Citrus Sinensis ID: 004448

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750---

MAARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHHFVFSIF

ccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccEEcccccHHHHHHHHHHHHHHccccccccccccccHHHHccHHHHHHHHHHcHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccccHHHHHccccc

ccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHHHHHcccccEcccHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccHHHHcHHHEHccccHHHHHHHHHHHHHccccccccEcccHccHHHHHHHHHHHHHHHccHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHccccccccccEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHcccc

MAARNLEKMASIDAQLRLLapakvseddklVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAeyegkrdsqKLEELGNvltsldpgdsivvTKSFSHMLNLANLAEEVQIAYRRRIKlkkgdfvdensatteSDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTqlyakditpddKQELDEALQREIQAAFrtdeirrspptpqdemragmsyFHETIWKGVPKFLRRVDTALKniginervpynapliqfsswmggdrdgnprvtsevTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWkqippnepyrvILGDVRDKLYNTRERARQLLANgisdipediaYTHVEQFLEPLELCYRSlcacgdrpiadgsLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELrgkrplfgsdlpkteeIADVLDTFHviselpadsfgAYIISMATAPSDVLAVELLQRecrvkqplrvvplFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMigysdsgkdaGRLSAAWQLYKTQEELVKVAKQYGVKLTmfhgrggtvgrgggpthlailsqppdtihgslrvTVQGEVIEQSFGEEHLCFRTLQRFSAAtlehgmhppvspkpeWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLvsispihhhfvfsif

MAARNLEKMASIDAQLRLlapakvseddKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAeyegkrdsqkLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIklkkgdfvdensattesdieeTLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTqlyakditpddKQELDEALQREIQaafrtdeirrspptpqdemrAGMSYFHETIWKGVPKFLRRVDTALKniginervpynAPLIQFSSwmggdrdgnprvTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEfwkqippnepyrvILGDVRDKLYNTRERARQLLangisdipeDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDirqeserhtdviDAITKhlgigsyrewsEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAAtlehgmhppvspkpEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHHFVFSIF

MAARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHgrggtvgrgggPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHHFVFSIF

***************LRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEY***********LGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGDFV*************TLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDI***************************************MSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGL******DAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHG*********EWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHHFVFSI*

*******************************EYDALLLDRFLDILQDLHGEDIRETVQECYEL*****************NVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRR*******************DIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLAN**SDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMH***S**PEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHHFVFSIF

********MASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHHFVFSIF

*********ASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKG********TTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHHFVFSIF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		753	2.2.26 [Sep-21-2011]
Q9FV65		967	Phosphoenolpyruvate carbo	N/A	no	0.982	0.765	0.896	0.0
P16097		960	Phosphoenolpyruvate carbo	N/A	no	0.972	0.762	0.904	0.0
Q5GM68		963	Phosphoenolpyruvate carbo	yes	no	0.980	0.766	0.894	0.0
Q02909		967	Phosphoenolpyruvate carbo	no	no	0.982	0.765	0.889	0.0
P51061		967	Phosphoenolpyruvate carbo	no	no	0.982	0.765	0.880	0.0
P29193		966	Phosphoenolpyruvate carbo	N/A	no	0.982	0.766	0.881	0.0
Q84VW9		968	Phosphoenolpyruvate carbo	no	no	0.982	0.764	0.886	0.0
Q9FV66		965	Phosphoenolpyruvate carbo	N/A	no	0.982	0.766	0.879	0.0
P27154		964	Phosphoenolpyruvate carbo	N/A	no	0.982	0.767	0.883	0.0
Q9MAH0		967	Phosphoenolpyruvate carbo	no	no	0.982	0.765	0.885	0.0

>sp\|Q9FV65\|CAPPC_FLATR Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1	Back alignment and function desciption

 Score = 1360 bits (3520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/741 (89%), Positives = 705/741 (95%), Gaps = 1/741 (0%)

Query: 1   MAARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQEC 60
           MA RNLEK+ASIDAQLRLL P KVSEDDKL+EYDALLLD+FLDILQDLHGE ++ETVQEC
Sbjct: 1   MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEGLKETVQEC 60

Query: 61  YELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIK 120
           YELSAEYEGK D +KLEELGNVLTSLDPGDSIV+ K+FSHMLNLANLAEEVQIAYRRRIK
Sbjct: 61  YELSAEYEGKHDPKKLEELGNVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIK 120

Query: 121 LKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180
           LKKGDF DE SATTESDIEET K+LV +LKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS
Sbjct: 121 LKKGDFADEASATTESDIEETFKKLVHKLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180

Query: 181 LLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGM 240
           LLQKHGRIR+CL QLYAKDITPDDKQELDEAL REIQAAFRTDEIRR+PPTPQDEMRAGM
Sbjct: 181 LLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGM 240

Query: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTR 300
           SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVT EVTR
Sbjct: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTR 300

Query: 301 DVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSS-KRDAKHYIEFWKQI 359
           DVCLLARMMAAN+YFSQIEDLMFE+SMWRC+DELR RA+ LHRSS KRD KHYIEFWKQ+
Sbjct: 301 DVCLLARMMAANMYFSQIEDLMFEMSMWRCSDELRVRAEELHRSSSKRDVKHYIEFWKQV 360

Query: 360 PPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCA 419
           PP EPYRVILGDVRDKLYNTRERAR LLA+ +SDIPE+  YT+VEQFLEPLELCYRSLCA
Sbjct: 361 PPTEPYRVILGDVRDKLYNTRERARHLLAHDVSDIPEESVYTNVEQFLEPLELCYRSLCA 420

Query: 420 CGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEK 479
           CGDR IADGSLLDFLRQVSTFGLSLVRLDIRQES+RHTDV+DAIT+HL IGSYREWSEEK
Sbjct: 421 CGDRVIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITQHLEIGSYREWSEEK 480

Query: 480 RQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLA 539
           RQEWLLSEL GKRPLFG DLPKTEEIADVLDTFHV++ELPAD FGAYIISMAT+PSDVLA
Sbjct: 481 RQEWLLSELSGKRPLFGPDLPKTEEIADVLDTFHVLAELPADCFGAYIISMATSPSDVLA 540

Query: 540 VELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599
           VELLQREC VKQPLRVVPLFEKLADLEAAPA+VARLFSI+WY+NRI GKQEVMIGYSDSG
Sbjct: 541 VELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIEWYKNRIDGKQEVMIGYSDSG 600

Query: 600 KDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIH 659
           KDAGRLSAAWQLYK QEEL+ VAK++GVKLTMFHGRGGTVGRGGGPTHLAILSQPP+TIH
Sbjct: 601 KDAGRLSAAWQLYKAQEELINVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIH 660

Query: 660 GSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIAT 719
           GSLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM+PP+SP+PEWRALMDEMAV AT
Sbjct: 661 GSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRALMDEMAVYAT 720

Query: 720 KEYRSIVFQEPRFVEYFRLVS 740
           ++YR IVF+EPRFVEYFRL +
Sbjct: 721 EQYREIVFKEPRFVEYFRLAT 741

Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
Flaveria trinervia (taxid: 4227)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1

>sp\|P16097\|CAPP2_MESCR Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthemum crystallinum GN=PPC2 PE=3 SV=1	Back alignment and function description

>sp\|Q5GM68\|CAPP2_ARATH Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis thaliana GN=PPC2 PE=1 SV=2	Back alignment and function description

>sp\|Q02909\|CAPP1_SOYBN Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Glycine max GN=PPC16 PE=2 SV=1	Back alignment and function description

>sp\|P51061\|CAPP2_SOYBN Phosphoenolpyruvate carboxylase OS=Glycine max GN=PPC1 PE=2 SV=1	Back alignment and function description

>sp\|P29193\|CAPP1_SACHY Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Saccharum hybrid PE=3 SV=1	Back alignment and function description

>sp\|Q84VW9\|CAPP3_ARATH Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana GN=PPC3 PE=2 SV=2	Back alignment and function description

>sp\|Q9FV66\|CAPPB_FLATR Phosphoenolpyruvate carboxylase 1 OS=Flaveria trinervia GN=PPCB PE=1 SV=1	Back alignment and function description

>sp\|P27154\|CAPP_TOBAC Phosphoenolpyruvate carboxylase OS=Nicotiana tabacum GN=PPC PE=2 SV=1	Back alignment and function description

>sp\|Q9MAH0\|CAPP1_ARATH Phosphoenolpyruvate carboxylase 1 OS=Arabidopsis thaliana GN=PPC1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		753
255553993		965	Phosphoenolpyruvate carboxylase, putativ	0.982	0.766	0.941	0.0
2266947		965	phosphoenolpyruvate carboxylase 1 [Gossy	0.982	0.766	0.933	0.0
149789414		965	phosphoenolpyruvate carboxylase [Ricinus	0.982	0.766	0.937	0.0
155967407		965	phosphoenolpyruvate carboxylase [Jatroph	0.982	0.766	0.929	0.0
225446609		965	PREDICTED: phosphoenolpyruvate carboxyla	0.982	0.766	0.924	0.0
302142900		930	unnamed protein product [Vitis vinifera]	0.982	0.795	0.920	0.0
225461660		963	PREDICTED: phosphoenolpyruvate carboxyla	0.982	0.768	0.920	0.0
302143423		944	unnamed protein product [Vitis vinifera]	0.982	0.783	0.924	0.0
166714353		968	phosphoenolpyruvate carboxylase [Arachis	0.982	0.764	0.911	0.0
259506726		967	phosphoenolpyruvate carboxylase [Citrus	0.981	0.764	0.910	0.0

>gi\|255553993\|ref\|XP_002518037.1\| Phosphoenolpyruvate carboxylase, putative [Ricinus communis] gi\|223543019\|gb\|EEF44555.1\| Phosphoenolpyruvate carboxylase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1419 bits (3673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/740 (94%), Positives = 720/740 (97%)

Query: 1   MAARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQEC 60
           MA RNLEKMASIDAQLRLLAP KVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQ+C
Sbjct: 1   MAGRNLEKMASIDAQLRLLAPRKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQDC 60

Query: 61  YELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIK 120
           YELSAEYEGK + QKL ELG VLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIK
Sbjct: 61  YELSAEYEGKHNPQKLAELGKVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIK 120

Query: 121 LKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180
           LKKGDF DENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLV TAHPTQSVRRS
Sbjct: 121 LKKGDFADENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVLTAHPTQSVRRS 180

Query: 181 LLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGM 240
           LLQKH RIR+CLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRR+PPTPQDEMRAGM
Sbjct: 181 LLQKHARIRDCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGM 240

Query: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTR 300
           SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVT EVTR
Sbjct: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTR 300

Query: 301 DVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIP 360
           DVCLLARMMAANLYFSQIEDLMFELSMWRCN+ELR RAD LHR+S++DAKHYIEFWKQIP
Sbjct: 301 DVCLLARMMAANLYFSQIEDLMFELSMWRCNEELRVRADELHRTSRKDAKHYIEFWKQIP 360

Query: 361 PNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCAC 420
           P+EPYRVILGDVRDKLYNTRER+RQLLANGISDIPE+  +T+VEQFLEPLELCYRSLCAC
Sbjct: 361 PSEPYRVILGDVRDKLYNTRERSRQLLANGISDIPEEATFTNVEQFLEPLELCYRSLCAC 420

Query: 421 GDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKR 480
           GDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDV+DAITKHLGIG YREWSEE R
Sbjct: 421 GDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVLDAITKHLGIGFYREWSEEHR 480

Query: 481 QEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAV 540
           QEWLL+ELRGKRPLFG DLPKT+EIADVLDTFHVI+ELPAD+FGAYIISMATAPSDVLAV
Sbjct: 481 QEWLLTELRGKRPLFGPDLPKTDEIADVLDTFHVIAELPADNFGAYIISMATAPSDVLAV 540

Query: 541 ELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK 600
           ELLQRECRVKQPLRVVPLFEKLADLEAAPA+VARLFSIDWYRNRI+GKQEVMIGYSDSGK
Sbjct: 541 ELLQRECRVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRNRINGKQEVMIGYSDSGK 600

Query: 601 DAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHG 660
           DAGRLSAAWQLYK QEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHG
Sbjct: 601 DAGRLSAAWQLYKAQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHG 660

Query: 661 SLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATK 720
           SLRVTVQGEVIEQSFGEEHLCFRTLQRF+AATLEHGMHPPVSPKPEWR L+DEMAVIATK
Sbjct: 661 SLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRTLLDEMAVIATK 720

Query: 721 EYRSIVFQEPRFVEYFRLVS 740
           EYRSIVFQEPRFVEYFRL +
Sbjct: 721 EYRSIVFQEPRFVEYFRLAT 740

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|2266947\|gb\|AAB80714.1\| phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|149789414\|gb\|ABR29878.1\| phosphoenolpyruvate carboxylase [Ricinus communis]	Back alignment and taxonomy information

>gi\|155967407\|gb\|ABU41519.1\| phosphoenolpyruvate carboxylase [Jatropha curcas]	Back alignment and taxonomy information

>gi\|225446609\|ref\|XP_002280569.1\| PREDICTED: phosphoenolpyruvate carboxylase, housekeeping isozyme isoform 1 [Vitis vinifera] gi\|147770696\|emb\|CAN77927.1\| hypothetical protein VITISV_018739 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302142900\|emb\|CBI20195.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225461660\|ref\|XP_002285441.1\| PREDICTED: phosphoenolpyruvate carboxylase, housekeeping isozyme isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302143423\|emb\|CBI21984.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|166714353\|gb\|ABY87944.1\| phosphoenolpyruvate carboxylase [Arachis hypogaea]	Back alignment and taxonomy information

>gi\|259506726\|gb\|ABK54024.2\| phosphoenolpyruvate carboxylase [Citrus sinensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		753
UNIPROTKB\|Q9FV65		967	PPCC "Phosphoenolpyruvate carb	0.982	0.765	0.881	0.0
TAIR\|locus:2041529		963	PPC2 "phosphoenolpyruvate carb	0.980	0.766	0.879	0.0
TAIR\|locus:2086315		968	PPC3 "phosphoenolpyruvate carb	0.982	0.764	0.872	0.0
TAIR\|locus:2009600		967	PPC1 "phosphoenolpyruvate carb	0.982	0.765	0.870	0.0
UNIPROTKB\|Q9FV66		965	PPCB "Phosphoenolpyruvate carb	0.982	0.766	0.864	0.0
UNIPROTKB\|P30694		966	PPCA "C4 phosphoenolpyruvate c	0.982	0.766	0.828	0.0
TAIR\|locus:2012448		1032	PPC4 "phosphoenolpyruvate carb	0.494	0.360	0.482	3.5e-139
DICTYBASE\|DDB_G0287723		931	DDB_G0287723 "Phosphoenolpyruv	0.930	0.752	0.377	5.4e-134
UNIPROTKB\|P00864		883	ppc "Ppc" [Escherichia coli K-	0.496	0.423	0.456	3e-127
TIGR_CMR\|SO_0274		881	SO_0274 "phosphoenolpyruvate c	0.498	0.425	0.453	6.3e-127

UNIPROTKB\|Q9FV65 PPCC "Phosphoenolpyruvate carboxylase 2" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

 Score = 3412 (1206.1 bits), Expect = 0., P = 0.
 Identities = 653/741 (88%), Positives = 694/741 (93%)

Query:     1 MAARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQEC 60
             MA RNLEK+ASIDAQLRLL P KVSEDDKL+EYDALLLD+FLDILQDLHGE ++ETVQEC
Sbjct:     1 MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEGLKETVQEC 60

Query:    61 YELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIK 120
             YELSAEYEGK D +KLEELGNVLTSLDPGDSIV+ K+FSHMLNLANLAEEVQIAYRRRIK
Sbjct:    61 YELSAEYEGKHDPKKLEELGNVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIK 120

Query:   121 LKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180
             LKKGDF DE SATTESDIEET K+LV +LKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS
Sbjct:   121 LKKGDFADEASATTESDIEETFKKLVHKLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180

Query:   181 LLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGM 240
             LLQKHGRIR+CL QLYAKDITPDDKQELDEAL REIQAAFRTDEIRR+PPTPQDEMRAGM
Sbjct:   181 LLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGM 240

Query:   241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTR 300
             SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVT EVTR
Sbjct:   241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTR 300

Query:   301 DVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSS-KRDAKHYIEFWKQI 359
             DVCLLARMMAAN+YFSQIEDLMFE+SMWRC+DELR RA+ LHRSS KRD KHYIEFWKQ+
Sbjct:   301 DVCLLARMMAANMYFSQIEDLMFEMSMWRCSDELRVRAEELHRSSSKRDVKHYIEFWKQV 360

Query:   360 PPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCA 419
             PP EPYRVILGDVRDKLYNTRERAR LLA+ +SDIPE+  YT+VEQFLEPLELCYRSLCA
Sbjct:   361 PPTEPYRVILGDVRDKLYNTRERARHLLAHDVSDIPEESVYTNVEQFLEPLELCYRSLCA 420

Query:   420 CGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEK 479
             CGDR IADGSLLDFLRQVSTFGLSLVRLDIRQES+RHTDV+DAIT+HL IGSYREWSEEK
Sbjct:   421 CGDRVIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITQHLEIGSYREWSEEK 480

Query:   480 RQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLA 539
             RQEWLLSEL GKRPLFG DLPKTEEIADVLDTFHV++ELPAD FGAYIISMAT+PSDVLA
Sbjct:   481 RQEWLLSELSGKRPLFGPDLPKTEEIADVLDTFHVLAELPADCFGAYIISMATSPSDVLA 540

Query:   540 VELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599
             VELLQREC VKQPLRVVPLFEKLADLEAAPA+VARLFSI+WY+NRI GKQEVMIGYSDSG
Sbjct:   541 VELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIEWYKNRIDGKQEVMIGYSDSG 600

Query:   600 KDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIH 659
             KDAGRLSAAWQLYK QEEL+ VAK++GVKLTMFH           PTHLAILSQPP+TIH
Sbjct:   601 KDAGRLSAAWQLYKAQEELINVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIH 660

Query:   660 GSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIAT 719
             GSLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM+PP+SP+PEWRALMDEMAV AT
Sbjct:   661 GSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRALMDEMAVYAT 720

Query:   720 KEYRSIVFQEPRFVEYFRLVS 740
             ++YR IVF+EPRFVEYFRL +
Sbjct:   721 EQYREIVFKEPRFVEYFRLAT 741

GO:0008964 "phosphoenolpyruvate carboxylase activity" evidence=IDA

GO:0015977 "carbon fixation" evidence=IDA

TAIR\|locus:2041529 PPC2 "phosphoenolpyruvate carboxylase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2086315 PPC3 "phosphoenolpyruvate carboxylase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2009600 PPC1 "phosphoenolpyruvate carboxylase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9FV66 PPCB "Phosphoenolpyruvate carboxylase 1" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

UNIPROTKB\|P30694 PPCA "C4 phosphoenolpyruvate carboxylase" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

TAIR\|locus:2012448 PPC4 "phosphoenolpyruvate carboxylase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287723 DDB_G0287723 "Phosphoenolpyruvate carboxylase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|P00864 ppc "Ppc" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0274 SO_0274 "phosphoenolpyruvate carboxylase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27154	CAPP_TOBAC	4, ., 1, ., 1, ., 3, 1	0.8837	0.9827	0.7676	N/A	no
P10490	CAPP1_MESCR	4, ., 1, ., 1, ., 3, 1	0.8313	0.9827	0.7660	N/A	no
Q9AU12	CAPP_PHAVU	4, ., 1, ., 1, ., 3, 1	0.8692	0.9827	0.7644	N/A	no
Q02735	CAPP_MEDSA	4, ., 1, ., 1, ., 3, 1	0.8635	0.9800	0.7639	N/A	no
Q5GM68	CAPP2_ARATH	4, ., 1, ., 1, ., 3, 1	0.8947	0.9800	0.7663	yes	no
P29193	CAPP1_SACHY	4, ., 1, ., 1, ., 3, 1	0.8812	0.9827	0.7660	N/A	no
P29195	CAPP1_SORBI	4, ., 1, ., 1, ., 3, 1	0.8878	0.9707	0.7614	N/A	no
P29194	CAPP2_SORBI	4, ., 1, ., 1, ., 3, 1	0.8816	0.9760	0.7656	N/A	no
P29196	CAPP_SOLTU	4, ., 1, ., 1, ., 3, 1	0.8893	0.9827	0.7668	N/A	no
P16097	CAPP2_MESCR	4, ., 1, ., 1, ., 3, 1	0.9045	0.9721	0.7625	N/A	no
Q9FV66	CAPPB_FLATR	4, ., 1, ., 1, ., 3, 1	0.8797	0.9827	0.7668	N/A	no
Q9FV65	CAPPC_FLATR	4, ., 1, ., 1, ., 3, 1	0.8960	0.9827	0.7652	N/A	no
Q01647	CAPP1_FLAPR	4, ., 1, ., 1, ., 3, 1	0.8731	0.9827	0.7652	N/A	no
P15804	CAPP3_SORBI	4, ., 1, ., 1, ., 3, 1	0.7806	0.9667	0.7583	N/A	no
P51062	CAPP_PEA	4, ., 1, ., 1, ., 3, 1	0.8648	0.9800	0.7631	N/A	no
P51063	CAPP_PICAB	4, ., 1, ., 1, ., 3, 1	0.8697	0.9787	0.7653	N/A	no
Q43299	CAPP_AMAHP	4, ., 1, ., 1, ., 3, 1	0.8414	0.9774	0.7634	N/A	no
P04711	CAPP1_MAIZE	4, ., 1, ., 1, ., 3, 1	0.8117	0.9707	0.7536	N/A	no
P30694	CAPPA_FLATR	4, ., 1, ., 1, ., 3, 1	0.8432	0.9827	0.7660	N/A	no
P51059	CAPP2_MAIZE	4, ., 1, ., 1, ., 3, 1	0.875	0.9774	0.7611	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1.31	0.991
3rd Layer	4.1.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GPEPC	RecName- Full=Phosphoenolpyruvate carboxylase; EC=4.1.1.31; (965 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019865001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (961 aa)	•	•	0.951
	GSVIVG00025495001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (475 aa)	•	•	0.935
	26N20_30	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa)	•	•	0.935
	GSVIVG00024850001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (491 aa)	•	•	0.934
	GSVIVG00002610001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (510 aa)	•	•	0.933
	GSVIVG00006511001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (622 aa)	•	•	0.932
	GSVIVG00006460001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (571 aa)	•	•	0.927
	GSVIVG00023818001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (569 aa)	•	•	0.925
	GSVIVG00020102001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (586 aa)	•	•	0.925
	GSVIVG00038611001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (573 aa)	•	•	0.925

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		753
pfam00311		794	pfam00311, PEPcase, Phosphoenolpyruvate carboxylas	0.0
PRK00009		911	PRK00009, PRK00009, phosphoenolpyruvate carboxylas	0.0
COG2352		910	COG2352, Ppc, Phosphoenolpyruvate carboxylase [Ene	0.0
PTZ00398		974	PTZ00398, PTZ00398, phosphoenolpyruvate carboxylas	0.0

>gnl\|CDD\|215852 pfam00311, PEPcase, Phosphoenolpyruvate carboxylase	Back alignment and domain information

 Score =  879 bits (2273), Expect = 0.0
 Identities = 295/602 (49%), Positives = 386/602 (64%), Gaps = 28/602 (4%)

Query: 162 NQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFR 221
              + LVFTAHPT+ VRR++L K  RI   L QL   D+TP ++QELDE L+ EI+  ++
Sbjct: 1   ELDIRLVFTAHPTEIVRRTILDKQRRIAELLAQLDDADLTPRERQELDEQLREEIRLLWQ 60

Query: 222 TDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFS 281
           TDE+R+  PT  DE+R G+SYF ET++  +P+  RR+D ALK      R+P     ++F 
Sbjct: 61  TDELRQFKPTVLDEVRNGLSYFEETLFDALPQLYRRLDRALKESFPGLRLPLPNF-LRFG 119

Query: 282 SWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRAR 337
           SW+GGDRDGNP VT+EVT +  LL R +A  LY   +E L FELSM       + EL A 
Sbjct: 120 SWIGGDRDGNPNVTAEVTWETLLLQRELALELYLKSVEALRFELSMSLRWSDVSPELLAS 179

Query: 338 ADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPED 397
            +   R  ++  + Y E   +    EPYR+ L  +R +L NTRER   LLA    ++P  
Sbjct: 180 LE---RDREQLPEVYEE-LAERYRQEPYRLKLAYIRARLENTRERLAALLAGR--ELPPG 233

Query: 398 IAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHT 457
            AYT  E+ LE LEL YRSL   G   +ADG LLD +RQV  FG  L  LDIRQES RH 
Sbjct: 234 EAYTSAEELLEDLELIYRSLRETGGGLLADGRLLDLIRQVEVFGFHLATLDIRQESTRHE 293

Query: 458 DVIDAITKHLGI-GSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVIS 516
           D +  IT++LG+ G Y E SEE+RQ WLL EL  +RPL   DLP +EE  +VLDTF VI+
Sbjct: 294 DALAEITRYLGLPGDYAELSEEERQAWLLRELETRRPLIPPDLPFSEETREVLDTFRVIA 353

Query: 517 ELPA----DSFGAYIISMATAPSDVLAVELLQRECRVKQP------LRVVPLFEKLADLE 566
            L      ++ G YIISMA   SDVL V LL +E  +  P      LRVVPLFE + DL 
Sbjct: 354 RLQQEFGPEAIGTYIISMAHTASDVLEVLLLAKEAGLLDPATGRSTLRVVPLFETIEDLR 413

Query: 567 AAPASVARLFSIDWYRNRISG---KQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAK 623
            AP  + +LFS+ WYR  ++G    QEVM+GYSDS KD G L++ W+LYK QE LVKVA+
Sbjct: 414 NAPEIMRQLFSLPWYRELLAGRGDLQEVMLGYSDSNKDGGFLTSNWELYKAQEALVKVAE 473

Query: 624 QYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFR 683
           +YGVKL +FHGRGG+VGRGGGP + AIL+QPP T++G +R+T QGEVI   +G   L  R
Sbjct: 474 KYGVKLRLFHGRGGSVGRGGGPAYEAILAQPPGTLNGRIRITEQGEVIASKYGLPELALR 533

Query: 684 TLQRFSAATLEHGMHPPVSPK-PEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSIS 742
            L+ ++AA LE  + PP  PK PEWR +M+E++  + K YR++V++ P FV+YFR    +
Sbjct: 534 NLELYTAAVLEASLLPPPPPKIPEWREIMEELSERSRKAYRALVYETPDFVDYFR--QAT 591

Query: 743 PI 744
           PI
Sbjct: 592 PI 593

Length = 794

>gnl\|CDD\|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|173589 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		753
COG2352		910	Ppc Phosphoenolpyruvate carboxylase [Energy produc	100.0
PRK00009		911	phosphoenolpyruvate carboxylase; Reviewed	100.0
PTZ00398		974	phosphoenolpyruvate carboxylase; Provisional	100.0
PF00311		794	PEPcase: Phosphoenolpyruvate carboxylase; InterPro	100.0
PRK13655		494	phosphoenolpyruvate carboxylase; Provisional	100.0
TIGR02751		506	PEPCase_arch phosphoenolpyruvate carboxylase, arch	100.0
PF14010		491	PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3	98.37
COG1892		488	Phosphoenolpyruvate carboxylase [Carbohydrate tran	96.73
PRK10558		256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	96.27
TIGR03239		249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	96.09
PF03328		221	HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family	96.06
TIGR01064		473	pyruv_kin pyruvate kinase. This enzyme is a homote	94.56
PRK08187		493	pyruvate kinase; Validated	91.5
PRK05826		465	pyruvate kinase; Provisional	91.17
PLN02623		581	pyruvate kinase	91.01
PRK09206		470	pyruvate kinase; Provisional	90.73
PTZ00300		454	pyruvate kinase; Provisional	90.25
TIGR01588		288	citE citrate lyase, beta subunit. This is a model	89.45
TIGR02311		249	HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	88.52
cd00288		480	Pyruvate_Kinase Pyruvate kinase (PK): Large allost	88.05
PRK06354		590	pyruvate kinase; Provisional	87.27
PRK06247		476	pyruvate kinase; Provisional	87.13
PRK10128		267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	82.0

>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=8e-198  Score=1661.16  Aligned_cols=698  Identities=41%  Similarity=0.662  Sum_probs=654.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHhHhhhcCCCchhHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q 004448           26 EDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLA  105 (753)
Q Consensus        26 ~~~~l~~~~~~L~~lL~evl~e~~G~~~~~~ve~ir~ls~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~~f~L~  105 (753)
                      ++..+++||++||++||++|+++.|+++|++||+||+++++.|.+ +.+++.+|.+.+.+|+.+++..++||||+|++|+
T Consensus         5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~r~~-~~~~~~~L~~~l~~Ls~~~~~~vaRaFs~f~~L~   83 (910)
T COG2352           5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKESRAG-DQADRQELEATLANLSNDEAIPVARAFSQFLLLA   83 (910)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHcCCCHhhhhHHHHHHHHHhhhh
Confidence            567899999999999999999999999999999999999988876 5567899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCCCCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhccCceeEeeccCCCccchhhHHHHH
Q 004448          106 NLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH  185 (753)
Q Consensus       106 NiAEe~~r~r~~r~~~~~~~~~~~~~~~~~~s~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~~~  185 (753)
                      ||||++|+.|+++.+...+.        ..+||..++++|+ +.|++++++.+.|+++.|+|||||||||++||||++++
T Consensus        84 NiaEd~~~~~r~~~~~~~~~--------~~~sL~~~~~~Lk-~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~  154 (910)
T COG2352          84 NIAEDYHRIRRRQIHEAAGD--------SDGSLAATLKKLK-EQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQ  154 (910)
T ss_pred             hHHHHhhhHhhhhhhhccCC--------CcchHHHHHHHHH-hcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHH
Confidence            99999999998775554443        2489999999998 89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 004448          186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNI  265 (753)
Q Consensus       186 ~~I~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~y~~~~l~~avP~l~~~l~~al~~~  265 (753)
                      ++|.++|.+++...+++. ++.++++|++.|..+|||+++|..||||.|||+||++||+++||++||++|++++.++.++
T Consensus       155 ~~I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~  233 (910)
T COG2352         155 REINRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQET  233 (910)
T ss_pred             HHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999987776666 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC----ccCCHHHHHhHhhh
Q 004448          266 GINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRARADGL  341 (753)
Q Consensus       266 ~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~----~~~s~~l~~~~~~~  341 (753)
                      ++ ...|..++|++|||||||||||||||||+||++++..+|++++++|+++|.+|+.+||+    ++||++|.++++.-
T Consensus       234 ~~-~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~~  312 (910)
T COG2352         234 FG-ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGES  312 (910)
T ss_pred             cc-cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhcC
Confidence            75 34566678999999999999999999999999999999999999999999999999999    68999999988753


Q ss_pred             hhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCHHHhhHHHHHHHHHHHhcC
Q 004448          342 HRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACG  421 (753)
Q Consensus       342 ~~~~~~~~~~~~~f~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~sL~~~~  421 (753)
                      .+    ...        .+.+||||++|..|++||.+|...+.....+.. ......+|.+++||++||..|++||.+||
T Consensus       313 ~d----~~~--------~r~~EPYR~al~~i~~rL~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G  379 (910)
T COG2352         313 QD----QSI--------RRADEPYRRALKYIRSRLMATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACG  379 (910)
T ss_pred             cc----ccc--------hhccccHHHHHHHHHHHHHHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            22    111        245899999999999999999987765544322 12234589999999999999999999999


Q ss_pred             CccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCC-CCCCCCHHHHHHHHHhhhcCCCCCCCCCCC
Q 004448          422 DRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIG-SYREWSEEKRQEWLLSELRGKRPLFGSDLP  500 (753)
Q Consensus       422 ~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~  500 (753)
                      ++.+|+|.|.+++++|++|||||++|||||||++|+.||+||++++|++ +|.+|||++|++||.+||.++|||+++..+
T Consensus       380 ~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~  459 (910)
T COG2352         380 MEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQ  459 (910)
T ss_pred             CceeccchHHHHHHHHHhcCceeeccccccccchHHHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999 899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCC----CCccCcEEecCCCCcccHHHHHHHHHHcCCC----CCCccccccCChHHHhchHHHH
Q 004448          501 KTEEIADVLDTFHVISELP----ADSFGAYIISMATAPSDVLAVELLQRECRVK----QPLRVVPLFEKLADLEAAPASV  572 (753)
Q Consensus       501 ~s~~~~~~l~~f~~i~~~~----~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~----~~l~VvPLFETi~DL~~a~~im  572 (753)
                      +|+.|+++|+||+++++++    +++|++||||||+++||||||++|+||+|+.    .+++|||||||||||+||+.||
T Consensus       460 ~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm  539 (910)
T COG2352         460 PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVM  539 (910)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHH
Confidence            9999999999999999776    4679999999999999999999999999997    7899999999999999999999


Q ss_pred             HHHhccHHHHHhhc---CceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhhh
Q 004448          573 ARLFSIDWYRNRIS---GKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLA  649 (753)
Q Consensus       573 ~~Ll~~p~yr~~l~---~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~~a  649 (753)
                      ++||++|+||..|+   |.||||||||||||||||++|||++|+||++|+++|+|+||+++|||||||||||||||+|.|
T Consensus       540 ~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGGGPa~~A  619 (910)
T COG2352         540 TQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGGGPAYAA  619 (910)
T ss_pred             HHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCCchHHHH
Confidence            99999999999995   489999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCC-CCCChHHHHHHHHHHHHHHHHHHhhhhc
Q 004448          650 ILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPP-VSPKPEWRALMDEMAVIATKEYRSIVFQ  728 (753)
Q Consensus       650 ilaqP~gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~-~~~~~~~~~~me~ls~~s~~~Yr~Lv~~  728 (753)
                      |+|||+|||+|+||+|||||||..|||+|++|.||||++++|+|++++.++ ++|+++|+++||+||+.||.+||.||++
T Consensus       620 ILsQP~gsv~g~iRiTEQGE~I~~Kyg~p~~A~~nLe~l~sAvLeAsllp~~~dp~~~~~~iMd~ls~~S~~~YR~lV~~  699 (910)
T COG2352         620 ILSQPPGSVKGRIRITEQGEMIAFKYGLPEVARRNLETLVSAVLEASLLPPKPDPKESWRAIMDELSDISCDAYRGLVRE  699 (910)
T ss_pred             HhcCCCcccCCceEeehhHHHHHHhhCChHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999876 6778889999999999999999999999


Q ss_pred             CCChhhhhhhcccccccchh
Q 004448          729 EPRFVEYFRLVSISPIHHHF  748 (753)
Q Consensus       729 ~p~F~~yF~~aTPi~~~~~~  748 (753)
                      +|+|++||+++|||.|++.+
T Consensus       700 ~pdFvdyF~~~TPi~EIs~L  719 (910)
T COG2352         700 NPDFVDYFRQATPIQEISKL  719 (910)
T ss_pred             CCcHHHHHHhcCcHHHHhcC
Confidence            99999999999999999875

>PRK00009 phosphoenolpyruvate carboxylase; Reviewed	Back alignment and domain information

>PTZ00398 phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []	Back alignment and domain information

>PRK13655 phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type	Back alignment and domain information

>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C	Back alignment and domain information

>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]	Back alignment and domain information

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	Back alignment and domain information

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase	Back alignment and domain information

>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4	Back alignment and domain information

>TIGR01064 pyruv_kin pyruvate kinase	Back alignment and domain information

>PRK08187 pyruvate kinase; Validated	Back alignment and domain information

>PRK05826 pyruvate kinase; Provisional	Back alignment and domain information

>PLN02623 pyruvate kinase	Back alignment and domain information

>PRK09206 pyruvate kinase; Provisional	Back alignment and domain information

>PTZ00300 pyruvate kinase; Provisional	Back alignment and domain information

>TIGR01588 citE citrate lyase, beta subunit	Back alignment and domain information

>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Back alignment and domain information

>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

>PRK06247 pyruvate kinase; Provisional	Back alignment and domain information

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		753
3zgb_A		972	Greater Efficiency Of Photosynthetic Carbon Fixatio		0.0
3zge_A		990	Greater Efficiency Of Photosynthetic Carbon Fixatio		0.0
1jqo_A		970	Crystal Structure Of C4-Form Phosphoenolpyruvate Ca		0.0
1qb4_A		883	Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruva		1e-137

>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 972

Back alignment and structure

Iteration: 1

Score = 1338 bits (3462), Expect = 0.0, Method: Compositional matrix adjust. Identities = 633/735 (86%), Positives = 687/735 (93%) Query: 6 LEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSA 65 LEK+ASIDAQLRLL P KVSEDDKL+EYDALLLD+FLDILQDLHGED++E VQECYELSA Sbjct: 12 LEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKEAVQECYELSA 71 Query: 66 EYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKKGD 125 EYEGK D +KLEELG+VLTSLDPGDSIV+ K+FSHMLNLANLAEEVQIAYRRRIKLK+GD Sbjct: 72 EYEGKHDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKRGD 131 Query: 126 FVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185 F DE +ATTESDIEET K+LV++L KSPEEVFDALKNQTVDLV TAHPTQSVRRSLLQKH Sbjct: 132 FADEANATTESDIEETFKKLVLKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKH 191 Query: 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHE 245 GRIRNCL QLYAKDITPDDKQELDEAL REIQAAFRTDEIRR+PPTPQDEMRAGMSYFHE Sbjct: 192 GRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHE 251 Query: 246 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLL 305 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVT EVTRDVCLL Sbjct: 252 TIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLL 311 Query: 306 ARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPY 365 ARMMA+N+YFSQIEDLMFE+SMWRCN ELR RA+ L+R+++RD KHYIEFWKQ+PP EPY Sbjct: 312 ARMMASNMYFSQIEDLMFEMSMWRCNSELRVRAEELYRTARRDVKHYIEFWKQVPPTEPY 371 Query: 366 RVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPI 425 RVILGDVRDKLYNTRER+R LLA+GISDIPE+ YT+VEQFLEPLELCYRSLC CGDR I Sbjct: 372 RVILGDVRDKLYNTRERSRHLLAHGISDIPEEAVYTNVEQFLEPLELCYRSLCDCGDRVI 431 Query: 426 ADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLL 485 ADGSLLDFLRQVSTFGLSLV+LDIRQES+RHTDV+DAIT+HL IGSYREWSEEKRQEWLL Sbjct: 432 ADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLL 491 Query: 486 SELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQR 545 +EL GKRPLFGSDLPKTEE+ DVLDTF+V++ELP+D FGAYIISMAT+PSDVLAVELLQR Sbjct: 492 AELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQR 551 Query: 546 ECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 EC VK PLRVVPLFEKLADLEAAPA++ARLFSIDWYRNRI GKQEVMIGYSDSGKDAGR Sbjct: 552 ECHVKHPLRVVPLFEKLADLEAAPAAMARLFSIDWYRNRIDGKQEVMIGYSDSGKDAGRF 611 Query: 606 SAAWQLYKTQEELVKVAKQYGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSLRVT 665 SAAWQLYK QEE++KVAK++GVKL +FH PTHLAILSQPPDTIHGSLRVT Sbjct: 612 SAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVT 671 Query: 666 VQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSI 725 VQGEVIEQSFGEEHLCFRTLQRF AATLEHGM+PP+SP+PEWR LMD+MAV+AT+EYRSI Sbjct: 672 VQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATEEYRSI 731 Query: 726 VFQEPRFVEYFRLVS 740 VF+EPRFVEYFRL + Sbjct: 732 VFKEPRFVEYFRLAT 746

PyMOL of 3zgb

>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 990

Back alignment and structure

>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase From Maize Length = 970

Back alignment and structure

>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate Carboxylase Length = 883

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		753
1jqo_A		970	Phosphoenolpyruvate carboxylase; beta barrel, carb	0.0
1jqn_A		883	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	0.0
3odm_A		560	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	3e-48
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Length = 970	Back alignment and structure

 Score =  992 bits (2565), Expect = 0.0
 Identities = 597/745 (80%), Positives = 657/745 (88%), Gaps = 4/745 (0%)

Query: 2   AARNLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECY 61
           A    EK  SIDAQLR L P KVSEDDKL+EYDALL+DRFL+ILQDLHG  +RE VQECY
Sbjct: 6   APGPGEKHHSIDAQLRQLVPGKVSEDDKLIEYDALLVDRFLNILQDLHGPSLREFVQECY 65

Query: 62  ELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRR-IK 120
           E+SA+YEGK D+ KL ELG  LT L P D+I+V  S  HMLNLANLAEEVQIA+RRR  K
Sbjct: 66  EVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSK 125

Query: 121 LKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRS 180
           LKKG F DE SATTESDIEETLKRLV ++ KSPEEVF+ALKNQTVDLVFTAHPTQS RRS
Sbjct: 126 LKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRS 185

Query: 181 LLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGM 240
           LLQK+ RIRNCLTQL AKDIT DDKQELDEALQREIQAAFRTDEIRR+ PTPQ EMR GM
Sbjct: 186 LLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGM 245

Query: 241 SYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTR 300
           SY HET+WKGVPKFLRRVDTALKNIGINER+PYN  LI+FSSWMGGDRDGNPRVT EVTR
Sbjct: 246 SYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTR 305

Query: 301 DVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRD-AKHYIEFWKQI 359
           DVCLLARMMAANLY  QIE+LMFELSMWRCNDELR RA+ LH SS     K+YIEFWKQI
Sbjct: 306 DVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQI 365

Query: 360 PPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCA 419
           PPNEPYRVILG VRDKLYNTRERAR LLA+G+S+I  + ++T +E+FLEPLELCY+SLC 
Sbjct: 366 PPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCD 425

Query: 420 CGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEK 479
           CGD+ IADGSLLD LRQV TFGLSLV+LDIRQESERHTDVIDAIT HLGIGSYREW E+K
Sbjct: 426 CGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDK 485

Query: 480 RQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLA 539
           RQEWLLSELRGKRPL   DLP+T+EIADV+  FHV++ELP DSFG YIISMATAPSDVLA
Sbjct: 486 RQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLA 545

Query: 540 VELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599
           VELLQREC V+QPL VVPLFE+LADL++APASV RLFS+DWY +RI GKQ+VM+GYSDSG
Sbjct: 546 VELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSG 605

Query: 600 KDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIH 659
           KDAGRLSAAWQLY+ QEE+ +VAK+YGVKLT+FHGRGGTVGRGGGPTHLAILSQPPDTI+
Sbjct: 606 KDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTIN 665

Query: 660 GSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIAT 719
           GS+RVTVQGEVIE  FGEEHLCF+TLQRF+AATLEHGMHPPVSPKPEWR LMDEMAV+AT
Sbjct: 666 GSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVAT 725

Query: 720 KEYRSIVFQEPRFVEYFRLVSISPI 744
           +EYRS+V +E RFVEYFR    +P 
Sbjct: 726 EEYRSVVVKEARFVEYFRSA--TPE 748

PyMOL of 1jqo

>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883	Back alignment and structure

>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens} Length = 560	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		753
1jqo_A		970	Phosphoenolpyruvate carboxylase; beta barrel, carb	100.0
1jqn_A		883	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	100.0
3odm_A		560	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	100.0
1e0t_A		470	Pyruvate kinase, PK; phosphotransferase, glycolysi	93.89
1sgj_A		284	Citrate lyase, beta subunit; trimer, TIM barrel, s	93.26
1a3w_A		500	Pyruvate kinase; allosteric regulation, tranferase	92.88
3gr4_A		550	Pyruvate kinase isozymes M1/M2; activator, acetyla	92.19
3qtg_A		461	Pyruvate kinase, PK; TIM barrel, glycolysis, trans	91.97
3hqn_D		499	Pyruvate kinase, PK; TIM barrel, T-state enzyme, t	91.24
3qz6_A		261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	90.76
3khd_A		520	Pyruvate kinase; malaria, structural genomics, str	90.62
3qqw_A		332	Putative citrate lyase; TIM beta/alpha-barrel, str	90.34
3gg8_A		511	Pyruvate kinase; malaria, genomics, proteomics, gl	90.26
3r4i_A		339	Citrate lyase; TIM beta/alpha-barrel, structural g	89.74
3qll_A		316	Citrate lyase; beta barrel; 2.45A {Yersinia pestis	89.64
1dxe_A		256	2-dehydro-3-deoxy-galactarate aldolase; class II a	89.05
3t05_A		606	Pyruvate kinase, PK; tetramer, glycolysis, transfe	88.33
1izc_A		339	Macrophomate synthase intermolecular diels-aldera;	87.88
2e28_A		587	Pyruvate kinase, PK; allosteric, transferase; 2.40	87.12
2vws_A		267	YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher	84.21
2v5j_A		287	2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l	83.24
1u5h_A		273	CITE; TIM barrel, structural genomics, PSI, protei	81.51

>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3	Back alignment and structure

Probab=100.00  E-value=3.4e-197  Score=1733.23  Aligned_cols=743  Identities=80%  Similarity=1.234  Sum_probs=657.5

Q ss_pred             hhhhhhhhHHHHhhhCCCCCCCChhHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHhHhhhcCCCchhHHHHHHHhc
Q 004448            5 NLEKMASIDAQLRLLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLT   84 (753)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~lL~evl~e~~G~~~~~~ve~ir~ls~~~~~~~~~~~~~~L~~~l~   84 (753)
                      ..++|+++|+++|+++|++++++..|++|+++||++||+||++++|+++|++||++|.+|+++++..++...++|.+.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~Lr~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~ls~~~~r~~~~~~~~~l~~~l~   88 (970)
T 1jqo_A            9 PGEKHHSIDAQLRQLVPGKVSEDDKLIEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLT   88 (970)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHH
T ss_pred             hHHHHHhhhHHhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHh
Confidence            46889999999999999999999999999999999999999999999999999999999998843334567889999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCCCCCCCCCCcchHHHHHHHH-HHHcCCCHHHHHHHhcc
Q 004448           85 SLDPGDSIVVTKSFSHMLNLANLAEEVQIAYRRRIKLKK-GDFVDENSATTESDIEETLKRL-VVQLKKSPEEVFDALKN  162 (753)
Q Consensus        85 ~L~~~~~~~vaRAFs~~f~L~NiAEe~~r~r~~r~~~~~-~~~~~~~~~~~~~s~~~~l~~L-~~~~g~~~e~i~~~L~~  162 (753)
                      +|+++++..|+||||+||+|+|||||+|++|++|.+... +..++....+.+|||..++.+| + +.|+++++|++.|++
T Consensus        89 ~L~~~~~~~v~RAFs~~~~L~NiAEe~~~~r~~r~~~~~~~~~~~~~~~~~~~sl~~~~~~L~~-~~g~~~~~i~~~L~~  167 (970)
T 1jqo_A           89 GLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVS-EVGKSPEEVFEALKN  167 (970)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHT-TSCCCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCcchHHHHHHHHHH-HcCCCHHHHHHHHhc
Confidence            999999999999999999999999999999987754322 3221111223569999999999 8 899999999999999


Q ss_pred             CceeEeeccCCCccchhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHH
Q 004448          163 QTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSY  242 (753)
Q Consensus       163 ~~i~pVlTAHPTEa~Rrtvl~~~~~I~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~y  242 (753)
                      +.|+|||||||||++|||||+||++|+++|.++++.++++.|+++++++|+++|++||||+++|+.||||.||++||++|
T Consensus       168 ~~v~pVlTAHPTE~~RrTvl~k~~~I~~lL~~l~~~~lt~~e~~~~~~~L~~~I~~lW~TdeiR~~kPtv~DE~~~gl~y  247 (970)
T 1jqo_A          168 QTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSY  247 (970)
T ss_dssp             CEEEEEEECCTTCCSCHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHH
T ss_pred             CceeeeeccCCccccHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhCChhhhccCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004448          243 FHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLM  322 (753)
Q Consensus       243 ~~~~l~~avP~l~~~l~~al~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~  322 (753)
                      |+++||++||.+|++++++|.++|.+..+|...|+|+|||||||||||||||||+||++|+.++|++++++|++++++|.
T Consensus       248 ~~~sl~~avP~~~r~l~~al~~~~~~~~l~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~  327 (970)
T 1jqo_A          248 IHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELM  327 (970)
T ss_dssp             HTTTTTTTHHHHHHHHHHHHHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887554555655566999999999999999999999999999999999999999999999


Q ss_pred             hHhcCccCCHHHHHhHhhhhhcchhhh-hhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCC
Q 004448          323 FELSMWRCNDELRARADGLHRSSKRDA-KHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYT  401 (753)
Q Consensus       323 ~~LS~~~~s~~l~~~~~~~~~~~~~~~-~~~~~f~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~Y~  401 (753)
                      ++||+++||++|++.++...+.+++.. ++|..++..++++||||++|..|+.||.+|+..+...+.+.....+....|.
T Consensus       328 ~eLS~s~~s~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPYR~~L~~i~~rL~~T~~~~~~~l~~~~~~~~~~~~Y~  407 (970)
T 1jqo_A          328 FELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFT  407 (970)
T ss_dssp             HHCCCCCCCHHHHHHHHHHHHHHCCCCCTTCSSSCSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCSTTSCC
T ss_pred             HHcCCCCCCHHHHHHHHHHHhhcccchhcccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCC
Confidence            999999999999987665433333221 3444455667889999999999999999999877655544322112224799


Q ss_pred             CHHHhhHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 004448          402 HVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQ  481 (753)
Q Consensus       402 ~~~ell~dL~~i~~sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~~Y~~l~E~~r~  481 (753)
                      +++||++||++|++||.+||+..+|+|.|.++||+|++|||||++|||||||++|++|++||++++|+++|.+|||++|+
T Consensus       408 ~~~ell~dL~~i~~SL~~~g~~~iA~g~L~~lir~V~~FGfhLa~LDiRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~  487 (970)
T 1jqo_A          408 SIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQ  487 (970)
T ss_dssp             SHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHTTSSSEEEEECCHHHHHHHHHHHHHHHTSCCSTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCChhhhhhhHHHHHHHHHHhCeeccccchhhcchHHHHHHHHHHHHcCCCCcccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCccCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCC
Q 004448          482 EWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEK  561 (753)
Q Consensus       482 ~~L~~eL~~~rpl~~~~~~~s~~~~~~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFET  561 (753)
                      +||.+||.++||+.++..++|++++++|++|++++++++++||+||||||+++||||+|++|+|++|+.++|+|||||||
T Consensus       488 ~~L~~eL~~~rpL~~~~~~~s~~~~evL~~f~~i~~~g~~a~~~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VVPLFET  567 (970)
T 1jqo_A          488 EWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFER  567 (970)
T ss_dssp             HHHHHHHHCCSCCCCTTCCCCHHHHHHHHHHHHHHHSCSTTEEEEEETTCCSTHHHHHHHHHHHHTCCSSCCCEEEEECS
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhChhhhCeEEeCCCCCHHHHHHHHHHHHHcCCCCCCCeeCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhchHHHHHHHhccHHHHHhhcCceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCC
Q 004448          562 LADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGR  641 (753)
Q Consensus       562 i~DL~~a~~im~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgR  641 (753)
                      ++||+|||.||++||++|+||+|++++|||||||||||||||+++|+|+||+||++|+++|+++||+++|||||||||||
T Consensus       568 i~DL~~a~~im~~ll~~p~yr~~l~~~QeVMLGYSDS~KD~G~laA~w~ly~Aq~~L~~v~~~~gV~l~lFHGRGGsvgR  647 (970)
T 1jqo_A          568 LADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGR  647 (970)
T ss_dssp             HHHHHTHHHHHHHHHTCHHHHHHHTSEEEEEEESTTHHHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGG
T ss_pred             HHHHHhHHHHHHHHHhChHHHHhhCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHHHHHHH
Q 004448          642 GGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKE  721 (753)
Q Consensus       642 GGGP~~~ailaqP~gsv~g~iR~TeQGEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~~~~~~~~~~~me~ls~~s~~~  721 (753)
                      ||||+|+||+|||+||++|.||+|||||||++|||+|++|.+|||++++|++++++.++..++++|+++|++||+.|+++
T Consensus       648 GGgp~~~ailaqP~gsv~G~ir~TeQGEvI~~kYg~p~~a~~nLe~~~aA~l~a~l~~~~~~~~~~~~~m~~la~~s~~~  727 (970)
T 1jqo_A          648 GGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEE  727 (970)
T ss_dssp             TCCCHHHHHHTSCTTSCTTEEEEEEEHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHcCCCcccCCceEEEeecHHHHHhcCChHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998765567789999999999999999


Q ss_pred             HHhhhhcCCChhhhhhhcccccccchh
Q 004448          722 YRSIVFQEPRFVEYFRLVSISPIHHHF  748 (753)
Q Consensus       722 Yr~Lv~~~p~F~~yF~~aTPi~~~~~~  748 (753)
                      ||++|+++|+|++||+++||+.|+...
T Consensus       728 Yr~lv~~~p~Fv~yF~~aTP~~ei~~L  754 (970)
T 1jqo_A          728 YRSVVVKEARFVEYFRSATPETEYGRM  754 (970)
T ss_dssp             HHHHHTTCTTHHHHHHHHSCCGGGGGG
T ss_pred             HHHHHhcCCCHHHHHHHhChHHHHHhC
Confidence            999999999999999999999998763

PyMOL of 1jqo

>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A	Back alignment and structure

>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}	Back alignment and structure

>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A	Back alignment and structure

>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5	Back alignment and structure

>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A	Back alignment and structure

>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...	Back alignment and structure

>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}	Back alignment and structure

>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*	Back alignment and structure

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0	Back alignment and structure

>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}	Back alignment and structure

>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}	Back alignment and structure

>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A	Back alignment and structure

>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}	Back alignment and structure

>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}	Back alignment and structure

>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A	Back alignment and structure

>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*	Back alignment and structure

>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5	Back alignment and structure

>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}	Back alignment and structure

>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A	Back alignment and structure

>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A	Back alignment and structure

>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		753
d1jqoa_		936	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	0.0
d1jqna_		880	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	0.0

>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 936	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

 Score =  797 bits (2060), Expect = 0.0
 Identities = 576/716 (80%), Positives = 637/716 (88%), Gaps = 2/716 (0%)

Query: 31  VEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGD 90
           +EYDALL+DRFL+ILQDLHG  +RE VQECYE+SA+YEGK D+ KL ELG  LT L P D
Sbjct: 1   IEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPAD 60

Query: 91  SIVVTKSFSHMLNLANLAEEVQIAYRRRI-KLKKGDFVDENSATTESDIEETLKRLVVQL 149
           +I+V  S  HMLNLANLAEEVQIA+RRR  KLKKG F DE SATTESDIEETLKRLV ++
Sbjct: 61  AILVASSILHMLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEV 120

Query: 150 KKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELD 209
            KSPEEVF+ALKNQTVDLVFTAHPTQS RRSLLQK+ RIRNCLTQL AKDIT DDKQELD
Sbjct: 121 GKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELD 180

Query: 210 EALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINE 269
           EALQREIQAAFRTDEIRR+ PTPQ EMR GMSY HET+WKGVPKFLRRVDTALKNIGINE
Sbjct: 181 EALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINE 240

Query: 270 RVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWR 329
           R+PYN  LI+FSSWMGGDRDGNPRVT EVTRDVCLLARMMAANLY  QIE+LMFELSMWR
Sbjct: 241 RLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWR 300

Query: 330 CNDELRARADGLHRSS-KRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLA 388
           CNDELR RA+ LH SS  +  K+YIEFWKQIPPNEPYRVILG VRDKLYNTRERAR LLA
Sbjct: 301 CNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLA 360

Query: 389 NGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLD 448
           +G+S+I  + ++T +E+FLEPLELCY+SLC CGD+ IADGSLLD LRQV TFGLSLV+LD
Sbjct: 361 SGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLD 420

Query: 449 IRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADV 508
           IRQESERHTDVIDAIT HLGIGSYREW E+KRQEWLLSELRGKRPL   DLP+T+EIADV
Sbjct: 421 IRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADV 480

Query: 509 LDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAA 568
           +  FHV++ELP DSFG YIISMATAPSDVLAVELLQREC V+QPL VVPLFE+LADL++A
Sbjct: 481 IGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSA 540

Query: 569 PASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVK 628
           PASV RLFS+DWY +RI GKQ+VM+GYSDSGKDAGRLSAAWQLY+ QEE+ +VAK+YGVK
Sbjct: 541 PASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVK 600

Query: 629 LTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRF 688
           LT+FHGRGGTVGRGGGPTHLAILSQPPDTI+GS+RVTVQGEVIE  FGEEHLCF+TLQRF
Sbjct: 601 LTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRF 660

Query: 689 SAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPI 744
           +AATLEHGMHPPVSPKPEWR LMDEMAV+AT+EYRS+V +E RFVEYFR  +    
Sbjct: 661 TAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETE 716

PyMOL of d1jqoa_

>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		753
d1jqoa_		936	Phosphoenolpyruvate carboxylase {Escherichia coli	100.0
d1jqna_		880	Phosphoenolpyruvate carboxylase {Escherichia coli	100.0
d1sgja_		231	Citrate lyase, beta subunit {Deinococcus radiodura	92.26
d1dxea_		253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	89.22
d1izca_		299	Macrophomate synthase {Macrophoma commelinae [TaxI	88.12
d1u5ha_		223	Citrate lyase, beta subunit {Mycobacterium tubercu	85.6

>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-193  Score=1715.30  Aligned_cols=718  Identities=79%  Similarity=1.223  Sum_probs=661.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHhHhhhcCCCchhHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhHHH
Q 004448           30 LVEYDALLLDRFLDILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLANLAE  109 (753)
Q Consensus        30 l~~~~~~L~~lL~evl~e~~G~~~~~~ve~ir~ls~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~~f~L~NiAE  109 (753)
                      ++.|+++||++| +||++|+|+++|++||+||.+|++++...+++..++|.+.|++|+++++..|+||||+||+|+||||
T Consensus         1 ~~~D~~llg~ll-~vi~e~~G~~~~~~vE~iR~ls~~~r~~~~~~~~~~L~~~l~~L~~~~~~~v~RAFs~~f~L~NiAE   79 (936)
T d1jqoa_           1 IEYDALLVDRFL-NILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAE   79 (936)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999 8999999999999999999999998876677888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc-CCCCCCCCCCCcchHHHHHHHHHHHcCCCHHHHHHHhccCceeEeeccCCCccchhhHHHHHHHH
Q 004448          110 EVQIAYRRRIKLKK-GDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRI  188 (753)
Q Consensus       110 e~~r~r~~r~~~~~-~~~~~~~~~~~~~s~~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rrtvl~~~~~I  188 (753)
                      |+|++|++|.++.. +..++....+.++||++++.+|+++.|+++++|++.|+++.|+|||||||||++|||||+|+++|
T Consensus        80 ~~~~~rr~R~~~~~~~~~~~~g~~~~~~sl~~al~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrTvL~~~r~I  159 (936)
T d1jqoa_          80 EVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARI  159 (936)
T ss_dssp             HHHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHhcCCCHHHHHHHHhcCceeEEeccCCCCCchHHHHHHHHHH
Confidence            99999988875532 22222223457889999999996467999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCC
Q 004448          189 RNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGIN  268 (753)
Q Consensus       189 ~~~L~~~~~~~~t~~e~~~~~~~L~~~i~~LW~T~~ir~~KPtv~DE~~~~l~y~~~~l~~avP~l~~~l~~al~~~~~~  268 (753)
                      +.+|.++++..++|.|+.+++++|+++|+.||||+++|..||||.||++|||+||+++||++||.+|++|++++.++|++
T Consensus       160 ~~lL~~ld~~~lt~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~~l~y~~~sl~~avP~l~~~l~~al~~~~~~  239 (936)
T d1jqoa_         160 RNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGIN  239 (936)
T ss_dssp             HHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHhhcccCChHHHHHHHHHHHHHHHHHhCccccccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             CCCCCCCCcccccccCCCCCCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccCCHHHHHhHhhhhhcchhh
Q 004448          269 ERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHRSSKRD  348 (753)
Q Consensus       269 ~~~~~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~~~~~r~~~l~~y~~~l~~L~~~LS~~~~s~~l~~~~~~~~~~~~~~  348 (753)
                      ...|..++||+|||||||||||||||||+||++|+.++|+.++++|.+++++|.++||++.++.++......+.+.....
T Consensus       240 ~~~~~~~~~irfGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~~~~~~~~l~~~~~~~  319 (936)
T d1jqoa_         240 ERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSK  319 (936)
T ss_dssp             SCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_pred             cccccCCCceeeeeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhhHHHHHHHhhhhh
Confidence            66777789999999999999999999999999999999999999999999999999999998888766554433222211


Q ss_pred             -hhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCCHHHhhHHHHHHHHHHHhcCCccchh
Q 004448          349 -AKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACGDRPIAD  427 (753)
Q Consensus       349 -~~~~~~f~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~sL~~~~~~~~a~  427 (753)
                       ...+..+....+++||||++|..|+.||.+|.........+.........+|.+++||++||.+|++||.++|+..+|+
T Consensus       320 ~~~~~~~~~~~~~~~EPyR~~L~~i~~RL~~t~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~la~  399 (936)
T d1jqoa_         320 VTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIAD  399 (936)
T ss_dssp             CCTTCSSSCSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred             hHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccCCHHHHHHHHHHHHHHHHHcCcchhhh
Confidence             1112233445678999999999999999999988777665443333344589999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHH
Q 004448          428 GSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIAD  507 (753)
Q Consensus       428 ~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~av~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~~  507 (753)
                      |.|.+||++|++||||||+|||||||++|++|+++|++++|.++|.+|+|++|+++|.++|.++||+.++..+.++++.+
T Consensus       400 ~~L~~Lir~V~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~y~~~~e~~r~~~L~~eL~~~rpl~~~~~~~~~e~~~  479 (936)
T d1jqoa_         400 GSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIAD  479 (936)
T ss_dssp             THHHHHHHHHHHHTTSSSEEEEECCHHHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTTCCCCHHHHH
T ss_pred             hhhHHHHHHHHHccccccchhhhhhhHHHHHHHHHHHHhcCCCCcccCChHHHHHHHHHHhcCCCCCCCcccccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCccCcEEecCCCCcccHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHHhhcC
Q 004448          508 VLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISG  587 (753)
Q Consensus       508 ~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~Vl~L~k~~gl~~~l~VvPLFETi~DL~~a~~im~~Ll~~p~yr~~l~~  587 (753)
                      ++++|++++++++++||+||||||+++||||+|++|+|++|+.++|+||||||||+||+|||.||++||++|+||+||++
T Consensus       480 ~l~~~~~i~~~g~~aig~YIISmt~s~sDvL~V~lLak~~g~~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~  559 (936)
T d1jqoa_         480 VIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKG  559 (936)
T ss_dssp             HHHHHHHHHHSCSTTEEEEEETTCCSTHHHHHHHHHHHHTCCSSCCCEEEEECSHHHHHTHHHHHHHHHTCHHHHHHHTS
T ss_pred             HHHHHHHHHhcCccccccchhccCCcHHHHHHHHHHHHHcCCCCCCCcccccccHHHHHhhHHHHHHHHhChHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeecCCCcchhHHhHhHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCcchhhhhhcCCCCcccCceeeecc
Q 004448          588 KQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQ  667 (753)
Q Consensus       588 ~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~fFHGRGGsvgRGGGP~~~ailaqP~gsv~g~iR~TeQ  667 (753)
                      +||||||||||||||||++|||+||+||++|+++|++|||+++|||||||||||||||+|+||+|||+||++|+||+|||
T Consensus       560 ~QeVMlGYSDS~KDgG~laa~W~ly~Aq~~L~~v~~~~gv~l~~FHGRGGsvgRGGGPt~~ai~sqP~gs~~g~ir~TeQ  639 (936)
T d1jqoa_         560 KQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQ  639 (936)
T ss_dssp             EEEEEEESTTHHHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGGTCCCHHHHHHTSCTTSCTTEEEEEEE
T ss_pred             ceEEEeccccccchhHHHHHHHHHHHHHHHHHHHHHHcCceEEEEecCCCccccCCCChHHHHHhCCCCCcCCceEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHHHHHHHHHhhhhcCCChhhhhhhcccccccch
Q 004448          668 GEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLVSISPIHHH  747 (753)
Q Consensus       668 GEvI~~kYg~~~~A~r~LE~~~~a~l~~s~~~~~~~~~~~~~~me~ls~~s~~~Yr~Lv~~~p~F~~yF~~aTPi~~~~~  747 (753)
                      ||||++|||+|.+|.||||++++|++++++.++..+.++|.++|++||+.|+++||+||+++|+|++||+++|||.++..
T Consensus       640 GEvIs~ky~~~~~a~~~Le~~~aa~l~~~~~~~~~~~~~~~~~~~~ls~~s~~~Yr~lv~~~p~F~~yf~~aTPi~ei~~  719 (936)
T d1jqoa_         640 GEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGR  719 (936)
T ss_dssp             HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSCCGGGGG
T ss_pred             eeehhhhccCHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhhHHHHhh
Confidence            99999999999999999999999999999988888889999999999999999999999999999999999999999976


Q ss_pred             h
Q 004448          748 F  748 (753)
Q Consensus       748 ~  748 (753)
                      .
T Consensus       720 l  720 (936)
T d1jqoa_         720 M  720 (936)
T ss_dssp             G
T ss_pred             c
Confidence            3

PyMOL of d1jqoa_

>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}	Back information, alignment and structure

>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure