHHh
Q 004428 704 --------YPEIVNMLEGSH---NMTCTVLFSRF-DMLRLERIV 735 (754)
Q Consensus 704 --------Y~erigrt~ra~---~g~~~~L~sk~-D~~~LErIV 735 (754)
|.||+||+||.+ .|.|+.|++.. +...+.+++
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 999999999987 68899998765 444455444
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=320.16 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=65.6
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCccEEEEcccccccC
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQ------------NASFCLLGDYTEPSDISRARVWFFE-GKRKMILYTERSHFYH 682 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~------------~~~f~~Ihey~sq~~r~rar~~F~~-G~~~ILL~TErahffR 682 (754)
....++||||++......|..+|+.. |.....+|+.+++.+|.+++..|++ |+++|||+|+++. +
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~--~ 706 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD--E 706 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchh--c
Confidence 45689999999999999999999874 5566677888999999999999999 9999999999999 9
Q ss_pred ccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 683 RYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 683 r~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
|+||++|++||+|++|.+|.-|.||+|| ||...|.|+.|+++.+.
T Consensus 707 GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp ----CCCSEEEEESCCSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 9999999999999999999999999999 99988999999998765
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-30 Score=276.57 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=229.9
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|.|.|+++++.++++ +++.++.|| +|||.+++++++.++.+.
T Consensus 10 l~~~Q~~~i~~~~~~-~~ll~~~tG---------~GKT~~~~~~~~~~~~~~---------------------------- 51 (494)
T 1wp9_A 10 PRIYQEVIYAKCKET-NCLIVLPTG---------LGKTLIAMMIAEYRLTKY---------------------------- 51 (494)
T ss_dssp CCHHHHHHHHHGGGS-CEEEECCTT---------SCHHHHHHHHHHHHHHHS----------------------------
T ss_pred ccHHHHHHHHHHhhC-CEEEEcCCC---------CCHHHHHHHHHHHHHhcC----------------------------
Confidence 689999999999999 999999998 899999999999987511
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
.+++|||+|||+||.|+.+.+.++..... .++....|+.
T Consensus 52 ------~~~~liv~P~~~L~~q~~~~~~~~~~~~~-------~~v~~~~g~~---------------------------- 90 (494)
T 1wp9_A 52 ------GGKVLMLAPTKPLVLQHAESFRRLFNLPP-------EKIVALTGEK---------------------------- 90 (494)
T ss_dssp ------CSCEEEECSSHHHHHHHHHHHHHHBCSCG-------GGEEEECSCS----------------------------
T ss_pred ------CCeEEEEECCHHHHHHHHHHHHHHhCcch-------hheEEeeCCc----------------------------
Confidence 35799999999999999999999863210 0111112211
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-h
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-M 496 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-m 496 (754)
.. ....+++ ..++|||+||..|...+.. ....+..+.++||||||.+. .
T Consensus 91 -------------------~~-~~~~~~~---~~~~ivv~T~~~l~~~~~~-------~~~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 91 -------------------SP-EERSKAW---ARAKVIVATPQTIENDLLA-------GRISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp -------------------CH-HHHHHHH---HHCSEEEECHHHHHHHHHT-------TSCCTTSCSEEEEETGGGCSTT
T ss_pred -------------------ch-hhhhhhc---cCCCEEEecHHHHHHHHhc-------CCcchhhceEEEEECCcccCCC
Confidence 00 1112222 2589999999999998762 33458899999999999997 3
Q ss_pred cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC---HHHHHHHHHhhcCCCceEEEeecccC
Q 004428 497 QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN---PEINAFFNHHCANYQGKVKLACEYKG 573 (754)
Q Consensus 497 QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~---peinsL~~~~~~N~~G~Vkv~~~~~g 573 (754)
.+|..+...+.. .++ .++.|++|||.. .++..++..... ..+.+......
T Consensus 141 ~~~~~~~~~~~~---~~~---------------------~~~~l~lTaTp~~~~~~~~~l~~~l~~---~~~~~~~~~~~ 193 (494)
T 1wp9_A 141 YAYVFIAREYKR---QAK---------------------NPLVIGLTASPGSTPEKIMEVINNLGI---EHIEYRSENSP 193 (494)
T ss_dssp CHHHHHHHHHHH---HCS---------------------SCCEEEEESCSCSSHHHHHHHHHHTTC---CEEEECCTTST
T ss_pred CcHHHHHHHHHh---cCC---------------------CCeEEEEecCCCCCcHHHHHHHHhcCh---heeeccCCCcH
Confidence 344444433332 222 278999999997 346666654321 11222111100
Q ss_pred cccccccceeEEEEEeccCcccc---------------------------------------------------------
Q 004428 574 VLPKVLLNVRQIYERFNADSIAK--------------------------------------------------------- 596 (754)
Q Consensus 574 ~i~~v~~~I~Q~f~r~~~~s~~~--------------------------------------------------------- 596 (754)
.+........-.+..+..+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (494)
T 1wp9_A 194 DVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLL 273 (494)
T ss_dssp TTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHH
T ss_pred HHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHH
Confidence 00000011111111111000000
Q ss_pred ------------------------------------------------------------------hhHHHHHHHHHHHh
Q 004428 597 ------------------------------------------------------------------ADDARLEYFTKKVF 610 (754)
Q Consensus 597 ------------------------------------------------------------------~~d~Rf~yF~~~iL 610 (754)
....++..+. .+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~~l 352 (494)
T 1wp9_A 274 LYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLK-EII 352 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHH-HHH
Confidence 0011222211 122
Q ss_pred HHhh-hcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecC--------CCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 004428 611 PKIK-DSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGD--------YTEPSDISRARVWFFEGKRKMILYTERSHFY 681 (754)
Q Consensus 611 p~l~-~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihe--------y~sq~~r~rar~~F~~G~~~ILL~TErahff 681 (754)
..+. .....++||||++......|..+|+..++.+..+|| .+++.+|.+++..|++|+++|||+|+.+.
T Consensus 353 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~-- 430 (494)
T 1wp9_A 353 REQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE-- 430 (494)
T ss_dssp HHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGG--
T ss_pred HHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccc--
Confidence 2221 135689999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 682 HRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 682 Rr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
+|+||+++++||+|++|.+|..|.+|+||++|.+.|.|+.|+++.+.
T Consensus 431 ~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 431 EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTR 477 (494)
T ss_dssp GGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEecCCH
Confidence 99999999999999999999999999999999999999999998754
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=318.68 Aligned_cols=109 Identities=9% Similarity=0.072 Sum_probs=66.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCccEEEEcccccccCc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ------------NASFCLLGDYTEPSDISRARVWFFE-GKRKMILYTERSHFYHR 683 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~------------~~~f~~Ihey~sq~~r~rar~~F~~-G~~~ILL~TErahffRr 683 (754)
...++||||++......|..+|++. |..+..+|+.+++.+|.+++..|++ |+++|||+|+++. +|
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~--eG 707 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD--EG 707 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchh--cC
Confidence 4589999999999999999999987 5566667888999999999999999 9999999999999 99
Q ss_pred cccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
+||++|++||+||+|.++.-|.||+|| ||...|.|+.|+++.+.
T Consensus 708 IDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp --CCCCSEEEEESCCSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred CcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 999999999999999999999999999 99988999999987654
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=314.68 Aligned_cols=310 Identities=12% Similarity=0.076 Sum_probs=219.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 004428 235 YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVT 314 (754)
Q Consensus 235 l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~ 314 (754)
+++++.+++++.. .. ..|||+|++++|.+++++|++++++|| +|||.+|++|+|+++++.
T Consensus 155 l~~~~~~~~~l~~-----~~-~~~lpiq~~~i~~l~~g~dvlv~a~TG---------SGKT~~~~lpil~~l~~~----- 214 (618)
T 2whx_A 155 VTKSGDYVSAITQ-----AE-RIGEPDYEVDEDIFRKKRLTIMDLHPG---------AGKTKRILPSIVREALKR----- 214 (618)
T ss_dssp -------CEECBC-----CC-CCCCCCCCCCGGGGSTTCEEEECCCTT---------SSTTTTHHHHHHHHHHHT-----
T ss_pred ccchHHHHHHHhh-----cc-ccCCCccccCHHHHhcCCeEEEEcCCC---------CCHHHHHHHHHHHHHHhC-----
Confidence 5566665554433 12 348999999999999999999999998 899999999999998641
Q ss_pred cchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccC
Q 004428 315 KNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEED 394 (754)
Q Consensus 315 knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~ 394 (754)
.+++|||+|||+||.|+.+.+..+. + + |...
T Consensus 215 -----------------------------~~~vLvl~PtreLa~Qi~~~l~~~~-------v----~----~~~~----- 245 (618)
T 2whx_A 215 -----------------------------RLRTLILAPTRVVAAEMEEALRGLP-------I----R----YQTP----- 245 (618)
T ss_dssp -----------------------------TCCEEEEESSHHHHHHHHHHTTTSC-------E----E----ECCT-----
T ss_pred -----------------------------CCeEEEEcChHHHHHHHHHHhcCCc-------e----e----Eecc-----
Confidence 3689999999999999998765211 1 0 1100
Q ss_pred cccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccc
Q 004428 395 KDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKE 474 (754)
Q Consensus 395 ~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~ 474 (754)
.+.... -.+..|.++|.+.|...+-.
T Consensus 246 -----------------------------------------------~l~~~~-tp~~~i~~~t~~~l~~~l~~------ 271 (618)
T 2whx_A 246 -----------------------------------------------AVKSDH-TGREIVDLMCHATFTTRLLS------ 271 (618)
T ss_dssp -----------------------------------------------TSSCCC-CSSSCEEEEEHHHHHHHHHH------
T ss_pred -----------------------------------------------cceecc-CCCceEEEEChHHHHHHHhc------
Confidence 000000 01234555666666544431
Q ss_pred cCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHH
Q 004428 475 QDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFF 554 (754)
Q Consensus 475 rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~ 554 (754)
+ ..|+.+.++||||||+|-|.+...+..|+..+.. | .+|+|+||||+++.+..++
T Consensus 272 -~-~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~-~----------------------~~q~il~SAT~~~~~~~~~ 326 (618)
T 2whx_A 272 -S-TRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM-G----------------------EAAAIFMTATPPGSTDPFP 326 (618)
T ss_dssp -C-SSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH-T----------------------SCEEEEECSSCTTCCCSSC
T ss_pred -c-ccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc-c----------------------CccEEEEECCCchhhhhhh
Confidence 1 3589999999999999977766677777766521 1 2899999999998754332
Q ss_pred HHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHH
Q 004428 555 NHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRL 634 (754)
Q Consensus 555 ~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrl 634 (754)
. .|+ -.+.+... ++... +. .++..+.. ..+++||||+|...+.+|
T Consensus 327 ~---~~~-~~~~v~~~------------------~~~~~--------~~----~ll~~l~~-~~~~~LVF~~s~~~a~~l 371 (618)
T 2whx_A 327 Q---SNS-PIEDIERE------------------IPERS--------WN----TGFDWITD-YQGKTVWFVPSIKAGNDI 371 (618)
T ss_dssp C---CSS-CEEEEECC------------------CCSSC--------CS----SSCHHHHH-CCSCEEEECSSHHHHHHH
T ss_pred c---cCC-ceeeeccc------------------CCHHH--------HH----HHHHHHHh-CCCCEEEEECChhHHHHH
Confidence 2 121 12222111 01000 00 12222322 357999999999999999
Q ss_pred HHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeE--------------------EE
Q 004428 635 RNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNL--------------------II 694 (754)
Q Consensus 635 rn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~V--------------------If 694 (754)
...|++.++++..+|+ .+|.+++..|++|+.+||||||++. ||+||+ |++| |+
T Consensus 372 ~~~L~~~g~~v~~lhg----~~R~~~l~~F~~g~~~VLVaTdv~~--rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~ 444 (618)
T 2whx_A 372 ANCLRKSGKRVIQLSR----KTFDTEYPKTKLTDWDFVVTTDISE--MGANFR-AGRVIDPRRCLKPVILTDGPERVILA 444 (618)
T ss_dssp HHHHHHTTCCEEEECT----TTHHHHTTHHHHSCCSEEEECGGGG--TTCCCC-CSEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHcCCcEEEECh----HHHHHHHHhhcCCCcEEEEECcHHH--cCcccC-ceEEEECcceecceecccCCCceEEc
Confidence 9999999999999998 3788899999999999999999999 999996 9998 77
Q ss_pred ccCCCCCCchhhhccccCCCC--CceEEEEec---hhcH---HHHHHH
Q 004428 695 YSLPERKEFYPEIVNMLEGSH--NMTCTVLFS---RFDM---LRLERI 734 (754)
Q Consensus 695 Y~lP~~pefY~erigrt~ra~--~g~~~~L~s---k~D~---~~LErI 734 (754)
|++|.++..|.||+||+||++ .|.|++|++ ..|. ..||+.
T Consensus 445 ~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 445 GPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred ccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 888999999999999999986 789999998 5654 445543
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=299.21 Aligned_cols=338 Identities=11% Similarity=0.037 Sum_probs=239.8
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
.++|++++|++.+.+.+.+. |+.. ++|+|.++|+. +.++++++++++|| +|||.+|.+++++++.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~----g~~~-l~~~Q~~~i~~~~~~~~~~lv~apTG---------sGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR----GIKK-LNPPQTEAVKKGLLEGNRLLLTSPTG---------SGKTLIAEMGIISFLL 72 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT----SCCB-CCHHHHHHHHTTTTTTCCEEEECCTT---------SCHHHHHHHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC----CCCC-CCHHHHHHHHHHhcCCCcEEEEcCCC---------CcHHHHHHHHHHHHHH
Confidence 35799999999999888763 7765 79999999999 78999999999998 8999999999999986
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+. ..++||++|||+||.|+++.+..+.... + +.....|
T Consensus 73 ~~----------------------------------~~~il~i~P~r~La~q~~~~~~~~~~~g--~------~v~~~~G 110 (715)
T 2va8_A 73 KN----------------------------------GGKAIYVTPLRALTNEKYLTFKDWELIG--F------KVAMTSG 110 (715)
T ss_dssp HS----------------------------------CSEEEEECSCHHHHHHHHHHHGGGGGGT--C------CEEECCS
T ss_pred HC----------------------------------CCeEEEEeCcHHHHHHHHHHHHHhhcCC--C------EEEEEeC
Confidence 32 2589999999999999999996553221 0 1111122
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+.. ... +.+ ..++|||+||+.|..++.
T Consensus 111 ~~~----------------------------------------------~~~-~~~------~~~~Iiv~Tpe~l~~~~~ 137 (715)
T 2va8_A 111 DYD----------------------------------------------TDD-AWL------KNYDIIITTYEKLDSLWR 137 (715)
T ss_dssp CSS----------------------------------------------SCC-GGG------GGCSEEEECHHHHHHHHH
T ss_pred CCC----------------------------------------------Cch-hhc------CCCCEEEEcHHHHHHHHh
Confidence 110 000 111 258999999999999886
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. +..+|+.+.++||||||.+.. +....+..++..+. ..|.|++|||+
T Consensus 138 ~-------~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------------~~~ii~lSATl 185 (715)
T 2va8_A 138 H-------RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------------RRNLLALSATI 185 (715)
T ss_dssp H-------CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------TSEEEEEESCC
T ss_pred C-------ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------cCcEEEEcCCC
Confidence 2 345699999999999999874 33345666665542 27999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE-----------EeccCc--ccchhHHHHHHHHHHHhHHh
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE-----------RFNADS--IAKADDARLEYFTKKVFPKI 613 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~-----------r~~~~s--~~~~~d~Rf~yF~~~iLp~l 613 (754)
+. ...+. .++.. .+ +..... ...+.+.+. .+.... .....+..+. .+...+
T Consensus 186 ~n-~~~~~-~~l~~---~~-~~~~~r------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 249 (715)
T 2va8_A 186 SN-YKQIA-KWLGA---EP-VATNWR------PVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIA----YTLDSL 249 (715)
T ss_dssp TT-HHHHH-HHHTC---EE-EECCCC------SSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHH----HHHHHH
T ss_pred CC-HHHHH-HHhCC---Cc-cCCCCC------CCCceEEEEecCCcccceeeecCcchhhhcccchHHHH----HHHHHH
Confidence 73 23333 33321 11 111100 001111111 111100 0000122222 122222
Q ss_pred hhcCCCcEEEEecchhcHHHHHHHHHhCC------------------------------------CceEeecCCCCHHHH
Q 004428 614 KDSIQGGIMLFLSSYFEFVRLRNFLKSQN------------------------------------ASFCLLGDYTEPSDI 657 (754)
Q Consensus 614 ~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------------------------------~~f~~Ihey~sq~~r 657 (754)
...+++||||++..+...+...|.+.. ..+..+|+.+++.+|
T Consensus 250 --~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 250 --SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp --TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred --hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 245899999999999999999998642 248889999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE----cc-------CCCCCCchhhhccccCCCC---CceEEEEe
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII----YS-------LPERKEFYPEIVNMLEGSH---NMTCTVLF 723 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf----Y~-------lP~~pefY~erigrt~ra~---~g~~~~L~ 723 (754)
.++...|.+|.++|||+|+.+. +|++|+++..||+ |+ .|.++..|.+|+||+||.+ .|.|+.|+
T Consensus 328 ~~v~~~f~~g~~~vlvaT~~l~--~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 405 (715)
T 2va8_A 328 DLIEEGFRQRKIKVIVATPTLA--AGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVV 405 (715)
T ss_dssp HHHHHHHHTTCSCEEEECGGGG--GSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEEC
T ss_pred HHHHHHHHcCCCeEEEEChHHh--cccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 9999999999999999999999 9999999999999 99 8999999999999999987 68999999
Q ss_pred chhc
Q 004428 724 SRFD 727 (754)
Q Consensus 724 sk~D 727 (754)
+..+
T Consensus 406 ~~~~ 409 (715)
T 2va8_A 406 RDKE 409 (715)
T ss_dssp SCGG
T ss_pred CCch
Confidence 8776
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=306.92 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=91.6
Q ss_pred CCcEEEEecchhcHHHHHHHHHhC------CCceEeecCC--------CCHHHHHHHHHHHhcCCccEEEEcccccccCc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQ------NASFCLLGDY--------TEPSDISRARVWFFEGKRKMILYTERSHFYHR 683 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~------~~~f~~Ihey--------~sq~~r~rar~~F~~G~~~ILL~TErahffRr 683 (754)
..++||||++......|..+|+.. |+.+..+|+. +++.+|.+++..|++|+++|||+|+.+. +|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~--~G 477 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE--EG 477 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCC--TT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccc--cC
Confidence 689999999999999999999987 8999999999 9999999999999999999999999999 99
Q ss_pred cccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhc
Q 004428 684 YKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 684 ~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D 727 (754)
+||++|++||+||+|.++.-|.||+||.++. |.+++||+..+
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~--g~~~~l~~~~~ 519 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARAD--ESTYVLVAHSG 519 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSS--SCEEEEEEESS
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCC--CceEEEEEeCC
Confidence 9999999999999999999999999995443 46666665443
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=298.78 Aligned_cols=339 Identities=12% Similarity=0.077 Sum_probs=246.3
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhh-hhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSL-CNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~-i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
++|.+++|++.+.+.+.+. |+.. ++|+|.++++. +.++++++++++|| +|||.+|.+++++++.+
T Consensus 1 ~~f~~l~l~~~~~~~l~~~----g~~~-l~~~Q~~~i~~~~~~~~~~lv~apTG---------sGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKER----GIES-FYPPQAEALKSGILEGKNALISIPTA---------SGKTLIAEIAMVHRILT 66 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHT----TCCB-CCHHHHHHHTTTGGGTCEEEEECCGG---------GCHHHHHHHHHHHHHHH
T ss_pred CcHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhcCCCcEEEEcCCc---------cHHHHHHHHHHHHHHHh
Confidence 3589999999999888774 7765 79999999998 88999999999998 89999999999999863
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. .+++||++|||+||.|+++.+.++.+.. + +.....|+
T Consensus 67 ~----------------------------------~~~~l~i~P~raLa~q~~~~~~~l~~~g--~------~v~~~~G~ 104 (720)
T 2zj8_A 67 Q----------------------------------GGKAVYIVPLKALAEEKFQEFQDWEKIG--L------RVAMATGD 104 (720)
T ss_dssp H----------------------------------CSEEEEECSSGGGHHHHHHHTGGGGGGT--C------CEEEECSC
T ss_pred C----------------------------------CCEEEEEcCcHHHHHHHHHHHHHHHhcC--C------EEEEecCC
Confidence 2 2589999999999999999996654321 0 11112221
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ....+.+ ..++|||+||++|..++..
T Consensus 105 ~-----------------------------------------------~~~~~~~------~~~~Iiv~Tpe~l~~~~~~ 131 (720)
T 2zj8_A 105 Y-----------------------------------------------DSKDEWL------GKYDIIIATAEKFDSLLRH 131 (720)
T ss_dssp S-----------------------------------------------SCCCGGG------GGCSEEEECHHHHHHHHHH
T ss_pred C-----------------------------------------------Ccccccc------CCCCEEEECHHHHHHHHHc
Confidence 1 1111111 2589999999999988762
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+..+|+.+.++||||||.|.. +...++..++..+.. -.|.|++|||++
T Consensus 132 -------~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~------------------------~~~ii~lSATl~ 180 (720)
T 2zj8_A 132 -------GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG------------------------KAQIIGLSATIG 180 (720)
T ss_dssp -------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT------------------------TBEEEEEECCCS
T ss_pred -------ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc------------------------CCeEEEEcCCcC
Confidence 345689999999999999984 556677777766631 279999999997
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE-----EeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEE
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE-----RFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIM 622 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~-----r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tL 622 (754)
. ...+. .++.. .+ +..... ...+.+.+. .+..... ...+.... ++..+.. ..+++|
T Consensus 181 n-~~~~~-~~l~~---~~-~~~~~r------p~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~-~~~~~L 241 (720)
T 2zj8_A 181 N-PEELA-EWLNA---EL-IVSDWR------PVKLRRGVFYQGFVTWEDGSI-DRFSSWEE-----LVYDAIR-KKKGAL 241 (720)
T ss_dssp C-HHHHH-HHTTE---EE-EECCCC------SSEEEEEEEETTEEEETTSCE-EECSSTTH-----HHHHHHH-TTCCEE
T ss_pred C-HHHHH-HHhCC---cc-cCCCCC------CCcceEEEEeCCeeeccccch-hhhhHHHH-----HHHHHHh-CCCCEE
Confidence 4 23333 23321 11 111100 011221111 0110000 00111121 1222211 358999
Q ss_pred EEecchhcHHHHHHHHHhC------------------C---------------CceEeecCCCCHHHHHHHHHHHhcCCc
Q 004428 623 LFLSSYFEFVRLRNFLKSQ------------------N---------------ASFCLLGDYTEPSDISRARVWFFEGKR 669 (754)
Q Consensus 623 IFv~Sy~d~vrlrn~Lk~~------------------~---------------~~f~~Ihey~sq~~r~rar~~F~~G~~ 669 (754)
|||++..++..+...|.+. + ..+..+|+.+++.+|.++...|++|.+
T Consensus 242 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 321 (720)
T 2zj8_A 242 IFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGII 321 (720)
T ss_dssp EECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred EEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCC
Confidence 9999999999999999753 1 248899999999999999999999999
Q ss_pred cEEEEcccccccCccccCCCCeEEE----cc----CCCCCCchhhhccccCCCC---CceEEEEechhcHH
Q 004428 670 KMILYTERSHFYHRYKIRGIQNLII----YS----LPERKEFYPEIVNMLEGSH---NMTCTVLFSRFDML 729 (754)
Q Consensus 670 ~ILL~TErahffRr~dIkgV~~VIf----Y~----lP~~pefY~erigrt~ra~---~g~~~~L~sk~D~~ 729 (754)
+|||+|+.+. +|++|+++..||+ |+ .|.++..|.+|+||+||.+ .|.|+.|++..+..
T Consensus 322 ~vlvaT~~l~--~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 322 KAVVATPTLS--AGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp CEEEECSTTG--GGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred eEEEECcHhh--ccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999999 9999999999999 77 6899999999999999987 58899999988743
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=301.58 Aligned_cols=342 Identities=10% Similarity=0.076 Sum_probs=241.1
Q ss_pred CcCCCC--CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 231 LYSDYG--LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 231 ~f~~l~--L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
+|++++ |++.+.+.+.+ .|+.. ++|+|+++++.+.++++++++++|| +|||.+|.+++++++.+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~----~g~~~-l~~~Q~~~i~~i~~~~~~lv~apTG---------sGKT~~~~l~il~~~~~ 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE----EGIEE-LFPPQAEAVEKVFSGKNLLLAMPTA---------AGKTLLAEMAMVREAIK 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC----C---C-CCCCCHHHHHHHTTCSCEEEECSSH---------HHHHHHHHHHHHHHHHT
T ss_pred chhhhhhccCHHHHHHHHh----CCCCC-CCHHHHHHHHHHhCCCcEEEEcCCc---------cHHHHHHHHHHHHHHHh
Confidence 467776 77777777655 47765 7999999999999999999999998 99999999999998752
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+++||++|||+||.|+++.+.++....- +.....|+
T Consensus 68 -----------------------------------~~~~l~i~P~r~La~q~~~~~~~~~~~g~--------~v~~~~G~ 104 (702)
T 2p6r_A 68 -----------------------------------GGKSLYVVPLRALAGEKYESFKKWEKIGL--------RIGISTGD 104 (702)
T ss_dssp -----------------------------------TCCEEEEESSHHHHHHHHHHHTTTTTTTC--------CEEEECSS
T ss_pred -----------------------------------CCcEEEEeCcHHHHHHHHHHHHHHHhcCC--------EEEEEeCC
Confidence 24799999999999999999965543211 11112221
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. ...+. ...++|||+||++|..++..
T Consensus 105 ~~-----------------------------------------------~~~~~------~~~~~Iiv~Tpe~l~~~l~~ 131 (702)
T 2p6r_A 105 YE-----------------------------------------------SRDEH------LGDCDIIVTTSEKADSLIRN 131 (702)
T ss_dssp CB-----------------------------------------------CCSSC------STTCSEEEEEHHHHHHHHHT
T ss_pred CC-----------------------------------------------cchhh------ccCCCEEEECHHHHHHHHHc
Confidence 10 00000 12589999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
+..+|+.+.++||||||.|.. +...++..++..+..++. ..|.|++|||++
T Consensus 132 -------~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~---------------------~~~ii~lSATl~ 183 (702)
T 2p6r_A 132 -------RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK---------------------ALRVIGLSATAP 183 (702)
T ss_dssp -------TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT---------------------TCEEEEEECCCT
T ss_pred -------ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc---------------------CceEEEECCCcC
Confidence 345699999999999999884 444566666666543222 279999999998
Q ss_pred HHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE------EeccCcccchhHHHHHHHHHHHhHHhhhcCCCcE
Q 004428 548 PEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE------RFNADSIAKADDARLEYFTKKVFPKIKDSIQGGI 621 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~------r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~t 621 (754)
. ...+.. ++.. .+ +..... ...+.+.+. ..+........-.... ++..+. ...+++
T Consensus 184 n-~~~~~~-~l~~---~~-~~~~~r------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~ 245 (702)
T 2p6r_A 184 N-VTEIAE-WLDA---DY-YVSDWR------PVPLVEGVLCEGTLELFDGAFSTSRRVKFEE-----LVEECV-AENGGV 245 (702)
T ss_dssp T-HHHHHH-HTTC---EE-EECCCC------SSCEEEEEECSSEEEEEETTEEEEEECCHHH-----HHHHHH-HTTCCE
T ss_pred C-HHHHHH-HhCC---Cc-ccCCCC------CccceEEEeeCCeeeccCcchhhhhhhhHHH-----HHHHHH-hcCCCE
Confidence 4 344443 3321 11 111100 011222111 1111000000000111 222222 245899
Q ss_pred EEEecchhcHHHHHHHHHhC------------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccE
Q 004428 622 MLFLSSYFEFVRLRNFLKSQ------------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKM 671 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~------------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~I 671 (754)
||||++..+...+...|.+. +..+..+|+.+++.+|.++...|++|+++|
T Consensus 246 LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 325 (702)
T 2p6r_A 246 LVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 325 (702)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCE
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999999999999998753 135778999999999999999999999999
Q ss_pred EEEcccccccCccccCCCCeEEE----cc---CCCCCCchhhhccccCCCC---CceEEEEechhcHHH
Q 004428 672 ILYTERSHFYHRYKIRGIQNLII----YS---LPERKEFYPEIVNMLEGSH---NMTCTVLFSRFDMLR 730 (754)
Q Consensus 672 LL~TErahffRr~dIkgV~~VIf----Y~---lP~~pefY~erigrt~ra~---~g~~~~L~sk~D~~~ 730 (754)
||+|+.+. +|++|+++..||+ |+ .|.++..|.+|+||+||.+ .|.|+.|++..+...
T Consensus 326 lvaT~~l~--~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 326 VVATPTLA--AGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp EEECSTTT--SSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred EEECcHHh--ccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999999 9999999999999 76 7999999999999999987 689999999887543
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=297.91 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=205.1
Q ss_pred CCCCCCCHHHHHHhhhhhCCccE-EEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNSYRDI-LHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~y~Dv-l~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
|+.+ |||+|+ +||.+++++|+ +++++|| +|||.+|++|+|.++++.
T Consensus 1 G~~q-~~~iq~-~i~~~l~~~~~~lv~a~TG---------sGKT~~~~~~~l~~~~~~---------------------- 47 (451)
T 2jlq_A 1 GSAM-GEPDYE-VDEDIFRKKRLTIMDLHPG---------AGKTKRILPSIVREALLR---------------------- 47 (451)
T ss_dssp CCCC-CSCCCC-CCGGGGSTTCEEEECCCTT---------SSCCTTHHHHHHHHHHHT----------------------
T ss_pred CCCC-CCCcHH-HHHHHHhcCCeEEEECCCC---------CCHhhHHHHHHHHHHHhc----------------------
Confidence 4444 899986 79999999998 8899998 899999999999998632
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.+++|||+|||+||.|+.+.+..+. + .|.....
T Consensus 48 ------------~~~~lvl~Ptr~La~Q~~~~l~g~~-------v--------~~~~~~~-------------------- 80 (451)
T 2jlq_A 48 ------------RLRTLILAPTRVVAAEMEEALRGLP-------I--------RYQTPAV-------------------- 80 (451)
T ss_dssp ------------TCCEEEEESSHHHHHHHHHHTTTSC-------E--------EECCTTC--------------------
T ss_pred ------------CCcEEEECCCHHHHHHHHHHhcCce-------e--------eeeeccc--------------------
Confidence 3689999999999999998774221 1 0110000
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+ .+ ...+..|.|+||+.|...+.. ...|+.+.++|||||
T Consensus 81 -~--~~------------------------------~~~~~~i~~~t~~~l~~~l~~--------~~~l~~~~~iViDEa 119 (451)
T 2jlq_A 81 -K--SD------------------------------HTGREIVDLMCHATFTTRLLS--------STRVPNYNLIVMDEA 119 (451)
T ss_dssp -S--CC------------------------------CCSSCCEEEEEHHHHHHHHHH--------CSCCCCCSEEEEETT
T ss_pred -c--cc------------------------------CCCCceEEEEChHHHHHHhhC--------cccccCCCEEEEeCC
Confidence 0 00 013568999999998877652 235899999999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
|.|-+. +..+..++......| -+|+|+||||+++.+..++ ..++ ..+.+....
T Consensus 120 h~~~~~-~~~~~~~~~~~~~~~----------------------~~~~i~~SAT~~~~~~~~~---~~~~-~~~~~~~~~ 172 (451)
T 2jlq_A 120 HFTDPC-SVAARGYISTRVEMG----------------------EAAAIFMTATPPGSTDPFP---QSNS-PIEDIEREI 172 (451)
T ss_dssp TCCSHH-HHHHHHHHHHHHHTT----------------------SCEEEEECSSCTTCCCSSC---CCSS-CEEEEECCC
T ss_pred ccCCcc-hHHHHHHHHHhhcCC----------------------CceEEEEccCCCccchhhh---cCCC-ceEecCccC
Confidence 987322 222222222211112 2899999999987653321 1222 122221000
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY 651 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey 651 (754)
+ .+.| . .++..+. ...+++||||++..++..|...|++.++.+..+|+.
T Consensus 173 --------p--~~~~---~-----------------~~~~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~ 221 (451)
T 2jlq_A 173 --------P--ERSW---N-----------------TGFDWIT-DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 221 (451)
T ss_dssp --------C--SSCC---S-----------------SSCHHHH-HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred --------C--chhh---H-----------------HHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHH
Confidence 0 0000 0 0011111 235799999999999999999999999999999996
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc--------------------CCCCCCchhhhcccc
Q 004428 652 TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS--------------------LPERKEFYPEIVNML 711 (754)
Q Consensus 652 ~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~--------------------lP~~pefY~erigrt 711 (754)
+. .+++..|++|+.+|||+|+++. ||+||++ .+||+|+ +|.++..|.||+||+
T Consensus 222 ~~----~~~~~~f~~g~~~vLVaT~v~~--~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRa 294 (451)
T 2jlq_A 222 TF----DTEYPKTKLTDWDFVVTTDISE--MGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRI 294 (451)
T ss_dssp TH----HHHGGGGGSSCCSEEEECGGGG--SSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTS
T ss_pred HH----HHHHHhhccCCceEEEECCHHH--hCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhcccc
Confidence 54 4688999999999999999999 9999999 9999999 999999999999999
Q ss_pred CCCC--CceEEEEec
Q 004428 712 EGSH--NMTCTVLFS 724 (754)
Q Consensus 712 ~ra~--~g~~~~L~s 724 (754)
||.+ .|.|+.++.
T Consensus 295 GR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 295 GRNPAQEDDQYVFSG 309 (451)
T ss_dssp SCCTTCCCEEEEECS
T ss_pred CCCCCCCccEEEEeC
Confidence 9988 567766654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=297.86 Aligned_cols=339 Identities=17% Similarity=0.146 Sum_probs=242.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhC-CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNS-YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~-y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
++..|.++++++.+.+.+... + .+|+++|++.|+.++. +++++++++|| +|||. +||++ +
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r----~--~lP~~~q~~~i~~~l~~~~~vii~gpTG---------SGKTt--llp~l--l 130 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIR----R--ELPVHAQRDEFLKLYQNNQIMVFVGETG---------SGKTT--QIPQF--V 130 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHH----T--TSGGGGGHHHHHHHHHHCSEEEEECCTT---------SSHHH--HHHHH--H
T ss_pred CCCCccccCCCHHHHHHHHHh----h--cCChHHHHHHHHHHHhCCCeEEEECCCC---------CCHHH--HHHHH--H
Confidence 457799999999999998875 3 4699999999988875 56899999998 88998 56766 2
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
+.... ..| ..+++||++|||+||.|+.+.+.+..... + ...+
T Consensus 131 ~~~~~---------------------------~~~-~g~~ilvl~P~r~La~q~~~~l~~~~~~~----v------~~~v 172 (773)
T 2xau_A 131 LFDEM---------------------------PHL-ENTQVACTQPRRVAAMSVAQRVAEEMDVK----L------GEEV 172 (773)
T ss_dssp HHHHC---------------------------GGG-GTCEEEEEESCHHHHHHHHHHHHHHTTCC----B------TTTE
T ss_pred HHhcc---------------------------ccC-CCceEEecCchHHHHHHHHHHHHHHhCCc----h------hhee
Confidence 21100 011 13679999999999999998776543211 0 0111
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|.. +.+.... -...+|+|+|||.|...+
T Consensus 173 G~~----------------------------------------------i~~~~~~------~~~~~I~v~T~G~l~r~l 200 (773)
T 2xau_A 173 GYS----------------------------------------------IRFENKT------SNKTILKYMTDGMLLREA 200 (773)
T ss_dssp EEE----------------------------------------------ETTEEEC------CTTCSEEEEEHHHHHHHH
T ss_pred cce----------------------------------------------ecccccc------CCCCCEEEECHHHHHHHH
Confidence 100 1111000 035899999999999876
Q ss_pred hhhhcccccCcccCCceeEEEEecchh-hhhcCchHHHHHHHHhc-cCCCCCCCCchhhhhhhhcccCCCccccEEEEcC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADI-ILMQNWSWLIEVVEQLN-RIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSY 544 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~-mLmQNw~hv~~Il~~Ln-~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSA 544 (754)
-. + ..|+.+.+|||||||. ++.. +.+..+++.+. ..| -.|+|++||
T Consensus 201 ~~-------~-~~l~~~~~lIlDEah~R~ld~--d~~~~~l~~l~~~~~----------------------~~~iIl~SA 248 (773)
T 2xau_A 201 ME-------D-HDLSRYSCIILDEAHERTLAT--DILMGLLKQVVKRRP----------------------DLKIIIMSA 248 (773)
T ss_dssp HH-------S-TTCTTEEEEEECSGGGCCHHH--HHHHHHHHHHHHHCT----------------------TCEEEEEES
T ss_pred hh-------C-ccccCCCEEEecCccccccch--HHHHHHHHHHHHhCC----------------------CceEEEEec
Confidence 52 2 3599999999999995 6632 22233332221 112 279999999
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEE
Q 004428 545 HPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLF 624 (754)
Q Consensus 545 t~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIF 624 (754)
|++++ .+..++.+.+ .+.+ .|. ...|.+.|....... ...-.+..++..+.....+++|||
T Consensus 249 T~~~~---~l~~~~~~~~-vi~v----~gr----~~pv~~~~~~~~~~~-------~~~~~l~~l~~~~~~~~~g~iLVF 309 (773)
T 2xau_A 249 TLDAE---KFQRYFNDAP-LLAV----PGR----TYPVELYYTPEFQRD-------YLDSAIRTVLQIHATEEAGDILLF 309 (773)
T ss_dssp CSCCH---HHHHHTTSCC-EEEC----CCC----CCCEEEECCSSCCSC-------HHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred cccHH---HHHHHhcCCC-cccc----cCc----ccceEEEEecCCchh-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99864 2345665532 2222 121 124666554432211 111112233333333457899999
Q ss_pred ecchhcHHHHHHHHHh-----------CCCceEeecCCCCHHHHHHHHHHHh-----cCCccEEEEcccccccCccccCC
Q 004428 625 LSSYFEFVRLRNFLKS-----------QNASFCLLGDYTEPSDISRARVWFF-----EGKRKMILYTERSHFYHRYKIRG 688 (754)
Q Consensus 625 v~Sy~d~vrlrn~Lk~-----------~~~~f~~Ihey~sq~~r~rar~~F~-----~G~~~ILL~TErahffRr~dIkg 688 (754)
|++..+..++...|.+ .++.+..+|+.+++.+|.++...|. .|+.+|||||++|. +|+||++
T Consensus 310 ~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae--~GidIp~ 387 (773)
T 2xau_A 310 LTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAE--TSLTIDG 387 (773)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHH--HTCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHH--hCcCcCC
Confidence 9999999999999985 6888999999999999999999999 99999999999999 9999999
Q ss_pred CCeEEEccC------------------CCCCCchhhhccccCCCCCceEEEEechhcH
Q 004428 689 IQNLIIYSL------------------PERKEFYPEIVNMLEGSHNMTCTVLFSRFDM 728 (754)
Q Consensus 689 V~~VIfY~l------------------P~~pefY~erigrt~ra~~g~~~~L~sk~D~ 728 (754)
|.+||+|++ |.+...|.||+||+||...|.|+.||++.+.
T Consensus 388 v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHH
T ss_pred eEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHh
Confidence 999999888 8899999999999999988999999998876
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=298.94 Aligned_cols=325 Identities=11% Similarity=0.063 Sum_probs=233.2
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|+|+++++.+.++++++++++|| +|||.+|.++++..+.
T Consensus 87 L~~~Q~eai~~l~~g~~vLV~apTG---------SGKTlva~lai~~~l~------------------------------ 127 (1010)
T 2xgj_A 87 LDPFQDTAISCIDRGESVLVSAHTS---------AGKTVVAEYAIAQSLK------------------------------ 127 (1010)
T ss_dssp CCHHHHHHHHHHHHTCEEEEECCTT---------SCHHHHHHHHHHHHHH------------------------------
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCC---------CChHHHHHHHHHHHhc------------------------------
Confidence 7999999999999999999999998 8999999999988762
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
. .++|||++|||+||.|+...|.++.+...
T Consensus 128 --~---g~rvL~l~PtkaLa~Q~~~~l~~~~~~vg--------------------------------------------- 157 (1010)
T 2xgj_A 128 --N---KQRVIYTSPIKALSNQKYRELLAEFGDVG--------------------------------------------- 157 (1010)
T ss_dssp --T---TCEEEEEESSHHHHHHHHHHHHHHHSCEE---------------------------------------------
T ss_pred --c---CCeEEEECChHHHHHHHHHHHHHHhCCEE---------------------------------------------
Confidence 1 25899999999999999999998754110
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
++.|+ .... ..++|||+||.+|+.++.. +..+|+.+.++||||||.|...
T Consensus 158 -----lltGd--------~~~~----------~~~~IvV~Tpe~L~~~L~~-------~~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 158 -----LMTGD--------ITIN----------PDAGCLVMTTEILRSMLYR-------GSEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp -----EECSS--------CEEC----------TTCSEEEEEHHHHHHHHHH-------TCTTGGGEEEEEEETGGGGGCT
T ss_pred -----EEeCC--------CccC----------CCCCEEEEcHHHHHHHHHc-------CcchhhcCCEEEEechhhhccc
Confidence 11111 1111 2479999999999988862 4567999999999999999843
Q ss_pred Cch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH--HHHHHHHhhcCCCceEEEeecccCc
Q 004428 498 NWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE--INAFFNHHCANYQGKVKLACEYKGV 574 (754)
Q Consensus 498 Nw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe--insL~~~~~~N~~G~Vkv~~~~~g~ 574 (754)
.+. .+..++.. +|.. .|+|++|||++.. +...+.....++ ..+.....
T Consensus 208 ~rg~~~e~il~~---l~~~---------------------~~il~LSATi~n~~e~a~~l~~~~~~~-~~vi~~~~---- 258 (1010)
T 2xgj_A 208 ERGVVWEETIIL---LPDK---------------------VRYVFLSATIPNAMEFAEWICKIHSQP-CHIVYTNF---- 258 (1010)
T ss_dssp TTHHHHHHHHHH---SCTT---------------------CEEEEEECCCTTHHHHHHHHHHHHTSC-EEEEEECC----
T ss_pred chhHHHHHHHHh---cCCC---------------------CeEEEEcCCCCCHHHHHHHHHhhcCCC-eEEEecCC----
Confidence 222 23344433 3543 7999999999753 333333333322 12222111
Q ss_pred ccccccceeEEEEE---------eccCcccchh----------------------HH------HH-------HHHHHHHh
Q 004428 575 LPKVLLNVRQIYER---------FNADSIAKAD----------------------DA------RL-------EYFTKKVF 610 (754)
Q Consensus 575 i~~v~~~I~Q~f~r---------~~~~s~~~~~----------------------d~------Rf-------~yF~~~iL 610 (754)
-...+.+.+.. ++........ .. +- .--+..++
T Consensus 259 ---rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~ 335 (1010)
T 2xgj_A 259 ---RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIV 335 (1010)
T ss_dssp ---CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHH
T ss_pred ---CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHH
Confidence 01224443332 1110000000 00 00 00112244
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc---------------------------------------eEeecCC
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS---------------------------------------FCLLGDY 651 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~---------------------------------------f~~Ihey 651 (754)
..+......++||||+|...+..+...|...++. ++.+|+.
T Consensus 336 ~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hgg 415 (1010)
T 2xgj_A 336 KMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 415 (1010)
T ss_dssp HHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTT
T ss_pred HHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCC
Confidence 4444445668999999999999999999876553 6779999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE----ccC----CCCCCchhhhccccCCCC---CceEE
Q 004428 652 TEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII----YSL----PERKEFYPEIVNMLEGSH---NMTCT 720 (754)
Q Consensus 652 ~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf----Y~l----P~~pefY~erigrt~ra~---~g~~~ 720 (754)
+++.+|..+...|++|.++|||||+.++ +|+||+++..||+ |++ |.++..|.||+||+||.+ .|.|+
T Consensus 416 l~~~eR~~ve~~F~~G~ikVLVAT~~la--~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi 493 (1010)
T 2xgj_A 416 LLPILKEVIEILFQEGFLKVLFATETFS--IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 493 (1010)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEEEGGGG--GSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEehHhh--ccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEE
Confidence 9999999999999999999999999999 9999999999999 999 899999999999999987 49999
Q ss_pred EEechh-cHHHHHHHh
Q 004428 721 VLFSRF-DMLRLERIV 735 (754)
Q Consensus 721 ~L~sk~-D~~~LErIV 735 (754)
.|++.. +...+.+++
T Consensus 494 ~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 494 MMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp EEECSCCCHHHHHHHH
T ss_pred EEECCCCCHHHHHHHH
Confidence 999865 555566554
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-32 Score=313.08 Aligned_cols=287 Identities=11% Similarity=0.058 Sum_probs=198.4
Q ss_pred CCCHHHH-----HHhhhhh------CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcc
Q 004428 257 FHSSKQR-----SFFSLCN------SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKV 325 (754)
Q Consensus 257 ~pTpiQ~-----~~ip~i~------~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~ 325 (754)
.|||||+ ++||.++ +++|++.+++|| +|||.+|++++|+++.+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTG---------SGKTl~~ll~il~~l~~~---------------- 269 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPG---------AGKTRRILPQIIKDAIQK---------------- 269 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTT---------TTTTTTHHHHHHHHHHHT----------------
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCC---------CCHHHHHHHHHHHHHHhC----------------
Confidence 3899999 9999998 999999999998 899999999999998632
Q ss_pred ccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhccc
Q 004428 326 SAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIR 405 (754)
Q Consensus 326 ~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~ 405 (754)
.+++|||+|||+||.|+.+.+..+.-. |...
T Consensus 270 ------------------~~~~lilaPTr~La~Q~~~~l~~~~i~---------------~~~~---------------- 300 (673)
T 2wv9_A 270 ------------------RLRTAVLAPTRVVAAEMAEALRGLPVR---------------YLTP---------------- 300 (673)
T ss_dssp ------------------TCCEEEEESSHHHHHHHHHHTTTSCCE---------------ECCC----------------
T ss_pred ------------------CCcEEEEccHHHHHHHHHHHHhcCCee---------------eecc----------------
Confidence 368999999999999999877644210 0000
Q ss_pred ccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccc-ccCcccCCcee
Q 004428 406 GTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENK-EQDVDYLSSIE 484 (754)
Q Consensus 406 n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k-~rd~dfLSSIE 484 (754)
.++ .|+||++|.+++....... -.....|+.+.
T Consensus 301 ------------------------------------~l~----------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~ 334 (673)
T 2wv9_A 301 ------------------------------------AVQ----------REHSGNEIVDVMCHATLTHRLMSPLRVPNYN 334 (673)
T ss_dssp -------------------------------------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCS
T ss_pred ------------------------------------ccc----------ccCCHHHHHHHHHhhhhHHHHhcccccccce
Confidence 000 0445554443332100000 00112589999
Q ss_pred EEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCce
Q 004428 485 VLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGK 564 (754)
Q Consensus 485 iLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~ 564 (754)
+|||||||+|-......+..+...+. +. .+|+|+||||+++.+..+... +. .
T Consensus 335 lvViDEaH~~~~~~~~~~~~l~~~~~--~~---------------------~~~vl~~SAT~~~~i~~~~~~---~~--~ 386 (673)
T 2wv9_A 335 LFVMDEAHFTDPASIAARGYIATRVE--AG---------------------EAAAIFMTATPPGTSDPFPDT---NS--P 386 (673)
T ss_dssp EEEEESTTCCCHHHHHHHHHHHHHHH--TT---------------------SCEEEEECSSCTTCCCSSCCC---SS--C
T ss_pred EEEEeCCcccCccHHHHHHHHHHhcc--cc---------------------CCcEEEEcCCCChhhhhhccc---CC--c
Confidence 99999999982211111222222221 11 389999999999775432211 11 1
Q ss_pred EEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCc
Q 004428 565 VKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNAS 644 (754)
Q Consensus 565 Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~ 644 (754)
+. .+...+..... . .++..+.. ..+++|||||+..+...|...|++.++.
T Consensus 387 i~-----------------~v~~~~~~~~~----~--------~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~ 436 (673)
T 2wv9_A 387 VH-----------------DVSSEIPDRAW----S--------SGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKR 436 (673)
T ss_dssp EE-----------------EEECCCCSSCC----S--------SCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCC
T ss_pred eE-----------------EEeeecCHHHH----H--------HHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCe
Confidence 11 11111111111 0 12222222 4679999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE--------------------ccCCCCCCch
Q 004428 645 FCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII--------------------YSLPERKEFY 704 (754)
Q Consensus 645 f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf--------------------Y~lP~~pefY 704 (754)
+..+|+ ++|.+++..|++|+++|||+|+++. +|+||+ |.+||+ |++|.++..|
T Consensus 437 v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e--~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y 509 (673)
T 2wv9_A 437 VIQLNR----KSYDTEYPKCKNGDWDFVITTDISE--MGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASA 509 (673)
T ss_dssp EEEECS----SSHHHHGGGGGTCCCSEEEECGGGG--TTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHH
T ss_pred EEEeCh----HHHHHHHHHHHCCCceEEEECchhh--cceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHH
Confidence 999999 4788899999999999999999999 999999 999998 6799999999
Q ss_pred hhhccccCCC-C-CceEEEEe---chhcH
Q 004428 705 PEIVNMLEGS-H-NMTCTVLF---SRFDM 728 (754)
Q Consensus 705 ~erigrt~ra-~-~g~~~~L~---sk~D~ 728 (754)
.||+||+||. + .|.|++|+ +..|.
T Consensus 510 ~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~ 538 (673)
T 2wv9_A 510 AQRRGRVGRNPSQIGDEYHYGGGTSEDDT 538 (673)
T ss_dssp HHHHTTSSCCSSCCCEEEEECSCCCCCCT
T ss_pred HHHhhccCCCCCCCCEEEEEEecCChhHH
Confidence 9999999998 4 68999996 45564
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-31 Score=293.00 Aligned_cols=279 Identities=14% Similarity=0.106 Sum_probs=188.3
Q ss_pred hhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceE
Q 004428 268 LCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKV 347 (754)
Q Consensus 268 ~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkV 347 (754)
.+++++|++.+++|| +|||.+|++++++++.+. .+++
T Consensus 4 ~l~~g~~vlv~a~TG---------SGKT~~~l~~~l~~~~~~----------------------------------~~~~ 40 (440)
T 1yks_A 4 MLKKGMTTVLDFHPG---------AGKTRRFLPQILAECARR----------------------------------RLRT 40 (440)
T ss_dssp TTSTTCEEEECCCTT---------SSTTTTHHHHHHHHHHHT----------------------------------TCCE
T ss_pred HhhCCCCEEEEcCCC---------CCHHHHHHHHHHHHHHhc----------------------------------CCeE
Confidence 467899999999998 899999999999998632 3689
Q ss_pred EEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCC
Q 004428 348 LILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGN 427 (754)
Q Consensus 348 LIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN 427 (754)
|||+|||+||.|+.+.+..+. +. +..
T Consensus 41 lil~Ptr~La~Q~~~~l~~~~-------v~--------~~~--------------------------------------- 66 (440)
T 1yks_A 41 LVLAPTRVVLSEMKEAFHGLD-------VK--------FHT--------------------------------------- 66 (440)
T ss_dssp EEEESSHHHHHHHHHHTTTSC-------EE--------EES---------------------------------------
T ss_pred EEEcchHHHHHHHHHHHhcCC-------eE--------Eec---------------------------------------
Confidence 999999999999998776431 10 000
Q ss_pred CCCcccccccccHHHHhhhcccCCCCE-EEeCchhHHHHHhhhhcc-cccCcccCCceeEEEEecchhhhhcCchHHHHH
Q 004428 428 NDDNFSIGIKFTRKSIKLYNDFYTSDM-IVASPINLHQKMTKAEEN-KEQDVDYLSSIEVLIIDHADIILMQNWSWLIEV 505 (754)
Q Consensus 428 ~dD~FriGik~trk~lkLys~Fy~sDI-IVASPlgLr~lI~~~e~~-k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~I 505 (754)
..+ +|+||++|.+++....-. .-.....++.+.++||||||+|-+.....+..+
T Consensus 67 ------------------------~~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~ 122 (440)
T 1yks_A 67 ------------------------QAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWA 122 (440)
T ss_dssp ------------------------SCCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHH
T ss_pred ------------------------ccceeccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHH
Confidence 000 266777666554321000 001122489999999999999832222222222
Q ss_pred HHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEE
Q 004428 506 VEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQI 585 (754)
Q Consensus 506 l~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~ 585 (754)
...+. +. .+|+|+||||+++.+..++. . .+.+.. +
T Consensus 123 ~~~~~--~~---------------------~~~~l~~SAT~~~~~~~~~~----~-~~~~~~-----------------~ 157 (440)
T 1yks_A 123 AHRAR--AN---------------------ESATILMTATPPGTSDEFPH----S-NGEIED-----------------V 157 (440)
T ss_dssp HHHHH--TT---------------------SCEEEEECSSCTTCCCSSCC----C-SSCEEE-----------------E
T ss_pred HHHhc--cC---------------------CceEEEEeCCCCchhhhhhh----c-CCCeeE-----------------e
Confidence 22221 11 28999999999987543321 1 112211 1
Q ss_pred EEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh
Q 004428 586 YERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFF 665 (754)
Q Consensus 586 f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~ 665 (754)
-..++.... . .++..+.. ..+++|||||+...+..+...|++.++++..+|+ .+|.+++..|+
T Consensus 158 ~~~~~~~~~----~--------~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~ 220 (440)
T 1yks_A 158 QTDIPSEPW----N--------TGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIK 220 (440)
T ss_dssp ECCCCSSCC----S--------SSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC-------
T ss_pred eeccChHHH----H--------HHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhc
Confidence 111111111 0 11222222 3579999999999999999999999999999999 46788999999
Q ss_pred cCCccEEEEcccccccCccccCCCCeEEE-------------------ccCCCCCCchhhhccccCCC-C-CceEEEEe-
Q 004428 666 EGKRKMILYTERSHFYHRYKIRGIQNLII-------------------YSLPERKEFYPEIVNMLEGS-H-NMTCTVLF- 723 (754)
Q Consensus 666 ~G~~~ILL~TErahffRr~dIkgV~~VIf-------------------Y~lP~~pefY~erigrt~ra-~-~g~~~~L~- 723 (754)
+|+++|||+|+++. +|+||+ |++||+ |++|.++..|.||+||+||. + .|.|++||
T Consensus 221 ~g~~~vLVaT~v~e--~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 221 QKKPDFILATDIAE--MGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp -CCCSEEEESSSTT--CCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CCCceEEEECChhh--eeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 99999999999999 999999 999996 99999999999999999997 3 79999997
Q ss_pred --chhcHHHHH
Q 004428 724 --SRFDMLRLE 732 (754)
Q Consensus 724 --sk~D~~~LE 732 (754)
++.|...+.
T Consensus 298 ~~~~~~~~~l~ 308 (440)
T 1yks_A 298 PTSENNAHHVC 308 (440)
T ss_dssp CCCCCCTTBHH
T ss_pred cCChhhhhhhh
Confidence 566644443
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=255.93 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=158.6
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLN 304 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LN 304 (754)
....+|.+++|++.|+++|..+ |+.. |||+|+++||.++++ +|++++++|| +|||.+|+||+|+
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~----g~~~-pt~iQ~~ai~~il~~~~~~~l~~a~TG---------sGKT~a~~lp~l~ 154 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAM----GFNR-PSKIQENALPLMLAEPPQNLIAQSQSG---------TGKTAAFVLAMLS 154 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHTSSSCCCEEEECCTT---------SSHHHHHHHHHHH
T ss_pred CCcCCHhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHHcCCCCeEEEECCCC---------CCccHHHHHHHHH
Confidence 3467899999999999999885 8876 899999999999998 9999999998 8999999999999
Q ss_pred HHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccc
Q 004428 305 HIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCD 384 (754)
Q Consensus 305 Hv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ 384 (754)
++... -..|++|||+|||+||.|+.+.+.+++..... .+...
T Consensus 155 ~l~~~--------------------------------~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~------~~~~~ 196 (300)
T 3fmo_B 155 QVEPA--------------------------------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPE------LKLAY 196 (300)
T ss_dssp HCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT------CCEEE
T ss_pred hhhcc--------------------------------CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC------cEEEE
Confidence 98532 12589999999999999999999998653211 11222
Q ss_pred ccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHH
Q 004428 385 EFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQ 464 (754)
Q Consensus 385 efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~ 464 (754)
.+|+. .+.+.. ..++|||||||++|.+
T Consensus 197 ~~~~~-----------------------------------------------~~~~~~------~~~~~IlV~TP~~l~~ 223 (300)
T 3fmo_B 197 AVRGN-----------------------------------------------KLERGQ------KISEQIVIGTPGTVLD 223 (300)
T ss_dssp ESTTC-----------------------------------------------CCCTTC------CCCCSEEEECHHHHHH
T ss_pred EeCCc-----------------------------------------------cHhhhh------cCCCCEEEECHHHHHH
Confidence 22222 111111 1468999999999999
Q ss_pred HHhhhhcccccCcccCCceeEEEEecchhhhh-cC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE
Q 004428 465 KMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL 542 (754)
Q Consensus 465 lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF 542 (754)
++.+ .....|+.+.+|||||||+|+. +. +.++..|+ ..+|+. +|+|+|
T Consensus 224 ~l~~------~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~---~~~~~~---------------------~q~i~~ 273 (300)
T 3fmo_B 224 WCSK------LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ---RMLPRN---------------------CQMLLF 273 (300)
T ss_dssp HHTT------TCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHH---TTSCTT---------------------CEEEEE
T ss_pred HHHh------cCCCChhhceEEEEeCHHHHhhccCcHHHHHHHH---HhCCCC---------------------CEEEEE
Confidence 9962 2344589999999999999994 33 34444444 444543 899999
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 543 SYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 543 SAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
|||+++++..++..++.|+ ..|.+
T Consensus 274 SAT~~~~v~~~a~~~l~~p-~~i~~ 297 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDP-NVIKL 297 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSC-EEEEE
T ss_pred eccCCHHHHHHHHHHCCCC-eEEEe
Confidence 9999999999999999985 45555
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=294.27 Aligned_cols=321 Identities=11% Similarity=0.090 Sum_probs=226.1
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|+|.++++.+++++|++++++|| +|||.+|+++++..+.
T Consensus 40 l~~~Q~~aI~~il~g~~vlv~apTG---------sGKTlv~~~~i~~~~~------------------------------ 80 (997)
T 4a4z_A 40 LDTFQKEAVYHLEQGDSVFVAAHTS---------AGKTVVAEYAIAMAHR------------------------------ 80 (997)
T ss_dssp CCHHHHHHHHHHHTTCEEEEECCTT---------SCSHHHHHHHHHHHHH------------------------------
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCC---------CcHHHHHHHHHHHHHh------------------------------
Confidence 6999999999999999999999998 8999999999887642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..+++|||+|||+||.|+++.+.++.+... + ....|
T Consensus 81 -----~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~---v------~~l~G------------------------------ 116 (997)
T 4a4z_A 81 -----NMTKTIYTSPIKALSNQKFRDFKETFDDVN---I------GLITG------------------------------ 116 (997)
T ss_dssp -----TTCEEEEEESCGGGHHHHHHHHHTTC--CC---E------EEECS------------------------------
T ss_pred -----cCCeEEEEeCCHHHHHHHHHHHHHHcCCCe---E------EEEeC------------------------------
Confidence 136899999999999999999998653211 1 11111
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
| .... ..++|||+||++|+..+.. ...+|+.+.++||||||.|...
T Consensus 117 --------~---------~~~~----------~~~~IlV~Tpe~L~~~l~~-------~~~~l~~l~lvViDEaH~l~d~ 162 (997)
T 4a4z_A 117 --------D---------VQIN----------PDANCLIMTTEILRSMLYR-------GADLIRDVEFVIFDEVHYVNDQ 162 (997)
T ss_dssp --------S---------CEEC----------TTSSEEEEEHHHHHHHHHH-------TCSGGGGEEEEEECCTTCCCTT
T ss_pred --------C---------CccC----------CCCCEEEECHHHHHHHHHh-------CchhhcCCCEEEEECccccccc
Confidence 1 1111 2479999999999998862 4557899999999999988744
Q ss_pred Cch-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH--HHHHHHHhhcCCCceEEEeecccCc
Q 004428 498 NWS-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE--INAFFNHHCANYQGKVKLACEYKGV 574 (754)
Q Consensus 498 Nw~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe--insL~~~~~~N~~G~Vkv~~~~~g~ 574 (754)
.+. .+..++.+ +|.. .|+|++|||.+.. +...+.... .+.+.+.... +
T Consensus 163 ~~g~~~e~ii~~---l~~~---------------------v~iIlLSAT~~n~~ef~~~l~~~~---~~~~~vi~~~-~- 213 (997)
T 4a4z_A 163 DRGVVWEEVIIM---LPQH---------------------VKFILLSATVPNTYEFANWIGRTK---QKNIYVISTP-K- 213 (997)
T ss_dssp CTTCCHHHHHHH---SCTT---------------------CEEEEEECCCTTHHHHHHHHHHHH---TCCEEEEECS-S-
T ss_pred chHHHHHHHHHh---cccC---------------------CCEEEEcCCCCChHHHHHHHhccc---CCceEEEecC-C-
Confidence 333 34455544 3443 7999999998743 333332211 1222221110 0
Q ss_pred ccccccceeEEEE-------EeccCcccc---------------------------------------------------
Q 004428 575 LPKVLLNVRQIYE-------RFNADSIAK--------------------------------------------------- 596 (754)
Q Consensus 575 i~~v~~~I~Q~f~-------r~~~~s~~~--------------------------------------------------- 596 (754)
-...+.+.+. .++......
T Consensus 214 ---r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~ 290 (997)
T 4a4z_A 214 ---RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNS 290 (997)
T ss_dssp ---CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------------------------------------
T ss_pred ---CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 0111222111 111000000
Q ss_pred ----------------------------hhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCC-----
Q 004428 597 ----------------------------ADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNA----- 643 (754)
Q Consensus 597 ----------------------------~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~----- 643 (754)
..... ...++..+......++||||+|...+..+..+|...++
T Consensus 291 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 366 (997)
T 4a4z_A 291 TRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKT----WPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKE 366 (997)
T ss_dssp --------------------------CCCCTTH----HHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHH
T ss_pred cccccccccccccccccccccccccccccchhH----HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHH
Confidence 00001 12344445555678999999999999999999987766
Q ss_pred ----------------------------------ceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCC
Q 004428 644 ----------------------------------SFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGI 689 (754)
Q Consensus 644 ----------------------------------~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV 689 (754)
.+..+|+.+++.+|..+...|.+|.++|||+|+.++ +|+||++
T Consensus 367 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a--~GIDiP~- 443 (997)
T 4a4z_A 367 KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFA--MGLNLPT- 443 (997)
T ss_dssp HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHH--HSCCCCC-
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhh--CCCCCCC-
Confidence 368999999999999999999999999999999999 9999999
Q ss_pred CeEEEccCCC---------CCCchhhhccccCCCC---CceEEEEec--hhcHHHHHHH
Q 004428 690 QNLIIYSLPE---------RKEFYPEIVNMLEGSH---NMTCTVLFS--RFDMLRLERI 734 (754)
Q Consensus 690 ~~VIfY~lP~---------~pefY~erigrt~ra~---~g~~~~L~s--k~D~~~LErI 734 (754)
.+||++++|. ++.-|.||+||+||.+ .|.|+.++. ..+...++++
T Consensus 444 ~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 444 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 7888877777 8999999999999976 578888873 3455555544
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=248.83 Aligned_cols=231 Identities=20% Similarity=0.229 Sum_probs=165.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
++.+|.+++|++.+++++..+ |+.. |||+|++++|.+++++|++++++|| +|||.+|++|+++++.
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~l~~a~TG---------sGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLA----SYQR-PTPIQKNAIPAILEHRDIMACAQTG---------SGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHH
Confidence 678899999999999888663 7775 8999999999999999999999998 8999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
..+..- .+......|++|||+|||+||.|+.+.+.+++.... .+....+|
T Consensus 87 ~~~~~~-----------------------~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~~~~g 136 (253)
T 1wrb_A 87 CQDLNQ-----------------------QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP-------LRSCVVYG 136 (253)
T ss_dssp TTCC-----------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-------CCEEEECS
T ss_pred hhcccc-----------------------ccccccCCceEEEEECCHHHHHHHHHHHHHHhccCC-------ceEEEEEC
Confidence 653210 000112358999999999999999999998864321 12222233
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .... ..+... .++|||||||++|..++.
T Consensus 137 ~~-----------------------------------------------~~~~-~~~~~~--~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 137 GA-----------------------------------------------DTHS-QIREVQ--MGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp SS-----------------------------------------------CSHH-HHHHHS--SCCSEEEECHHHHHHHHH
T ss_pred CC-----------------------------------------------CHHH-HHHHhC--CCCCEEEECHHHHHHHHH
Confidence 22 1111 111121 468999999999999987
Q ss_pred hhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. ....++.+.++||||||+|+ ++++.++..|+..++. |. ...+|+|+||||+
T Consensus 167 ~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~-~~-------------------~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 167 K-------NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNM-PS-------------------GINRQTLMFSATF 219 (253)
T ss_dssp T-------TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCC-CC-------------------GGGCEEEEEESSC
T ss_pred c-------CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccC-CC-------------------CCCcEEEEEEEeC
Confidence 3 33468999999999999998 5566788888876543 32 0138999999999
Q ss_pred CHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEE
Q 004428 547 NPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQI 585 (754)
Q Consensus 547 ~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~ 585 (754)
++++..+++.++.|+ ..|.+... ......|+|.
T Consensus 220 ~~~~~~~~~~~l~~~-~~i~~~~~-----~~~~~~i~q~ 252 (253)
T 1wrb_A 220 PKEIQKLAADFLYNY-IFMTVGRV-----GSTSDSIKQE 252 (253)
T ss_dssp CHHHHHHHHHHCSSC-EEEEEC-----------------
T ss_pred CHHHHHHHHHHcCCC-EEEEECCC-----CCCcCCceec
Confidence 999999999999985 35554322 1234567764
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=290.11 Aligned_cols=309 Identities=12% Similarity=0.088 Sum_probs=221.4
Q ss_pred CCHHHHHHhhhhhC----Cc--cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 258 HSSKQRSFFSLCNS----YR--DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 258 pTpiQ~~~ip~i~~----y~--Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
+||.|+++++.+++ ++ |++.++.|| +|||.+|+++++..+..
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TG---------sGKT~val~aa~~~~~~----------------------- 651 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVG---------FGKTEVAMRAAFLAVDN----------------------- 651 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCC---------TTTHHHHHHHHHHHHTT-----------------------
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCC---------CCHHHHHHHHHHHHHHh-----------------------
Confidence 69999999999876 66 999999998 89999999999876531
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.++||||+|||+||.|+.+.+.+..+... +.+. ...|..
T Consensus 652 ------------g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~------~l~~~~---------------------- 690 (1151)
T 2eyq_A 652 ------------HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIE------MISRFR---------------------- 690 (1151)
T ss_dssp ------------TCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEE------EESTTS----------------------
T ss_pred ------------CCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEE------EEeCCC----------------------
Confidence 25899999999999999999998764321 1110 001100
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
+.+-.+..++-... ..+||||+||..|.. + ..++.+.+||||||
T Consensus 691 -----------------------~~~~~~~~~~~l~~-g~~dIvV~T~~ll~~-----------~-~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 691 -----------------------SAKEQTQILAEVAE-GKIDILIGTHKLLQS-----------D-VKFKDLGLLIVDEE 734 (1151)
T ss_dssp -----------------------CHHHHHHHHHHHHT-TCCSEEEECTHHHHS-----------C-CCCSSEEEEEEESG
T ss_pred -----------------------CHHHHHHHHHHHhc-CCCCEEEECHHHHhC-----------C-ccccccceEEEech
Confidence 00111122222221 358999999965531 1 24789999999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecc
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEY 571 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~ 571 (754)
|++-.. ...++..+. . .+|+|++|||..|....+....+.++ .+....
T Consensus 735 H~~g~~----~~~~l~~l~---~---------------------~~~vl~lSATp~p~~l~~~~~~~~~~----~~i~~~ 782 (1151)
T 2eyq_A 735 HRFGVR----HKERIKAMR---A---------------------NVDILTLTATPIPRTLNMAMSGMRDL----SIIATP 782 (1151)
T ss_dssp GGSCHH----HHHHHHHHH---T---------------------TSEEEEEESSCCCHHHHHHHTTTSEE----EECCCC
T ss_pred HhcChH----HHHHHHHhc---C---------------------CCCEEEEcCCCChhhHHHHHhcCCCc----eEEecC
Confidence 996432 233333331 1 27999999999988776665544442 221110
Q ss_pred cCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC--CCceEeec
Q 004428 572 KGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ--NASFCLLG 649 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~--~~~f~~Ih 649 (754)
. .....+++.+...+. . . ....++..+. ..+++||||++..+..++...|++. ++.++.+|
T Consensus 783 ~----~~r~~i~~~~~~~~~-------~-~---i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lh 845 (1151)
T 2eyq_A 783 P----ARRLAVKTFVREYDS-------M-V---VREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 845 (1151)
T ss_dssp C----CBCBCEEEEEEECCH-------H-H---HHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECC
T ss_pred C----CCccccEEEEecCCH-------H-H---HHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 0 011234444433221 1 1 1123333332 3578999999999999999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCC-CCCCchhhhccccCCCC-CceEEEEechh
Q 004428 650 DYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLP-ERKEFYPEIVNMLEGSH-NMTCTVLFSRF 726 (754)
Q Consensus 650 ey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP-~~pefY~erigrt~ra~-~g~~~~L~sk~ 726 (754)
+.+++.+|.+++..|++|+++|||+|+++. +|+||+++++||+++.+ -++..|.||+||+||.+ .|.|+.++...
T Consensus 846 g~~~~~eR~~il~~F~~g~~~VLVaT~v~e--~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 846 GQMRERELERVMNDFHHQRFNVLVCTTIIE--TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSCCHHHHHHHHHHHHTTSCCEEEESSTTG--GGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCcce--eeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999999999999999999999999 99999999999999884 46677999999999988 78999988754
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=296.42 Aligned_cols=346 Identities=11% Similarity=0.094 Sum_probs=238.9
Q ss_pred CCCCCCCHHHHHHhhhhhC-CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCNS-YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~~-y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
+|.. ++|+|.++|+.+++ ..+|+++|+|| +|||.+|.++|++++.+.
T Consensus 923 ~f~~-fnpiQ~q~~~~l~~~~~nvlv~APTG---------SGKTliaelail~~l~~~---------------------- 970 (1724)
T 4f92_B 923 KFPF-FNPIQTQVFNTVYNSDDNVFVGAPTG---------SGKTICAEFAILRMLLQS---------------------- 970 (1724)
T ss_dssp TCSB-CCHHHHHHHHHHHSCCSCEEEECCTT---------SCCHHHHHHHHHHHHHHC----------------------
T ss_pred cCCC-CCHHHHHHHHHHhcCCCcEEEEeCCC---------CCchHHHHHHHHHHHHhC----------------------
Confidence 5654 79999999999865 56799999998 899999999999999753
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHh-CCcccccccccccccccccCCCccccCcccchhhhcccccccC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRL-TPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKS 410 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L-~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~ 410 (754)
...|||+++|||+||.|++..+.+. +.... + +..
T Consensus 971 -----------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g-~------~V~--------------------------- 1005 (1724)
T 4f92_B 971 -----------SEGRCVYITPMEALAEQVYMDWYEKFQDRLN-K------KVV--------------------------- 1005 (1724)
T ss_dssp -----------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSC-C------CEE---------------------------
T ss_pred -----------CCCEEEEEcChHHHHHHHHHHHHHHhchhcC-C------EEE---------------------------
Confidence 1247999999999999999999764 33221 1 111
Q ss_pred CCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEec
Q 004428 411 NSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDH 490 (754)
Q Consensus 411 ~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDe 490 (754)
.+.|+ ... ..++. .++|||||||.+|..++... ....+|+.|.++||||
T Consensus 1006 ------------~ltGd--------~~~---~~~~~---~~~~IiV~TPEkld~llr~~-----~~~~~l~~v~lvViDE 1054 (1724)
T 4f92_B 1006 ------------LLTGE--------TST---DLKLL---GKGNIIISTPEKWDILSRRW-----KQRKNVQNINLFVVDE 1054 (1724)
T ss_dssp ------------ECCSC--------HHH---HHHHH---HHCSEEEECHHHHHHHHTTT-----TTCHHHHSCSEEEECC
T ss_pred ------------EEECC--------CCc---chhhc---CCCCEEEECHHHHHHHHhCc-----ccccccceeeEEEeec
Confidence 12221 111 11222 24899999999998877531 2345689999999999
Q ss_pred chhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc-CCCceEEEee
Q 004428 491 ADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA-NYQGKVKLAC 569 (754)
Q Consensus 491 AD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~-N~~G~Vkv~~ 569 (754)
||.|..+.-..+..++..|.. +..+...-.|.|++|||++. ...++. ++. +..+...+.+
T Consensus 1055 ~H~l~d~rg~~le~il~rl~~-----------------i~~~~~~~~riI~lSATl~N-~~dla~-WL~~~~~~~~~~~~ 1115 (1724)
T 4f92_B 1055 VHLIGGENGPVLEVICSRMRY-----------------ISSQIERPIRIVALSSSLSN-AKDVAH-WLGCSATSTFNFHP 1115 (1724)
T ss_dssp GGGGGSTTHHHHHHHHHHHHH-----------------HHHTTSSCCEEEEEESCBTT-HHHHHH-HHTCCSTTEEECCG
T ss_pred hhhcCCCCCccHHHHHHHHHH-----------------HHhhcCCCceEEEEeCCCCC-HHHHHH-HhCCCCCCeEEeCC
Confidence 998775443445555544321 11111223799999999962 344443 332 2222222222
Q ss_pred cccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHHhC-------
Q 004428 570 EYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLKSQ------- 641 (754)
Q Consensus 570 ~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk~~------- 641 (754)
.. =..++++.++-++... ...|+.-..+.+...+.. ...+++||||+|+..+..++..|.+.
T Consensus 1116 ~~------RPvpL~~~i~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~ 1185 (1724)
T 4f92_B 1116 NV------RPVPLELHIQGFNISH----TQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQR 1185 (1724)
T ss_dssp GG------CSSCEEEEEEEECCCS----HHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCT
T ss_pred CC------CCCCeEEEEEeccCCC----chhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccch
Confidence 11 0124555555555432 233444333333333333 45678999999999998887766321
Q ss_pred ---------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE-
Q 004428 642 ---------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI- 693 (754)
Q Consensus 642 ---------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI- 693 (754)
..-++..|+.+++.+|......|++|.++|||||+.++ +|++++.+..||
T Consensus 1186 ~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA--~GVnlPa~~VVI~ 1263 (1724)
T 4f92_B 1186 QRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLC--WGMNVAAHLVIIM 1263 (1724)
T ss_dssp TTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGS--SSCCCCBSEEEEE
T ss_pred hhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHH--cCCCCCccEEEEe
Confidence 12367789999999999999999999999999999999 999999988888
Q ss_pred ---------EccCCCCCCchhhhccccCCCC---CceEEEEechhcHHHHHHHhCc
Q 004428 694 ---------IYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRFDMLRLERIVGS 737 (754)
Q Consensus 694 ---------fY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~D~~~LErIVGt 737 (754)
++..|-.+..|.||+||+||++ .|.|+.|+...+...+++.++.
T Consensus 1264 ~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1264 DTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp CSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS
T ss_pred cCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCC
Confidence 2345677889999999999987 5889999888888777776654
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-29 Score=287.25 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=195.1
Q ss_pred HHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccccc
Q 004428 260 SKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLD 339 (754)
Q Consensus 260 piQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RD 339 (754)
+.|+++++.+.+++|++.+++|| +|||.+|.+++++.
T Consensus 220 ~~q~~i~~~L~~~~~vlv~ApTG---------SGKT~a~~l~ll~~---------------------------------- 256 (666)
T 3o8b_A 220 TDNSSPPAVPQSFQVAHLHAPTG---------SGKSTKVPAAYAAQ---------------------------------- 256 (666)
T ss_dssp CCCCSCCCCCSSCEEEEEECCTT---------SCTTTHHHHHHHHT----------------------------------
T ss_pred HHHHHHHHHHHcCCeEEEEeCCc---------hhHHHHHHHHHHHC----------------------------------
Confidence 35566666667899999999998 89999999998751
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCC
Q 004428 340 RGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSD 419 (754)
Q Consensus 340 QGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D 419 (754)
..+||||+|||+||.|+.+.+.+..... + ...+
T Consensus 257 ----g~~vLVl~PTReLA~Qia~~l~~~~g~~----v------g~~v--------------------------------- 289 (666)
T 3o8b_A 257 ----GYKVLVLNPSVAATLGFGAYMSKAHGID----P------NIRT--------------------------------- 289 (666)
T ss_dssp ----TCCEEEEESCHHHHHHHHHHHHHHHSCC----C------EEEC---------------------------------
T ss_pred ----CCeEEEEcchHHHHHHHHHHHHHHhCCC----e------eEEE---------------------------------
Confidence 1379999999999999998776543211 0 0011
Q ss_pred ceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc
Q 004428 420 YQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499 (754)
Q Consensus 420 ~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw 499 (754)
+| .. + ..+++|+||||++|. . .....++.+.+||||||+.+-|++.
T Consensus 290 -----G~----------~~----~-----~~~~~IlV~TPGrLl---~-------~~~l~l~~l~~lVlDEAH~l~~~~~ 335 (666)
T 3o8b_A 290 -----GV----------RT----I-----TTGAPVTYSTYGKFL---A-------DGGCSGGAYDIIICDECHSTDSTTI 335 (666)
T ss_dssp -----SS----------CE----E-----CCCCSEEEEEHHHHH---H-------TTSCCTTSCSEEEETTTTCCSHHHH
T ss_pred -----Cc----------Ee----c-----cCCCCEEEECcHHHH---h-------CCCcccCcccEEEEccchhcCccHH
Confidence 11 00 0 146899999999983 3 1234588999999999955446665
Q ss_pred hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCcccc--EEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 500 SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQ--TVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 500 ~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQ--TllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
..+..|++.+ |. .|| .+++|||+++.+. .+.+....+.....
T Consensus 336 ~~l~~Il~~l---~~---------------------~~~~llil~SAT~~~~i~-------~~~p~i~~v~~~~~----- 379 (666)
T 3o8b_A 336 LGIGTVLDQA---ET---------------------AGARLVVLATATPPGSVT-------VPHPNIEEVALSNT----- 379 (666)
T ss_dssp HHHHHHHHHT---TT---------------------TTCSEEEEEESSCTTCCC-------CCCTTEEEEECBSC-----
T ss_pred HHHHHHHHhh---hh---------------------cCCceEEEECCCCCcccc-------cCCcceEEEeeccc-----
Confidence 6677776665 33 266 5666999997421 11111111111100
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
..+ .+.. . .++ +.....+++||||+++.++.+|...|++.++.+..+|+.++|.+
T Consensus 380 --~~i-----~~~~-~---------------~~~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e- 434 (666)
T 3o8b_A 380 --GEI-----PFYG-K---------------AIP-IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV- 434 (666)
T ss_dssp --SSE-----EETT-E---------------EEC-GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-
T ss_pred --chh-----HHHH-h---------------hhh-hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-
Confidence 001 0000 0 000 11124689999999999999999999999999999999999986
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEE----------Ecc-----------CCCCCCchhhhccccCCCCC
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI----------IYS-----------LPERKEFYPEIVNMLEGSHN 716 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI----------fY~-----------lP~~pefY~erigrt~ra~~ 716 (754)
|+++..+|||+||+++ ||+||+ |++|| ||| +|.+++.|.||+||+||...
T Consensus 435 ------r~~~~~~VLVATdVae--rGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~ 505 (666)
T 3o8b_A 435 ------IPTIGDVVVVATDALM--TGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRR 505 (666)
T ss_dssp ------SCSSSCEEEEECTTHH--HHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSC
T ss_pred ------HHhCCCcEEEECChHH--ccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCC
Confidence 5667779999999999 999996 99988 788 99999999999999999447
Q ss_pred ceEEEEechhc
Q 004428 717 MTCTVLFSRFD 727 (754)
Q Consensus 717 g~~~~L~sk~D 727 (754)
|. +.||++.|
T Consensus 506 G~-i~lvt~~e 515 (666)
T 3o8b_A 506 GI-YRFVTPGE 515 (666)
T ss_dssp EE-EEESCCCC
T ss_pred CE-EEEEecch
Confidence 88 89998765
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=242.34 Aligned_cols=216 Identities=17% Similarity=0.148 Sum_probs=164.4
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+...|++..+|.+++|++.+++.+.+. |+.. |||+|++++|.+++++|++++++|| +|||.+|++|
T Consensus 21 ~~~~p~~~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~g~~~l~~apTG---------sGKT~~~~l~ 86 (242)
T 3fe2_A 21 GHNCPKPVLNFYEANFPANVMDVIARQ----NFTE-PTAIQAQGWPVALSGLDMVGVAQTG---------SGKTLSYLLP 86 (242)
T ss_dssp SSCCCCCCSSTTTTTCCHHHHHHHHTT----TCCS-CCHHHHHHHHHHHHTCCEEEEECTT---------SCHHHHHHHH
T ss_pred CCCCCCccCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCc---------CHHHHHHHHH
Confidence 345677889999999999999998874 8876 8999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
+++++.+.+.. ..-..|++|||+|||+||.|+.+.+.++..... .+
T Consensus 87 ~l~~l~~~~~~---------------------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-------~~ 132 (242)
T 3fe2_A 87 AIVHINHQPFL---------------------------ERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-------LK 132 (242)
T ss_dssp HHHHHHTSCCC---------------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT-------CC
T ss_pred HHHHHHhcccc---------------------------ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC-------ce
Confidence 99999754210 001358899999999999999999998854321 12
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+|+. ......-.+. .++||||+||++
T Consensus 133 ~~~~~g~~-----------------------------------------------~~~~~~~~~~---~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 133 STCIYGGA-----------------------------------------------PKGPQIRDLE---RGVEICIATPGR 162 (242)
T ss_dssp EEEECTTS-----------------------------------------------CHHHHHHHHH---HCCSEEEECHHH
T ss_pred EEEEECCC-----------------------------------------------ChHHHHHHhc---CCCCEEEECHHH
Confidence 22233322 1111111121 368999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTV 540 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTl 540 (754)
|.+++.. ....++.+.++||||||.|+. ++...+..|+ ..+|.+ +|++
T Consensus 163 l~~~l~~-------~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~---~~~~~~---------------------~q~~ 211 (242)
T 3fe2_A 163 LIDFLEC-------GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIV---DQIRPD---------------------RQTL 211 (242)
T ss_dssp HHHHHHH-------TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHH---TTSCSS---------------------CEEE
T ss_pred HHHHHHc-------CCCCcccccEEEEeCHHHHhhhCcHHHHHHHH---HhCCcc---------------------ceEE
Confidence 9999863 334689999999999999984 4444555554 444543 8999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 541 LLSYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 541 lFSAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
+||||+++++..+++.++.|+ -.|.+
T Consensus 212 ~~SAT~~~~~~~~~~~~l~~~-~~i~~ 237 (242)
T 3fe2_A 212 MWSATWPKEVRQLAEDFLKDY-IHINI 237 (242)
T ss_dssp EEESCCCHHHHHHHHHHCSSC-EEEEE
T ss_pred EEEeecCHHHHHHHHHHCCCC-EEEEe
Confidence 999999999999999999985 34443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=285.24 Aligned_cols=329 Identities=13% Similarity=0.135 Sum_probs=219.9
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCC------ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCcc
Q 004428 240 KLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSY------RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLV 313 (754)
Q Consensus 240 ~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y------~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V 313 (754)
.+++.+.+. .++ . |||.|+++++.+.++ .|++.++.|| +|||.+|++++++++..
T Consensus 356 ~~~~~~~~~---lpf-~-lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TG---------SGKTlvall~il~~l~~----- 416 (780)
T 1gm5_A 356 KLAEEFIKS---LPF-K-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVG---------SGKTVVAQLAILDNYEA----- 416 (780)
T ss_dssp HHHHHHHHH---SSS-C-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSS---------SSHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHh---CCC-C-CCHHHHHHHHHHHhhccccCCCcEEEEcCCC---------CCHHHHHHHHHHHHHHc-----
Confidence 344554433 466 4 899999999999876 5999999998 89999999999998731
Q ss_pred ccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCcccc
Q 004428 314 TKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEE 393 (754)
Q Consensus 314 ~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~ 393 (754)
.++||||+|||+||.|+.+.+.++.+... + +....+|+...
T Consensus 417 ------------------------------g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i------~v~~l~G~~~~-- 457 (780)
T 1gm5_A 417 ------------------------------GFQTAFMVPTSILAIQHYRRTVESFSKFN-I------HVALLIGATTP-- 457 (780)
T ss_dssp ------------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCSS-C------CEEECCSSSCH--
T ss_pred ------------------------------CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-c------eEEEEeCCCCH--
Confidence 25799999999999999999998864321 1 12222232210
Q ss_pred CcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhccc
Q 004428 394 DKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENK 473 (754)
Q Consensus 394 ~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k 473 (754)
+-.+..+.-... ..+||||+||..|...
T Consensus 458 -------------------------------------------~~r~~~~~~l~~-g~~~IvVgT~~ll~~~-------- 485 (780)
T 1gm5_A 458 -------------------------------------------SEKEKIKSGLRN-GQIDVVIGTHALIQED-------- 485 (780)
T ss_dssp -------------------------------------------HHHHHHHHHHHS-SCCCEEEECTTHHHHC--------
T ss_pred -------------------------------------------HHHHHHHHHHhc-CCCCEEEECHHHHhhh--------
Confidence 001112221111 3589999999876431
Q ss_pred ccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHH
Q 004428 474 EQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAF 553 (754)
Q Consensus 474 ~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL 553 (754)
..++.+.++||||||+|-...+. .+ +. . ....|+|++|||..|....+
T Consensus 486 ----~~~~~l~lVVIDEaHr~g~~qr~-------~l-------------------~~-~-~~~~~vL~mSATp~p~tl~~ 533 (780)
T 1gm5_A 486 ----VHFKNLGLVIIDEQHRFGVKQRE-------AL-------------------MN-K-GKMVDTLVMSATPIPRSMAL 533 (780)
T ss_dssp ----CCCSCCCEEEEESCCCC-----C-------CC-------------------CS-S-SSCCCEEEEESSCCCHHHHH
T ss_pred ----hhccCCceEEecccchhhHHHHH-------HH-------------------HH-h-CCCCCEEEEeCCCCHHHHHH
Confidence 24788999999999996311110 00 00 0 12379999999998876554
Q ss_pred HHHhhcCCCceEEEeec-ccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh--cCCCcEEEEecch--
Q 004428 554 FNHHCANYQGKVKLACE-YKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD--SIQGGIMLFLSSY-- 628 (754)
Q Consensus 554 ~~~~~~N~~G~Vkv~~~-~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy-- 628 (754)
.. ..+.. +.+... ..| ...|...+. ... +.. .++..+.. ....+++||||+.
T Consensus 534 ~~--~g~~~--~s~i~~~p~~-----r~~i~~~~~--~~~--------~~~----~l~~~i~~~l~~g~qvlVf~~~ie~ 590 (780)
T 1gm5_A 534 AF--YGDLD--VTVIDEMPPG-----RKEVQTMLV--PMD--------RVN----EVYEFVRQEVMRGGQAFIVYPLIEE 590 (780)
T ss_dssp HH--TCCSS--CEEECCCCSS-----CCCCEECCC--CSS--------THH----HHHHHHHHHTTTSCCBCCBCCCC--
T ss_pred HH--hCCcc--eeeeeccCCC-----CcceEEEEe--ccc--------hHH----HHHHHHHHHHhcCCcEEEEecchhh
Confidence 32 22211 222111 011 112222111 111 111 12222222 2356899999965
Q ss_pred ------hcHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCC
Q 004428 629 ------FEFVRLRNFLKS---QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPE 699 (754)
Q Consensus 629 ------~d~vrlrn~Lk~---~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~ 699 (754)
..+..+...|++ .++.+..+|+.+++.+|.+++..|++|+++|||+|+++. +|+||++|++||+|++|.
T Consensus 591 se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie--~GIDiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 591 SDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE--VGIDVPRANVMVIENPER 668 (780)
T ss_dssp ------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC--SCSCCTTCCEEEBCSCSS
T ss_pred hhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC--ccccCCCCCEEEEeCCCC
Confidence 447788888988 478999999999999999999999999999999999999 999999999999999997
Q ss_pred C-CCchhhhccccCCCC-CceEEEEech---hcHHHHHHHh
Q 004428 700 R-KEFYPEIVNMLEGSH-NMTCTVLFSR---FDMLRLERIV 735 (754)
Q Consensus 700 ~-pefY~erigrt~ra~-~g~~~~L~sk---~D~~~LErIV 735 (754)
. ...|.+|+||+||.+ .|.|+.++++ .+..+|+.+.
T Consensus 669 ~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~~l~ 709 (780)
T 1gm5_A 669 FGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFT 709 (780)
T ss_dssp SCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHHHHHH
Confidence 4 566778999999987 6899999873 3344555444
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=259.23 Aligned_cols=318 Identities=9% Similarity=0.085 Sum_probs=215.5
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|.++++.+++++|++.++.|| +|||.+|+++++..+...
T Consensus 114 l~~~Q~~ai~~~~~~~~~ll~~~tG---------sGKT~~~~~~~~~~~~~~---------------------------- 156 (510)
T 2oca_A 114 PHWYQKDAVFEGLVNRRRILNLPTS---------AGRSLIQALLARYYLENY---------------------------- 156 (510)
T ss_dssp CCHHHHHHHHHHHHHSEEEEECCST---------TTHHHHHHHHHHHHHHHC----------------------------
T ss_pred CCHHHHHHHHHHHhcCCcEEEeCCC---------CCHHHHHHHHHHHHHhCC----------------------------
Confidence 7999999999999999999999998 899999999888776421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
+++||||+||++||.|+.+.+.++..... .+....+|+.
T Consensus 157 ------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~-------~~v~~~~~~~---------------------------- 195 (510)
T 2oca_A 157 ------EGKILIIVPTTALTTQMADDFVDYRLFSH-------AMIKKIGGGA---------------------------- 195 (510)
T ss_dssp ------SSEEEEEESSHHHHHHHHHHHHHTTSSCG-------GGEEECGGGC----------------------------
T ss_pred ------CCeEEEEECcHHHHHHHHHHHHHhhcCCc-------cceEEEecCC----------------------------
Confidence 34899999999999999999988743221 0111112211
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
. ...+ + ..+++|+|+||..|... ...++..+.++||||||++..
T Consensus 196 ----------~---------~~~~---~---~~~~~I~i~T~~~l~~~----------~~~~~~~~~liIiDE~H~~~~- 239 (510)
T 2oca_A 196 ----------S---------KDDK---Y---KNDAPVVVGTWQTVVKQ----------PKEWFSQFGMMMNDECHLATG- 239 (510)
T ss_dssp ----------C---------TTGG---G---CTTCSEEEEEHHHHTTS----------CGGGGGGEEEEEEETGGGCCH-
T ss_pred ----------c---------cccc---c---ccCCcEEEEeHHHHhhc----------hhhhhhcCCEEEEECCcCCCc-
Confidence 0 0001 1 14689999999976431 224678899999999999874
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHH-hhcCCCceEEEeecc-----
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNH-HCANYQGKVKLACEY----- 571 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~-~~~N~~G~Vkv~~~~----- 571 (754)
.++..++ ..++. .++.|++|||.+.....++.. .+.. .+.+....
T Consensus 240 --~~~~~il---~~~~~---------------------~~~~l~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 290 (510)
T 2oca_A 240 --KSISSII---SGLNN---------------------CMFKFGLSGSLRDGKANIMQYVGMFG---EIFKPVTTSKLME 290 (510)
T ss_dssp --HHHHHHG---GGCTT---------------------CCEEEEEESCGGGCSSCHHHHHHHHC---SEECCCCCC----
T ss_pred --ccHHHHH---Hhccc---------------------CcEEEEEEeCCCCCcccHHHhHHhhC---CeEEeeCHHHHhh
Confidence 2333333 33332 278999999997654222211 1111 11111100
Q ss_pred cCcccccccceeEEEEEeccC--------cccc------hhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHH
Q 004428 572 KGVLPKVLLNVRQIYERFNAD--------SIAK------ADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNF 637 (754)
Q Consensus 572 ~g~i~~v~~~I~Q~f~r~~~~--------s~~~------~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~ 637 (754)
.|.+. ...+..+....+.. .... ....|.... ..++..+.......+|||++ ......|.+.
T Consensus 291 ~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~ 366 (510)
T 2oca_A 291 DGQVT--ELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI-AKLAIKLAQKDENAFVMFKH-VSHGKAIFDL 366 (510)
T ss_dssp -------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH-HHHHHHHHTTTCEEEEEESS-HHHHHHHHHH
T ss_pred CCcCC--CceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH-HHHHHHHHhcCCCeEEEEec-HHHHHHHHHH
Confidence 11111 11233333332210 0000 001122221 22233322224455666666 8888899999
Q ss_pred HHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCCC
Q 004428 638 LKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT-ERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHN 716 (754)
Q Consensus 638 Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T-ErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~ 716 (754)
|.+.+..+..+|+.+++.+|.+++..|++|+.+|||+| +.+. +|+||++|++||+|++|.++..|.+++||+||.+.
T Consensus 367 L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~--~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 367 IKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS--TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG 444 (510)
T ss_dssp HHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH--HSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTC
T ss_pred HHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh--cccccccCcEEEEeCCCCCHHHHHHHHhcccccCC
Confidence 99998899999999999999999999999999999999 9999 99999999999999999999999999999999875
Q ss_pred ce-EEEEec
Q 004428 717 MT-CTVLFS 724 (754)
Q Consensus 717 g~-~~~L~s 724 (754)
+. ++.+|+
T Consensus 445 ~~~~v~i~~ 453 (510)
T 2oca_A 445 SKTIATVWD 453 (510)
T ss_dssp CCCCCEEEE
T ss_pred CCceEEEEE
Confidence 43 555555
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=273.95 Aligned_cols=275 Identities=11% Similarity=0.098 Sum_probs=190.1
Q ss_pred HHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCC
Q 004428 263 RSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGF 342 (754)
Q Consensus 263 ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGf 342 (754)
......+.+++|++++++|| +|||.+|++|+|+++++.
T Consensus 12 ~~~~~~l~~~~~vlv~a~TG---------sGKT~~~~l~il~~~~~~--------------------------------- 49 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPG---------SGKTRKILPQIIKDAIQQ--------------------------------- 49 (459)
T ss_dssp ---CGGGSTTCEEEECCCTT---------SCTTTTHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHhcCCcEEEECCCC---------CCHHHHHHHHHHHHHHhC---------------------------------
Confidence 33366678899999999998 899999999999998632
Q ss_pred CCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCcee
Q 004428 343 TRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQI 422 (754)
Q Consensus 343 tRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~ 422 (754)
.+++|||+|||+||.|+.+.+..+. + ++. -+.
T Consensus 50 -~~~~lvl~Ptr~La~Q~~~~l~g~~-------v----~~~--~~~---------------------------------- 81 (459)
T 2z83_A 50 -RLRTAVLAPTRVVAAEMAEALRGLP-------V----RYQ--TSA---------------------------------- 81 (459)
T ss_dssp -TCCEEEEECSHHHHHHHHHHTTTSC-------E----EEC--C------------------------------------
T ss_pred -CCcEEEECchHHHHHHHHHHhcCce-------E----eEE--ecc----------------------------------
Confidence 3689999999999999998876221 1 000 000
Q ss_pred eccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhh-----hhc
Q 004428 423 LFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADII-----LMQ 497 (754)
Q Consensus 423 lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~m-----LmQ 497 (754)
+.+. -+ .+.-|.+.|.+.|...+-. ...|+.+.++||||||.+ +.
T Consensus 82 ---------------~~~~----~t--~~~~i~~~~~~~l~~~l~~--------~~~l~~~~~iViDEaH~~~~~~~~~- 131 (459)
T 2z83_A 82 ---------------VQRE----HQ--GNEIVDVMCHATLTHRLMS--------PNRVPNYNLFVMDEAHFTDPASIAA- 131 (459)
T ss_dssp ---------------------------CCCSEEEEEHHHHHHHHHS--------CC-CCCCSEEEESSTTCCSHHHHHH-
T ss_pred ---------------cccC----CC--CCcEEEEEchHHHHHHhhc--------cccccCCcEEEEECCccCCchhhHH-
Confidence 0000 00 1234666777766544431 135899999999999983 32
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccc
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPK 577 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~ 577 (754)
+.++..+. ..| .+|+|+||||+++++..+... +.+ +...
T Consensus 132 -~~~~~~~~----~~~----------------------~~~~il~SAT~~~~~~~~~~~---~~p--i~~~--------- 170 (459)
T 2z83_A 132 -RGYIATKV----ELG----------------------EAAAIFMTATPPGTTDPFPDS---NAP--IHDL--------- 170 (459)
T ss_dssp -HHHHHHHH----HTT----------------------SCEEEEECSSCTTCCCSSCCC---SSC--EEEE---------
T ss_pred -HHHHHHHh----ccC----------------------CccEEEEEcCCCcchhhhccC---CCC--eEEe---------
Confidence 22333222 112 289999999999765332211 111 1110
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
.+ .++.... .. ++..+. ...+++||||++...+..|.+.|++.++.+..+|+. +|
T Consensus 171 -----~~---~~~~~~~----~~--------~~~~l~-~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R 225 (459)
T 2z83_A 171 -----QD---EIPDRAW----SS--------GYEWIT-EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SY 225 (459)
T ss_dssp -----EC---CCCSSCC----SS--------CCHHHH-HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CC
T ss_pred -----cc---cCCcchh----HH--------HHHHHH-hcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HH
Confidence 00 0111100 00 111111 236799999999999999999999999999999983 67
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE--------------------ccCCCCCCchhhhccccCCCC--
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII--------------------YSLPERKEFYPEIVNMLEGSH-- 715 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf--------------------Y~lP~~pefY~erigrt~ra~-- 715 (754)
.++...|++|+.+|||+|+++. ||+||++ .+||+ |++|.++..|.||+||+||.+
T Consensus 226 ~~~~~~f~~g~~~iLVaT~v~~--~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 226 DTEYPKCKNGDWDFVITTDISE--MGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CCCGGGSSSCCCSEEEESSCC-----CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHhhccCCCceEEEECChHH--hCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC
Confidence 7889999999999999999999 9999999 99999 789999999999999999987
Q ss_pred CceEEEEechh
Q 004428 716 NMTCTVLFSRF 726 (754)
Q Consensus 716 ~g~~~~L~sk~ 726 (754)
.|.|++|++..
T Consensus 303 ~G~~~~~~~~~ 313 (459)
T 2z83_A 303 VGDEYHYGGAT 313 (459)
T ss_dssp CCEEEEECSCC
T ss_pred CCeEEEEEccc
Confidence 68999999875
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=232.35 Aligned_cols=211 Identities=19% Similarity=0.201 Sum_probs=161.0
Q ss_pred CcccCCCCCCcCC-CCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHH
Q 004428 222 GECFLKDDNLYSD-YGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLM 300 (754)
Q Consensus 222 ~~~~~~~~~~f~~-l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~L 300 (754)
...+|++..+|.+ +++++.+++++.+. |+.. |||+|++++|.+++++|++++++|| +|||.+|++
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~l~~apTG---------sGKT~~~~l 76 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRV----GILK-PTPIQSQAWPIILQGIDLIVVAQTG---------TGKTLSYLM 76 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHH
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHH
Confidence 4568888999999 89999999999886 7876 8999999999999999999999998 899999999
Q ss_pred HHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccc
Q 004428 301 HSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHID 380 (754)
Q Consensus 301 h~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~ 380 (754)
|++.++...... + ..-..+++|||+|||+||.|+.+.+.++.... .
T Consensus 77 ~~~~~l~~~~~~-------------------------~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--------~ 122 (228)
T 3iuy_A 77 PGFIHLDSQPIS-------------------------R-EQRNGPGMLVLTPTRELALHVEAECSKYSYKG--------L 122 (228)
T ss_dssp HHHHHHC-----------------------------------CCCSEEEECSSHHHHHHHHHHHHHHCCTT--------C
T ss_pred HHHHHHHhccch-------------------------h-hccCCCcEEEEeCCHHHHHHHHHHHHHhcccC--------c
Confidence 999999643210 0 01135899999999999999999999986322 1
Q ss_pred ccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCch
Q 004428 381 RFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPI 460 (754)
Q Consensus 381 Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPl 460 (754)
+....+|+... .-..+.+. .++||||+||+
T Consensus 123 ~~~~~~~~~~~---------------------------------------------~~~~~~~~-----~~~~iiv~Tp~ 152 (228)
T 3iuy_A 123 KSICIYGGRNR---------------------------------------------NGQIEDIS-----KGVDIIIATPG 152 (228)
T ss_dssp CEEEECC---------------------------------------------------CHHHHH-----SCCSEEEECHH
T ss_pred eEEEEECCCCh---------------------------------------------HHHHHHhc-----CCCCEEEECHH
Confidence 22233443210 00111221 46899999999
Q ss_pred hHHHHHhhhhcccccCcccCCceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 461 NLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 461 gLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
+|..++.. ....++.+.++||||||+|+ +++...+..|+..+ |. .+|+
T Consensus 153 ~l~~~~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~---~~---------------------~~~~ 201 (228)
T 3iuy_A 153 RLNDLQMN-------NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV---RP---------------------DRQT 201 (228)
T ss_dssp HHHHHHHT-------TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS---CS---------------------SCEE
T ss_pred HHHHHHHc-------CCcCcccceEEEEECHHHHhccchHHHHHHHHHhC---Cc---------------------CCeE
Confidence 99998862 34468999999999999998 44455667666554 33 2899
Q ss_pred EEEcCCCCHHHHHHHHHhhcCC
Q 004428 540 VLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~ 561 (754)
++||||+++++..++..++.|+
T Consensus 202 l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 202 VMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp EEEESCCCHHHHHHHHTTCSSC
T ss_pred EEEEeeCCHHHHHHHHHHCCCC
Confidence 9999999999999999999885
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=230.94 Aligned_cols=206 Identities=16% Similarity=0.212 Sum_probs=155.6
Q ss_pred cccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHH
Q 004428 223 ECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHS 302 (754)
Q Consensus 223 ~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~ 302 (754)
.+.|....+|.+++|++.|++++.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|++++
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~ai~~i~~~~~~li~apTG---------sGKT~~~~l~~ 88 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAY----GFEK-PSAIQQRAIIPCIKGYDVIAQAQSG---------TGKTATFAISI 88 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEECCCSS---------HHHHHHHHHHH
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHHHHHH
Confidence 34556678899999999999999875 7875 8999999999999999999999998 99999999999
Q ss_pred HHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccc
Q 004428 303 LNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRF 382 (754)
Q Consensus 303 LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf 382 (754)
++++... ...+++|||+|||+||.|+.+.+.+++.... .+.
T Consensus 89 l~~l~~~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~ 129 (237)
T 3bor_A 89 LQQLEIE--------------------------------FKETQALVLAPTRELAQQIQKVILALGDYMG-------ATC 129 (237)
T ss_dssp HHHCCTT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCE
T ss_pred HHHHHhc--------------------------------CCCceEEEEECcHHHHHHHHHHHHHHhhhcC-------ceE
Confidence 9988422 1257899999999999999999999875431 122
Q ss_pred ccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH
Q 004428 383 CDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL 462 (754)
Q Consensus 383 ~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL 462 (754)
...+|+... .-....+ .. ..++|||+||++|
T Consensus 130 ~~~~g~~~~---------------------------------------------~~~~~~l--~~--~~~~Ilv~Tp~~l 160 (237)
T 3bor_A 130 HACIGGTNV---------------------------------------------RNEMQKL--QA--EAPHIVVGTPGRV 160 (237)
T ss_dssp EEECC--------------------------------------------------------------CCCSEEEECHHHH
T ss_pred EEEECCCch---------------------------------------------HHHHHHH--hc--CCCCEEEECHHHH
Confidence 223333210 0000111 11 2489999999999
Q ss_pred HHHHhhhhcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEE
Q 004428 463 HQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVL 541 (754)
Q Consensus 463 r~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTll 541 (754)
..++.. ....++.+.++||||||+|+..+ ...+..|+..+ |.. +|+|+
T Consensus 161 ~~~l~~-------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---~~~---------------------~~~i~ 209 (237)
T 3bor_A 161 FDMLNR-------RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL---NTS---------------------IQVVL 209 (237)
T ss_dssp HHHHHT-------TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS---CTT---------------------CEEEE
T ss_pred HHHHHh-------CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhC---CCC---------------------CeEEE
Confidence 998862 34568899999999999998544 45566666554 332 89999
Q ss_pred EcCCCCHHHHHHHHHhhcCC
Q 004428 542 LSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 542 FSAt~~peinsL~~~~~~N~ 561 (754)
||||+++++..+++.++.|+
T Consensus 210 ~SAT~~~~~~~~~~~~l~~p 229 (237)
T 3bor_A 210 LSATMPTDVLEVTKKFMRDP 229 (237)
T ss_dssp ECSSCCHHHHHHHHHHCSSC
T ss_pred EEEecCHHHHHHHHHHCCCC
Confidence 99999999999999999885
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=227.39 Aligned_cols=208 Identities=13% Similarity=0.218 Sum_probs=156.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|.+++|++.+++++.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|++|+++++.+
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~~~~l~~l~~ 68 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTL----RFYK-PTEIQERIIPGALRGESMVGQSQTG---------TGKTHAYLLPIMEKIKP 68 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHHTCCEEEECCSS---------HHHHHHHHHHHHHHCCT
T ss_pred CCCHhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------ChHHHHHHHHHHHHHHh
Confidence 35799999999999999874 7776 8999999999999999999999998 99999999999999853
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+ ..+++|||+|||+||.|+.+.+.++...... ....+....+|+
T Consensus 69 ~~--------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~---~~~~~~~~~~g~ 113 (219)
T 1q0u_A 69 ER--------------------------------AEVQAVITAPTRELATQIYHETLKITKFCPK---DRMIVARCLIGG 113 (219)
T ss_dssp TS--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHHTTSCG---GGCCCEEEECCC
T ss_pred Cc--------------------------------CCceEEEEcCcHHHHHHHHHHHHHHhhhccc---ccceEEEEEeCC
Confidence 21 2478999999999999999999988643210 001122222332
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.. .. +..+.+. .++||||+||++|..++..
T Consensus 114 ~~-----------------------------------------------~~-~~~~~~~--~~~~Iiv~Tp~~l~~~l~~ 143 (219)
T 1q0u_A 114 TD-----------------------------------------------KQ-KALEKLN--VQPHIVIGTPGRINDFIRE 143 (219)
T ss_dssp SH-----------------------------------------------HH-HTTCCCS--SCCSEEEECHHHHHHHHHT
T ss_pred CC-----------------------------------------------HH-HHHHHcC--CCCCEEEeCHHHHHHHHHc
Confidence 21 01 1111111 3689999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
....++.+.++||||||.|+. ++...+..|+. .+|+. +|+++||||++
T Consensus 144 -------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~---~~~~~---------------------~~~l~~SAT~~ 192 (219)
T 1q0u_A 144 -------QALDVHTAHILVVDEADLMLDMGFITDVDQIAA---RMPKD---------------------LQMLVFSATIP 192 (219)
T ss_dssp -------TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHH---TSCTT---------------------CEEEEEESCCC
T ss_pred -------CCCCcCcceEEEEcCchHHhhhChHHHHHHHHH---hCCcc---------------------cEEEEEecCCC
Confidence 334589999999999999984 33445555544 44543 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEE
Q 004428 548 PEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 548 peinsL~~~~~~N~~G~Vkv 567 (754)
+++..+++.++.|+ ..|.+
T Consensus 193 ~~~~~~~~~~~~~p-~~~~~ 211 (219)
T 1q0u_A 193 EKLKPFLKKYMENP-TFVHV 211 (219)
T ss_dssp GGGHHHHHHHCSSC-EEEEC
T ss_pred HHHHHHHHHHcCCC-eEEEe
Confidence 99999999999985 34544
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=227.02 Aligned_cols=205 Identities=21% Similarity=0.234 Sum_probs=156.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
+...+|++++|++.+++++.+. |+.. |+|+|++++|.+++++|++++++|| +|||.+|++|+++++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~li~a~TG---------sGKT~~~~~~~l~~l 87 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEA----QYRL-VTEIQKQTIGLALQGKDVLGAAKTG---------SGKTLAFLVPVLEAL 87 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHT----TCCB-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHH
T ss_pred cccCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEEeCCC---------CcHHHHHHHHHHHHH
Confidence 3467799999999999999874 7765 8999999999999999999999998 899999999999999
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
++.+. .....+++|||+|||+||.|+.+.+.++..... .+....+
T Consensus 88 ~~~~~----------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~~~~ 132 (236)
T 2pl3_A 88 YRLQW----------------------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD-------FSAGLII 132 (236)
T ss_dssp HHTTC----------------------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS-------CCEEEEC
T ss_pred Hhhcc----------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC-------eeEEEEE
Confidence 86421 001257899999999999999999999865321 1111122
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. .... ..+.. .++||||+||++|..++
T Consensus 133 g~~-----------------------------------------------~~~~-~~~~~---~~~~iiv~Tp~~l~~~l 161 (236)
T 2pl3_A 133 GGK-----------------------------------------------DLKH-EAERI---NNINILVCTPGRLLQHM 161 (236)
T ss_dssp CC-------------------------------------------------CHH-HHHHH---TTCSEEEECHHHHHHHH
T ss_pred CCC-----------------------------------------------CHHH-HHHhC---CCCCEEEECHHHHHHHH
Confidence 221 1111 11111 46899999999999988
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
.. .....++.+.++||||||+|+. ++...+..|+. .+|.. +|+++||||
T Consensus 162 ~~------~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~---~~~~~---------------------~~~l~~SAT 211 (236)
T 2pl3_A 162 DE------TVSFHATDLQMLVLDEADRILDMGFADTMNAVIE---NLPKK---------------------RQTLLFSAT 211 (236)
T ss_dssp HH------CSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHH---TSCTT---------------------SEEEEEESS
T ss_pred Hh------cCCcccccccEEEEeChHHHhcCCcHHHHHHHHH---hCCCC---------------------CeEEEEEee
Confidence 63 1234588999999999999984 33445555544 44543 899999999
Q ss_pred CCHHHHHHHHHhhcCC
Q 004428 546 PNPEINAFFNHHCANY 561 (754)
Q Consensus 546 ~~peinsL~~~~~~N~ 561 (754)
+++.+..+++.++.|+
T Consensus 212 ~~~~~~~~~~~~~~~p 227 (236)
T 2pl3_A 212 QTKSVKDLARLSLKNP 227 (236)
T ss_dssp CCHHHHHHHHHSCSSC
T ss_pred CCHHHHHHHHHhCCCC
Confidence 9999999999999885
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=230.56 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=156.4
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHH
Q 004428 227 KDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHI 306 (754)
Q Consensus 227 ~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv 306 (754)
....+|.+++|++.+++++..+ |+.. |+|+|++++|.+++++|++++++|| +|||.+|++++++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~i~~~~~~lv~a~TG---------sGKT~~~~~~il~~l 105 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQL----GWTK-PTKIQIEAIPLALQGRDIIGLAETG---------SGKTGAFALPILNAL 105 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHH
T ss_pred cccCCHHHcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHhCCCCEEEEcCCC---------CCchhHhHHHHHHHH
Confidence 3457899999999999999875 7765 8999999999999999999999998 899999999999999
Q ss_pred hhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccccccc
Q 004428 307 FRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEF 386 (754)
Q Consensus 307 ~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~ef 386 (754)
.+.. .++++|||+|||+||.|+.+.+.+++.... .+....+
T Consensus 106 ~~~~--------------------------------~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-------~~~~~~~ 146 (249)
T 3ber_A 106 LETP--------------------------------QRLFALVLTPTRELAFQISEQFEALGSSIG-------VQSAVIV 146 (249)
T ss_dssp HHSC--------------------------------CSSCEEEECSSHHHHHHHHHHHHHHHGGGT-------CCEEEEC
T ss_pred hcCC--------------------------------CCceEEEEeCCHHHHHHHHHHHHHHhccCC-------eeEEEEE
Confidence 7541 257899999999999999999998854321 1112222
Q ss_pred CCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHH
Q 004428 387 GTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKM 466 (754)
Q Consensus 387 g~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI 466 (754)
|+. ...+....+. .+++||||||++|..++
T Consensus 147 g~~-----------------------------------------------~~~~~~~~~~---~~~~I~v~Tp~~l~~~l 176 (249)
T 3ber_A 147 GGI-----------------------------------------------DSMSQSLALA---KKPHIIIATPGRLIDHL 176 (249)
T ss_dssp TTS-----------------------------------------------CHHHHHHHHH---TCCSEEEECHHHHHHHH
T ss_pred CCC-----------------------------------------------ChHHHHHHhc---CCCCEEEECHHHHHHHH
Confidence 221 1111111221 47999999999999988
Q ss_pred hhhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCC
Q 004428 467 TKAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYH 545 (754)
Q Consensus 467 ~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt 545 (754)
.. .....++.+.++||||||+|+. ++...+..|+. .+|.. +|+|+||||
T Consensus 177 ~~------~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~---~~~~~---------------------~~~l~~SAT 226 (249)
T 3ber_A 177 EN------TKGFNLRALKYLVMDEADRILNMDFETEVDKILK---VIPRD---------------------RKTFLFSAT 226 (249)
T ss_dssp HH------STTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH---SSCSS---------------------SEEEEEESS
T ss_pred Hc------CCCcCccccCEEEEcChhhhhccChHHHHHHHHH---hCCCC---------------------CeEEEEecc
Confidence 63 1223489999999999999984 33445555554 44543 899999999
Q ss_pred CCHHHHHHHHHhhcCC
Q 004428 546 PNPEINAFFNHHCANY 561 (754)
Q Consensus 546 ~~peinsL~~~~~~N~ 561 (754)
+++++..+++.++.|+
T Consensus 227 ~~~~v~~~~~~~l~~p 242 (249)
T 3ber_A 227 MTKKVQKLQRAALKNP 242 (249)
T ss_dssp CCHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHCCCC
Confidence 9999999999999985
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-26 Score=228.20 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=159.7
Q ss_pred cccCCCCCCcCCC----CCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHH
Q 004428 223 ECFLKDDNLYSDY----GLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETY 298 (754)
Q Consensus 223 ~~~~~~~~~f~~l----~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay 298 (754)
..+|.++.+|.++ +|++.|++++.+. |+.. |||+|++++|.+++++|++++++|| +|||.+|
T Consensus 18 ~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~l~~a~TG---------sGKT~~~ 83 (245)
T 3dkp_A 18 TDLPDPIATFQQLDQEYKINSRLLQNILDA----GFQM-PTPIQMQAIPVMLHGRELLASAPTG---------SGKTLAF 83 (245)
T ss_dssp SSCCCCCSSHHHHHHHHCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHH
T ss_pred CCCCCcccCHHHhhhccCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHH
Confidence 4566778888877 8999999999875 8876 8999999999999999999999998 8999999
Q ss_pred HHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccc
Q 004428 299 LMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEH 378 (754)
Q Consensus 299 ~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~n 378 (754)
++|+++++.+.. -..++||||+|||+||.|+.+.+.++.....
T Consensus 84 ~l~~l~~l~~~~-------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~------ 126 (245)
T 3dkp_A 84 SIPILMQLKQPA-------------------------------NKGFRALIISPTRELASQIHRELIKISEGTG------ 126 (245)
T ss_dssp HHHHHHHHCSCC-------------------------------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSC------
T ss_pred HHHHHHHHhhcc-------------------------------cCCceEEEEeCCHHHHHHHHHHHHHHhcccC------
Confidence 999999985421 1247899999999999999999999865432
Q ss_pred ccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeC
Q 004428 379 IDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVAS 458 (754)
Q Consensus 379 k~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVAS 458 (754)
.+....+|+.... . .+. .. ...++||||||
T Consensus 127 -~~~~~~~~~~~~~-------------------------------------~------~~~----~~--~~~~~~I~v~T 156 (245)
T 3dkp_A 127 -FRIHMIHKAAVAA-------------------------------------K------KFG----PK--SSKKFDILVTT 156 (245)
T ss_dssp -CCEECCCHHHHHH-------------------------------------T------TTS----TT--SCCCCCEEEEC
T ss_pred -ceEEEEecCccHH-------------------------------------H------Hhh----hh--hcCCCCEEEEC
Confidence 1111112211000 0 000 00 01468999999
Q ss_pred chhHHHHHhhhhcccccCcccCCceeEEEEecchhhhh----cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCC
Q 004428 459 PINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILM----QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSR 534 (754)
Q Consensus 459 PlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLm----QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak 534 (754)
|++|..++.. ......|+.+.++||||||.|+. +++..+..++..+. +.
T Consensus 157 p~~l~~~l~~-----~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~--~~-------------------- 209 (245)
T 3dkp_A 157 PNRLIYLLKQ-----DPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT--SH-------------------- 209 (245)
T ss_dssp HHHHHHHHHS-----SSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC--CT--------------------
T ss_pred HHHHHHHHHh-----CCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC--CC--------------------
Confidence 9999999863 12234589999999999999984 34455555554431 11
Q ss_pred ccccEEEEcCCCCHHHHHHHHHhhcCCCceEEE
Q 004428 535 FYRQTVLLSYHPNPEINAFFNHHCANYQGKVKL 567 (754)
Q Consensus 535 ~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv 567 (754)
.+|+++||||+++++..+++.++.|+ ..|.+
T Consensus 210 -~~~~~~~SAT~~~~v~~~~~~~l~~p-~~i~~ 240 (245)
T 3dkp_A 210 -KVRRAMFSATFAYDVEQWCKLNLDNV-ISVSI 240 (245)
T ss_dssp -TCEEEEEESSCCHHHHHHHHHHSSSC-EEEEE
T ss_pred -CcEEEEEeccCCHHHHHHHHHhCCCC-EEEEe
Confidence 27999999999999999999999885 34443
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=225.68 Aligned_cols=206 Identities=17% Similarity=0.173 Sum_probs=154.9
Q ss_pred CcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHH
Q 004428 222 GECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMH 301 (754)
Q Consensus 222 ~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh 301 (754)
+...|.+..+|.+++|++.+.+.+.+. |+.. |+|+|++++|.+++++|++++++|| +|||.+|+++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~l~~a~TG---------sGKT~~~~l~ 81 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAA----GFER-PSPVQLKAIPLGRCGLDLIVQAKSG---------TGKTCVFSTI 81 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHH
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CcHHHHHHHH
Confidence 345566678899999999999999874 7865 8999999999999999999999998 8999999999
Q ss_pred HHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccc
Q 004428 302 SLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDR 381 (754)
Q Consensus 302 ~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~R 381 (754)
++.++.... ..+++|||+|||+||.|+.+.+.++......+ +
T Consensus 82 ~l~~l~~~~--------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~------~ 123 (230)
T 2oxc_A 82 ALDSLVLEN--------------------------------LSTQILILAPTREIAVQIHSVITAIGIKMEGL------E 123 (230)
T ss_dssp HHHHCCTTS--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC------C
T ss_pred HHHHHHhcC--------------------------------CCceEEEEeCCHHHHHHHHHHHHHHhcccCCc------e
Confidence 999985320 24789999999999999999999986432101 1
Q ss_pred cccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchh
Q 004428 382 FCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPIN 461 (754)
Q Consensus 382 f~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlg 461 (754)
....+| | ..... ..+.. .++||||+||++
T Consensus 124 ~~~~~g--------------------------------------~---------~~~~~-~~~~~---~~~~Iiv~Tp~~ 152 (230)
T 2oxc_A 124 CHVFIG--------------------------------------G---------TPLSQ-DKTRL---KKCHIAVGSPGR 152 (230)
T ss_dssp EEEECT--------------------------------------T---------SCHHH-HHHHT---TSCSEEEECHHH
T ss_pred EEEEeC--------------------------------------C---------CCHHH-HHHhc---cCCCEEEECHHH
Confidence 111122 1 11111 12222 468999999999
Q ss_pred HHHHHhhhhcccccCcccCCceeEEEEecchhhh-hc-CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccE
Q 004428 462 LHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL-MQ-NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQT 539 (754)
Q Consensus 462 Lr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL-mQ-Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQT 539 (754)
|..++.. ....++.+.++||||||+|+ ++ ++..+..|+..+ |.. +|+
T Consensus 153 l~~~~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~---~~~---------------------~~~ 201 (230)
T 2oxc_A 153 IKQLIEL-------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL---PAS---------------------KQM 201 (230)
T ss_dssp HHHHHHT-------TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS---CSS---------------------CEE
T ss_pred HHHHHhc-------CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhC---CCC---------------------CeE
Confidence 9998862 33458899999999999998 43 456677776654 432 799
Q ss_pred EEEcCCCCHHHHHHHHHhhcCC
Q 004428 540 VLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 540 llFSAt~~peinsL~~~~~~N~ 561 (754)
|+||||+++++..++..++.|+
T Consensus 202 l~lSAT~~~~~~~~~~~~~~~p 223 (230)
T 2oxc_A 202 LAVSATYPEFLANALTKYMRDP 223 (230)
T ss_dssp EEEESCCCHHHHHHHTTTCSSC
T ss_pred EEEEeccCHHHHHHHHHHcCCC
Confidence 9999999999999999988875
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=216.68 Aligned_cols=199 Identities=22% Similarity=0.342 Sum_probs=154.2
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
++|++++|++.|++++.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|++|+++++...
T Consensus 3 ~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~apTG---------sGKT~~~~~~~~~~~~~~ 68 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEM----GWEK-PSPIQEESIPIALSGRDILARAKNG---------TGKSGAYLIPLLERLDLK 68 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTT----TCCS-CCHHHHHHHHHHHTTCCEEEECCSS---------STTHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHccCCCEEEECCCC---------CchHHHHHHHHHHHhccc
Confidence 5699999999999999874 7765 8999999999999999999999998 899999999999988532
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
...+++|||+|||+||.|+.+.+.++...... .+....+|+.
T Consensus 69 --------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~------~~~~~~~g~~ 110 (206)
T 1vec_A 69 --------------------------------KDNIQAMVIVPTRELALQVSQICIQVSKHMGG------AKVMATTGGT 110 (206)
T ss_dssp --------------------------------SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS------CCEEEECSSS
T ss_pred --------------------------------CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC------ceEEEEeCCc
Confidence 12478999999999999999999998653210 1111122211
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.......++. .+++|||+||++|..++..
T Consensus 111 -----------------------------------------------~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~- 139 (206)
T 1vec_A 111 -----------------------------------------------NLRDDIMRLD---DTVHVVIATPGRILDLIKK- 139 (206)
T ss_dssp -----------------------------------------------CHHHHHHHTT---SCCSEEEECHHHHHHHHHT-
T ss_pred -----------------------------------------------cHHHHHHhcC---CCCCEEEeCHHHHHHHHHc-
Confidence 1111112221 4689999999999998862
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
....++.+.++||||||.|+..+ +..+..++..+ |+. +|+++||||+++
T Consensus 140 ------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---~~~---------------------~~~l~~SAT~~~ 189 (206)
T 1vec_A 140 ------GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL---PKN---------------------RQILLYSATFPL 189 (206)
T ss_dssp ------TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS---CTT---------------------CEEEEEESCCCH
T ss_pred ------CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhC---Ccc---------------------ceEEEEEeeCCH
Confidence 34568999999999999998543 45556665543 432 899999999999
Q ss_pred HHHHHHHHhhcCC
Q 004428 549 EINAFFNHHCANY 561 (754)
Q Consensus 549 einsL~~~~~~N~ 561 (754)
++..+++.++.|+
T Consensus 190 ~~~~~~~~~l~~p 202 (206)
T 1vec_A 190 SVQKFMNSHLEKP 202 (206)
T ss_dssp HHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999885
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-26 Score=258.13 Aligned_cols=319 Identities=12% Similarity=0.034 Sum_probs=185.2
Q ss_pred CCHHHHHHhhhhhC-----CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccc
Q 004428 258 HSSKQRSFFSLCNS-----YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGIL 332 (754)
Q Consensus 258 pTpiQ~~~ip~i~~-----y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~ 332 (754)
++|.|.++++.+.. .++++.++.|| +|||.+ +++++.++++..-.
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TG---------sGKT~~-~~~~~~~l~~~~~~-------------------- 228 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATG---------TGKTVV-AFQISWKLWSARWN-------------------- 228 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTT---------SCHHHH-HHHHHHHHHHTTCC--------------------
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCC---------CChHHH-HHHHHHHHHhcccc--------------------
Confidence 79999999998875 46689999998 899999 56677777654200
Q ss_pred cccccccCCCCCceEEEEccchhHHHHHH-HHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 333 IGDAFLDRGFTRPKVLILLPLKSIALNVV-KRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 333 ~~~~~RDQGftRPkVLIL~PTRelA~qIv-~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
+......++||||+||++||.|+. +.+..+.....
T Consensus 229 -----~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~--------------------------------------- 264 (590)
T 3h1t_A 229 -----RTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARH--------------------------------------- 264 (590)
T ss_dssp -----SSCSSSCCCEEEEEC-----------CCTTTCSSEE---------------------------------------
T ss_pred -----cccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhh---------------------------------------
Confidence 001124589999999999999998 55544322110
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
...+ ..+ -.+.+|+|+||.+|...+... +......+..+.++|||||
T Consensus 265 -----------~~~~--------------~~~-----~~~~~I~v~T~~~l~~~~~~~---~~~~~~~~~~~~lvIiDEa 311 (590)
T 3h1t_A 265 -----------KIEG--------------GKV-----VKSREIYFAIYQSIASDERRP---GLYKEFPQDFFDLIIIDEC 311 (590)
T ss_dssp -----------ECCC----------------C-----CSSCSEEEEEGGGC------C---CGGGGSCTTSCSEEEESCC
T ss_pred -----------hhhc--------------cCC-----CCCCcEEEEEhhhhccccccc---cccccCCCCccCEEEEECC
Confidence 0000 000 135799999999999876411 0011112567899999999
Q ss_pred hhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEee-c
Q 004428 492 DIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLAC-E 570 (754)
Q Consensus 492 D~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~-~ 570 (754)
|++.......+..|++++ |. ++.|+||||.......-...++.++.-...+.. .
T Consensus 312 H~~~~~~~~~~~~il~~~---~~----------------------~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i 366 (590)
T 3h1t_A 312 HRGSARDNSNWREILEYF---EP----------------------AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGI 366 (590)
T ss_dssp C---------CHHHHHHS---TT----------------------SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHH
T ss_pred ccccccchHHHHHHHHhC---Cc----------------------ceEEEeccccccccchhHHHHcCCceEecCHHHHh
Confidence 999743223344555554 21 679999999774322112222222110000000 0
Q ss_pred ccCcccccccceeEEEEEec--------------------------cCccc--chhHHHHHHHHHHHhHHhhh-cCCCcE
Q 004428 571 YKGVLPKVLLNVRQIYERFN--------------------------ADSIA--KADDARLEYFTKKVFPKIKD-SIQGGI 621 (754)
Q Consensus 571 ~~g~i~~v~~~I~Q~f~r~~--------------------------~~s~~--~~~d~Rf~yF~~~iLp~l~~-~~~~~t 621 (754)
..|.+ ....-.-...+ ..... -....|.......+...+.. ...+++
T Consensus 367 ~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~ 442 (590)
T 3h1t_A 367 DDGFL----APYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKT 442 (590)
T ss_dssp HHTSS----CCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEE
T ss_pred hCCcc----CCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccE
Confidence 00100 00000000000 00000 00122333333333332332 235799
Q ss_pred EEEecchhcHHHHHHHHHhCCCc--------eEeecCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCccccCCCC
Q 004428 622 MLFLSSYFEFVRLRNFLKSQNAS--------FCLLGDYTEPSDISRARVWFFEGKRK---MILYTERSHFYHRYKIRGIQ 690 (754)
Q Consensus 622 LIFv~Sy~d~vrlrn~Lk~~~~~--------f~~Ihey~sq~~r~rar~~F~~G~~~---ILL~TErahffRr~dIkgV~ 690 (754)
||||++...+.+|...|++.+.. +..+|+.+++ +|.+++..|++|+.+ ||++|+.+. +|+||++|+
T Consensus 443 lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~--~GiDip~v~ 519 (590)
T 3h1t_A 443 IVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLT--TGVDAPTCK 519 (590)
T ss_dssp EEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTT--TTCCCTTEE
T ss_pred EEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhh--cCccchhee
Confidence 99999999999999999876443 6789998765 799999999999877 899999999 999999999
Q ss_pred eEEEccCCCCCCchhhhccccCCCC
Q 004428 691 NLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 691 ~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
+||+|++|.++..|.|++||++|.+
T Consensus 520 ~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 520 NVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp EEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred EEEEEecCCChHHHHHHHhhhcccC
Confidence 9999999999999999999999965
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=219.21 Aligned_cols=203 Identities=18% Similarity=0.258 Sum_probs=156.7
Q ss_pred ccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHH
Q 004428 224 CFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSL 303 (754)
Q Consensus 224 ~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~L 303 (754)
..++...+|.+++|++.+++.+.+. |+.. |+|+|+++++.+++++|++++++|| +|||.+|+++++
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~~pTG---------sGKT~~~~~~~l 73 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGY----GFEE-PSAIQQRAIMPIIEGHDVLAQAQSG---------TGKTGTFSIAAL 73 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHH
T ss_pred ccCcccCChhhcCCCHHHHHHHHHC----CCCC-CcHHHHHHHHHHhcCCCEEEECCCC---------CcHHHHHHHHHH
Confidence 4556678899999999999999875 7765 8999999999999999999999998 899999999999
Q ss_pred HHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccc
Q 004428 304 NHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFC 383 (754)
Q Consensus 304 NHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~ 383 (754)
+++... ...+++|||+|||+||.|+.+.+.+++.... .+..
T Consensus 74 ~~l~~~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-------~~~~ 114 (224)
T 1qde_A 74 QRIDTS--------------------------------VKAPQALMLAPTRELALQIQKVVMALAFHMD-------IKVH 114 (224)
T ss_dssp HHCCTT--------------------------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-------CCEE
T ss_pred HHHhcc--------------------------------CCCceEEEEECCHHHHHHHHHHHHHHhcccC-------ceEE
Confidence 988432 1357899999999999999999999875431 1222
Q ss_pred cccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHH
Q 004428 384 DEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLH 463 (754)
Q Consensus 384 ~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr 463 (754)
..+|+.. ... ..+. +..++|||+||++|.
T Consensus 115 ~~~g~~~-----------------------------------------------~~~-~~~~---~~~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 115 ACIGGTS-----------------------------------------------FVE-DAEG---LRDAQIVVGTPGRVF 143 (224)
T ss_dssp EECC-------------------------------------------------------------CTTCSEEEECHHHHH
T ss_pred EEeCCcc-----------------------------------------------hHH-HHhc---CCCCCEEEECHHHHH
Confidence 2233221 000 1111 134899999999999
Q ss_pred HHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE
Q 004428 464 QKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL 542 (754)
Q Consensus 464 ~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF 542 (754)
.++.. ....++.+.++||||||.|+..+| ..+..++.. +|.. +|+++|
T Consensus 144 ~~~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~---~~~~---------------------~~~i~l 192 (224)
T 1qde_A 144 DNIQR-------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL---LPPT---------------------TQVVLL 192 (224)
T ss_dssp HHHHT-------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH---SCTT---------------------CEEEEE
T ss_pred HHHHh-------CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHh---CCcc---------------------CeEEEE
Confidence 98862 244589999999999999985444 345555544 3432 799999
Q ss_pred cCCCCHHHHHHHHHhhcCC
Q 004428 543 SYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 543 SAt~~peinsL~~~~~~N~ 561 (754)
|||+++++..+++.++.|+
T Consensus 193 SAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 193 SATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp ESSCCHHHHHHHHHHCSSC
T ss_pred EeecCHHHHHHHHHHCCCC
Confidence 9999999999999999885
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=214.32 Aligned_cols=198 Identities=20% Similarity=0.307 Sum_probs=154.1
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcC
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTR 310 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr 310 (754)
+|.+++|++.+++.+.+. |+.. |+|+|+++++.+++++|++.+++|| +|||.+|++++++++...+
T Consensus 2 ~f~~~~l~~~l~~~l~~~----~~~~-~~~~Q~~~i~~~~~~~~~li~~~TG---------sGKT~~~~~~~~~~l~~~~ 67 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGR----GLTT-PTPIQAAALPLALEGKDLIGQARTG---------TGKTLAFALPIAERLAPSQ 67 (207)
T ss_dssp CGGGSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHCCCCC
T ss_pred ChhhcCCCHHHHHHHHHc----CCCC-CCHHHHHHHHHHcCCCCEEEECCCC---------ChHHHHHHHHHHHHHhhcc
Confidence 589999999999999874 7765 8999999999999999999999998 8999999999999986431
Q ss_pred CccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCc
Q 004428 311 DLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKK 390 (754)
Q Consensus 311 ~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~ 390 (754)
. + -..|++|||+|||+||.|+.+.+.++.+.. +....+|+.
T Consensus 68 ~--------------------------~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~---------~~~~~~~~~- 108 (207)
T 2gxq_A 68 E--------------------------R---GRKPRALVLTPTRELALQVASELTAVAPHL---------KVVAVYGGT- 108 (207)
T ss_dssp C--------------------------T---TCCCSEEEECSSHHHHHHHHHHHHHHCTTS---------CEEEECSSS-
T ss_pred c--------------------------c---CCCCcEEEEECCHHHHHHHHHHHHHHhhcc---------eEEEEECCC-
Confidence 1 0 125899999999999999999999986532 122233322
Q ss_pred cccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhh
Q 004428 391 EEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470 (754)
Q Consensus 391 ~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e 470 (754)
......-.+. .+++|+|+||++|..++..
T Consensus 109 ----------------------------------------------~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~-- 137 (207)
T 2gxq_A 109 ----------------------------------------------GYGKQKEALL---RGADAVVATPGRALDYLRQ-- 137 (207)
T ss_dssp ----------------------------------------------CSHHHHHHHH---HCCSEEEECHHHHHHHHHH--
T ss_pred ----------------------------------------------ChHHHHHHhh---CCCCEEEECHHHHHHHHHc--
Confidence 1111111122 3689999999999998863
Q ss_pred cccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 471 ENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 471 ~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
....++.+.++||||||.|+..+| ..+..++.. +|.. +|+++||||+++.
T Consensus 138 -----~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~---~~~~---------------------~~~i~~SAT~~~~ 188 (207)
T 2gxq_A 138 -----GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSA---TPPS---------------------RQTLLFSATLPSW 188 (207)
T ss_dssp -----TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHT---SCTT---------------------SEEEEECSSCCHH
T ss_pred -----CCcchhhceEEEEEChhHhhccchHHHHHHHHHh---CCcc---------------------CeEEEEEEecCHH
Confidence 234589999999999999985444 455555543 4432 8999999999999
Q ss_pred HHHHHHHhhcCC
Q 004428 550 INAFFNHHCANY 561 (754)
Q Consensus 550 insL~~~~~~N~ 561 (754)
+..+++.++.|+
T Consensus 189 ~~~~~~~~~~~p 200 (207)
T 2gxq_A 189 AKRLAERYMKNP 200 (207)
T ss_dssp HHHHHHHHCSSC
T ss_pred HHHHHHHHcCCC
Confidence 999999999885
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=245.65 Aligned_cols=295 Identities=11% Similarity=0.041 Sum_probs=198.0
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|+++++.++++.+++.++.|| +|||.+|+++++..
T Consensus 94 l~~~Q~~ai~~i~~~~~~ll~~~TG---------sGKT~~~l~~i~~~-------------------------------- 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDKRGCIVLPTG---------SGKTHVAMAAINEL-------------------------------- 132 (472)
T ss_dssp BCHHHHHHHHHHTTTTEEEEECCTT---------SCHHHHHHHHHHHH--------------------------------
T ss_pred cCHHHHHHHHHHHhcCCEEEEeCCC---------CCHHHHHHHHHHHc--------------------------------
Confidence 7999999999999999999999998 89999999987642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..++|||||||+||.|+.+.+.++ +.. +. ..
T Consensus 133 ------~~~~Lvl~P~~~L~~Q~~~~~~~~-~~~---------~v-~~-------------------------------- 163 (472)
T 2fwr_A 133 ------STPTLIVVPTLALAEQWKERLGIF-GEE---------YV-GE-------------------------------- 163 (472)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHGGGG-CGG---------GE-EE--------------------------------
T ss_pred ------CCCEEEEECCHHHHHHHHHHHHhC-CCc---------ce-EE--------------------------------
Confidence 136899999999999999998885 110 01 11
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
+.|... ..++|+|+||..|...+.. +...+.++||||||.+...
T Consensus 164 ------~~g~~~--------------------~~~~Ivv~T~~~l~~~~~~----------~~~~~~liIvDEaH~~~~~ 207 (472)
T 2fwr_A 164 ------FSGRIK--------------------ELKPLTVSTYDSAYVNAEK----------LGNRFMLLIFDEVHHLPAE 207 (472)
T ss_dssp ------BSSSCB--------------------CCCSEEEEEHHHHHHTHHH----------HTTTCSEEEEETGGGTTST
T ss_pred ------ECCCcC--------------------CcCCEEEEEcHHHHHHHHH----------hcCCCCEEEEECCcCCCCh
Confidence 222110 1379999999999876541 2245899999999999855
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH-------------------HHHHHHHHhh
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP-------------------EINAFFNHHC 558 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p-------------------einsL~~~~~ 558 (754)
.|.. +++.+ +. ++.|++|||... .+..+...++
T Consensus 208 ~~~~---~~~~~---~~----------------------~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l 259 (472)
T 2fwr_A 208 SYVQ---IAQMS---IA----------------------PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL 259 (472)
T ss_dssp TTHH---HHHTC---CC----------------------SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC
T ss_pred HHHH---HHHhc---CC----------------------CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC
Confidence 4543 33322 22 578999999972 1222211111
Q ss_pred cCCCc-eEEEeec------ccCcccc-------------cccceeEEEEEec-cCcc-------------cchhHHHHHH
Q 004428 559 ANYQG-KVKLACE------YKGVLPK-------------VLLNVRQIYERFN-ADSI-------------AKADDARLEY 604 (754)
Q Consensus 559 ~N~~G-~Vkv~~~------~~g~i~~-------------v~~~I~Q~f~r~~-~~s~-------------~~~~d~Rf~y 604 (754)
.++.- .+.+... +...... ....+.+.+.... .... ......++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 339 (472)
T 2fwr_A 260 AKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRK 339 (472)
T ss_dssp CSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 11100 0001000 0000000 0000000000000 0000 0001122221
Q ss_pred HHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcc
Q 004428 605 FTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRY 684 (754)
Q Consensus 605 F~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~ 684 (754)
+...+......++||||++......|..+|. +..+|+.+++.+|.+++..|++|+++|||+|+.+. +|+
T Consensus 340 ----l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~--~Gl 408 (472)
T 2fwr_A 340 ----LREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLD--EGI 408 (472)
T ss_dssp ----HHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCC--SSS
T ss_pred ----HHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchh--cCc
Confidence 2122233456899999999999999999884 56799999999999999999999999999999999 999
Q ss_pred ccCCCCeEEEccCCCCCCchhhhccccCCCCCc
Q 004428 685 KIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNM 717 (754)
Q Consensus 685 dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g 717 (754)
||+++++||+|++|.++..|.+++||++|.+.+
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 999999999999999999999999999998755
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=275.36 Aligned_cols=349 Identities=12% Similarity=0.127 Sum_probs=236.4
Q ss_pred CCCCCCCHHHHHHhhhhh-CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 253 GGNDFHSSKQRSFFSLCN-SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 253 g~~~~pTpiQ~~~ip~i~-~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
|+.. ++|+|.++||.++ +.++|++||+|| +|||.++.|+||+.|.+.+..-
T Consensus 76 g~~~-ln~iQs~~~~~al~~~~N~lv~APTG---------sGKTlva~l~il~~l~~~~~~~------------------ 127 (1724)
T 4f92_B 76 GFKT-LNRIQSKLYRAALETDENLLLCAPTG---------AGKTNVALMCMLREIGKHINMD------------------ 127 (1724)
T ss_dssp TCSB-CCHHHHHTHHHHHTCCCCEEEECCTT---------SCCHHHHHHHHHHHHGGGCCTT------------------
T ss_pred CCCC-CCHHHHHHHHHHHcCCCcEEEEeCCc---------chHHHHHHHHHHHHHHhhcccc------------------
Confidence 5665 6899999999876 588999999998 8999999999999998764310
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
.... -.+.|||+++|||+||.|++..+.+.....+ + +....+|+.
T Consensus 128 ---~~~~---~~~~k~lyiaP~kALa~e~~~~l~~~~~~~g-i------~V~~~tGd~---------------------- 172 (1724)
T 4f92_B 128 ---GTIN---VDDFKIIYIAPMRSLVQEMVGSFGKRLATYG-I------TVAELTGDH---------------------- 172 (1724)
T ss_dssp ---SSCC---TTSCEEEEECSSHHHHHHHHHHHHHHHTTTT-C------CEEECCSSC----------------------
T ss_pred ---cccc---CCCCEEEEECCHHHHHHHHHHHHHHHHhhCC-C------EEEEEECCC----------------------
Confidence 0000 1246899999999999999999987543321 1 122222321
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecc
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHA 491 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeA 491 (754)
..+++.+ ..+||||+||.+|..++.. ..+..+|+.|.++||||+
T Consensus 173 -------------------------~~~~~~~------~~~~IlVtTpEkld~llr~-----~~~~~~l~~v~~vIiDEv 216 (1724)
T 4f92_B 173 -------------------------QLCKEEI------SATQIIVCTPEKWDIITRK-----GGERTYTQLVRLIILDEI 216 (1724)
T ss_dssp -------------------------SSCCTTG------GGCSEEEECHHHHHHHTTS-----STTHHHHTTEEEEEETTG
T ss_pred -------------------------CCCcccc------CCCCEEEECHHHHHHHHcC-----CccchhhcCcCEEEEecc
Confidence 1111111 2589999999999766642 123346899999999999
Q ss_pred hhhhhcCch-HHHHHHHHh----ccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhc-CCCceE
Q 004428 492 DIILMQNWS-WLIEVVEQL----NRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCA-NYQGKV 565 (754)
Q Consensus 492 D~mLmQNw~-hv~~Il~~L----n~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~-N~~G~V 565 (754)
|.+-. .-. +++.++..+ ...+. ..|.|++|||++. +..++ +++. +....+
T Consensus 217 H~l~d-~RG~~lE~~l~rl~~~~~~~~~---------------------~~riI~LSATl~N-~~dvA-~wL~~~~~~~~ 272 (1724)
T 4f92_B 217 HLLHD-DRGPVLEALVARAIRNIEMTQE---------------------DVRLIGLSATLPN-YEDVA-TFLRVDPAKGL 272 (1724)
T ss_dssp GGGGS-TTHHHHHHHHHHHHHHHHHHTC---------------------CCEEEEEECSCTT-HHHHH-HHTTCCHHHHE
T ss_pred hhcCC-ccHHHHHHHHHHHHHHHHhCCC---------------------CCcEEEEecccCC-HHHHH-HHhCCCCCCCe
Confidence 85433 222 334343322 11222 2689999999973 34444 3332 211112
Q ss_pred EE-eecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhh-cCCCcEEEEecchhcHHHHHHHHHhC--
Q 004428 566 KL-ACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKD-SIQGGIMLFLSSYFEFVRLRNFLKSQ-- 641 (754)
Q Consensus 566 kv-~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~-~~~~~tLIFv~Sy~d~vrlrn~Lk~~-- 641 (754)
.+ ...+ -..+++|.|.-+.... ...+++..-..+...+.. ...+++||||+|+.++.+++.+|.+.
T Consensus 273 ~~~~~~~------RPvpL~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~ 342 (1724)
T 4f92_B 273 FYFDNSF------RPVPLEQTYVGITEKK----AIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL 342 (1724)
T ss_dssp EECCGGG------CSSCEEEECCEECCCC----HHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHH
T ss_pred EEECCCC------ccCccEEEEeccCCcc----hhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHh
Confidence 21 1111 1235777777665432 234444333333333433 24568999999999999998888541
Q ss_pred -----------------------------------CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCcccc
Q 004428 642 -----------------------------------NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKI 686 (754)
Q Consensus 642 -----------------------------------~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dI 686 (754)
..-++.-|+.+++.+|...-..|++|.++|||||..++ +|+++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa--~GVNl 420 (1724)
T 4f92_B 343 EKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLA--WGVNL 420 (1724)
T ss_dssp HTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHH--HHSCC
T ss_pred hccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhH--hhCCC
Confidence 11256779999999999999999999999999999999 99999
Q ss_pred CCCCeEEE----ccC------CCCCCchhhhccccCCCC---CceEEEEechhcHHHHHHHhC
Q 004428 687 RGIQNLII----YSL------PERKEFYPEIVNMLEGSH---NMTCTVLFSRFDMLRLERIVG 736 (754)
Q Consensus 687 kgV~~VIf----Y~l------P~~pefY~erigrt~ra~---~g~~~~L~sk~D~~~LErIVG 736 (754)
+.+..||. |++ |-.+..|.+|+||+||++ .|.|+.+.++.|......++.
T Consensus 421 Pa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 421 PAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLN 483 (1724)
T ss_dssp CBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTT
T ss_pred CCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHc
Confidence 99888874 554 557888999999999987 588888888777655544443
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=226.88 Aligned_cols=204 Identities=21% Similarity=0.235 Sum_probs=152.1
Q ss_pred CCcCCCC--CCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 230 NLYSDYG--LKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 230 ~~f~~l~--L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
.+|.+++ |++.+++++.+. |+.. |+|+|.+++|.++.++|++++++|| +|||.+|++|+|+++.
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~lv~a~TG---------sGKT~~~~l~~l~~l~ 117 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEM----GFTN-MTEIQHKSIRPLLEGRDLLAAAKTG---------SGKTLAFLIPAVELIV 117 (262)
T ss_dssp GCC-----CCCHHHHHHHHHT----TCCB-CCHHHHHHHHHHHHTCCCEECCCTT---------SCHHHHHHHHHHHHHH
T ss_pred CChhHhccccCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCcEEEEccCC---------CCchHHHHHHHHHHHH
Confidence 4577777 999999999875 8876 8999999999999999999999998 8999999999999998
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
+.+.. . ...+++|||+|||+||.|+++.+.++..... .+....+|
T Consensus 118 ~~~~~-------------------------~---~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~-------~~~~~~~g 162 (262)
T 3ly5_A 118 KLRFM-------------------------P---RNGTGVLILSPTRELAMQTFGVLKELMTHHV-------HTYGLIMG 162 (262)
T ss_dssp HTTCC-------------------------G---GGCCCEEEECSSHHHHHHHHHHHHHHTTTCC-------SCEEEECS
T ss_pred hcccc-------------------------c---cCCceEEEEeCCHHHHHHHHHHHHHHHhhcC-------ceEEEEEC
Confidence 65320 0 0246899999999999999999999875432 11112222
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .......++. .+++|||+||++|..++.
T Consensus 163 ~~-----------------------------------------------~~~~~~~~~~---~~~~Iiv~Tp~~l~~~~~ 192 (262)
T 3ly5_A 163 GS-----------------------------------------------NRSAEAQKLG---NGINIIVATPGRLLDHMQ 192 (262)
T ss_dssp SS-----------------------------------------------CHHHHHHHHH---HCCSEEEECHHHHHHHHH
T ss_pred CC-----------------------------------------------CHHHHHHHhc---CCCCEEEEcHHHHHHHHH
Confidence 21 1111122222 358999999999999886
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. .....++.+.++||||||+|+. ++...+..|+..+ |.. +|+|+||||+
T Consensus 193 ~------~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~---~~~---------------------~q~l~~SAT~ 242 (262)
T 3ly5_A 193 N------TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL---PTR---------------------RQTMLFSATQ 242 (262)
T ss_dssp H------CTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS---CSS---------------------SEEEEECSSC
T ss_pred c------cCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC---CCC---------------------CeEEEEEecC
Confidence 3 1223588999999999999984 4445666666554 443 8999999999
Q ss_pred CHHHHHHHHHhhcCCC
Q 004428 547 NPEINAFFNHHCANYQ 562 (754)
Q Consensus 547 ~peinsL~~~~~~N~~ 562 (754)
++++..+++.++++.+
T Consensus 243 ~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 243 TRKVEDLARISLKKEP 258 (262)
T ss_dssp CHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHcCCCC
Confidence 9999999998887653
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=245.84 Aligned_cols=270 Identities=10% Similarity=0.068 Sum_probs=183.2
Q ss_pred CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEE
Q 004428 271 SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLIL 350 (754)
Q Consensus 271 ~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL 350 (754)
.++|++.+++|| +|||.+|++++|+++++. .++||||
T Consensus 1 kg~~~lv~a~TG---------sGKT~~~l~~~l~~~~~~----------------------------------g~~~lvl 37 (431)
T 2v6i_A 1 KRELTVLDLHPG---------AGKTRRVLPQLVREAVKK----------------------------------RLRTVIL 37 (431)
T ss_dssp -CCEEEEECCTT---------SCTTTTHHHHHHHHHHHT----------------------------------TCCEEEE
T ss_pred CCCEEEEEcCCC---------CCHHHHHHHHHHHHHHhC----------------------------------CCCEEEE
Confidence 378999999998 899999999999988632 2689999
Q ss_pred ccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCC
Q 004428 351 LPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDD 430 (754)
Q Consensus 351 ~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD 430 (754)
+|||+||.|+.+.+..+ .+. + .+ |.
T Consensus 38 ~Pt~~La~Q~~~~~~~~-------~v~----~---~~--------------------------------------~~--- 62 (431)
T 2v6i_A 38 APTRVVASEMYEALRGE-------PIR----Y---MT--------------------------------------PA--- 62 (431)
T ss_dssp ESSHHHHHHHHHHTTTS-------CEE----E---C--------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCC-------eEE----E---Ee--------------------------------------cC---
Confidence 99999999998766411 010 0 01 10
Q ss_pred cccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhc
Q 004428 431 NFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLN 510 (754)
Q Consensus 431 ~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln 510 (754)
+ .. .-+ .+.-+.+.|.+.|...+-. ...|+.+.++||||||++-+..+..+..+....
T Consensus 63 -----~--~~----~~~--~~~~~~~~~~~~l~~~l~~--------~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~- 120 (431)
T 2v6i_A 63 -----V--QS----ERT--GNEIVDFMCHSTFTMKLLQ--------GVRVPNYNLYIMDEAHFLDPASVAARGYIETRV- 120 (431)
T ss_dssp -------------------CCCSEEEEEHHHHHHHHHH--------TCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-
T ss_pred -----c--cc----cCC--CCceEEEEchHHHHHHHhc--------CccccCCCEEEEeCCccCCccHHHHHHHHHHHh-
Confidence 0 00 000 1234556677766544431 124889999999999998443233333333222
Q ss_pred cCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEEEec
Q 004428 511 RIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFN 590 (754)
Q Consensus 511 ~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~ 590 (754)
..+ .+|+|+||||+++.+..+... +.+ .+.+. ..++
T Consensus 121 ~~~----------------------~~~~l~~SAT~~~~~~~~~~~---~~~-i~~~~------------------~~~~ 156 (431)
T 2v6i_A 121 SMG----------------------DAGAIFMTATPPGTTEAFPPS---NSP-IIDEE------------------TRIP 156 (431)
T ss_dssp HTT----------------------SCEEEEEESSCTTCCCSSCCC---SSC-CEEEE------------------CCCC
T ss_pred hCC----------------------CCcEEEEeCCCCcchhhhcCC---CCc-eeecc------------------ccCC
Confidence 111 389999999999854322110 110 01110 0111
Q ss_pred cCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCcc
Q 004428 591 ADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRK 670 (754)
Q Consensus 591 ~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ 670 (754)
.... . .++..+.. ..+++|||||+..+...+...|++.++.+..+|+. +|.+++..|++|+.+
T Consensus 157 ~~~~--------~----~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~ 219 (431)
T 2v6i_A 157 DKAW--------N----SGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD 219 (431)
T ss_dssp SSCC--------S----SCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS
T ss_pred HHHH--------H----HHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe
Confidence 1110 0 12222322 35789999999999999999999999999999985 577899999999999
Q ss_pred EEEEcccccccCccccCCCCe-----------------EEEccCCCCCCchhhhccccCCCC-CceEEEEec
Q 004428 671 MILYTERSHFYHRYKIRGIQN-----------------LIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFS 724 (754)
Q Consensus 671 ILL~TErahffRr~dIkgV~~-----------------VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~s 724 (754)
|||+|+++. +|+||+ +.+ ||+|+.|.++..|.||+||+||.+ .+.|..+|.
T Consensus 220 vLVaT~v~e--~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 220 FVITTDISE--MGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEECGGGG--TSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEEECchHH--cCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999 999998 877 578899999999999999999987 333444443
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=257.15 Aligned_cols=288 Identities=13% Similarity=0.060 Sum_probs=196.2
Q ss_pred HHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccccc
Q 004428 260 SKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLD 339 (754)
Q Consensus 260 piQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RD 339 (754)
|.|..-....++++||+++++|| +|||. ++|.++.+.
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTG---------SGKT~----~al~~l~~~------------------------------ 179 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTN---------SGKTY----HAIQKYFSA------------------------------ 179 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTT---------SSHHH----HHHHHHHHS------------------------------
T ss_pred hhhhCHHHHhcCCCEEEEEcCCC---------CCHHH----HHHHHHHhc------------------------------
Confidence 33433334457899999999998 89997 666666532
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCC
Q 004428 340 RGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSD 419 (754)
Q Consensus 340 QGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D 419 (754)
+++||++|||+||.|+.+.+.++... + ....|
T Consensus 180 -----~~gl~l~PtR~LA~Qi~~~l~~~g~~-----v------~lltG-------------------------------- 211 (677)
T 3rc3_A 180 -----KSGVYCGPLKLLAHEIFEKSNAAGVP-----C------DLVTG-------------------------------- 211 (677)
T ss_dssp -----SSEEEEESSHHHHHHHHHHHHHTTCC-----E------EEECS--------------------------------
T ss_pred -----CCeEEEeCHHHHHHHHHHHHHhcCCc-----E------EEEEC--------------------------------
Confidence 23599999999999999998876211 1 01111
Q ss_pred ceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc
Q 004428 420 YQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW 499 (754)
Q Consensus 420 ~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw 499 (754)
+.+++|+||||+.+++-.+- ...+.+..+.++||||||.|+...|
T Consensus 212 -------------------------------~~~~iv~TpGr~~~il~~T~----e~~~l~~~v~lvVIDEaH~l~d~~~ 256 (677)
T 3rc3_A 212 -------------------------------EERVTVQPNGKQASHVSCTV----EMCSVTTPYEVAVIDEIQMIRDPAR 256 (677)
T ss_dssp -------------------------------SCEECCSTTCCCCSEEEEEG----GGCCSSSCEEEEEECSGGGGGCTTT
T ss_pred -------------------------------CeeEEecCCCcccceeEecH----hHhhhcccCCEEEEecceecCCccc
Confidence 12234455555444442110 1133578899999999999984434
Q ss_pred h-HHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCccccc
Q 004428 500 S-WLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKV 578 (754)
Q Consensus 500 ~-hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v 578 (754)
. .+..++..+ |. ..+|++++|||. +.+..++.... ..+.+.....
T Consensus 257 g~~~~~~l~~l---~~--------------------~~i~il~~SAT~-~~i~~l~~~~~----~~~~v~~~~r------ 302 (677)
T 3rc3_A 257 GWAWTRALLGL---CA--------------------EEVHLCGEPAAI-DLVMELMYTTG----EEVEVRDYKR------ 302 (677)
T ss_dssp HHHHHHHHHHC---CE--------------------EEEEEEECGGGH-HHHHHHHHHHT----CCEEEEECCC------
T ss_pred hHHHHHHHHcc---Cc--------------------cceEEEeccchH-HHHHHHHHhcC----CceEEEEeee------
Confidence 3 445555443 31 138999999994 55666654431 1233321100
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
...+. +... .+..+. ....+.+|||+|..+..++...|.+.++.++.+|+.+++.+|.
T Consensus 303 ~~~l~-----~~~~----------------~l~~l~-~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~ 360 (677)
T 3rc3_A 303 LTPIS-----VLDH----------------ALESLD-NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKL 360 (677)
T ss_dssp SSCEE-----ECSS----------------CCCSGG-GCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred cchHH-----HHHH----------------HHHHHH-hcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHH
Confidence 00010 0000 000111 1246779999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCccEEEEcccccccCccccCCCCeEEEccC--------------CCCCCchhhhccccCCCCC----ce
Q 004428 659 RARVWFFE--GKRKMILYTERSHFYHRYKIRGIQNLIIYSL--------------PERKEFYPEIVNMLEGSHN----MT 718 (754)
Q Consensus 659 rar~~F~~--G~~~ILL~TErahffRr~dIkgV~~VIfY~l--------------P~~pefY~erigrt~ra~~----g~ 718 (754)
+....|++ |+++|||||+.+. +|+|| +|++||+|++ |.++..|.||+||+||.+. |.
T Consensus 361 ~~~~~F~~~~g~~~VLVATdi~e--~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~ 437 (677)
T 3rc3_A 361 AQAKKFNDPNDPCKILVATDAIG--MGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 437 (677)
T ss_dssp HHHHHHHCTTSSCCEEEECGGGG--SSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEE
T ss_pred HHHHHHHccCCCeEEEEeCcHHH--CCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEE
Confidence 99999999 9999999999999 99999 9999999999 7788999999999999872 55
Q ss_pred EEEEechhcHHHHHH
Q 004428 719 CTVLFSRFDMLRLER 733 (754)
Q Consensus 719 ~~~L~sk~D~~~LEr 733 (754)
|+.+ +..|...+.+
T Consensus 438 v~~l-~~~d~~~~~~ 451 (677)
T 3rc3_A 438 VTTM-NHEDLSLLKE 451 (677)
T ss_dssp EEES-STTHHHHHHH
T ss_pred EEEE-ecchHHHHHH
Confidence 5544 4445444443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=211.92 Aligned_cols=201 Identities=17% Similarity=0.227 Sum_probs=152.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
..+|++++|++.|++++.+. |+.. |+|+|+++++.+++++|++.+++|| +|||.+|++++++++.+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~----g~~~-~~~~Q~~~i~~~~~~~~~li~~~TG---------sGKT~~~~~~~~~~~~~ 78 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC----GFEH-PSEVQHECIPQAILGMDVLCQAKSG---------MGKTAVFVLATLQQLEP 78 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT----TCCC-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHCCC
T ss_pred CCCHhhcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHhCCCCEEEECCCC---------CchhhhhhHHHHHhhhc
Confidence 46799999999999999874 7765 8999999999999999999999998 89999999999998742
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
. ...+++|||+|||+||.|+.+.+.++...... .+....+|+
T Consensus 79 ~--------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~------~~v~~~~g~ 120 (220)
T 1t6n_A 79 V--------------------------------TGQVSVLVMCHTRELAFQISKEYERFSKYMPN------VKVAVFFGG 120 (220)
T ss_dssp C--------------------------------TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT------CCEEEESCC
T ss_pred c--------------------------------CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC------ceEEEEeCC
Confidence 1 12478999999999999999999988643210 111112222
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
. ......-.+.. ..++|||+||++|..++..
T Consensus 121 ~-----------------------------------------------~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~ 151 (220)
T 1t6n_A 121 L-----------------------------------------------SIKKDEEVLKK--NCPHIVVGTPGRILALARN 151 (220)
T ss_dssp S-----------------------------------------------CHHHHHHHHHH--SCCSEEEECHHHHHHHHHT
T ss_pred C-----------------------------------------------ChHHHHHHHhc--CCCCEEEeCHHHHHHHHHh
Confidence 1 11111111211 3579999999999998862
Q ss_pred hhcccccCcccCCceeEEEEecchhhhh--cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILM--QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLm--QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
....++.+.++||||||.|+. ++|..+..++. .+|.. +|+|+||||+
T Consensus 152 -------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~---~~~~~---------------------~~~i~~SAT~ 200 (220)
T 1t6n_A 152 -------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR---MTPHE---------------------KQVMMFSATL 200 (220)
T ss_dssp -------TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHH---TSCSS---------------------SEEEEEESCC
T ss_pred -------CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHH---hCCCc---------------------CeEEEEEeec
Confidence 334589999999999999984 33444444443 34432 8999999999
Q ss_pred CHHHHHHHHHhhcCC
Q 004428 547 NPEINAFFNHHCANY 561 (754)
Q Consensus 547 ~peinsL~~~~~~N~ 561 (754)
++++..+++.++.|+
T Consensus 201 ~~~~~~~~~~~~~~p 215 (220)
T 1t6n_A 201 SKEIRPVCRKFMQDP 215 (220)
T ss_dssp CTTTHHHHHTTCSSC
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999999885
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=240.64 Aligned_cols=321 Identities=11% Similarity=0.052 Sum_probs=208.9
Q ss_pred CCCHHHHHHhhhhhC--------------CccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhh
Q 004428 257 FHSSKQRSFFSLCNS--------------YRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAK 322 (754)
Q Consensus 257 ~pTpiQ~~~ip~i~~--------------y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~ 322 (754)
.|+|.|..+++.++. +++.++.+.|| +|||.++ ++++ +++..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TG---------SGKT~t~-~~l~-~ll~~------------- 326 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTG---------SGKTLTS-FKAA-RLATE------------- 326 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTT---------SSHHHHH-HHHH-HHHTT-------------
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCC---------CCHHHHH-HHHH-HHHHh-------------
Confidence 389999999999875 37899999998 8999996 7777 44321
Q ss_pred hccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhh
Q 004428 323 NKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQ 402 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~ 402 (754)
.+ ..++||||||+|+|+.|+.+.+.++++.. + .|+..
T Consensus 327 -----------------~~-~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~----v---------~~~~s------------ 363 (1038)
T 2w00_A 327 -----------------LD-FIDKVFFVVDRKDLDYQTMKEYQRFSPDS----V---------NGSEN------------ 363 (1038)
T ss_dssp -----------------CT-TCCEEEEEECGGGCCHHHHHHHHTTSTTC----S---------SSSCC------------
T ss_pred -----------------cC-CCceEEEEeCcHHHHHHHHHHHHHhcccc----c---------ccccC------------
Confidence 00 12589999999999999999998876421 1 11110
Q ss_pred cccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCc
Q 004428 403 NIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSS 482 (754)
Q Consensus 403 ~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSS 482 (754)
..-.++.++ . .+++||||||.+|..++... .....++.
T Consensus 364 ---------------------------------~~~l~~~L~--~--~~~~IiVtTiqkl~~~l~~~-----~~~~~~~~ 401 (1038)
T 2w00_A 364 ---------------------------------TAGLKRNLD--K--DDNKIIVTTIQKLNNLMKAE-----SDLPVYNQ 401 (1038)
T ss_dssp ---------------------------------CHHHHHHHH--C--SSCCEEEEEHHHHHHHHHHC-----CCCGGGGS
T ss_pred ---------------------------------HHHHHHHhc--C--CCCCEEEEEHHHHHHHHhcc-----cchhcccc
Confidence 001122222 1 36899999999999988621 11223667
Q ss_pred eeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH--------HHHHH
Q 004428 483 IEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE--------INAFF 554 (754)
Q Consensus 483 IEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe--------insL~ 554 (754)
..++|+||||++..+. ....|++.+ |. +|.|.||||.... ...+|
T Consensus 402 ~~lvIiDEAHrs~~~~--~~~~I~~~~---p~----------------------a~~lgfTATP~~~~~~~~~~~t~~~F 454 (1038)
T 2w00_A 402 QVVFIFDECHRSQFGE--AQKNLKKKF---KR----------------------YYQFGFTGTPIFPENALGSETTASVF 454 (1038)
T ss_dssp CEEEEEESCCTTHHHH--HHHHHHHHC---SS----------------------EEEEEEESSCCCSTTCTTSCCHHHHH
T ss_pred ccEEEEEccchhcchH--HHHHHHHhC---Cc----------------------ccEEEEeCCccccccchhhhHHHHHh
Confidence 8999999999987422 233444443 42 7999999999753 33344
Q ss_pred HHhhcCCCceEEEee-cccCcccccccceeEEEEEecc---------C----------cccchhHHHHHHHHHHHhHHhh
Q 004428 555 NHHCANYQGKVKLAC-EYKGVLPKVLLNVRQIYERFNA---------D----------SIAKADDARLEYFTKKVFPKIK 614 (754)
Q Consensus 555 ~~~~~N~~G~Vkv~~-~~~g~i~~v~~~I~Q~f~r~~~---------~----------s~~~~~d~Rf~yF~~~iLp~l~ 614 (754)
...+..|. +.. ...|.+ .++...|..+.. . ... ..+.|....+..|+..+.
T Consensus 455 G~~i~~Y~----l~~AI~dg~l----~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l-~~~~ri~~I~~~Il~~~~ 525 (1038)
T 2w00_A 455 GRELHSYV----ITDAIRDEKV----LKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAF-LHPMRIQEITQYILNNFR 525 (1038)
T ss_dssp CSEEEEEC----HHHHHHHTSS----CCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTT-TCHHHHHHHHHHHHHHHH
T ss_pred CCeeEeec----HHHHHhCCCc----CCeEEEEEeccchhhhccccccHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 22111110 000 001211 112211111100 0 000 123344433444444432
Q ss_pred hc--------CCCcEEEEecchhcHHHHHHHHHhCC------------Cce-EeecCC----------C----------C
Q 004428 615 DS--------IQGGIMLFLSSYFEFVRLRNFLKSQN------------ASF-CLLGDY----------T----------E 653 (754)
Q Consensus 615 ~~--------~~~~tLIFv~Sy~d~vrlrn~Lk~~~------------~~f-~~Ihey----------~----------s 653 (754)
.. ...++||||+|...+.++...|++.+ +.+ +.+|+. + +
T Consensus 526 ~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~ 605 (1038)
T 2w00_A 526 QKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMD 605 (1038)
T ss_dssp HHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSC
T ss_pred HhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccc
Confidence 21 23579999999999999999998654 555 455542 1 2
Q ss_pred H-----------------------------HHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCch
Q 004428 654 P-----------------------------SDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFY 704 (754)
Q Consensus 654 q-----------------------------~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY 704 (754)
+ ..|..+...|++|+++|||+||++. +|+|++.+ +|++++.|...+.|
T Consensus 606 ~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ll--tGfDiP~l-~tlylDkpl~~~~l 682 (1038)
T 2w00_A 606 SSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFL--TGFDAPTL-NTLFVDKNLRYHGL 682 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTS--SSCCCTTE-EEEEEESCCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHH--hCcCcccc-cEEEEccCCCccce
Confidence 2 2477888999999999999999999 99999999 89999999999999
Q ss_pred hhhccccCCCCC-----ceEEEEech
Q 004428 705 PEIVNMLEGSHN-----MTCTVLFSR 725 (754)
Q Consensus 705 ~erigrt~ra~~-----g~~~~L~sk 725 (754)
+|++||++|... |.++.++..
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred eehhhccCcCCCCCCCcEEEEEcccc
Confidence 999999999752 566666553
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=215.25 Aligned_cols=123 Identities=16% Similarity=0.056 Sum_probs=107.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC--------C
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR--------G 688 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk--------g 688 (754)
...++||||+|......|.+.|++.|++...||+. |.+|.+++-.+.-+...|||||++|+ ||+||+ |
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgk--q~~rE~~ii~~ag~~g~VtVATdmAg--RGtDI~lg~~V~~~G 548 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAK--YHEKEAEIVAKAGQKGMVTIATNMAG--RGTDIKLGPGVAELG 548 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSC--HHHHHHHHHHHHHSTTCEEEEETTTT--TTCCCCCCTTTTTTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC--chHHHHHHHHhCCCCCeEEEEcchhh--CCcCccCCcchhhcC
Confidence 35689999999999999999999999999999997 66666655444433447999999999 999999 8
Q ss_pred CCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 689 IQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 689 V~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
+.|||||++|.++..|.||+|||||+| .|++++++|..|. |-|+.|.++...|+.
T Consensus 549 glhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~--l~r~fg~~~~~~~m~ 604 (822)
T 3jux_A 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD--LLRIFGSEQIGKVMN 604 (822)
T ss_dssp SCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH--HHHHTTHHHHHHHHH
T ss_pred CCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH--HHHhhhHHHHHHHHH
Confidence 889999999999999999999999998 6999999999883 346789999888886
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=235.77 Aligned_cols=110 Identities=12% Similarity=0.223 Sum_probs=99.7
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCccccCCCCeE
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKS-QNASFCLLGDYTEPSDISRARVWFFEGK--RKMILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~-~~~~f~~Ihey~sq~~r~rar~~F~~G~--~~ILL~TErahffRr~dIkgV~~V 692 (754)
....++||||++...+..|..+|+. .|+++..+||.+++.+|.+++..|++|+ ++|||+|+++. +|+||+++++|
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~--~GlDl~~~~~V 578 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS--EGRNFQFASHM 578 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT--CSSCCTTCCEE
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh--cCCCcccCcEE
Confidence 4578999999999999999999995 6999999999999999999999999998 99999999999 99999999999
Q ss_pred EEccCCCCCCchhhhccccCCCC-Cce--EEEEechhc
Q 004428 693 IIYSLPERKEFYPEIVNMLEGSH-NMT--CTVLFSRFD 727 (754)
Q Consensus 693 IfY~lP~~pefY~erigrt~ra~-~g~--~~~L~sk~D 727 (754)
|+|++|.+|..|.|++||++|.| .+. ++.+++...
T Consensus 579 I~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 579 VMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp ECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred EEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 99999999999999999999987 343 444455443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-20 Score=203.48 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=93.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcC-Ccc-EEEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFFEG-KRK-MILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~~G-~~~-ILL~TErahffRr~dIkgV~~VI 693 (754)
...++|||+++......|..+|++. ++.+..+||.+++.+|.+++..|++| .++ ||++|+.+. +|+++.++++||
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~--~Glnl~~~~~vi 417 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG--FGINLTSANRVI 417 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC---CCCCCTTCSEEE
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc--CCCchhhCCEEE
Confidence 4579999999999999999999986 99999999999999999999999999 565 899999999 999999999999
Q ss_pred EccCCCCCCchhhhccccCCCCC---ceEEEEechh
Q 004428 694 IYSLPERKEFYPEIVNMLEGSHN---MTCTVLFSRF 726 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~~---g~~~~L~sk~ 726 (754)
+|++|-+|..|.+++||++|.|. ..+.-|+++.
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999872 3445566654
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=179.49 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=124.8
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
...+|+|.|..++. +.|+..+.. + +.....+++||||++...+..|...|+..++.+..+|+.+++.+|
T Consensus 6 ~~~~i~~~~~~~~~-------~~K~~~L~~-l---l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 6 TTRNIEHAVIQVRE-------ENKFSLLKD-V---LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDR 74 (163)
T ss_dssp CCCCEEEEEEECCG-------GGHHHHHHH-H---HHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CcccceEEEEECCh-------HHHHHHHHH-H---HHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 35579999998763 235543222 2 233456799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
.+++..|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||+||++|.+ .|.|++|++..|...+.+|
T Consensus 75 ~~~~~~f~~g~~~vlv~T~~~~--~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 75 FDVMNEFKRGEYRYLVATDVAA--RGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp HHHHHHHHTTSCSEEEECGGGT--TTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEECChhh--cCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999987 7999999999887555433
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=179.97 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=120.3
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
..+|+|.|..++. .+.|+..+. ..+.....+++||||++...+..|..+|...++.+..+|+.+++.+|.
T Consensus 5 ~~~i~q~~~~~~~------~~~K~~~L~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 5 LNNIRQYYVLCEH------RKDKYQALC----NIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRA 74 (175)
T ss_dssp BCCEEEEEEECSS------HHHHHHHHH----HHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHH
T ss_pred cCCceEEEEEcCC------hHhHHHHHH----HHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Confidence 4579999998763 234655322 222333567999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCC------CCCCchhhhccccCCCC-CceEEEEechhcHHHH
Q 004428 659 RARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLP------ERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL 731 (754)
Q Consensus 659 rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP------~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L 731 (754)
+++..|++|+++|||+|+.+. ||+||+++++||+|++| .++..|.||+||+||.+ .|.|++|++..|...+
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~--~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~ 152 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCA--RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSL 152 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCC--TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHH
T ss_pred HHHHHHHcCCCeEEEEecchh--cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHH
Confidence 999999999999999999999 99999999999999999 88999999999999987 6899999998886554
Q ss_pred HH
Q 004428 732 ER 733 (754)
Q Consensus 732 Er 733 (754)
.+
T Consensus 153 ~~ 154 (175)
T 2rb4_A 153 MK 154 (175)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=186.16 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=119.0
Q ss_pred HhhcCCCceEEEeecccCcccccccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHH
Q 004428 556 HHCANYQGKVKLACEYKGVLPKVLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLR 635 (754)
Q Consensus 556 ~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlr 635 (754)
.++.|+ ..|.+... ......|.|.|..++. ..|+.++. .+.....+++||||++...+..|.
T Consensus 10 ~~~~~p-~~i~v~~~-----~~~~~~i~q~~~~~~~-------~~K~~~L~-----~~l~~~~~~~lVF~~~~~~~~~l~ 71 (191)
T 2p6n_A 10 GVDLGT-ENLYFQSM-----GAASLDVIQEVEYVKE-------EAKMVYLL-----ECLQKTPPPVLIFAEKKADVDAIH 71 (191)
T ss_dssp ------------------------CCSEEEEEECCG-------GGHHHHHH-----HHHTTSCSCEEEECSCHHHHHHHH
T ss_pred cccCCC-EEEEECCC-----CCCCcCceEEEEEcCh-------HHHHHHHH-----HHHHhCCCCEEEEECCHHHHHHHH
Confidence 355554 34544322 2346789999998763 23554322 233334568999999999999999
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC
Q 004428 636 NFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH 715 (754)
Q Consensus 636 n~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~ 715 (754)
.+|+..++.+..+|+.+++.+|.+++..|++|+.+|||+|+++. ||+||++|++||+|++|.++..|.||+||+||.+
T Consensus 72 ~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~--~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g 149 (191)
T 2p6n_A 72 EYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS--KGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG 149 (191)
T ss_dssp HHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH--TTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC--
T ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh--cCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999997
Q ss_pred -CceEEEEechh-cHHHH
Q 004428 716 -NMTCTVLFSRF-DMLRL 731 (754)
Q Consensus 716 -~g~~~~L~sk~-D~~~L 731 (754)
.|.|++|++.. |...+
T Consensus 150 ~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 150 NTGIATTFINKACDESVL 167 (191)
T ss_dssp -CCEEEEEECTTSCHHHH
T ss_pred CCcEEEEEEcCchhHHHH
Confidence 79999999976 54433
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=175.85 Aligned_cols=142 Identities=12% Similarity=0.141 Sum_probs=118.6
Q ss_pred cceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHH
Q 004428 580 LNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISR 659 (754)
Q Consensus 580 ~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~r 659 (754)
.+|+|.|..++.. +.|+..+ ...+.....+++||||++...+..|...|+..++.+..+|+.+++.+|.+
T Consensus 2 ~~i~~~~~~~~~~------~~K~~~l----~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 2 EGIKQFYVNVEEE------EYKYECL----TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp --CEEEEEEEESG------GGHHHHH----HHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CCcEEEEEECCcc------hhHHHHH----HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 3588999987642 2244422 22223335689999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHH
Q 004428 660 ARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLER 733 (754)
Q Consensus 660 ar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LEr 733 (754)
++..|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||+||+||.+ .|.|++|++..|...+.+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~--~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 144 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLA--RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE 144 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGT--TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHH
T ss_pred HHHHHHcCCCEEEEEcChhh--cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999987 699999999888655533
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=179.00 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=122.9
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
...|+|.|..++. +.|+..+ +..+......++||||++...+..|...|...++.+..+|+.+++.+|.
T Consensus 3 ~~~i~q~~~~~~~-------~~K~~~L----~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-------NEKNRKL----FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 71 (172)
T ss_dssp --CCEEEEEECCG-------GGHHHHH----HHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred cCCeEEEEEECCh-------HHHHHHH----HHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHH
Confidence 3568999998764 2355422 2223334567999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechh-cH---HHHHH
Q 004428 659 RARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRF-DM---LRLER 733 (754)
Q Consensus 659 rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~-D~---~~LEr 733 (754)
+++..|++|+.+|||+|+.+. ||+||+++++||+|++|.++..|.||+||++|.+ .|.|++|++.. |. ..|++
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~--~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~ 149 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFG--RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 149 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCS--TTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEECCchh--cCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999987 68999999865 33 34455
Q ss_pred HhCc
Q 004428 734 IVGS 737 (754)
Q Consensus 734 IVGt 737 (754)
.++.
T Consensus 150 ~~~~ 153 (172)
T 1t5i_A 150 RFEV 153 (172)
T ss_dssp HHCC
T ss_pred HHhc
Confidence 5444
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=214.59 Aligned_cols=117 Identities=8% Similarity=-0.039 Sum_probs=108.6
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||+|...+.+|..+|+..++++..+|+.+++.+|.+++..|+.|+++|||+|++++ ||+||++|++||+|+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~--~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR--EGLDIPEVSLVAILD 521 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS--TTCCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhh--CCcccCCCCEEEEeC
Confidence 346999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred C-----CCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHh
Q 004428 697 L-----PERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 697 l-----P~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIV 735 (754)
+ |.++..|.||+||+||+..|.|++|+++.+...+..|-
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHHHHH
T ss_pred cccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHHHHH
Confidence 8 99999999999999999889999999987764444433
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=180.56 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=110.6
Q ss_pred hcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE
Q 004428 615 DSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII 694 (754)
Q Consensus 615 ~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf 694 (754)
....+++||||++......|...|.+.++.+..+|+.+++.+|.+++..|++|+++|||+|+++. ||+||++|++||+
T Consensus 28 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA--RGLDIPQVDLVVH 105 (212)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT--CSSSCCCBSEEEE
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh--cCCCCccCcEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHH---HHHhC
Q 004428 695 YSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL---ERIVG 736 (754)
Q Consensus 695 Y~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L---ErIVG 736 (754)
|++|.++..|.||+||+||.+ .|.|++||+..|...+ ++.++
T Consensus 106 ~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 106 YRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp SSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999997 7999999998885544 44444
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=178.05 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=109.4
Q ss_pred cccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH
Q 004428 578 VLLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI 657 (754)
Q Consensus 578 v~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r 657 (754)
...+|.|.|..++.. .|+..+.. +|... ....++||||++...+..|..+|+..++.+..+|+.+++.+|
T Consensus 16 ~~~~i~q~~~~v~~~-------~K~~~L~~-ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 16 TSENITQKVVWVEES-------DKRSFLLD-LLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp CCTTEEEEEEECCGG-------GHHHHHHH-HHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred CCCCceEEEEEeCcH-------HHHHHHHH-HHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 456899999987632 34443322 32221 145789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHH
Q 004428 658 SRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLE 732 (754)
Q Consensus 658 ~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LE 732 (754)
.+++..|++|+++|||+|+.+. +|+||+++.+||+|++|.++..|.+|+||++|.+ .|.|++|++..|...+.
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~--~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 159 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAA--RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 159 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC--------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHH
T ss_pred HHHHHHHHcCCCeEEEEcChhh--cCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999987 79999999988854443
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-19 Score=187.63 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=119.8
Q ss_pred ceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHH
Q 004428 581 NVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 581 ~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ra 660 (754)
.++|.+..+... .|+..... + +.....+++||||++......|...|...++.+..+|+.+++.+|.++
T Consensus 2 ~v~~~~i~~~~~-------~K~~~L~~-l---l~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 2 TYEEEAVPAPVR-------GRLEVLSD-L---LYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp CSEEEEEECCSS-------SHHHHHHH-H---HHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHH
T ss_pred ceEEEEEECCHH-------HHHHHHHH-H---HHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 467888876643 24442221 2 223347899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHH---HHHHhC
Q 004428 661 RVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLR---LERIVG 736 (754)
Q Consensus 661 r~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~---LErIVG 736 (754)
+..|++|+++|||+|+++. ||+||++|++||||++|.++..|.||+||+||.+ .|.|+.||+..|... |++.++
T Consensus 71 ~~~f~~g~~~vLVaT~va~--~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAA--RGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp HHHHHHTSCCEEEECSTTT--CSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred HHHhhcCCceEEEEechhh--cCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999 9999999999999999999999999999999997 799999999888544 455554
Q ss_pred c
Q 004428 737 S 737 (754)
Q Consensus 737 t 737 (754)
.
T Consensus 149 ~ 149 (300)
T 3i32_A 149 R 149 (300)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=204.88 Aligned_cols=120 Identities=8% Similarity=-0.058 Sum_probs=110.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||+|...+.+|..+|.+.++.+..+|+.+++.+|.+++..|+.|+++|||+|+.++ +|+||++|++||+|+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~--~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR--EGLDIPEVSLVAILD 515 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCC--TTCCCTTEEEEEETT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhh--cCccCCCCCEEEEeC
Confidence 357999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred C-----CCCCCchhhhccccCCCCCceEEEEechhcHHHHHHHhCch
Q 004428 697 L-----PERKEFYPEIVNMLEGSHNMTCTVLFSRFDMLRLERIVGSA 738 (754)
Q Consensus 697 l-----P~~pefY~erigrt~ra~~g~~~~L~sk~D~~~LErIVGt~ 738 (754)
+ |.++..|.||+||+||.+.|.|+++++..+...+..|-.+.
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHHHHHHHHH
Confidence 8 99999999999999999999999999887765554444433
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=182.66 Aligned_cols=116 Identities=7% Similarity=0.047 Sum_probs=102.0
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCccc
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRK---MILYTERSHFYHRYK 685 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~---ILL~TErahffRr~d 685 (754)
+|..+......++|||+........|..+|...++.++.|||.+++.+|.+++..|.+|... |||+|+.+. .|++
T Consensus 407 ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g--~Gln 484 (644)
T 1z3i_X 407 ILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGG--CGLN 484 (644)
T ss_dssp HHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSC--TTCC
T ss_pred HHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEeccccc--CCcc
Confidence 44444333567999999999999999999999999999999999999999999999999764 899999999 9999
Q ss_pred cCCCCeEEEccCCCCCCchhhhccccCCCCC---ceEEEEechh
Q 004428 686 IRGIQNLIIYSLPERKEFYPEIVNMLEGSHN---MTCTVLFSRF 726 (754)
Q Consensus 686 IkgV~~VIfY~lP~~pefY~erigrt~ra~~---g~~~~L~sk~ 726 (754)
+.++++||+|++|-+|..|.+++||+.|.|. ..+.-|+++.
T Consensus 485 l~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 485 LIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999999999999999873 3455566654
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-20 Score=176.44 Aligned_cols=147 Identities=15% Similarity=0.236 Sum_probs=122.6
Q ss_pred ceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHH
Q 004428 581 NVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRA 660 (754)
Q Consensus 581 ~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ra 660 (754)
+|.|.|..++.. +.|+..+. .+ +.....+++||||++...+..|..+|+..++.+..+|+.+++.+|.++
T Consensus 3 ~i~~~~~~~~~~------~~k~~~l~-~l---l~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 3 KIHQWYYRADDL------EHKTALLV-HL---LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 72 (170)
Confidence 477888776531 23443221 12 222345789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHH---HHHHhC
Q 004428 661 RVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLR---LERIVG 736 (754)
Q Consensus 661 r~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~---LErIVG 736 (754)
+..|++|+.+|||+|+.+. +|+||+++++||+|++|.++..|.||+||+||.+ .|.|++|++..|... +++..+
T Consensus 73 ~~~f~~g~~~vLvaT~~~~--~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 73 IKRLTEGRVNVLVATDVAA--RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 9999999999999999999 9999999999999999999999999999999987 789999998887544 455555
Q ss_pred chH
Q 004428 737 SAH 739 (754)
Q Consensus 737 t~r 739 (754)
.+.
T Consensus 151 ~~~ 153 (170)
T 2yjt_D 151 EPI 153 (170)
Confidence 443
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=178.94 Aligned_cols=108 Identities=10% Similarity=0.051 Sum_probs=98.6
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCccccCCCCeEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRK---MILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~---ILL~TErahffRr~dIkgV~~VI 693 (754)
...++|||+........|..+|...++.++.|||.+++.+|.+++..|.+|... |||+|..+. .|+++..+.+||
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg--~GlNL~~a~~VI 648 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG--LGINLMTADTVV 648 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT--TTCCCTTCCEEE
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc--CCCCccccceEE
Confidence 346999999999999999999999999999999999999999999999997654 999999999 999999999999
Q ss_pred EccCCCCCCchhhhccccCCCC---CceEEEEechh
Q 004428 694 IYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 694 fY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
+|++|-+|..+..++||+.|-| ...++-|+++.
T Consensus 649 ~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 649 IFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp ESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred EecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999999999999999999877 34566677755
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-17 Score=163.64 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=118.0
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+++|.++++.+.++++++.+++|| +|||.+|.+++++++.....
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TG---------sGKTt~~~~~~~~~~~~~~~-------------------------- 106 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATG---------CGKTTQVPQFILDDFIQNDR-------------------------- 106 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTT---------SSHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCC---------CCcHHhHHHHHhcchhhcCC--------------------------
Confidence 3789999999999999999999998 89999999999999875411
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
...+++|+++|||++|.|+.+.+.......- ....|.
T Consensus 107 ----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~----------~~~~g~----------------------------- 143 (235)
T 3llm_A 107 ----AAECNIVVTQPRRISAVSVAERVAFERGEEP----------GKSCGY----------------------------- 143 (235)
T ss_dssp ----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT----------TSSEEE-----------------------------
T ss_pred ----CCceEEEEeccchHHHHHHHHHHHHHhcccc----------CceEEE-----------------------------
Confidence 1257899999999999999988876543210 000000
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhh-h-
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADII-L- 495 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~m-L- 495 (754)
++.+.++.. -.+++|+||||++|.+++.. .|+.+.+|||||||.+ +
T Consensus 144 -----------------~~~~~~~~~-----~~~~~Ivv~Tpg~l~~~l~~----------~l~~~~~lVlDEah~~~~~ 191 (235)
T 3llm_A 144 -----------------SVRFESILP-----RPHASIMFCTVGVLLRKLEA----------GIRGISHVIVDEIHERDIN 191 (235)
T ss_dssp -----------------EETTEEECC-----CSSSEEEEEEHHHHHHHHHH----------CCTTCCEEEECCTTSCCHH
T ss_pred -----------------eechhhccC-----CCCCeEEEECHHHHHHHHHh----------hhcCCcEEEEECCccCCcc
Confidence 011111000 03589999999999999862 3899999999999996 5
Q ss_pred hcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCC
Q 004428 496 MQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 496 mQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~ 561 (754)
|.+. ..+..++. ..|. +|+|+||||++.+. +.+++.+.
T Consensus 192 ~~~~~~~l~~i~~---~~~~----------------------~~~il~SAT~~~~~---~~~~~~~~ 230 (235)
T 3llm_A 192 TDFLLVVLRDVVQ---AYPE----------------------VRIVLMSATIDTSM---FCEYFFNC 230 (235)
T ss_dssp HHHHHHHHHHHHH---HCTT----------------------SEEEEEECSSCCHH---HHHHTTSC
T ss_pred hHHHHHHHHHHHh---hCCC----------------------CeEEEEecCCCHHH---HHHHcCCC
Confidence 3322 12333332 2232 79999999999876 55666553
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=171.60 Aligned_cols=136 Identities=13% Similarity=0.026 Sum_probs=100.1
Q ss_pred CCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccc
Q 004428 252 SGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGI 331 (754)
Q Consensus 252 ~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~ 331 (754)
.|+ . |||+|..++|++++|+ ++.++|| +|||.+|+||++-+.+.
T Consensus 76 lG~-~-Pt~VQ~~~ip~LlqG~--IaeakTG---------eGKTLvf~Lp~~L~aL~----------------------- 119 (997)
T 2ipc_A 76 LGM-R-HFDVQLIGGAVLHEGK--IAEMKTG---------EGKTLVATLAVALNALT----------------------- 119 (997)
T ss_dssp TCC-C-CCHHHHHHHHHHHTTS--EEECCST---------HHHHHHHHHHHHHHHTT-----------------------
T ss_pred hCC-C-CcHHHHhhcccccCCc--eeeccCC---------CchHHHHHHHHHHHHHh-----------------------
Confidence 577 3 8999999999999998 8999998 99999999999755541
Q ss_pred ccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCC
Q 004428 332 LIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSN 411 (754)
Q Consensus 332 ~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~ 411 (754)
| .+|+||+|||+||.|+.+.+..|....+ + +....+|
T Consensus 120 ---------G---~qv~VvTPTreLA~Qdae~m~~l~~~lG-L------sv~~i~G------------------------ 156 (997)
T 2ipc_A 120 ---------G---KGVHVVTVNDYLARRDAEWMGPVYRGLG-L------SVGVIQH------------------------ 156 (997)
T ss_dssp ---------C---SCCEEEESSHHHHHHHHHHHHHHHHTTT-C------CEEECCT------------------------
T ss_pred ---------C---CCEEEEeCCHHHHHHHHHHHHHHHHhcC-C------eEEEEeC------------------------
Confidence 1 2589999999999999999999864332 1 1112222
Q ss_pred CCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH-HHHHhhhhcccccCcccCC---ceeEEE
Q 004428 412 SQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL-HQKMTKAEENKEQDVDYLS---SIEVLI 487 (754)
Q Consensus 412 ~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL-r~lI~~~e~~k~rd~dfLS---SIEiLV 487 (754)
| +....+... |++||+||||++| .++|..... ...+...++ .+.++|
T Consensus 157 --------------g---------~~~~~r~~a-----y~~DIvyGTpgrlgfDyLrd~m~-~~~~~l~~r~d~~l~~lI 207 (997)
T 2ipc_A 157 --------------A---------STPAERRKA-----YLADVTYVTNSELGFDYLRDNMA-ISPDQLVLRHDHPLHYAI 207 (997)
T ss_dssp --------------T---------CCHHHHHHH-----HTSSEEEEEHHHHHHHHHHHTSC-SSTTTCCSCSSSSSCEEE
T ss_pred --------------C---------CCHHHHHHH-----cCCCEEEECchhhhhHHHHHhhh-cchhhcccccCCCcceEE
Confidence 2 222222332 5799999999999 888863110 001223477 899999
Q ss_pred Eecchhhh
Q 004428 488 IDHADIIL 495 (754)
Q Consensus 488 lDeAD~mL 495 (754)
|||||.||
T Consensus 208 IDEaDsmL 215 (997)
T 2ipc_A 208 IDEVDSIL 215 (997)
T ss_dssp ETTHHHHT
T ss_pred EechHHHH
Confidence 99999998
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=164.55 Aligned_cols=84 Identities=14% Similarity=0.273 Sum_probs=54.4
Q ss_pred HHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEE--EcccccccCccccCC
Q 004428 611 PKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMIL--YTERSHFYHRYKIRG 688 (754)
Q Consensus 611 p~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL--~TErahffRr~dIkg 688 (754)
..+.....+++|||+|||.....+...|+. +. +.+++.. .++.+.++.|+.|. .||+ +|+.+. +|+|++|
T Consensus 377 ~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~--EGiD~~~ 448 (540)
T 2vl7_A 377 KRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKES--EGVEFRE 448 (540)
T ss_dssp HHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------------
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCcee--cceecCC
Confidence 334445678999999999999999988865 22 3444443 56888999999875 7888 778755 9999999
Q ss_pred ----CCeEEEccCCCCCC
Q 004428 689 ----IQNLIIYSLPERKE 702 (754)
Q Consensus 689 ----V~~VIfY~lP~~pe 702 (754)
+++||+++||--+.
T Consensus 449 ~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 449 KENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---CEEEEEEESCCCCCT
T ss_pred CcccccEEEEECCCCCCC
Confidence 89999999994443
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=144.78 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=98.5
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|.++++.++++++++..++|| +|||.+|++++++++...+.
T Consensus 34 l~~~Q~~~i~~~~~~~~~li~~~tG---------sGKT~~~~~~~~~~~~~~~~-------------------------- 78 (216)
T 3b6e_A 34 LRPYQMEVAQPALEGKNIIICLPTG---------SGKTRVAVYIAKDHLDKKKK-------------------------- 78 (216)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECSCH---------HHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred chHHHHHHHHHHhcCCCEEEEcCCC---------CCHHHHHHHHHHHHHhhccc--------------------------
Confidence 7999999999999999999999998 99999999999998864310
Q ss_pred ccCCCCCceEEEEccchhHHHH-HHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALN-VVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSK 416 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~q-Iv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~K 416 (754)
....+++|||+|||+||.| +.+.+.++....- +....+|+...
T Consensus 79 ---~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~--------~v~~~~g~~~~------------------------- 122 (216)
T 3b6e_A 79 ---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWY--------RVIGLSGDTQL------------------------- 122 (216)
T ss_dssp ---TTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTS--------CEEECCC---C-------------------------
T ss_pred ---ccCCCcEEEEECHHHHHHHHHHHHHHHHhccCc--------eEEEEeCCccc-------------------------
Confidence 0124689999999999999 6677777754311 11122221100
Q ss_pred CCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhh-
Q 004428 417 PSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIIL- 495 (754)
Q Consensus 417 P~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mL- 495 (754)
......+ . .+++|+|+||..|...+..... ......++..+.++||||||.|+
T Consensus 123 --------------------~~~~~~~--~---~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 123 --------------------KISFPEV--V---KSCDIIISTAQILENSLLNLEN-GEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp --------------------CCCHHHH--H---HHCSEEEEEHHHHHHHHHC--------CCCGGGCSEEEETTC-----
T ss_pred --------------------chhHHhh--c---cCCCEEEECHHHHHHHHhccCc-ccccccchhcccEEEEECchhhcc
Confidence 0011111 1 2489999999999998863110 00112458899999999999998
Q ss_pred hcCchHHHH
Q 004428 496 MQNWSWLIE 504 (754)
Q Consensus 496 mQNw~hv~~ 504 (754)
.+.|..+..
T Consensus 177 ~~~~~~~~~ 185 (216)
T 3b6e_A 177 EAVYNNIMR 185 (216)
T ss_dssp --CHHHHHH
T ss_pred CCcHHHHHH
Confidence 446766543
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-12 Score=149.21 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=58.8
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccC---C-
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIR---G- 688 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIk---g- 688 (754)
+.....+++|||+|||..-..+... .+.....=...++ +...+..|+....-||++|=+..|+-|+|++ |
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 3345678999999999888777752 2333322222333 3456777754445899999877888999999 5
Q ss_pred -CCeEEEccCCCCC
Q 004428 689 -IQNLIIYSLPERK 701 (754)
Q Consensus 689 -V~~VIfY~lP~~p 701 (754)
.+.||..+||--+
T Consensus 462 ~l~~viI~~lPfp~ 475 (551)
T 3crv_A 462 LISDVVIVGIPYPP 475 (551)
T ss_dssp SEEEEEEESCCCCC
T ss_pred ceeEEEEEcCCCCC
Confidence 8999999999643
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=140.88 Aligned_cols=152 Identities=10% Similarity=0.050 Sum_probs=107.8
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|+|.|+++++.++.+.+.+.++.|| +|||.++++.++.++.+.
T Consensus 114 l~~~Q~~ai~~~l~~~~~ll~~~tG---------sGKT~~~~~~~~~~~~~~---------------------------- 156 (282)
T 1rif_A 114 PHWYQKDAVFEGLVNRRRILNLPTS---------AGRSLIQALLARYYLENY---------------------------- 156 (282)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCCTT---------SCHHHHHHHHHHHHHHHC----------------------------
T ss_pred ccHHHHHHHHHHHhcCCeEEEcCCC---------CCcHHHHHHHHHHHHHcC----------------------------
Confidence 7899999999988888888899998 899999999888776421
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..+||||+|||+||.|+.+.+.++..... .+....+|+.
T Consensus 157 ------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~-------~~~~~~~~~~---------------------------- 195 (282)
T 1rif_A 157 ------EGKILIIVPTTALTTQMADDFVDYRLFSH-------AMIKKIGGGA---------------------------- 195 (282)
T ss_dssp ------SSEEEEECSSHHHHHHHHHHHHHHTSCCG-------GGEEECSTTC----------------------------
T ss_pred ------CCeEEEEECCHHHHHHHHHHHHHhccccc-------ceEEEEeCCC----------------------------
Confidence 23799999999999999999998854221 1122222221
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
..+. . ...+++|+|+||..|... ...++..+.++||||||+|.-
T Consensus 196 ----------~~~~------------~---~~~~~~I~v~T~~~l~~~----------~~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 196 ----------SKDD------------K---YKNDAPVVVGTWQTVVKQ----------PKEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp ----------SSTT------------C---CCTTCSEEEECHHHHTTS----------CGGGGGGEEEEEEETGGGCCH-
T ss_pred ----------cchh------------h---hccCCcEEEEchHHHHhh----------HHHHHhhCCEEEEECCccCCc-
Confidence 1000 1 114689999999876432 123678999999999999983
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
..+..++ ..++. .+|+|+||||.+..
T Consensus 240 --~~~~~il---~~~~~---------------------~~~~l~lSATp~~~ 265 (282)
T 1rif_A 240 --KSISSII---SGLNN---------------------CMFKFGLSGSLRDG 265 (282)
T ss_dssp --HHHHHHT---TTCTT---------------------CCEEEEECSSCCTT
T ss_pred --ccHHHHH---HHhhc---------------------CCeEEEEeCCCCCc
Confidence 2333333 33322 38999999999754
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=136.67 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcC-Ccc-EEEEcc
Q 004428 600 ARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFFEG-KRK-MILYTE 676 (754)
Q Consensus 600 ~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~~G-~~~-ILL~TE 676 (754)
.|+..+. .+|..+.. ...++|||+.+......|..+|.+. ++.+..|||.+++.+|.+++..|++| .++ |||+|+
T Consensus 96 ~K~~~L~-~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 96 GKMIRTM-EIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp HHHHHHH-HHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHH-HHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 4565444 35555533 3579999999999999999999985 99999999999999999999999999 778 799999
Q ss_pred cccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEEEechh
Q 004428 677 RSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 677 rahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
.+. +|+++.++++||+||+|-+|..|.+++||++|.| ...++.|+++.
T Consensus 174 ~~g--~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGG--FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTC--CCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhc--CCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999 9999999999999999999999999999999987 24456677754
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.2e-10 Score=128.74 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=59.7
Q ss_pred hhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC--CC
Q 004428 613 IKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG--IQ 690 (754)
Q Consensus 613 l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg--V~ 690 (754)
+.....+++|||+|||.--..+...|+ .+..- ..-.++..++...+..|+ |+-.||++|-+..|.-|+|++| .+
T Consensus 443 l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~ 518 (620)
T 4a15_A 443 IILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELE 518 (620)
T ss_dssp HHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCC
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceE
Confidence 333457899999999999888888887 33332 333334568899999999 9999999999888999999998 78
Q ss_pred eEEEccCCCC
Q 004428 691 NLIIYSLPER 700 (754)
Q Consensus 691 ~VIfY~lP~~ 700 (754)
.||..+||--
T Consensus 519 ~viI~~lPfp 528 (620)
T 4a15_A 519 MIILAGLPFP 528 (620)
T ss_dssp EEEESSCCCC
T ss_pred EEEEEcCCCC
Confidence 9999999954
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=116.16 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=99.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
++|.|+++++.++...+++.++.|| +|||.++++.+...
T Consensus 94 l~~~Q~~ai~~~~~~~~~ll~~~tG---------~GKT~~a~~~~~~~-------------------------------- 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVDKRGCIVLPTG---------SGKTHVAMAAINEL-------------------------------- 132 (237)
T ss_dssp CCHHHHHHHHHHTTTSEEEEEESSS---------TTHHHHHHHHHHHS--------------------------------
T ss_pred cCHHHHHHHHHHHhCCCEEEEeCCC---------CCHHHHHHHHHHHc--------------------------------
Confidence 6899999999999999999999998 89999988876431
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..++||++||++|+.|+.+.+.++. .. +. ..+
T Consensus 133 ------~~~~liv~P~~~L~~q~~~~~~~~~-~~---------~v-~~~------------------------------- 164 (237)
T 2fz4_A 133 ------STPTLIVVPTLALAEQWKERLGIFG-EE---------YV-GEF------------------------------- 164 (237)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHHGGGC-GG---------GE-EEE-------------------------------
T ss_pred ------CCCEEEEeCCHHHHHHHHHHHHhCC-CC---------eE-EEE-------------------------------
Confidence 1358999999999999999988741 10 00 112
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
.|... ...+|+|+||..|...+.. +...+.+|||||||.+...
T Consensus 165 -------~g~~~--------------------~~~~i~v~T~~~l~~~~~~----------~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 165 -------SGRIK--------------------ELKPLTVSTYDSAYVNAEK----------LGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp -------SSSCB--------------------CCCSEEEEEHHHHHHTHHH----------HTTTCSEEEEECSSCCCTT
T ss_pred -------eCCCC--------------------CcCCEEEEeHHHHHhhHHH----------hcccCCEEEEECCccCCCh
Confidence 22110 1479999999998765541 2345899999999999754
Q ss_pred CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 498 NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 498 Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
.|. .+++.+ +. ++.|++|||...
T Consensus 208 ~~~---~i~~~~---~~----------------------~~~l~LSATp~r 230 (237)
T 2fz4_A 208 SYV---QIAQMS---IA----------------------PFRLGLTATFER 230 (237)
T ss_dssp THH---HHHHTC---CC----------------------SEEEEEEESCC-
T ss_pred HHH---HHHHhc---cC----------------------CEEEEEecCCCC
Confidence 443 333332 21 678999999874
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.79 E-value=5e-05 Score=87.61 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=56.0
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhH--HHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIM--ETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDA 336 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt--~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~ 336 (754)
++.|+.+++.++.+++++.++.+| |||| .++++++|.++...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pG---------TGKTt~l~~ll~~l~~~~~~--------------------------- 194 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPG---------TGKTTTVAKLLAALIQMADG--------------------------- 194 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTT---------STHHHHHHHHHHHHHHTCSS---------------------------
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCC---------CCHHHHHHHHHHHHHHhhhc---------------------------
Confidence 689999999999999999999887 8898 78888888765211
Q ss_pred cccCCCCCceEEEEccchhHHHHHHHHHHHh
Q 004428 337 FLDRGFTRPKVLILLPLKSIALNVVKRLIRL 367 (754)
Q Consensus 337 ~RDQGftRPkVLIL~PTRelA~qIv~~l~~L 367 (754)
..++||+++||+.+|.++.+.+..+
T Consensus 195 ------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 195 ------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp ------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred ------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 1368999999999999998877654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=82.47 E-value=2.5 Score=50.33 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=61.0
Q ss_pred CCcEEEEecchh----cHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSYF----EFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy~----d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++||.+|+.. -+.+++.++...+++++.+|+.++.+++.+.+..+.+|..+|+|+|- +.|.....+.++..||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~-~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH-ALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT-THHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH-HHHhhhhhccCCceEE
Confidence 468999999975 45555566656689999999999999999999999999999999995 3344556677777777
Q ss_pred E
Q 004428 694 I 694 (754)
Q Consensus 694 f 694 (754)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=80.43 E-value=3.4 Score=47.53 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=50.2
Q ss_pred CHHHHHHhhhhhCCccEEEe-cCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHS-NKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~-a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
.+-|++++-.+++.+|+... ++= +||||.. +++++.++++.
T Consensus 191 N~~Q~~AV~~al~~~~~~lI~GPP---------GTGKT~t-i~~~I~~l~~~---------------------------- 232 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKELAIIHGPP---------GTGKTTT-VVEIILQAVKQ---------------------------- 232 (646)
T ss_dssp CHHHHHHHHHHHHCSSEEEEECCT---------TSCHHHH-HHHHHHHHHHT----------------------------
T ss_pred CHHHHHHHHHHhcCCCceEEECCC---------CCCHHHH-HHHHHHHHHhC----------------------------
Confidence 57899999988888887553 332 3899975 56777777642
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
..+|||++||..+|-.|++.|....
T Consensus 233 ------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 233 ------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp ------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 2479999999999999999987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.97 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.97 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.92 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.91 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.9 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.88 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.88 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.88 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.86 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.84 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.81 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.79 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.78 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.73 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.67 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.67 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.65 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.54 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.4 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.35 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.35 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.27 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.25 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.78 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.75 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.75 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.75 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.71 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.47 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.35 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 98.25 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.72 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.69 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 97.67 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 95.25 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 93.47 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.26 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.11 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 91.83 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 88.35 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-35 Score=297.58 Aligned_cols=200 Identities=18% Similarity=0.262 Sum_probs=161.5
Q ss_pred CCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 228 DDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 228 ~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
...+|+++||++.|++++.++ ||.. |||||+++||.+++|+||++.|+|| +|||.||+||+|+|+.
T Consensus 15 ~~~sF~~l~L~~~l~~~L~~~----g~~~-pt~IQ~~aIp~il~g~dvi~~a~TG---------SGKTlayllPil~~l~ 80 (222)
T d2j0sa1 15 VTPTFDTMGLREDLLRGIYAY----GFEK-PSAIQQRAIKQIIKGRDVIAQSQSG---------TGKTATFSISVLQCLD 80 (222)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHHHHTCC
T ss_pred CCCCHHHCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHCCCCeEEEcCcc---------hhhhhhhccccccccc
Confidence 356899999999999999986 8876 9999999999999999999999998 9999999999999985
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
.. ...|++|||+||||||.|+.+.+.+++.... .|....+|
T Consensus 81 ~~--------------------------------~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~-------i~~~~~~g 121 (222)
T d2j0sa1 81 IQ--------------------------------VRETQALILAPTRELAVQIQKGLLALGDYMN-------VQCHACIG 121 (222)
T ss_dssp TT--------------------------------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCEEEECT
T ss_pred cc--------------------------------ccCceeEEecchHHHHHHHHHHHHHHhCccc-------eeEEEEee
Confidence 32 1358999999999999999999999976432 13333344
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+.. ..-....++ .++||||||||||.+++.
T Consensus 122 ~~~---------------------------------------------~~~~~~~l~-----~~~~Ilv~TPgrl~~~~~ 151 (222)
T d2j0sa1 122 GTN---------------------------------------------VGEDIRKLD-----YGQHVVAGTPGRVFDMIR 151 (222)
T ss_dssp TSC---------------------------------------------HHHHHHHHH-----HCCSEEEECHHHHHHHHH
T ss_pred ccc---------------------------------------------chhhHHHhc-----cCCeEEeCCCCcHHhccc
Confidence 331 111222232 468999999999999987
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. ....++.|++|||||||+|+.+++ +++..|+ +.+|+. |||++||||+
T Consensus 152 ~-------~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~---~~l~~~---------------------~Q~ilfSAT~ 200 (222)
T d2j0sa1 152 R-------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY---RYLPPA---------------------TQVVLISATL 200 (222)
T ss_dssp T-------TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHH---TTSCTT---------------------CEEEEEESCC
T ss_pred c-------cccccccceeeeecchhHhhhcCcHHHHHHHH---HhCCCC---------------------CEEEEEEEeC
Confidence 2 345799999999999999995544 4555554 556764 8999999999
Q ss_pred CHHHHHHHHHhhcCC
Q 004428 547 NPEINAFFNHHCANY 561 (754)
Q Consensus 547 ~peinsL~~~~~~N~ 561 (754)
++++..+++++++||
T Consensus 201 ~~~v~~l~~~~l~~P 215 (222)
T d2j0sa1 201 PHEILEMTNKFMTDP 215 (222)
T ss_dssp CHHHHTTGGGTCSSC
T ss_pred CHHHHHHHHHHCCCC
Confidence 999999999999985
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-34 Score=287.06 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=159.6
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFR 308 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~k 308 (754)
.++|++++|++.|++++.++ ||.. |||+|+++||.+++|+||+++|+|| +|||.||+||+|+++..
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~----g~~~-pt~iQ~~aip~il~g~dvl~~a~TG---------sGKTlayllP~l~~~~~ 67 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEM----GWEK-PSPIQEESIPIALSGRDILARAKNG---------TGKSGAYLIPLLERLDL 67 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTT----TCCS-CCHHHHHHHHHHHTTCCEEEECCSS---------STTHHHHHHHHHHHCCT
T ss_pred CCChhccCcCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCEEeeccCc---------cccccccccchhhcccc
Confidence 36799999999999999885 8876 9999999999999999999999998 99999999999999753
Q ss_pred cCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCC
Q 004428 309 TRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGT 388 (754)
Q Consensus 309 tr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~ 388 (754)
.+ .+|++|||+||||||.|+.+.+..+...... .+....+|+
T Consensus 68 ~~--------------------------------~~~~~lil~pt~el~~q~~~~~~~~~~~~~~------~~~~~~~g~ 109 (206)
T d1veca_ 68 KK--------------------------------DNIQAMVIVPTRELALQVSQICIQVSKHMGG------AKVMATTGG 109 (206)
T ss_dssp TS--------------------------------CSCCEEEECSCHHHHHHHHHHHHHHTTTSSS------CCEEEECSS
T ss_pred cc--------------------------------cCcceEEEeecchhhHHHHHHHHHHhhcccC------cccccccCC
Confidence 31 3589999999999999999999988653321 111111221
Q ss_pred CccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhh
Q 004428 389 KKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTK 468 (754)
Q Consensus 389 ~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~ 468 (754)
.........+- .++|||||||+||.+++..
T Consensus 110 -----------------------------------------------~~~~~~~~~l~---~~~~ivv~TPgrl~~~~~~ 139 (206)
T d1veca_ 110 -----------------------------------------------TNLRDDIMRLD---DTVHVVIATPGRILDLIKK 139 (206)
T ss_dssp -----------------------------------------------SCHHHHHHHTT---SCCSEEEECHHHHHHHHHT
T ss_pred -----------------------------------------------ccHHHHHHHHH---hccCeEEeCCccccccccc
Confidence 12222222222 4799999999999999872
Q ss_pred hhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 469 AEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 469 ~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
...+++.|++|||||||+|+.++| +.+..|+++ +|++ ||+++||||++
T Consensus 140 -------~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~---~~~~---------------------~Q~~l~SAT~~ 188 (206)
T d1veca_ 140 -------GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT---LPKN---------------------RQILLYSATFP 188 (206)
T ss_dssp -------TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH---SCTT---------------------CEEEEEESCCC
T ss_pred -------hhccccccceEEEeccccccccchHHHHHHHHHh---CCCC---------------------CEEEEEEecCC
Confidence 345799999999999999995444 556666665 4664 89999999999
Q ss_pred HHHHHHHHHhhcCC
Q 004428 548 PEINAFFNHHCANY 561 (754)
Q Consensus 548 peinsL~~~~~~N~ 561 (754)
+++..+++.+++||
T Consensus 189 ~~v~~l~~~~l~~P 202 (206)
T d1veca_ 189 LSVQKFMNSHLEKP 202 (206)
T ss_dssp HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999999996
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-33 Score=283.94 Aligned_cols=205 Identities=17% Similarity=0.226 Sum_probs=162.6
Q ss_pred ccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHH
Q 004428 224 CFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSL 303 (754)
Q Consensus 224 ~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~L 303 (754)
+.++++.+|++++|+++|++++.++ ||.. |||+|+++||.++.|+||+++|+|| +|||.||+||++
T Consensus 6 ~~~e~i~sF~~l~L~~~l~~~L~~~----g~~~-pt~iQ~~aip~il~g~dvl~~a~TG---------sGKTlayllp~l 71 (218)
T d2g9na1 6 NWNEIVDSFDDMNLSESLLRGIYAY----GFEK-PSAIQQRAILPCIKGYDVIAQAQSG---------TGKTATFAISIL 71 (218)
T ss_dssp CCCCCCCCGGGSCCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHHTCCEEEECCTT---------SSHHHHHHHHHH
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCEEEEcccc---------hhhhhhhhhhhh
Confidence 4556788999999999999999886 8876 9999999999999999999999998 999999999999
Q ss_pred HHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccc
Q 004428 304 NHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFC 383 (754)
Q Consensus 304 NHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~ 383 (754)
+|+... ...|++|||+||||||.|+.+.+..++.... .+..
T Consensus 72 ~~i~~~--------------------------------~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~-------~~~~ 112 (218)
T d2g9na1 72 QQIELD--------------------------------LKATQALVLAPTRELAQQIQKVVMALGDYMG-------ASCH 112 (218)
T ss_dssp HHCCTT--------------------------------CCSCCEEEECSSHHHHHHHHHHHHHHHTTTT-------CCEE
T ss_pred heeccc--------------------------------ccCccEEEEcccchhhhhHHHHHhhhccccc-------eeEE
Confidence 998432 1368999999999999999999999865442 1222
Q ss_pred cccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHH
Q 004428 384 DEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLH 463 (754)
Q Consensus 384 ~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr 463 (754)
..+++.... ....++. ...+|||||||+||.
T Consensus 113 ~~~~~~~~~-----------------------------------------------~~~~~~~--~~~~~IvV~TP~rl~ 143 (218)
T d2g9na1 113 ACIGGTNVR-----------------------------------------------AEVQKLQ--MEAPHIIVGTPGRVF 143 (218)
T ss_dssp EECC--CCC-----------------------------------------------STTTSSS--SCCCSEEEECHHHHH
T ss_pred eeecccchh-----------------------------------------------HHHHHHh--cCCCEEEEeCChhHH
Confidence 222222110 0001111 146899999999999
Q ss_pred HHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEE
Q 004428 464 QKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLL 542 (754)
Q Consensus 464 ~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllF 542 (754)
.++.+ ...+++.+++|||||||+|+.++| +++..|++. +|++ ||+++|
T Consensus 144 ~~l~~-------~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~---~~~~---------------------~Q~il~ 192 (218)
T d2g9na1 144 DMLNR-------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK---LNSN---------------------TQVVLL 192 (218)
T ss_dssp HHHHT-------TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHH---SCTT---------------------CEEEEE
T ss_pred HHHhc-------CCcccccceEEEeeecchhhcCchHHHHHHHHHh---CCCC---------------------CeEEEE
Confidence 99972 355799999999999999996554 456666554 4654 899999
Q ss_pred cCCCCHHHHHHHHHhhcCC
Q 004428 543 SYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 543 SAt~~peinsL~~~~~~N~ 561 (754)
|||+++++..+.+++++|+
T Consensus 193 SAT~~~~v~~~~~~~l~~p 211 (218)
T d2g9na1 193 SATMPSDVLEVTKKFMRDP 211 (218)
T ss_dssp ESCCCHHHHHHHHHHCSSC
T ss_pred EecCCHHHHHHHHHHCCCC
Confidence 9999999999999999985
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=282.03 Aligned_cols=202 Identities=18% Similarity=0.236 Sum_probs=158.8
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|++|+|++.|+++|.++ ||.. |||+|+++||.+++|+||++.|+|| +|||.||++|+++++...
T Consensus 1 s~F~dl~L~~~l~~~l~~~----g~~~-pt~iQ~~aip~il~g~dvl~~A~TG---------sGKTla~~lp~l~~~~~~ 66 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDC----GFEH-PSEVQHECIPQAILGMDVLCQAKSG---------MGKTAVFVLATLQQLEPV 66 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHT----TCCC-CCHHHHHHHHHHHTTCCEEEECCTT---------SCHHHHHHHHHHHHCCCC
T ss_pred CCccccCcCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCeEEEeccc---------cccccccccceeeeeccc
Confidence 3699999999999999885 8886 9999999999999999999999998 999999999999987432
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
..+|++|||+||||||.||.+.+..++..... .+....+|+.
T Consensus 67 --------------------------------~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~------~~~~~~~g~~ 108 (207)
T d1t6na_ 67 --------------------------------TGQVSVLVMCHTRELAFQISKEYERFSKYMPN------VKVAVFFGGL 108 (207)
T ss_dssp --------------------------------TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT------CCEEEESCCS
T ss_pred --------------------------------CCCceEEEEeccchhhHHHHHHHHHHHhhCCC------ceeEEEeccc
Confidence 13689999999999999999999998765321 1222223322
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.......++.. ..+||||+||+||..++.+
T Consensus 109 -----------------------------------------------~~~~~~~~l~~--~~~~ilI~TP~rl~~~~~~- 138 (207)
T d1t6na_ 109 -----------------------------------------------SIKKDEEVLKK--NCPHIVVGTPGRILALARN- 138 (207)
T ss_dssp -----------------------------------------------CHHHHHHHHHH--SCCSEEEECHHHHHHHHHT-
T ss_pred -----------------------------------------------cHHHHHHHHHh--cCCCEEEeCcchhhhhccC-
Confidence 22222233332 5799999999999999972
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPE 549 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~pe 549 (754)
....|+.|.+|||||||+|+.+ +.+...|...+..+|++ ||+++||||+++.
T Consensus 139 ------~~~~l~~l~~lVlDEaD~ll~~-~~~~~~i~~I~~~~~~~---------------------~Q~il~SAT~~~~ 190 (207)
T d1t6na_ 139 ------KSLNLKHIKHFILDECDKMLEQ-LDMRRDVQEIFRMTPHE---------------------KQVMMFSATLSKE 190 (207)
T ss_dssp ------TSSCCTTCCEEEEESHHHHHSS-HHHHHHHHHHHHTSCSS---------------------SEEEEEESCCCTT
T ss_pred ------Cceeccccceeehhhhhhhhhc-CCcHHHHHHHHHhCCCC---------------------CEEEEEeeeCCHH
Confidence 3446999999999999999953 22233333444445664 8999999999999
Q ss_pred HHHHHHHhhcCC
Q 004428 550 INAFFNHHCANY 561 (754)
Q Consensus 550 insL~~~~~~N~ 561 (754)
+..+++.+++||
T Consensus 191 v~~l~~~~l~~P 202 (207)
T d1t6na_ 191 IRPVCRKFMQDP 202 (207)
T ss_dssp THHHHHTTCSSC
T ss_pred HHHHHHHHCCCC
Confidence 999999999995
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-33 Score=278.33 Aligned_cols=204 Identities=18% Similarity=0.220 Sum_probs=162.2
Q ss_pred cccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHH
Q 004428 223 ECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHS 302 (754)
Q Consensus 223 ~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~ 302 (754)
.+.|+.+.+|+++||++.|++++.++ ||.. |||+|+.+||.++.|+||+++++|| +|||.||+||+
T Consensus 3 ~~~~~~~~sF~~l~l~~~l~~~L~~~----g~~~-pt~iQ~~aip~il~g~dvl~~a~TG---------sGKT~a~~lp~ 68 (212)
T d1qdea_ 3 TNYDKVVYKFDDMELDENLLRGVFGY----GFEE-PSAIQQRAIMPIIEGHDVLAQAQSG---------TGKTGTFSIAA 68 (212)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHHHHH
T ss_pred CCCcccccChhhCCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCEEeecccc---------cchhhhhHhhh
Confidence 46788899999999999999999886 8986 9999999999999999999999998 99999999999
Q ss_pred HHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCccccccccccccc
Q 004428 303 LNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRF 382 (754)
Q Consensus 303 LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf 382 (754)
++|+... ...|++|||+|||++|.|+...+..+..... .+.
T Consensus 69 i~~l~~~--------------------------------~~~~~~lil~pt~el~~q~~~~~~~~~~~~~-------~~~ 109 (212)
T d1qdea_ 69 LQRIDTS--------------------------------VKAPQALMLAPTRELALQIQKVVMALAFHMD-------IKV 109 (212)
T ss_dssp HHHCCTT--------------------------------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-------CCE
T ss_pred Hhhhhcc--------------------------------CCCcceEEEcccHHHhhhhhhhhcccccccc-------cce
Confidence 9998432 1369999999999999999999998865431 122
Q ss_pred ccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhH
Q 004428 383 CDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINL 462 (754)
Q Consensus 383 ~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgL 462 (754)
....|+... .-.+..+ .++||||+||++|
T Consensus 110 ~~~~~~~~~---------------------------------------------~~~~~~~------~~~~IvI~TP~~l 138 (212)
T d1qdea_ 110 HACIGGTSF---------------------------------------------VEDAEGL------RDAQIVVGTPGRV 138 (212)
T ss_dssp EEECC-------------------------------------------------------C------TTCSEEEECHHHH
T ss_pred eeEeeccch---------------------------------------------hHHHHHh------cCCcEEEECCCcc
Confidence 222221100 0011111 3689999999999
Q ss_pred HHHHhhhhcccccCcccCCceeEEEEecchhhhhc-CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEE
Q 004428 463 HQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ-NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVL 541 (754)
Q Consensus 463 r~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ-Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTll 541 (754)
..++.. ....|++++++||||||.|+.. +-+++..|++. +|+. ||+++
T Consensus 139 ~~~~~~-------~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~---~~~~---------------------~Q~vl 187 (212)
T d1qdea_ 139 FDNIQR-------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL---LPPT---------------------TQVVL 187 (212)
T ss_dssp HHHHHT-------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH---SCTT---------------------CEEEE
T ss_pred cccccc-------CceecCcceEEeehhhhhhcccchHHHHHHHHHh---CCCC---------------------CeEEE
Confidence 999873 3447999999999999999954 44566666654 4654 89999
Q ss_pred EcCCCCHHHHHHHHHhhcCC
Q 004428 542 LSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 542 FSAt~~peinsL~~~~~~N~ 561 (754)
||||+++.+..+++++|+||
T Consensus 188 ~SAT~~~~v~~l~~~~l~~P 207 (212)
T d1qdea_ 188 LSATMPNDVLEVTTKFMRNP 207 (212)
T ss_dssp EESSCCHHHHHHHHHHCSSC
T ss_pred EEeeCCHHHHHHHHHHCCCC
Confidence 99999999999999999995
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=2.2e-33 Score=285.59 Aligned_cols=221 Identities=19% Similarity=0.240 Sum_probs=170.9
Q ss_pred CCCcccCCCCCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHH
Q 004428 220 GTGECFLKDDNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYL 299 (754)
Q Consensus 220 ~~~~~~~~~~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~ 299 (754)
++..+.|+++.+|+++||++.|+++|.++ |+.. |||+|+++||.+++|+||+.+|+|| +|||.||+
T Consensus 11 ~~~~~~~~~~~~F~~l~l~~~l~~~L~~~----g~~~-pt~iQ~~~ip~il~g~dvvi~a~TG---------sGKTlayl 76 (238)
T d1wrba1 11 GPDYSATNVIENFDELKLDPTIRNNILLA----SYQR-PTPIQKNAIPAILEHRDIMACAQTG---------SGKTAAFL 76 (238)
T ss_dssp CCSSSCCSCCCSSGGGSCCCSTTTTTTTT----TCCS-CCHHHHHHHHHHHTTCCEEEECCTT---------SSHHHHHH
T ss_pred CCCCCCCCccCCHHHCCCCHHHHHHHHHC----CCCC-CCHHHHHHhhhhhCCCCEEEECCCC---------CCcceeeH
Confidence 34456777889999999999999998764 8876 9999999999999999999999998 99999999
Q ss_pred HHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccc
Q 004428 300 MHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHI 379 (754)
Q Consensus 300 Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk 379 (754)
||+|+|+++.+..- .+......|++|||+||||||.|+.+.+..++....
T Consensus 77 lp~l~~l~~~~~~~-----------------------~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~------- 126 (238)
T d1wrba1 77 IPIINHLVCQDLNQ-----------------------QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP------- 126 (238)
T ss_dssp HHHHHHHHTTCC-----------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-------
T ss_pred HHHHHHHHhccccc-----------------------ccccCCCCceEEEeccchhhhcchheeeeecccCCC-------
Confidence 99999998753210 011123579999999999999999999998865432
Q ss_pred cccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCc
Q 004428 380 DRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASP 459 (754)
Q Consensus 380 ~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASP 459 (754)
.|....+|+.. .. ...+.. ..++||||+||
T Consensus 127 ~~~~~~~g~~~-----------------------------------------------~~-~~~~~~--~~~~~ivV~TP 156 (238)
T d1wrba1 127 LRSCVVYGGAD-----------------------------------------------TH-SQIREV--QMGCHLLVATP 156 (238)
T ss_dssp CCEEEECSSSC-----------------------------------------------SH-HHHHHH--SSCCSEEEECH
T ss_pred cEEEEEeccch-----------------------------------------------hh-HHHhhc--ccCCceeecCH
Confidence 12222333221 11 111111 25799999999
Q ss_pred hhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCcccc
Q 004428 460 INLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQ 538 (754)
Q Consensus 460 lgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQ 538 (754)
+||..++.. ....|+.+.++||||||+|+.++| +++..|++.++.... ..||
T Consensus 157 ~~l~~~~~~-------~~~~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~--------------------~~~Q 209 (238)
T d1wrba1 157 GRLVDFIEK-------NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG--------------------INRQ 209 (238)
T ss_dssp HHHHHHHHT-------TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCG--------------------GGCE
T ss_pred HHHHhHHcc-------CceeccccceeeeehhhhhhhhccHHHHHHHHHHhcCCCC--------------------CCCE
Confidence 999999973 234599999999999999996555 678888877654321 2389
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCC
Q 004428 539 TVLLSYHPNPEINAFFNHHCANY 561 (754)
Q Consensus 539 TllFSAt~~peinsL~~~~~~N~ 561 (754)
+++||||++.++..|++++++||
T Consensus 210 ~il~SAT~~~~v~~l~~~~~~~p 232 (238)
T d1wrba1 210 TLMFSATFPKEIQKLAADFLYNY 232 (238)
T ss_dssp EEEEESSCCHHHHHHHHHHCSSC
T ss_pred EEEEeeeCCHHHHHHHHHHCCCC
Confidence 99999999999999999999985
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=9.3e-31 Score=260.20 Aligned_cols=197 Identities=15% Similarity=0.234 Sum_probs=156.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCc-cEEEecCCCCccCCCCCCchhHHHHHHHHHHHHh
Q 004428 229 DNLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYR-DILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIF 307 (754)
Q Consensus 229 ~~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~-Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ 307 (754)
.++|+++||++.|++++.++ |+.. |||+|+++||.+++|+ |++++++|| +|||.+|+++++++..
T Consensus 3 ~msf~~l~l~~~l~~~l~~~----g~~~-pt~iQ~~~ip~~l~g~~d~iv~a~TG---------sGKT~~~~l~~~~~~~ 68 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNK----GFEK-PTDIQMKVIPLFLNDEYNIVAQARTG---------SGKTASFAIPLIELVN 68 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHH----TCCS-CCHHHHHHHHHHHHTCSEEEEECCSS---------SSHHHHHHHHHHHHSC
T ss_pred ccCHHHcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCCeeeechhc---------ccccceeecccccccc
Confidence 46899999999999999886 8876 9999999999998875 999999998 8999999999998764
Q ss_pred hcCCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccC
Q 004428 308 RTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFG 387 (754)
Q Consensus 308 ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg 387 (754)
.. .+|++|||+|||+||.|+.+.+.++..... .+....+|
T Consensus 69 ~~---------------------------------~~~~~lil~pt~~l~~q~~~~~~~~~~~~~-------~~v~~~~g 108 (208)
T d1hv8a1 69 EN---------------------------------NGIEAIILTPTRELAIQVADEIESLKGNKN-------LKIAKIYG 108 (208)
T ss_dssp SS---------------------------------SSCCEEEECSCHHHHHHHHHHHHHHHCSSC-------CCEEEECT
T ss_pred cc---------------------------------cCcceEEEeeccccchhhhhhhhhhcccCC-------eEEEEeeC
Confidence 21 258999999999999999999999865432 12222233
Q ss_pred CCccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHh
Q 004428 388 TKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMT 467 (754)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~ 467 (754)
+. .. ..+.+.. .++|||||||++|.+++.
T Consensus 109 ~~-----------------------------------------------~~-~~~~~~l---~~~~IlV~TP~~l~~~l~ 137 (208)
T d1hv8a1 109 GK-----------------------------------------------AI-YPQIKAL---KNANIVVGTPGRILDHIN 137 (208)
T ss_dssp TS-----------------------------------------------CH-HHHHHHH---HTCSEEEECHHHHHHHHH
T ss_pred CC-----------------------------------------------Ch-HHHHHhc---CCCCEEEEChHHHHHHHH
Confidence 21 11 1122222 369999999999999997
Q ss_pred hhhcccccCcccCCceeEEEEecchhhhh-cCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCC
Q 004428 468 KAEENKEQDVDYLSSIEVLIIDHADIILM-QNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHP 546 (754)
Q Consensus 468 ~~e~~k~rd~dfLSSIEiLVlDeAD~mLm-QNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~ 546 (754)
. ....|+.|++|||||||.|+. +..+++..|++. +|++ +|+++||||+
T Consensus 138 ~-------~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~---~~~~---------------------~Q~i~~SAT~ 186 (208)
T d1hv8a1 138 R-------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNA---CNKD---------------------KRILLFSATM 186 (208)
T ss_dssp T-------TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHT---SCSS---------------------CEEEEECSSC
T ss_pred c-------CCCCcccCcEEEEEChHHhhcCCChHHHHHHHHh---CCCC---------------------CeEEEEEccC
Confidence 3 234589999999999999984 445667776654 4553 8999999999
Q ss_pred CHHHHHHHHHhhcCC
Q 004428 547 NPEINAFFNHHCANY 561 (754)
Q Consensus 547 ~peinsL~~~~~~N~ 561 (754)
++++..+++++++|+
T Consensus 187 ~~~v~~~~~~~l~~~ 201 (208)
T d1hv8a1 187 PREILNLAKKYMGDY 201 (208)
T ss_dssp CHHHHHHHHHHCCSE
T ss_pred CHHHHHHHHHHCCCC
Confidence 999999999999986
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.7e-30 Score=254.21 Aligned_cols=198 Identities=20% Similarity=0.310 Sum_probs=158.2
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
.+|.+|+|++.|++++.++ ||.. |||+|+++||.+++|+||++.|+|| +|||.||++|+++|+.+.
T Consensus 1 ~sF~~l~L~~~l~~~L~~~----g~~~-pt~iQ~~aip~il~g~dvi~~a~tG---------sGKTlay~lp~i~~~~~~ 66 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEA----GFEK-PSPIQEEAIPVAITGRDILARAKNG---------TGKTAAFVIPTLEKVKPK 66 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHHTCCEEEECCTT---------SCHHHHHHHHHHHHCCTT
T ss_pred CChHHcCCCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHcCCCEEEecCCc---------chhhhhhccccccccccc
Confidence 4799999999999999885 8886 9999999999999999999999998 899999999999998543
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+ .++++++++|++++|.++...+..+..... .|....+|+.
T Consensus 67 ~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~ 107 (206)
T d1s2ma1 67 L--------------------------------NKIQALIMVPTRELALQTSQVVRTLGKHCG-------ISCMVTTGGT 107 (206)
T ss_dssp S--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTTT-------CCEEEECSSS
T ss_pred c--------------------------------ccccceeeccchhhhhhhhhhhhhcccccC-------eeEEeecCcc
Confidence 1 257899999999999999999988765432 1333333332
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
....+...+- .++|||||||++|..++..
T Consensus 108 -----------------------------------------------~~~~~~~~l~---~~~~Ili~TP~~l~~~l~~- 136 (206)
T d1s2ma1 108 -----------------------------------------------NLRDDILRLN---ETVHILVGTPGRVLDLASR- 136 (206)
T ss_dssp -----------------------------------------------CHHHHHHHTT---SCCSEEEECHHHHHHHHHT-
T ss_pred -----------------------------------------------chhhHHHHhc---ccceEEEECCccccccccc-
Confidence 1122222221 5799999999999999973
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcCc-hHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQNW-SWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw-~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
....|+.+++|||||||.|+.++| +++..| ++.+|++ ||+++||||+++
T Consensus 137 ------~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I---~~~l~~~---------------------~Q~il~SATl~~ 186 (206)
T d1s2ma1 137 ------KVADLSDCSLFIMDEADKMLSRDFKTIIEQI---LSFLPPT---------------------HQSLLFSATFPL 186 (206)
T ss_dssp ------TCSCCTTCCEEEEESHHHHSSHHHHHHHHHH---HTTSCSS---------------------CEEEEEESCCCH
T ss_pred ------ceeecccceEEEeechhhhhhhhhHHHHHHH---HHhCCCC---------------------CEEEEEEEeCCH
Confidence 344699999999999999995533 345544 4556764 899999999999
Q ss_pred HHHHHHHHhhcCC
Q 004428 549 EINAFFNHHCANY 561 (754)
Q Consensus 549 einsL~~~~~~N~ 561 (754)
++..+++++++||
T Consensus 187 ~v~~~~~~~l~~P 199 (206)
T d1s2ma1 187 TVKEFMVKHLHKP 199 (206)
T ss_dssp HHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCC
Confidence 9999999999985
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=1.9e-28 Score=241.38 Aligned_cols=202 Identities=12% Similarity=0.219 Sum_probs=155.4
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhc
Q 004428 230 NLYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRT 309 (754)
Q Consensus 230 ~~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~kt 309 (754)
++|+++||++.|++++.+. |+.. |||+|+++||.+++|+||+++|+|| +|||.||++|+++++.+.
T Consensus 1 t~F~~l~L~~~l~~~l~~~----g~~~-pt~iQ~~aip~~l~G~dvii~a~TG---------SGKTlayllp~l~~~~~~ 66 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTL----RFYK-PTEIQERIIPGALRGESMVGQSQTG---------TGKTHAYLLPIMEKIKPE 66 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHT----TCCS-CCHHHHHHHHHHHHTCCEEEECCSS---------HHHHHHHHHHHHHHCCTT
T ss_pred CccccCCcCHHHHHHHHHC----CCCC-CCHHHHHHHHHHHCCCCeEeecccc---------cccceeeeeeeccccccc
Confidence 3699999999999999874 8876 9999999999999999999999998 999999999999988643
Q ss_pred CCccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCC
Q 004428 310 RDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTK 389 (754)
Q Consensus 310 r~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~ 389 (754)
+ ..+.+++++|+++++.+....+......... ....+
T Consensus 67 ~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------- 103 (209)
T d1q0ua_ 67 R--------------------------------AEVQAVITAPTRELATQIYHETLKITKFCPK---DRMIV-------- 103 (209)
T ss_dssp S--------------------------------CSCCEEEECSSHHHHHHHHHHHHHHHTTSCG---GGCCC--------
T ss_pred c--------------------------------ccccccccccccchhHHHHHHHHhhhccccc---ccccc--------
Confidence 1 3578999999999999999998876443210 00000
Q ss_pred ccccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhh
Q 004428 390 KEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKA 469 (754)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~ 469 (754)
.....|+.+ ... ... ....++||||+||++|..++.+
T Consensus 104 -------------------------------~~~~~~~~~--------~~~-~~~--~~~~~~~Ilv~TP~~l~~~~~~- 140 (209)
T d1q0ua_ 104 -------------------------------ARCLIGGTD--------KQK-ALE--KLNVQPHIVIGTPGRINDFIRE- 140 (209)
T ss_dssp -------------------------------EEEECCCSH--------HHH-TTC--CCSSCCSEEEECHHHHHHHHHT-
T ss_pred -------------------------------ccccccchh--------hHH-HHH--HhccCceEEEecCchhhhhhhh-
Confidence 111111110 000 011 1125799999999999998862
Q ss_pred hcccccCcccCCceeEEEEecchhhhhcC-chHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCH
Q 004428 470 EENKEQDVDYLSSIEVLIIDHADIILMQN-WSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNP 548 (754)
Q Consensus 470 e~~k~rd~dfLSSIEiLVlDeAD~mLmQN-w~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~p 548 (754)
...+++.+.+|||||||.|+..+ .+++..|+.. +|++ +|+++||||+++
T Consensus 141 ------~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~---~~~~---------------------~Q~il~SATl~~ 190 (209)
T d1q0ua_ 141 ------QALDVHTAHILVVDEADLMLDMGFITDVDQIAAR---MPKD---------------------LQMLVFSATIPE 190 (209)
T ss_dssp ------TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHT---SCTT---------------------CEEEEEESCCCG
T ss_pred ------hccccccceEEEEeecccccccccHHHHHHHHHH---CCCC---------------------CEEEEEEccCCH
Confidence 45579999999999999999543 4566666554 4654 899999999999
Q ss_pred HHHHHHHHhhcCC
Q 004428 549 EINAFFNHHCANY 561 (754)
Q Consensus 549 einsL~~~~~~N~ 561 (754)
++..+++++++||
T Consensus 191 ~v~~l~~~~l~~p 203 (209)
T d1q0ua_ 191 KLKPFLKKYMENP 203 (209)
T ss_dssp GGHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCC
Confidence 9999999999995
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.92 E-value=1.4e-24 Score=221.79 Aligned_cols=274 Identities=10% Similarity=0.053 Sum_probs=183.9
Q ss_pred hhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceE
Q 004428 268 LCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKV 347 (754)
Q Consensus 268 ~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkV 347 (754)
++..+++++..++|| +|||.+|+++++.+.++. +++|
T Consensus 5 ~~~~~~~~lv~~~TG---------sGKT~~~l~~~~~~~~~~----------------------------------~~~~ 41 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPG---------AGKTKRYLPAIVREAIKR----------------------------------GLRT 41 (305)
T ss_dssp SSSTTCEEEECCCTT---------SSTTTTHHHHHHHHHHHH----------------------------------TCCE
T ss_pred HhhcCCcEEEEECCC---------CCHHHHHHHHHHHHHHhc----------------------------------CCEE
Confidence 356899999999998 899999999999888643 3579
Q ss_pred EEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCCCCceeeccCC
Q 004428 348 LILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGN 427 (754)
Q Consensus 348 LIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN 427 (754)
|||+|||+||.|+.+.|..+..... .
T Consensus 42 lvi~Ptr~La~q~~~~l~~~~~~~~---------------~--------------------------------------- 67 (305)
T d2bmfa2 42 LILAPTRVVAAEMEEALRGLPIRYQ---------------T--------------------------------------- 67 (305)
T ss_dssp EEEESSHHHHHHHHHHTTTSCCBCC---------------C---------------------------------------
T ss_pred EEEccHHHHHHHHHHHHhcCCccee---------------e---------------------------------------
Confidence 9999999999999887655432110 0
Q ss_pred CCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHH
Q 004428 428 NDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVE 507 (754)
Q Consensus 428 ~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~ 507 (754)
..... ..+ ....|+++||+.|...+. ....+..+.++|+||||.|....+. +..++.
T Consensus 68 --------~~~~~----~~~--~~~~i~~~t~~~l~~~~~--------~~~~~~~~~~vViDE~H~~~~~~~~-~~~~l~ 124 (305)
T d2bmfa2 68 --------PAIRA----EHT--GREIVDLMCHATFTMRLL--------SPIRVPNYNLIIMDEAHFTDPASIA-ARGYIS 124 (305)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHT--------SSSCCCCCSEEEEESTTCCSHHHHH-HHHHHH
T ss_pred --------eEEee----ccc--CccccccCCcHHHHHHHh--------cCccccceeEEEeeeeeecchhhHH-HHHHHH
Confidence 00000 011 357899999999988764 2345789999999999988631111 122222
Q ss_pred HhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcCCCceEEEeecccCcccccccceeEEEE
Q 004428 508 QLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCANYQGKVKLACEYKGVLPKVLLNVRQIYE 587 (754)
Q Consensus 508 ~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N~~G~Vkv~~~~~g~i~~v~~~I~Q~f~ 587 (754)
.+...| -.|++++|||.+..... ++.... .+. ....
T Consensus 125 ~~~~~~----------------------~~~~v~~SAT~~~~~~~----~~~~~~-~~~-----------------~~~~ 160 (305)
T d2bmfa2 125 TRVEMG----------------------EAAGIFMTATPPGSRDP----FPQSNA-PIM-----------------DEER 160 (305)
T ss_dssp HHHHHT----------------------SCEEEEECSSCTTCCCS----SCCCSS-CEE-----------------EEEC
T ss_pred Hhhccc----------------------cceEEEeecCCCcceee----ecccCC-cce-----------------EEEE
Confidence 221111 27899999998753211 011100 011 0000
Q ss_pred EeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC
Q 004428 588 RFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEG 667 (754)
Q Consensus 588 r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G 667 (754)
.+...... ..+-.+ ....+++||||++..+..++.+.|++.++.+..+|+.+.+.. +..|++|
T Consensus 161 ~~~~~~~~------------~~~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~----~~~~~~~ 223 (305)
T d2bmfa2 161 EIPERSWN------------SGHEWV-TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSE----YIKTRTN 223 (305)
T ss_dssp CCCCSCCS------------SCCHHH-HSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHH----GGGGGTS
T ss_pred eccHHHHH------------HHHHHH-HhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHH----Hhhhhcc
Confidence 01100000 011111 234688999999999999999999999999999999886544 5578999
Q ss_pred CccEEEEcccccccCccccCCCCeEE----------EccCCC----------CCCchhhhccccCCCCC-ceEEEEech
Q 004428 668 KRKMILYTERSHFYHRYKIRGIQNLI----------IYSLPE----------RKEFYPEIVNMLEGSHN-MTCTVLFSR 725 (754)
Q Consensus 668 ~~~ILL~TErahffRr~dIkgV~~VI----------fY~lP~----------~pefY~erigrt~ra~~-g~~~~L~sk 725 (754)
..++||+|+.+. +|++| ++++|| +|++|. ++.-|.||+||+||.+. +....+|+.
T Consensus 224 ~~~~lvaT~~~~--~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~ 299 (305)
T d2bmfa2 224 DWDFVVTTDISE--MGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMG 299 (305)
T ss_dssp CCSEEEECGGGG--TTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECS
T ss_pred chhhhhhhHHHH--hcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECC
Confidence 999999999999 99999 566654 566654 45567899999999884 556677764
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.1e-24 Score=205.24 Aligned_cols=144 Identities=14% Similarity=0.197 Sum_probs=122.0
Q ss_pred eeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHH
Q 004428 582 VRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRAR 661 (754)
Q Consensus 582 I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar 661 (754)
|+|.|+.++. .+.|+..+.. ++.. ....++||||+|...+..|.++|...++++..+|+.+++.+|.+++
T Consensus 1 I~q~~~~v~~------~e~K~~~L~~-ll~~---~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l 70 (162)
T d1fuka_ 1 IKQFYVNVEE------EEYKYECLTD-LYDS---ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 70 (162)
T ss_dssp CEEEEEEEES------GGGHHHHHHH-HHHH---TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CEEEEEEeCC------cHHHHHHHHH-HHHh---CCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHH
Confidence 6899988753 2446654432 4333 3467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHH---HHHHhCc
Q 004428 662 VWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLR---LERIVGS 737 (754)
Q Consensus 662 ~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~---LErIVGt 737 (754)
..|+.|+.+|||+||+++ ||+||++|++|||||+|.+++.|.||+||+||.+ .|.|++|++..|... ||+..+.
T Consensus 71 ~~f~~~~~~iLv~Tdv~~--rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 148 (162)
T d1fuka_ 71 KEFRSGSSRILISTDLLA--RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 148 (162)
T ss_dssp HHHHTTSCSEEEEEGGGT--TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSC
T ss_pred HHHhhcccceeecccccc--ccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcC
Confidence 999999999999999999 9999999999999999999999999999999988 699999999988654 4555444
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.9e-24 Score=203.84 Aligned_cols=144 Identities=12% Similarity=0.169 Sum_probs=126.8
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
+.+|+|.|..++.. +.|+..+.. + +......++||||++...+..+..+|.+.++++..+|+.+++.+|.
T Consensus 5 l~~i~q~~v~v~~~------~~K~~~L~~-l---l~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 74 (168)
T d2j0sa2 5 LEGIKQFFVAVERE------EWKFDTLCD-L---YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERE 74 (168)
T ss_dssp CTTEEEEEEEESST------THHHHHHHH-H---HHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred CCCcEEEEEEecCh------HHHHHHHHH-H---HHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHH
Confidence 57899999988643 346654332 3 3334567999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 659 RARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 659 rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
+++..|++|+.+|||+||.++ ||+||++|++|||||+|.+++.|.||+||+||.+ .|.|++++++.|...+..|
T Consensus 75 ~~~~~fk~g~~~iLv~Td~~~--rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i 149 (168)
T d2j0sa2 75 SIMKEFRSGASRVLISTDVWA--RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 149 (168)
T ss_dssp HHHHHHHHTSSCEEEECGGGS--SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHH
T ss_pred HHHHHHhcCCccEEeccchhc--ccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999987 6999999999998666544
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.88 E-value=1.1e-22 Score=192.94 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=124.7
Q ss_pred cceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHH
Q 004428 580 LNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISR 659 (754)
Q Consensus 580 ~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~r 659 (754)
.+|+|.|..++. +.|+.. |-.+.+....++||||++...+..|..+|++.++.+..+|+.+++.+|.+
T Consensus 2 ~nI~~~~i~v~~-------~~K~~~-----L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~ 69 (155)
T d1hv8a2 2 ANIEQSYVEVNE-------NERFEA-----LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREK 69 (155)
T ss_dssp SSSEEEEEECCG-------GGHHHH-----HHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHH
T ss_pred CCeEEEEEEeCh-------HHHHHH-----HHHHHccCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhh
Confidence 469999999864 235653 33344455678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHH
Q 004428 660 ARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLER 733 (754)
Q Consensus 660 ar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LEr 733 (754)
++..|++|+.+|||+||.++ ||+||++|++||+|++|.++..|.||+||+||.+ .|.|++|+++.|...|..
T Consensus 70 ~~~~f~~~~~~ilv~T~~~~--~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~ 142 (155)
T d1hv8a2 70 VIRLFKQKKIRILIATDVMS--RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY 142 (155)
T ss_dssp HHHHHHTTSSSEEEECTTHH--HHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHH
T ss_pred hhhhhhcccceeeeehhHHh--hhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999987 799999999998766643
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.5e-22 Score=195.29 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=126.7
Q ss_pred ccceeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 004428 579 LLNVRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDIS 658 (754)
Q Consensus 579 ~~~I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~ 658 (754)
+..|+|.|..++. +.|+..+.. + |......++||||++...+..|..+|...++.+..+|+.+++.+|.
T Consensus 4 l~~i~q~yi~v~~-------~~K~~~L~~-l---l~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~ 72 (171)
T d1s2ma2 4 LKGITQYYAFVEE-------RQKLHCLNT-L---FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN 72 (171)
T ss_dssp CTTEEEEEEECCG-------GGHHHHHHH-H---HHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHH
T ss_pred ccceEEEEEEcCH-------HHHHHHHHH-H---HHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhh
Confidence 4579999998753 235543222 3 3344568999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHH---HHH
Q 004428 659 RARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRL---ERI 734 (754)
Q Consensus 659 rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~L---ErI 734 (754)
+++..|++|+.+|||+||.++ ||+||++|++||||++|.++..|.||+||+||.+ .|.|++|+++.|...+ ++.
T Consensus 73 ~~~~~f~~~~~~ilv~Td~~~--~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~ 150 (171)
T d1s2ma2 73 KVFHEFRQGKVRTLVCSDLLT--RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQE 150 (171)
T ss_dssp HHHHHHHTTSSSEEEESSCSS--SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHH
T ss_pred hhhhhcccCccccccchhHhh--hccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999987 7999999999886544 555
Q ss_pred hCch
Q 004428 735 VGSA 738 (754)
Q Consensus 735 VGt~ 738 (754)
+|.+
T Consensus 151 l~~~ 154 (171)
T d1s2ma2 151 LGTE 154 (171)
T ss_dssp HTCC
T ss_pred HCCC
Confidence 5544
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.3e-22 Score=196.96 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=115.2
Q ss_pred HhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCC
Q 004428 609 VFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRG 688 (754)
Q Consensus 609 iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkg 688 (754)
|+..|......++||||+|+..+..|..+|+..++.+..+|+.+++.+|.+++..|++|+++|||+||.++ ||+||++
T Consensus 21 L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~~--~GiD~p~ 98 (200)
T d1oywa3 21 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG--MGINKPN 98 (200)
T ss_dssp HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC--TTTCCTT
T ss_pred HHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchhh--hccCCCC
Confidence 44434444567899999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 689 IQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 689 V~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
|++||||++|.+++.|.||+||+||++ .|.|++||++.|...|++++
T Consensus 99 v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i 146 (200)
T d1oywa3 99 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 146 (200)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhh
Confidence 999999999999999999999999988 79999999999988776653
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.9e-21 Score=183.93 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=117.8
Q ss_pred eeEEEEEeccCcccchhHHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHH
Q 004428 582 VRQIYERFNADSIAKADDARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRAR 661 (754)
Q Consensus 582 I~Q~f~r~~~~s~~~~~d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar 661 (754)
|+|.|..++. +.|+..+.. +| ......++||||++......|..+|.+.++.+..||+.+++.+|..++
T Consensus 2 l~q~~v~~~~-------~~K~~~L~~-ll---~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l 70 (168)
T d1t5ia_ 2 LQQYYVKLKD-------NEKNRKLFD-LL---DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 70 (168)
T ss_dssp CEEEEEECCG-------GGHHHHHHH-HH---HHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cEEEEEEeCh-------HHHHHHHHH-HH---HhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhh
Confidence 7899999864 335543222 33 333567999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccEEEEcccccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC-CceEEEEechhc
Q 004428 662 VWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFD 727 (754)
Q Consensus 662 ~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D 727 (754)
..|++|+.+|||+|+.++ +|++|+++.+||||++|.++..|.||+||+||.+ .|.|++|++..+
T Consensus 71 ~~F~~g~~~iLv~T~~~~--~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 71 QQFKDFQRRILVATNLFG--RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 135 (168)
T ss_dssp HHHHTTSCSEEEESSCCS--TTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred hhhccccceeeecccccc--chhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchH
Confidence 999999999999999999 9999999999999999999999999999999987 689999998754
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.81 E-value=5.1e-20 Score=180.25 Aligned_cols=108 Identities=8% Similarity=-0.004 Sum_probs=99.3
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||++..+...|..+|++.|+++..+|+.++|.+|.+++..|++|+++||||||+|+ ||+||++|++|||||
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~--rGiDip~v~~VI~~d 107 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR--EGLDIPEVSLVAILD 107 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCS--SSCCCTTEEEEEETT
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHH--ccCCCCCCCEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCC-----CCCchhhhccccCCCCCceEEEEechh
Q 004428 697 LPE-----RKEFYPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 697 lP~-----~pefY~erigrt~ra~~g~~~~L~sk~ 726 (754)
+|. ++..|.||+||+||.+.+.+..++...
T Consensus 108 ~p~~~~~~s~~~yi~R~GRagR~g~~~~~~~~~~~ 142 (181)
T d1t5la2 108 ADKEGFLRSERSLIQTIGRAARNANGHVIMYADTI 142 (181)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CCcccccccHHHHHHHHHhhccccCceeEeecchh
Confidence 996 457789999999998877766665543
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=1.5e-19 Score=180.63 Aligned_cols=200 Identities=11% Similarity=0.143 Sum_probs=129.0
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhh
Q 004428 241 LYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKV 320 (754)
Q Consensus 241 L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl 320 (754)
+.+.+.+.+++ ++.. |+|+|+.++|.++.|+|++.+++|| +|||.+|+++++.++.+
T Consensus 29 ~~~~~~~~~~~-~~~~-p~~~Q~~~i~~~l~g~~~~i~apTG---------sGKT~~~~~~~~~~~~~------------ 85 (237)
T d1gkub1 29 LLKEFVEFFRK-CVGE-PRAIQKMWAKRILRKESFAATAPTG---------VGKTSFGLAMSLFLALK------------ 85 (237)
T ss_dssp HHHHHHHHHHT-TTCS-CCHHHHHHHHHHHTTCCEECCCCBT---------SCSHHHHHHHHHHHHTT------------
T ss_pred hHHHHHHHHHh-ccCC-CCHHHHHHHHHHHCCCCEEEEecCC---------ChHHHHHHHHHHHHHHh------------
Confidence 44445554433 5555 8999999999999999999999998 89999999999876531
Q ss_pred hhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchh
Q 004428 321 AKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDA 400 (754)
Q Consensus 321 ~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~ 400 (754)
++|||||+|||+||.|+.+.+.+++.... +.+ ....+
T Consensus 86 -----------------------~~rvliv~Pt~~La~Q~~~~l~~~~~~~~-~~~------~~~~~------------- 122 (237)
T d1gkub1 86 -----------------------GKRCYVIFPTSLLVIQAAETIRKYAEKAG-VGT------ENLIG------------- 122 (237)
T ss_dssp -----------------------SCCEEEEESCHHHHHHHHHHHHHHHTTTC-CSG------GGSEE-------------
T ss_pred -----------------------cCeEEEEeccHHHHHHHHHHHHHHHHHcC-Cce------EEEEe-------------
Confidence 25799999999999999999999865432 101 00111
Q ss_pred hhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccC
Q 004428 401 SQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYL 480 (754)
Q Consensus 401 ~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfL 480 (754)
.+.|+. . .....++......+||||+||.+|... .+.+
T Consensus 123 ----------------------~~~~~~--------~-~~~~~~~l~~~~~~~Ilv~Tp~~l~~~-----------~~~~ 160 (237)
T d1gkub1 123 ----------------------YYHGRI--------P-KREKENFMQNLRNFKIVITTTQFLSKH-----------YREL 160 (237)
T ss_dssp ----------------------ECCSSC--------C-SHHHHHHHHSGGGCSEEEEEHHHHHHC-----------STTS
T ss_pred ----------------------eeeccc--------c-hhhhhhhhccccccceeccChHHHHHh-----------hhhc
Confidence 011100 0 111222233335689999999998653 3457
Q ss_pred CceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhhcC
Q 004428 481 SSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHCAN 560 (754)
Q Consensus 481 SSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~~N 560 (754)
+.++++||||||.|+... ..+..++..+...+ +++.... ..+..+|.|++|||+++.+...+.+.+.|
T Consensus 161 ~~~~~vVvDE~d~~l~~~-~~~~~~~~~~g~~~---------~~~~~~~--~~~~~~~~i~~SAT~~~~~~~~l~r~ll~ 228 (237)
T d1gkub1 161 GHFDFIFVDDVDAILKAS-KNVDKLLHLLGFHY---------DLKTKSW--VGEARGCLMVSTATAKKGKKAELFRQLLN 228 (237)
T ss_dssp CCCSEEEESCHHHHHTST-HHHHHHHHHTTEEE---------ETTTTEE--EECCSSEEEECCCCSCCCTTHHHHHHHHC
T ss_pred CCCCEEEEEChhhhhhcc-cchhHHHHhcCChH---------HHHHHHh--hCCCCCeEEEEeCCCCcccHHHHHHHHhC
Confidence 889999999999998532 22344444432111 1111111 12335899999999987665444344444
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=7.7e-19 Score=171.06 Aligned_cols=108 Identities=7% Similarity=-0.051 Sum_probs=100.1
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
...++||||+|...+..|..+|.+.|+.+..+|+.+++.+|.+++..|++|+++|||+|++|. ||+||++|++||||+
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~--~GiDip~V~~Vi~~~ 107 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR--EGLDIPEVSLVAILD 107 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCC--TTCCCTTEEEEEETT
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeee--eeccCCCCcEEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCC-----CchhhhccccCCCCCceEEEEechh
Q 004428 697 LPERK-----EFYPEIVNMLEGSHNMTCTVLFSRF 726 (754)
Q Consensus 697 lP~~p-----efY~erigrt~ra~~g~~~~L~sk~ 726 (754)
+|... +-|.|++||+||++.|.+..++...
T Consensus 108 ~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~~ 142 (174)
T d1c4oa2 108 ADKEGFLRSERSLIQTIGRAARNARGEVWLYADRV 142 (174)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred cccccccchhHHHHHHhhhhhhcCCCeeEEeecCC
Confidence 88754 5599999999999988777666544
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=2.1e-17 Score=161.08 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=128.7
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhh
Q 004428 241 LYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKV 320 (754)
Q Consensus 241 L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl 320 (754)
+.+.+.+.++..|+.. ++|.|+++++.+.+|+|++.+++|| +|||.++.++++..+.+
T Consensus 10 ~~~~~~~~l~~~g~~~-l~~~Q~~ai~~l~~~~~~il~apTG---------sGKT~~a~l~i~~~~~~------------ 67 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEE-LFPPQAEAVEKVFSGKNLLLAMPTA---------AGKTLLAEMAMVREAIK------------ 67 (202)
T ss_dssp HHHHHHHHHHCC---C-CCCCCHHHHHHHTTCSCEEEECSSH---------HHHHHHHHHHHHHHHHT------------
T ss_pred hhHHHHHHHHHcCCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------CchhHHHHHHHHHHhhc------------
Confidence 4444444455568876 7999999999999999999999998 99999999999988753
Q ss_pred hhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchh
Q 004428 321 AKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDA 400 (754)
Q Consensus 321 ~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~ 400 (754)
.++||+|+|||+||.|+.+.+.++.+... +.. .+++..
T Consensus 68 -----------------------~~~vl~l~P~~~L~~q~~~~~~~~~~~~~--------~v~-~~~~~~---------- 105 (202)
T d2p6ra3 68 -----------------------GGKSLYVVPLRALAGEKYESFKKWEKIGL--------RIG-ISTGDY---------- 105 (202)
T ss_dssp -----------------------TCCEEEEESSHHHHHHHHHHHTTTTTTTC--------CEE-EECSSC----------
T ss_pred -----------------------cCcceeecccHHHHHHHHHHHHHHhhccc--------cce-eeccCc----------
Confidence 24799999999999999999988765432 111 111110
Q ss_pred hhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccC
Q 004428 401 SQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYL 480 (754)
Q Consensus 401 ~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfL 480 (754)
...... ...++||++||..+..++.. ...++
T Consensus 106 --------------------------------------~~~~~~----~~~~~ii~~~~~~~~~~~~~-------~~~~~ 136 (202)
T d2p6ra3 106 --------------------------------------ESRDEH----LGDCDIIVTTSEKADSLIRN-------RASWI 136 (202)
T ss_dssp --------------------------------------BCCSSC----STTCSEEEEEHHHHHHHHHT-------TCSGG
T ss_pred --------------------------------------cccccc----ccccceeeeccHHHHHHHhc-------cchhh
Confidence 000000 13589999999999988762 34578
Q ss_pred CceeEEEEecchhhh-hcCchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCCHHHHHHHHHhh
Q 004428 481 SSIEVLIIDHADIIL-MQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPNPEINAFFNHHC 558 (754)
Q Consensus 481 SSIEiLVlDeAD~mL-mQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~peinsL~~~~~ 558 (754)
..+.++|+||||.+. .+.......++..+...++. .|.|++|||++. .+.+. +++
T Consensus 137 ~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~---------------------~~~l~lSATl~n-~~~~~-~~l 192 (202)
T d2p6ra3 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA---------------------LRVIGLSATAPN-VTEIA-EWL 192 (202)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT---------------------CEEEEEECCCTT-HHHHH-HHT
T ss_pred hhhhhccccHHHHhcccccchHHHHHHHHHHhcCCC---------------------CcEEEEcCCCCc-HHHHH-HHc
Confidence 999999999999987 34334455566655544432 689999999854 56654 444
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.67 E-value=1e-17 Score=157.04 Aligned_cols=101 Identities=9% Similarity=-0.046 Sum_probs=90.4
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEc
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
...+++||||+|...+.+|..+|++.|+.+.++|+.+++.+ |++|+.+||||||.++ ||+| ++|++||+|
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~~~~~vlvaTd~~~--~GiD-~~v~~Vi~~ 102 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPTNGDVVVVATDALM--TGFT-GDFDSVIDC 102 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTTSSCEEEEESSSSC--SSSC-CCBSEEEEC
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhhhhcceeehhHHHH--hccc-cccceEEEE
Confidence 35679999999999999999999999999999999999765 7899999999999999 9999 899999985
Q ss_pred ----cCCCCCCchhhhccccCCCCCceEEEEechhc
Q 004428 696 ----SLPERKEFYPEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 696 ----~lP~~pefY~erigrt~ra~~g~~~~L~sk~D 727 (754)
++|.+++.|.||+||+||...| +.+++++.|
T Consensus 103 ~~~~~~P~~~~~y~qr~GR~gRg~~G-~~~~i~~~e 137 (138)
T d1jr6a_ 103 NTSDGKPQDAVSRTQRRGRTGRGKPG-IYRFVAPGE 137 (138)
T ss_dssp SEETTEECCHHHHHHHHTTBCSSSCE-EEEECCSSC
T ss_pred EecCCCCCCHHHHHhHhccccCCCCc-EEEEEcCCC
Confidence 5799999999999999993356 466888765
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.7e-16 Score=154.53 Aligned_cols=194 Identities=13% Similarity=0.023 Sum_probs=131.7
Q ss_pred CcCCCCCCHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcC
Q 004428 231 LYSDYGLKPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTR 310 (754)
Q Consensus 231 ~f~~l~L~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr 310 (754)
....++|.+.....|++++ |+.. ++|.|+++++.+++|+|++.+++|| +|||.+|.+|++++
T Consensus 3 ~~e~~~l~~~~~~~l~~~f---g~~~-~rp~Q~~ai~~~l~g~~vlv~apTG---------sGKT~~~~~~~~~~----- 64 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETF---GYQQ-FRPGQEEIIDTVLSGRDCLVVMPTG---------GGKSLCYQIPALLL----- 64 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTT---CCSS-CCTTHHHHHHHHHTTCCEEEECSCH---------HHHHHHHHHHHHHS-----
T ss_pred chhhCCCCHHHHHHHHHhc---CCCC-CCHHHHHHHHHHHcCCCEEEEcCCC---------CCCcchhhhhhhhc-----
Confidence 3566788888888888764 7766 6899999999999999999999998 99999999998642
Q ss_pred CccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCc
Q 004428 311 DLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKK 390 (754)
Q Consensus 311 ~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~ 390 (754)
..++++++||+.|+.|....+..+...... . ......
T Consensus 65 ---------------------------------~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~--------~--~~~~~~ 101 (206)
T d1oywa2 65 ---------------------------------NGLTVVVSPLISLMKDQVDQLQANGVAAAC--------L--NSTQTR 101 (206)
T ss_dssp ---------------------------------SSEEEEECSCHHHHHHHHHHHHHTTCCEEE--------E--CTTSCH
T ss_pred ---------------------------------cCceEEeccchhhhhhHHHHHHhhcccccc--------c--cccccc
Confidence 135899999999999999999887533210 0 000000
Q ss_pred cccCcccchhhhcccccccCCCCCCCCCCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhh
Q 004428 391 EEEDKDDDDASQNIRGTRKSNSQKSKPSDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAE 470 (754)
Q Consensus 391 ~~~~~~~~~~~~~~~n~~~~~~~~~KP~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e 470 (754)
. +......... -...+|++.||.++......
T Consensus 102 ~-------------------------------------------~~~~~~~~~~----~~~~~i~~~t~~~~~~~~~~-- 132 (206)
T d1oywa2 102 E-------------------------------------------QQLEVMTGCR----TGQIRLLYIAPERLMLDNFL-- 132 (206)
T ss_dssp H-------------------------------------------HHHHHHHHHH----HTCCSEEEECHHHHTSTTHH--
T ss_pred c-------------------------------------------cchhHHHHHh----cCCceEEEEechhhhchhhc--
Confidence 0 0000111111 14689999999998765431
Q ss_pred cccccCcccCCceeEEEEecchhhhhc---CchHHHHHHHHhccCCCCCCCCchhhhhhhhcccCCCccccEEEEcCCCC
Q 004428 471 ENKEQDVDYLSSIEVLIIDHADIILMQ---NWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDGYSRFYRQTVLLSYHPN 547 (754)
Q Consensus 471 ~~k~rd~dfLSSIEiLVlDeAD~mLmQ---Nw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~~ak~~RQTllFSAt~~ 547 (754)
...+.+.+.++|+||||.+... +|.....+...++..|. .|+|+||||++
T Consensus 133 -----~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~~ii~lSATl~ 185 (206)
T d1oywa2 133 -----EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT----------------------LPFMALTATAD 185 (206)
T ss_dssp -----HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTT----------------------SCEEEEESCCC
T ss_pred -----ccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhCCC----------------------CceEEEEeCCC
Confidence 2345788999999999988632 12211222222222232 79999999999
Q ss_pred HHHHH-HHHHh-hcCC
Q 004428 548 PEINA-FFNHH-CANY 561 (754)
Q Consensus 548 peins-L~~~~-~~N~ 561 (754)
+.+.. |.+.. +.||
T Consensus 186 ~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 186 DTTRQDIVRLLGLNDP 201 (206)
T ss_dssp HHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 98754 55553 5664
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.65 E-value=1.3e-16 Score=163.60 Aligned_cols=117 Identities=8% Similarity=-0.002 Sum_probs=104.4
Q ss_pred HhHHh-hhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCC--------CCHHHHHHHHHHHhcCCccEEEEccccc
Q 004428 609 VFPKI-KDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDY--------TEPSDISRARVWFFEGKRKMILYTERSH 679 (754)
Q Consensus 609 iLp~l-~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey--------~sq~~r~rar~~F~~G~~~ILL~TErah 679 (754)
+|..+ ......++||||++...+..+...|.+.++++..+||. +++.++.+++..|++|+++|||+|+++.
T Consensus 151 ~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~~~ 230 (286)
T d1wp9a2 151 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE 230 (286)
T ss_dssp HHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGG
T ss_pred HHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEcccee
Confidence 44443 33456799999999999999999999999999999875 5566899999999999999999999999
Q ss_pred ccCccccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEechhc
Q 004428 680 FYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLFSRFD 727 (754)
Q Consensus 680 ffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~sk~D 727 (754)
+|+||+++++|||||+|.+|.-|.||+||+||.+.|.++.|+++..
T Consensus 231 --~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~~ 276 (286)
T d1wp9a2 231 --EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGT 276 (286)
T ss_dssp --GGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTS
T ss_pred --ccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCCCCEEEEEEeCCC
Confidence 9999999999999999999999999999999998999999998754
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.54 E-value=2.2e-16 Score=159.52 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=91.9
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEc----ccccccCccccCC-CCeE
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYT----ERSHFYHRYKIRG-IQNL 692 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~T----ErahffRr~dIkg-V~~V 692 (754)
.+++||||++...+.+|..+|+.. +|+.+++.+|.+++..|++|++.||||| |+++ ||+||++ |++|
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~--rGlDip~~v~~V 96 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLV--RGLDLPERIRFA 96 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCSEEEEECC--------CCSCCTTTCCEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchhh--hccCccccccEE
Confidence 468999999999999999999863 8999999999999999999999999999 9999 9999985 9999
Q ss_pred EEccCCCCCCchhhhccccCCCC-CceEEEEechhcHHHHHHHh
Q 004428 693 IIYSLPERKEFYPEIVNMLEGSH-NMTCTVLFSRFDMLRLERIV 735 (754)
Q Consensus 693 IfY~lP~~pefY~erigrt~ra~-~g~~~~L~sk~D~~~LErIV 735 (754)
||||+|. |+|++||+||++ .|.++.+++..+...++++.
T Consensus 97 I~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l~ 136 (248)
T d1gkub2 97 VFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLL 136 (248)
T ss_dssp EEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTC
T ss_pred EEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHHH
Confidence 9999994 999999999998 57788888888877776554
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.40 E-value=3.3e-14 Score=147.76 Aligned_cols=104 Identities=12% Similarity=0.011 Sum_probs=91.2
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHH----------HHHHHHHhcCCccEEEEcccccccC---cc
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDI----------SRARVWFFEGKRKMILYTERSHFYH---RY 684 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r----------~rar~~F~~G~~~ILL~TErahffR---r~ 684 (754)
.+++||||+|+..+.+|.+.|++.|++...+|+.++|..| ..++..|+.|+.++||+|+.+. + ++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a--~g~~gi 113 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCV--TQTVDF 113 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEE--EEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehh--ccCCCC
Confidence 5789999999999999999999999999999999999987 4578899999999999999988 8 67
Q ss_pred ccCCCCeEEEccCCCCCCchhhhccccCCCCCceEEEEe
Q 004428 685 KIRGIQNLIIYSLPERKEFYPEIVNMLEGSHNMTCTVLF 723 (754)
Q Consensus 685 dIkgV~~VIfY~lP~~pefY~erigrt~ra~~g~~~~L~ 723 (754)
|++.|.+||+|++|.+++.|.||+|||||...|....++
T Consensus 114 Did~V~~VI~~d~P~SvesyIQRiGRTGRGr~G~~~~l~ 152 (299)
T d1a1va2 114 SLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVA 152 (299)
T ss_dssp CCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEEEEESC
T ss_pred CCCcceEEEeCCCCCCHHHHHhhccccCCCCCceEEEEe
Confidence 888888999999999999999999999994456655444
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=1.5e-13 Score=136.59 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=93.3
Q ss_pred CCCcEEEEecchh--------cHHHHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccc
Q 004428 617 IQGGIMLFLSSYF--------EFVRLRNFLKSQ---NASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYK 685 (754)
Q Consensus 617 ~~~~tLIFv~Sy~--------d~vrlrn~Lk~~---~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~d 685 (754)
..+++.+.||.-. ........|.+. ++++..+||-|++.++.+++..|++|+++|||||+++. +|+|
T Consensus 28 ~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE--~GID 105 (206)
T d1gm5a4 28 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE--VGID 105 (206)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC--SCSC
T ss_pred cCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhh--cccc
Confidence 3467777787532 233334444443 67889999999999999999999999999999999999 9999
Q ss_pred cCCCCeEEEccCCCCCCchhhh-ccccCCCC-CceEEEEechhcHHHHHHH
Q 004428 686 IRGIQNLIIYSLPERKEFYPEI-VNMLEGSH-NMTCTVLFSRFDMLRLERI 734 (754)
Q Consensus 686 IkgV~~VIfY~lP~~pefY~er-igrt~ra~-~g~~~~L~sk~D~~~LErI 734 (754)
|+++++||+|+.|....-|.|. .||+||++ .|.|+.|+++.+...++|+
T Consensus 106 ip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl 156 (206)
T d1gm5a4 106 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 156 (206)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred ccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhh
Confidence 9999999999999988888777 69999988 7999999987665555554
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.35 E-value=1.5e-11 Score=117.84 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=95.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|-+.|.+++..+. +++++.+++|| +|||.++++.+.+++.+.
T Consensus 10 pr~~Q~~~~~~~~-~~n~lv~~pTG---------sGKT~i~~~~~~~~~~~~---------------------------- 51 (200)
T d1wp9a1 10 PRIYQEVIYAKCK-ETNCLIVLPTG---------LGKTLIAMMIAEYRLTKY---------------------------- 51 (200)
T ss_dssp CCHHHHHHHHHGG-GSCEEEECCTT---------SCHHHHHHHHHHHHHHHS----------------------------
T ss_pred CCHHHHHHHHHHh-cCCeEEEeCCC---------CcHHHHHHHHHHHHHHhc----------------------------
Confidence 7899999999875 56899999998 899999999888877532
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCCcccccccccccccccccCCCccccCcccchhhhcccccccCCCCCCCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTPDAHKVNVEHIDRFCDEFGTKKEEEDKDDDDASQNIRGTRKSNSQKSKP 417 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~~~~~~v~nk~Rf~~efg~~~~~~~~~~~~~~~~~~n~~~~~~~~~KP 417 (754)
..++|||+|||.||.|.++.+.++..... .+.....++.
T Consensus 52 ------~~~il~i~P~~~L~~q~~~~~~~~~~~~~-------~~v~~~~~~~---------------------------- 90 (200)
T d1wp9a1 52 ------GGKVLMLAPTKPLVLQHAESFRRLFNLPP-------EKIVALTGEK---------------------------- 90 (200)
T ss_dssp ------CSCEEEECSSHHHHHHHHHHHHHHBCSCG-------GGEEEECSCS----------------------------
T ss_pred ------CCcEEEEcCchHHHHHHHHHHHHhhcccc-------cceeeeeccc----------------------------
Confidence 12689999999999999999999865432 1111111110
Q ss_pred CCceeeccCCCCCcccccccccHHHHhhhcccCCCCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhc
Q 004428 418 SDYQILFGGNNDDNFSIGIKFTRKSIKLYNDFYTSDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQ 497 (754)
Q Consensus 418 ~D~~~lF~GN~dD~FriGik~trk~lkLys~Fy~sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQ 497 (754)
. .....+.+ ..++|+|+||..+...+.. ....++.+.++|+||||.+...
T Consensus 91 -------------------~-~~~~~~~~---~~~~i~i~t~~~~~~~~~~-------~~~~~~~~~~vIiDE~H~~~~~ 140 (200)
T d1wp9a1 91 -------------------S-PEERSKAW---ARAKVIVATPQTIENDLLA-------GRISLEDVSLIVFDEAHRAVGN 140 (200)
T ss_dssp -------------------C-HHHHHHHH---HHCSEEEECHHHHHHHHHT-------TSCCTTSCSEEEEETGGGCSTT
T ss_pred -------------------c-hhHHHHhh---hcccccccccchhHHHHhh-------hhhhccccceEEEEehhhhhcc
Confidence 0 01111222 2468999999999987762 3456889999999999987643
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.27 E-value=1.3e-12 Score=127.00 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=86.4
Q ss_pred cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEc
Q 004428 616 SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIY 695 (754)
Q Consensus 616 ~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY 695 (754)
....++||||++......|.+.|. ...|||.+++.+|.+++..|++|+++|||+|+.+. .|+|++++++||+|
T Consensus 91 ~~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~--~Gidl~~~~~vi~~ 163 (200)
T d2fwra1 91 HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLD--EGIDVPDANVGVIM 163 (200)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCC--SSSCSCCBSEEEEE
T ss_pred CCCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhh--cccCCCCCCEEEEe
Confidence 345799999999998888887764 45689999999999999999999999999999998 99999999999999
Q ss_pred cCCCCCCchhhhccccCCCCC
Q 004428 696 SLPERKEFYPEIVNMLEGSHN 716 (754)
Q Consensus 696 ~lP~~pefY~erigrt~ra~~ 716 (754)
++|.+|..|.+++||++|.+.
T Consensus 164 ~~~~s~~~~~Q~iGR~~R~~~ 184 (200)
T d2fwra1 164 SGSGSAREYIQRLGRILRPSK 184 (200)
T ss_dssp CCSSCCHHHHHHHHHSBCCCT
T ss_pred CCCCCHHHHHHHHHhcCCCCC
Confidence 999999999999999999874
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.25 E-value=2.9e-12 Score=126.06 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=97.4
Q ss_pred CCcEEEEecchhcHHHHHHHHHhCC------------------------------CceEeecCCCCHHHHHHHHHHHhcC
Q 004428 618 QGGIMLFLSSYFEFVRLRNFLKSQN------------------------------ASFCLLGDYTEPSDISRARVWFFEG 667 (754)
Q Consensus 618 ~~~tLIFv~Sy~d~vrlrn~Lk~~~------------------------------~~f~~Ihey~sq~~r~rar~~F~~G 667 (754)
.+++||||||..++..++..|.+.. .-++..|+.+++.+|......|++|
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g 119 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 119 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCC
Confidence 4689999999999988887776421 1156789999999999999999999
Q ss_pred CccEEEEcccccccCccccCCCCeEEE-------ccCCCCCCchhhhccccCCCC---CceEEEEechhcHH-HHHHH
Q 004428 668 KRKMILYTERSHFYHRYKIRGIQNLII-------YSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRFDML-RLERI 734 (754)
Q Consensus 668 ~~~ILL~TErahffRr~dIkgV~~VIf-------Y~lP~~pefY~erigrt~ra~---~g~~~~L~sk~D~~-~LErI 734 (754)
.++|||||+.++ +|++++.+..||. |+.|.++..|.||+||+||.+ .|.|+.|+.+.+.. .++++
T Consensus 120 ~i~vlvaT~~l~--~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~~~~k~~ 195 (201)
T d2p6ra4 120 NIKVVVATPTLA--AGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRY 195 (201)
T ss_dssp SCCEEEECSTTT--SSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTT
T ss_pred CceEEEechHHH--hhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChHHHHHHH
Confidence 999999999999 9999998888886 888999999999999999976 58888888777653 35543
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.78 E-value=3.4e-09 Score=110.19 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=80.2
Q ss_pred CCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEEcc
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLIIYS 696 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIfY~ 696 (754)
..+++||||||+.+..++++.|++.|..++.+|+-+...++. .|++|+.+|||+|+++. .|++| +|.+||..+
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~--~~~~~-~~~~vid~g 107 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAE--MGANL-CVERVLDCR 107 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTT--CCTTC-CCSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhh--hceec-CceEEEecC
Confidence 468999999999999999999999999999999999988865 47899999999999999 99999 799999999
Q ss_pred CCCCCCch-------------------hhhccccCCCC-CceEEEEec
Q 004428 697 LPERKEFY-------------------PEIVNMLEGSH-NMTCTVLFS 724 (754)
Q Consensus 697 lP~~pefY-------------------~erigrt~ra~-~g~~~~L~s 724 (754)
++..|..| ..|.||+||.. ...+.-+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 108 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 87666655 47778888865 234444554
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=3.1e-08 Score=98.11 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=102.5
Q ss_pred CCCcEEEEecchhcHHHHHHHHHh--CCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEEE
Q 004428 617 IQGGIMLFLSSYFEFVRLRNFLKS--QNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLII 694 (754)
Q Consensus 617 ~~~~tLIFv~Sy~d~vrlrn~Lk~--~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VIf 694 (754)
..+++-+.||.-.+...+...|++ -++.+..+||-|++.++.+++..|++|+++|||||-+.- .|+||++++.+|.
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIE--vGiDvpnA~~iiI 107 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE--TGIDIPTANTIII 107 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTG--GGSCCTTEEEEEE
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhh--hccCCCCCcEEEE
Confidence 468899999999999999999987 488999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCCCCchhhhc-cccCCCC-CceEEEEechhc------HHHHHHHhCch
Q 004428 695 YSLPERKEFYPEIV-NMLEGSH-NMTCTVLFSRFD------MLRLERIVGSA 738 (754)
Q Consensus 695 Y~lP~~pefY~eri-grt~ra~-~g~~~~L~sk~D------~~~LErIVGt~ 738 (754)
++-+..----.|-+ ||+||++ .+.|+-++.... ..+|+.|..+.
T Consensus 108 ~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~~~~~~~a~~RL~~l~~~~ 159 (211)
T d2eyqa5 108 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 159 (211)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTTCC
T ss_pred ecchhccccccccccceeeecCccceEEEEecCCcCCCchHHHHHHHHHhcc
Confidence 98888666666665 9999987 688888774321 35666665554
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.75 E-value=1.8e-08 Score=88.93 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=44.7
Q ss_pred hhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccccCCCCCceE
Q 004428 268 LCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKV 347 (754)
Q Consensus 268 ~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkV 347 (754)
++..+++++.++.|| +|||..++..++.+..+. +.++
T Consensus 3 ~l~~~~~~il~~~tG---------sGKT~~~~~~~~~~~~~~----------------------------------~~~v 39 (140)
T d1yksa1 3 MLKKGMTTVLDFHPG---------AGKTRRFLPQILAECARR----------------------------------RLRT 39 (140)
T ss_dssp TTSTTCEEEECCCTT---------SSTTTTHHHHHHHHHHHT----------------------------------TCCE
T ss_pred HHHcCCcEEEEcCCC---------CChhHHHHHHHHHHhhhc----------------------------------Ccee
Confidence 456799999999998 899988877777776432 3579
Q ss_pred EEEccchhHHHHHHHHHH
Q 004428 348 LILLPLKSIALNVVKRLI 365 (754)
Q Consensus 348 LIL~PTRelA~qIv~~l~ 365 (754)
||++|+|+++.|..+.+.
T Consensus 40 li~~p~~~l~~q~~~~~~ 57 (140)
T d1yksa1 40 LVLAPTRVVLSEMKEAFH 57 (140)
T ss_dssp EEEESSHHHHHHHHHHTT
T ss_pred eeeecchhHHHHHHHHhh
Confidence 999999999999987664
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.75 E-value=5.4e-08 Score=96.77 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=89.5
Q ss_pred HHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEc-cc
Q 004428 601 RLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQ-NASFCLLGDYTEPSDISRARVWFFEGK-RKMILYT-ER 677 (754)
Q Consensus 601 Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~-~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~T-Er 677 (754)
|+..+.. ++..+.. ...++||||........|..+|.+. ++++..|||.+++.+|.+++..|.++. .++||+| ..
T Consensus 70 K~~~l~~-~l~~~~~-~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~ 147 (244)
T d1z5za1 70 KMIRTME-IIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 147 (244)
T ss_dssp HHHHHHH-HHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred HHHHHHH-HHHhhcc-cccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccc
Confidence 5554443 4444433 3468999999998888899999765 899999999999999999999999875 6777665 66
Q ss_pred ccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEEEechh
Q 004428 678 SHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 678 ahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
.. .|+++..+++||||++|-+|..+..++||+-|-| ...++-|++..
T Consensus 148 ~g--~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 148 GG--FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 197 (244)
T ss_dssp TC--CCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred cc--cccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCC
Confidence 66 9999999999999999999999999999988766 35566677654
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.71 E-value=4e-08 Score=103.67 Aligned_cols=123 Identities=7% Similarity=0.043 Sum_probs=101.9
Q ss_pred HHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCcc---EEEEccc
Q 004428 601 RLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRK---MILYTER 677 (754)
Q Consensus 601 Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~---ILL~TEr 677 (754)
++. .+..+|..+......++|||+........|..+|...+++++.|+|.++..+|.++...|.++... +|+.|..
T Consensus 102 Kl~-~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~a 180 (346)
T d1z3ix1 102 KML-VLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKA 180 (346)
T ss_dssp HHH-HHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGG
T ss_pred HHH-HHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchh
Confidence 444 233466655545567999999988888899999999999999999999999999999999988653 6777787
Q ss_pred ccccCccccCCCCeEEEccCCCCCCchhhhccccCCCC---CceEEEEechh
Q 004428 678 SHFYHRYKIRGIQNLIIYSLPERKEFYPEIVNMLEGSH---NMTCTVLFSRF 726 (754)
Q Consensus 678 ahffRr~dIkgV~~VIfY~lP~~pefY~erigrt~ra~---~g~~~~L~sk~ 726 (754)
.. .|+++.++.+||+|++|-+|..+...+||+-|-| ...+.-|+++.
T Consensus 181 gg--~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 181 GG--CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp SC--TTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred hh--hccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 77 9999999999999999999999999999998877 23445566654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.47 E-value=4.1e-07 Score=81.72 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=41.3
Q ss_pred CCEEEeCchhHHHHHhhhhcccccCcccCCceeEEEEecchhhhhcCchHHHHHHHHhccCCCCCCCCchhhhhhhhccc
Q 004428 452 SDMIVASPINLHQKMTKAEENKEQDVDYLSSIEVLIIDHADIILMQNWSWLIEVVEQLNRIPSKQHGTDVMRIRQWYLDG 531 (754)
Q Consensus 452 sDIIVASPlgLr~lI~~~e~~k~rd~dfLSSIEiLVlDeAD~mLmQNw~hv~~Il~~Ln~~Pk~~h~~DfsRvR~w~L~~ 531 (754)
..++++++..+.... ..+|+.++++|+||||.+--....-+..+++.+..-|+
T Consensus 74 ~~~~~~~~~~~~~~~----------~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~----------------- 126 (136)
T d1a1va1 74 SPITYSTYGKFLADG----------GCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGA----------------- 126 (136)
T ss_dssp CSEEEEEHHHHHHTT----------GGGGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTC-----------------
T ss_pred cceEEEeeeeecccc----------chhhhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCC-----------------
Confidence 568888888765432 23588999999999998642222224455555543332
Q ss_pred CCCccccEEEEcCCC
Q 004428 532 YSRFYRQTVLLSYHP 546 (754)
Q Consensus 532 ~ak~~RQTllFSAt~ 546 (754)
++.|++|||.
T Consensus 127 -----~~~l~~TATP 136 (136)
T d1a1va1 127 -----RLVVLATATP 136 (136)
T ss_dssp -----SEEEEEESSC
T ss_pred -----CcEEEEeCCC
Confidence 5788889983
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.35 E-value=7.6e-07 Score=86.25 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=50.3
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
+-|-|++++..+.++.-.+..+.|| +|||...+ .++.++
T Consensus 71 Lr~yQ~eav~~~~~~~~~ll~~~tG---------~GKT~~a~-~~~~~~------------------------------- 109 (206)
T d2fz4a1 71 LRDYQEKALERWLVDKRGCIVLPTG---------SGKTHVAM-AAINEL------------------------------- 109 (206)
T ss_dssp CCHHHHHHHHHHTTTSEEEEEESSS---------TTHHHHHH-HHHHHS-------------------------------
T ss_pred cCHHHHHHHHHHHhCCCcEEEeCCC---------CCceehHH-hHHHHh-------------------------------
Confidence 4689999999998888888888898 89997543 343322
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLT 368 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~ 368 (754)
..++|||||++.|+.|+.+.+..+.
T Consensus 110 ------~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 110 ------STPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred ------cCceeEEEcccchHHHHHHHHHhhc
Confidence 1368999999999999999887664
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=98.25 E-value=6.8e-06 Score=83.68 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=53.2
Q ss_pred CCHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhcccccccccccccc
Q 004428 258 HSSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAF 337 (754)
Q Consensus 258 pTpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~ 337 (754)
|-+-|.+++..++..+-.+..+.|| +|||..-++ ++.++...
T Consensus 114 ~rdyQ~~av~~~l~~~~~il~~pTG---------sGKT~i~~~-i~~~~~~~---------------------------- 155 (282)
T d1rifa_ 114 PHWYQKDAVFEGLVNRRRILNLPTS---------AGRSLIQAL-LARYYLEN---------------------------- 155 (282)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCCTT---------SCHHHHHHH-HHHHHHHH----------------------------
T ss_pred cchHHHHHHHHHHhcCCceeEEEcc---------cCccHHHHH-HHHHhhhc----------------------------
Confidence 5689999999998888888889998 788865433 33444322
Q ss_pred ccCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 338 LDRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 338 RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
..-|+|||||+++|+.|..+.+.++..
T Consensus 156 -----~~~k~Liivp~~~Lv~Q~~~~f~~~~~ 182 (282)
T d1rifa_ 156 -----YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp -----CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred -----ccceEEEEEcCchhHHHHHHHHHHhhc
Confidence 123799999999999999999998854
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=3.5e-05 Score=73.75 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhHHhhhcCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEEccc
Q 004428 599 DARLEYFTKKVFPKIKDSIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILYTER 677 (754)
Q Consensus 599 d~Rf~yF~~~iLp~l~~~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~TEr 677 (754)
.++++..+..+.. + .....++||++.|-.....|.++|++.+++...++.... ++...+-. ..|. -.|.|||..
T Consensus 17 ~eK~~AIi~eV~~-~-~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~--~~Ea~II~-~Ag~~g~VtIATNm 91 (175)
T d1tf5a4 17 EGKFKAVAEDVAQ-R-YMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH--EREAQIIE-EAGQKGAVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHH-H-HHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH--HHHHHHHT-TTTSTTCEEEEETT
T ss_pred HHHHHHHHHHHHH-H-HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH--HHHHHHHH-hccCCCceeehhhH
Confidence 4566644433321 1 124578999999999999999999999999999997543 33333333 3343 479999999
Q ss_pred ccccCccccC--------CCCeEEEccCCCCCCchhhhccccCCCCC-ceEEEEechhcHHHHHHHhCchHHHHhhh
Q 004428 678 SHFYHRYKIR--------GIQNLIIYSLPERKEFYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSAHAKKMVK 745 (754)
Q Consensus 678 ahffRr~dIk--------gV~~VIfY~lP~~pefY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ra~~m~~ 745 (754)
|. ||-||+ |-=|||--.+|++.-....+.||+||-|+ |++.-++|-.| .|-++.|.++..+|+.
T Consensus 92 AG--RGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD--~l~~~f~~~~~~~~~~ 164 (175)
T d1tf5a4 92 AG--RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED--ELMRRFGAERTMAMLD 164 (175)
T ss_dssp SS--TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS--SGGGSSHHHHHHHHHH
T ss_pred HH--cCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH--HHHHHHhHHHHHHHHH
Confidence 99 999997 56689999999999999999999999884 66766667666 2344677778877775
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.69 E-value=0.00066 Score=68.49 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHhhhhh------CCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCc
Q 004428 239 PKLYKHWLDIYNKSGGNDFHSSKQRSFFSLCN------SYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDL 312 (754)
Q Consensus 239 ~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i~------~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~ 312 (754)
..+.+.+.+. ..|. .|+-|+.++.-|. ..-.-|.++-+| +|||.+|++-++.-+..
T Consensus 70 ~~l~~~f~~~---LPFe--LT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvG---------SGKT~Va~~a~~~~~~~---- 131 (264)
T d1gm5a3 70 GKLAEEFIKS---LPFK--LTNAQKRAHQEIRNDMISEKPMNRLLQGDVG---------SGKTVVAQLAILDNYEA---- 131 (264)
T ss_dssp THHHHHHHHH---SSSC--CCHHHHHHHHHHHHHHHSSSCCCCEEECCSS---------SSHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHhh---cccc--CCchHHHHHHHHHHHhhccCcceeeeecccc---------ccccHHHHHHHHHHHhc----
Confidence 4555555543 2553 5999999888873 233667778887 89999999888765532
Q ss_pred cccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 313 VTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 313 V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
| =+|+||+||--||.|..+.+.++.+
T Consensus 132 ----------------------------g---~q~~~m~Pt~~La~Qh~~~~~~~f~ 157 (264)
T d1gm5a3 132 ----------------------------G---FQTAFMVPTSILAIQHYRRTVESFS 157 (264)
T ss_dssp ----------------------------T---SCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred ----------------------------c---cceeEEeehHhhhHHHHHHHHHhhh
Confidence 2 2699999999999999999998764
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.0015 Score=64.60 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCHHHHHHhhhh----hCC--ccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCC
Q 004428 238 KPKLYKHWLDIYNKSGGNDFHSSKQRSFFSLC----NSY--RDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRD 311 (754)
Q Consensus 238 ~~~L~~~~~~~~~~~g~~~~pTpiQ~~~ip~i----~~y--~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~ 311 (754)
...+.+.+.+. ..+. .|+-|+.++.-+ .+. -+.|.++.|| +|||.+|+.-++.-+.
T Consensus 41 ~~~~~~~~~~~---lP~~--lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvG---------sGKT~V~~~a~~~~~~---- 102 (233)
T d2eyqa3 41 DREQYQLFCDS---FPFE--TTPDQAQAINAVLSDMCQPLAMDRLVCGDVG---------FGKTEVAMRAAFLAVD---- 102 (233)
T ss_dssp CHHHHHHHHHT---CCSC--CCHHHHHHHHHHHHHHHSSSCCEEEEECCCC---------TTTHHHHHHHHHHHHT----
T ss_pred CHHHHHhhhhc---cccc--cchhHHHHHHHHHHHHhccCccCeEEEcCCC---------CCcHHHHHHHHHHHHH----
Confidence 34555555442 2342 588898877665 333 3889999998 8999999877766552
Q ss_pred ccccchhhhhhhccccccccccccccccCCCCCceEEEEccchhHHHHHHHHHHHhCCc
Q 004428 312 LVTKNDTKVAKNKVSAKEGILIGDAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 312 ~V~knn~kl~~~~~~~~~~~~~~~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
+| -+|++|+||--||.|..+.+.++.+.
T Consensus 103 ----------------------------~g---~qv~~l~Pt~~La~Q~~~~~~~~~~~ 130 (233)
T d2eyqa3 103 ----------------------------NH---KQVAVLVPTTLLAQQHYDNFRDRFAN 130 (233)
T ss_dssp ----------------------------TT---CEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred ----------------------------cC---CceEEEccHHHhHHHHHHHHHHHHhh
Confidence 23 37999999999999999999987654
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=95.25 E-value=0.1 Score=51.67 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.7
Q ss_pred ceEEEEccchhHHHHHHHHHHHhCCc
Q 004428 345 PKVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 345 PkVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
.++||+||. .+..|..++|.+..+.
T Consensus 115 ~~~LIV~P~-sl~~qW~~Ei~k~~~~ 139 (298)
T d1z3ix2 115 DKVIVVSPS-SLVRNWYNEVGKWLGG 139 (298)
T ss_dssp SCEEEEECH-HHHHHHHHHHHHHHGG
T ss_pred CcEEEEccc-hhhHHHHHHHHhhcCC
Confidence 369999997 4899999999987653
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.47 E-value=0.38 Score=46.45 Aligned_cols=138 Identities=10% Similarity=0.027 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHhHHhhh--cCCCcEEEEecchhcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ccEEEE
Q 004428 598 DDARLEYFTKKVFPKIKD--SIQGGIMLFLSSYFEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGK-RKMILY 674 (754)
Q Consensus 598 ~d~Rf~yF~~~iLp~l~~--~~~~~tLIFv~Sy~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~-~~ILL~ 674 (754)
.++|++ .|+..+.. ....++||.+.|-..-..|...|++.+++...|+.- +.++...+=. ..|+ -.|.||
T Consensus 16 ~~~K~~----Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK--~herEAeIIA-qAG~~GaVTIA 88 (219)
T d1nkta4 16 EEAKYI----AVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK--YHEQEATIIA-VAGRRGGVTVA 88 (219)
T ss_dssp HHHHHH----HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS--CHHHHHHHHH-TTTSTTCEEEE
T ss_pred HHHHHH----HHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchh--hHHHHHHHHH-hcccCCcEEee
Confidence 356776 44444433 356789999999999999999999999999999984 3344333222 4565 489999
Q ss_pred cccccccCccccCC----------------------------------------------------CCeEEEccCCCCCC
Q 004428 675 TERSHFYHRYKIRG----------------------------------------------------IQNLIIYSLPERKE 702 (754)
Q Consensus 675 TErahffRr~dIkg----------------------------------------------------V~~VIfY~lP~~pe 702 (754)
|-.|. ||-||.= ==|||--.--++--
T Consensus 89 TNMAG--RGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrR 166 (219)
T d1nkta4 89 TNMAG--RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRR 166 (219)
T ss_dssp ETTCS--TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHH
T ss_pred ccccC--CCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccc
Confidence 99999 9999942 22444443333221
Q ss_pred chhhhccccCCCCC-ceEEEEechhcHHHHHHHhCchHHHHhhhc
Q 004428 703 FYPEIVNMLEGSHN-MTCTVLFSRFDMLRLERIVGSAHAKKMVKS 746 (754)
Q Consensus 703 fY~erigrt~ra~~-g~~~~L~sk~D~~~LErIVGt~ra~~m~~s 746 (754)
.=..+-||.||-|+ |++.-+.|-.|- |=|+.|..+...|+..
T Consensus 167 IDnQLRGRsGRQGDPGsSrFflSLeDd--Lmr~F~~~~i~~lm~~ 209 (219)
T d1nkta4 167 IDNQLRGRSGRQGDPGESRFYLSLGDE--LMRRFNGAALETLLTR 209 (219)
T ss_dssp HHHHHHHTSSGGGCCEEEEEEEETTSH--HHHHTTHHHHHHHHHH
T ss_pred ccccccccccccCCCccceeEEeccHH--HHHHHChHHHHHHHHH
Confidence 11222255566554 667766676663 4568899999998863
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| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.26 E-value=0.087 Score=52.52 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=67.6
Q ss_pred CCcEEEEecch----hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeEE
Q 004428 618 QGGIMLFLSSY----FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNLI 693 (754)
Q Consensus 618 ~~~tLIFv~Sy----~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~VI 693 (754)
..++++-+|+- ..|.+++++|...++..+.+|+.++.++|........+|+++|+|-|= +.+|..+.++++..||
T Consensus 132 g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGTh-sl~~~~~~f~~Lglvi 210 (264)
T d1gm5a3 132 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH-ALIQEDVHFKNLGLVI 210 (264)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT-THHHHCCCCSCCCEEE
T ss_pred ccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeeh-HHhcCCCCccccceee
Confidence 46899999965 677888888888899999999999999999999999999999999985 5578888888998888
Q ss_pred E
Q 004428 694 I 694 (754)
Q Consensus 694 f 694 (754)
.
T Consensus 211 i 211 (264)
T d1gm5a3 211 I 211 (264)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.11 E-value=0.14 Score=49.50 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=49.5
Q ss_pred CHHHHHHhhhhhCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccccccc
Q 004428 259 SSKQRSFFSLCNSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIGDAFL 338 (754)
Q Consensus 259 TpiQ~~~ip~i~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~~~~R 338 (754)
+|-|++++... ..-++..+.=| ||||.+ +++.+.++++.
T Consensus 3 ~~eQ~~av~~~--~~~~lI~g~aG---------TGKTt~-l~~rv~~ll~~----------------------------- 41 (306)
T d1uaaa1 3 NPGQQQAVEFV--TGPCLVLAGAG---------SGKTRV-ITNKIAHLIRG----------------------------- 41 (306)
T ss_dssp CHHHHHHHHCC--SSEEEECCCTT---------SCHHHH-HHHHHHHHHHH-----------------------------
T ss_pred CHHHHHHHhCC--CCCEEEEeeCC---------ccHHHH-HHHHHHHHHHh-----------------------------
Confidence 68999998642 23366655433 899987 56777777643
Q ss_pred cCCCCCceEEEEccchhHHHHHHHHHHHhCC
Q 004428 339 DRGFTRPKVLILLPLKSIALNVVKRLIRLTP 369 (754)
Q Consensus 339 DQGftRPkVLIL~PTRelA~qIv~~l~~L~~ 369 (754)
.|...-+||||++||.+|..|.+.+.++.+
T Consensus 42 -~~~~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 42 -CGYQARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp -HCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred -cCCChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 112234799999999999999999988764
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| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.83 E-value=0.42 Score=45.06 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=47.9
Q ss_pred CHHHHHHhhhh----hCCccEEEecCCCCccCCCCCCchhHHHHHHHHHHHHhhcCCccccchhhhhhhccccccccccc
Q 004428 259 SSKQRSFFSLC----NSYRDILHSNKKPFYLKGQEEDSNIMETYLMHSLNHIFRTRDLVTKNDTKVAKNKVSAKEGILIG 334 (754)
Q Consensus 259 TpiQ~~~ip~i----~~y~Dvl~~a~Tg~~~~g~~~~tgkt~ay~Lh~LNHv~ktr~~V~knn~kl~~~~~~~~~~~~~~ 334 (754)
-|-|.+++.-| -.+..++.+...| .|||.. ++-++.|+.+..
T Consensus 14 ~~yQ~~~v~~~~~~~~~~~g~iLaDe~G---------lGKT~~-~i~~~~~~~~~~------------------------ 59 (230)
T d1z63a1 14 RPYQIKGFSWMRFMNKLGFGICLADDMG---------LGKTLQ-TIAVFSDAKKEN------------------------ 59 (230)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEECCCTT---------SCHHHH-HHHHHHHHHHTT------------------------
T ss_pred hHHHHHHHHHHHHhhhcCCCEEEEeCCC---------CChHHH-HHHhhhhhhhcc------------------------
Confidence 47888887644 3455567766666 788876 455666765431
Q ss_pred cccccCCCCCceEEEEccchhHHHHHHHHHHHhCCc
Q 004428 335 DAFLDRGFTRPKVLILLPLKSIALNVVKRLIRLTPD 370 (754)
Q Consensus 335 ~~~RDQGftRPkVLIL~PTRelA~qIv~~l~~L~~~ 370 (754)
...++||+|| ..+..|..+++.+....
T Consensus 60 --------~~~~~LIv~p-~~l~~~W~~e~~~~~~~ 86 (230)
T d1z63a1 60 --------ELTPSLVICP-LSVLKNWEEELSKFAPH 86 (230)
T ss_dssp --------CCSSEEEEEC-STTHHHHHHHHHHHCTT
T ss_pred --------cccccceecc-hhhhhHHHHHHHhhccc
Confidence 1236899999 78889999999988654
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| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=88.35 E-value=0.43 Score=46.46 Aligned_cols=77 Identities=10% Similarity=0.208 Sum_probs=64.0
Q ss_pred CCCcEEEEecch----hcHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCccccCCCCeE
Q 004428 617 IQGGIMLFLSSY----FEFVRLRNFLKSQNASFCLLGDYTEPSDISRARVWFFEGKRKMILYTERSHFYHRYKIRGIQNL 692 (754)
Q Consensus 617 ~~~~tLIFv~Sy----~d~vrlrn~Lk~~~~~f~~Ihey~sq~~r~rar~~F~~G~~~ILL~TErahffRr~dIkgV~~V 692 (754)
...+++|-+|+- ..|.+++++|..-++.+..+|+..+.+++...+..+.+|+++|+|-|=- .+|..+.+++...|
T Consensus 103 ~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths-~l~~~~~f~~LgLi 181 (233)
T d2eyqa3 103 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK-LLQSDVKFKDLGLL 181 (233)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH-HHHSCCCCSSEEEE
T ss_pred cCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehh-hhccCCccccccce
Confidence 457899999976 4566666666667899999999999999999999999999999999854 46677788888777
Q ss_pred EE
Q 004428 693 II 694 (754)
Q Consensus 693 If 694 (754)
|.
T Consensus 182 Ii 183 (233)
T d2eyqa3 182 IV 183 (233)
T ss_dssp EE
T ss_pred ee
Confidence 74
|