Citrus Sinensis ID: 004472

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-

MDRFGPDESPVREYSDEGAYDNNLDRNETEHRSKERNKGKSRGDEKDRRSKDRRDSEKDRKERRREDRDERDKERSKEKPRDRDKDRKEKEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKDREKERESEKDRERDKAREKSREKGREMELDKERSRERDRVSRKAHEEDCARSNDNMPKLDNEGNMNRDINKHGKVSYDDIDDQDNEDAHVSTSGLGDRILKMKEERLKKNSEGAPEILSWVNRSRKIEQIKNVEKKKALQLSKIFEEQDNIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATDEGLTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLNLSAKITSDYFTQEEMLQFKKPKKKKKSIRKKEKLDLDALEAEALSAGLGVEDLGSRKDGRRQAIREEQEKSEAEMKNKAYQSAYAKAEEAIKSLRMEQTRPVKLEEENEEPIADDEDDLYKSLERARKLALKKQEASSGPEAIARLATSQTANEQSTTNEESEEKKVVITELQEFVWGLPVGEEVQKQDRQDVFMDEDEGPRTTDHEMKDEPGGWTEVKETGEEENPSKEDKEEIVPDETIHELAVGKGLAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDLRIFALREQMNLEEL

cccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHccccHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccEEEEEcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccEEEEcHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

ccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHcccccccccHHHHccccccHHHHcccccccccHccccccccccccccHcccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccEEEccccccccccEEEEEEccccccccccccHHHHEEEEEcHHHHHHHHHHHHHHHccccccccccccccccccccHccccHHHcccccEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHccccEEEccHHHHHHHcccccccccccHHHHHccHccccccccccccccccccccccccccccccccccHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHc

mdrfgpdespvreysdegaydnnldrnetEHRSkernkgksrgdekdrrskdrrdsekdrkerrredrderdkerskekprdrdkdrkekepeRDREIEKergkdksrdretekergkdksrdrekerdKTRDKERERGREKHKDREKERESEKDRERDKAREKSREKGREMELDKErsrerdrvsrkaheedcarsndnmpkldnegnmnrdinkhgkvsyddiddqdnedahvstsgLGDRILKMKEERLKknsegapeILSWVNRSRKIEQIKNVEKKKALQLSKIFEeqdnivqgesedeeagqhsshdlaGVKVLHGLDKVMEGGAVVltlkdqqiladgdinedvdmlenieigEQKRRDEAYKAAKKktgiyddkfnddpssekkilpqydepatdegltldargrfTGEAEKKLEELRRRIQGvqannstgdlnlsakitsdyFTQEEMLqfkkpkkkkkSIRKKEKLDLDALEAEALSAglgvedlgsrkdgRRQAIREEQEKSEAEMKNKAYQSAYAKAEEAIKSLRmeqtrpvkleeeneepiaddeDDLYKSLERARKLALKKQEASSGPEAIARLATSqtaneqsttneesEEKKVVITELQEfvwglpvgeevqkqdrqdvfmdedegprttdhemkdepggwtevketgeeenpskedkeeivpdetiHELAVGKGLAGALSLLkdrgtlkegidwggrnmDKKRASLLALLMTLQMLIIDLRIFALREQMNLEEL

mdrfgpdespvreysdegaydnnldrnetehrskernkgksrgdekdrrskdrrdsekdrkerrredrderdkerskekprdrdkdrkekeperdreiekergkdksrdretekergkdksrdrekerdktrdkerergrekhkdrekeresekdrerdkareksrekgremeldkersrerdrvsrkaheedcarsndnmpkldnegnmnrdINKHGKVSYDDIDDQDNEDahvstsglgdriLKMKEErlkknsegapeilswvnrsrkieqIKNVEKKKALQLSKIFEEQDNIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLenieigeqkrrDEAYKaakkktgiyddkfnddpssekkilpqydepatdegltldarGRFTGEAEKKLEELRRRIqgvqannstgdlnlsAKITSDyftqeemlqfkkpkkkkksirkKEKLDLDALEAEAlsaglgvedlgsrkdgrRQAIReeqekseaemkNKAYQSAYAKAEEAIKSLrmeqtrpvkleeeneepiaddeddlYKSLERARKLALkkqeassgpeaIARLAtsqtaneqsttneeseekkVVITELQEFvwglpvgeevqkqdrqdvfmdedegprttdhemkdepggwtevketgeeenpskedkeeivpdETIHELAVGKGLAGALSLLKDRGTLkegidwggrnmdKKRASLLALLMTLQMLIIDLRIFALREQMNLEEL

MDRFGPDESPVREYSDEGAYDNNLDRNETEHRSKERNKGksrgdekdrrskdrrdsekdrkerrredrderdkerskekprdrdkdrkekeperdreiekerGKDKSRDRETekergkdksrdrekerdktrdkerergrekhkdrekeresekdrerdkareksrekGREMELDKERSRERDRVSRKAHEEDCARSNDNMPKLDNEGNMNRDINKHGKVSYDDIDDQDNEDAHVSTSGLGDRILKMKEERLKKNSEGAPEILSWVNRSRKIEQIKNVEKKKALQLSKIFEEQDNIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATDEGLTLDARGRFTGEAekkleelrrrIQGVQANNSTGDLNLSAKITSDYFTQEEMLQFkkpkkkkksirkkekldldaleaealSAGLGVEDLGSRKDGRRQAIREEQEKSEAEMKNKAYQSAYAKAEEAIKSLRMEQTRPVKLeeeneepiaddeddLYKSLERARKLALKKQEASSGPEAIARLATSQTAneqsttneeseekkvvITELQEFVWGLPVGEEVQKQDRQDVFMDEDEGPRTTDHEMKDEPGGWTEVKETGeeenpskedkeeIVPDETIHElavgkglagalsllKDRGTLKEGIDWGGRNMDKKRASllallmtlqmlIIDLRIFALREQMNLEEL

**********************************************************************************************************************************************************************************************************************************************************************LSWV***********************************************LAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLENI***********************************************************************************************************************************************************************************************************************************************************VVITELQEFVWGLPVG*********************************************************TIHELAVGKGLAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDLRIFALR********

**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ADDEDDLYK**************************************************************************************************************************LAVGKGLAGALSLLKDRGT****************ASLLALLMTLQMLIIDLRIFALREQMN****

*************YSDEGAYDNNLD**************************************************************************************************************************************************************************RSNDNMPKLDNEGNMNRDINKHGKVSYDDIDDQDNEDAHVSTSGLGDRILKMKEERLKKNSEGAPEILSWVNRSRKIEQIKNVEKKKALQLSKIFEEQDNIV**************HDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATDEGLTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLNLSAKITSDYFTQEEMLQ*************KEKLDLDALEAEALSAGLGVEDLGSR***************************YAKAEEAIKSLRMEQTRPVKLEEENEEPIADDEDDLYKSLERARK************EAIARL*******************KVVITELQEFVWGLPVGEEVQKQDRQDVFMDEDE************PGGWTE******************VPDETIHELAVGKGLAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDLRIFALREQMNLEEL

*******************************************************************************************************************************************************************************************************************************************************************PEILSWVNRSRKIEQIKNVE*****QLSKIFEEQDNIVQG*****EAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATDEGLTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLNLSAKITSDYFTQEEMLQFKKPKKKKKSIRKKEKLDLDALEAEALS**********************************YQSAYAKAEEAIKSLR***************PIADDEDDLYKSLERARKLALKKQEASSGPEAIARLATSQT*************KKVVITELQEFVWGLPVGE**************************************************EIVPDETIHELAVGKGLAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDLRIFALREQMNLE*L

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MDRFGPDESPVREYSDEGAYDNNLDRNETEHRSKERNKGKSRGDEKDRRSKDRRDSEKDRKERRREDRDERDKERSKEKPRDRDKDRKEKEPERDREIEKERGKDKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHxxxxxxxxxxxxxxxxxxxxxSREKGREMELDKERSRERDRVSRKAHEEDCARSNDNMPKLDNEGNMNRDINKHGKVSYDDIDDQDNEDAHVSTSGLGDRILKMKEERLKKNSEGAPEILSWVNRSRKIEQIKNVEKKKALQLSKIFEEQDNIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATDEGLTLDARGRFxxxxxxxxxxxxxxxxxxxxxNSTGDLNLSAKITSDYFTQEEMLQFKKPxxxxxxxxxxxxxxxxxxxxxALSAGLGVEDLGSRKDGRRQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTRPVKLEEENEEPIADDEDDLYKSLERARKLALKKQEASSGPEAIARLATSQTANEQSTTNEESEEKKVVITELQEFVWGLPVGEEVQKQDRQDVFMDEDEGPRTTDHEMKDEPGGWTEVKETGEEENPSKEDKEEIVPDETIHELAVGKGLAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALLMTLQMLIIDLRIFALREQMNLEEL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		751	2.2.26 [Sep-21-2011]
Q9Z315		806	U4/U6.U5 tri-snRNP-associ	yes	no	0.272	0.254	0.310	5e-15
Q5XIW8		806	U4/U6.U5 tri-snRNP-associ	yes	no	0.271	0.253	0.309	1e-14
F1QBY1		2876	Nipped-B-like protein B O	yes	no	0.199	0.052	0.442	3e-14
O43290		800	U4/U6.U5 tri-snRNP-associ	yes	no	0.272	0.256	0.302	2e-12
Q6PGZ3		629	TRAF3-interacting protein	no	no	0.071	0.085	0.533	0.0001
P41512		829	DNA topoisomerase 1 OS=Xe	N/A	no	0.174	0.158	0.367	0.0004

>sp\|Q9Z315\|SNUT1_MOUSE U4/U6.U5 tri-snRNP-associated protein 1 OS=Mus musculus GN=Sart1 PE=2 SV=1	Back alignment and function desciption

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 30/235 (12%)

Query: 243 RILKMKEERLKKNSEGAPEI---LSWVNRSRKIEQIKNVEKKKALQLSKIFEEQD----- 294
           R+L  K  ++K   E  P +    +W+ RSR++++ K++ +K+A    K+ EE D     
Sbjct: 178 RLLNQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRA----KLLEEMDQEFGV 233

Query: 295 -NIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDM 353
             +V+ E E      +S+ DL G+ V H +D   EG  VVLTLKD+ +L DG+     D+
Sbjct: 234 STLVEEEFEQRRQDLYSARDLQGLTVEHAIDSFREGETVVLTLKDKGVLQDGE-----DV 288

Query: 354 LENIEIGEQKRRDEAYKAAKKKTGIY---DDKFNDDPSSEK--KILPQYDEPATDE---G 405
           L N+ + +++R D+  +  KKK       +D+  DD + +K   IL +YDE    E    
Sbjct: 289 LVNVNMVDKERADKNVELRKKKPDYLPYAEDESVDDLAQQKPRSILAKYDEELEGERPHS 348

Query: 406 LTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLNLSAKITSDYFTQEEMLQF 460
             L+  G   G  E++LEE+R +++ +QA + +   ++  ++ S+Y + EEM+ F
Sbjct: 349 FRLEQGGMADGLRERELEEIRTKLR-LQAQSLS---SVGPRLASEYLSPEEMVTF 399

May play a role in mRNA splicing. May also bind to DNA. Appears to play a role in hypoxia-induced regulation of EPO gene expression.
Mus musculus (taxid: 10090)

>sp\|Q5XIW8\|SNUT1_RAT U4/U6.U5 tri-snRNP-associated protein 1 OS=Rattus norvegicus GN=Sart1 PE=2 SV=1	Back alignment and function description

>sp\|F1QBY1\|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1	Back alignment and function description

>sp\|O43290\|SNUT1_HUMAN U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens GN=SART1 PE=1 SV=1	Back alignment and function description

>sp\|Q6PGZ3\|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1	Back alignment and function description

>sp\|P41512\|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		751
296090475		944	unnamed protein product [Vitis vinifera]	0.954	0.759	0.599	0.0
225462520		902	PREDICTED: uncharacterized protein LOC10	0.917	0.763	0.596	0.0
255550936		873	conserved hypothetical protein [Ricinus	0.902	0.776	0.606	0.0
356523503		882	PREDICTED: uncharacterized protein LOC10	0.924	0.786	0.593	0.0
356519782		842	PREDICTED: uncharacterized protein LOC10	0.880	0.785	0.601	0.0
449447601		939	PREDICTED: uncharacterized protein LOC10	0.944	0.755	0.531	0.0
357441861		936	U4/U6.U5 tri-snRNP-associated protein [M	0.930	0.746	0.526	0.0
297811815		812	hypothetical protein ARALYDRAFT_488536 [	0.793	0.733	0.554	1e-177
147817202		710	hypothetical protein VITISV_017244 [Viti	0.817	0.864	0.569	1e-175
222424580		799	AT5G16780 [Arabidopsis thaliana]	0.826	0.777	0.544	1e-170

>gi\|296090475\|emb\|CBI40671.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/784 (59%), Positives = 598/784 (76%), Gaps = 67/784 (8%)

Query: 7   DESPVREYSDEGAYDNNLDRNETEHRSKERNKG--KSRGDEKDRRSKDR----------- 53
           D+SP R+Y D GAYD+ L+ N  E  SK R+K   KSR +EKD R KDR           
Sbjct: 20  DDSPTRDYHD-GAYDD-LEENGIEKSSKHRSKDRKKSRREEKDHRGKDRERSKAGDGLKE 77

Query: 54  -----RDSEKDR---KERRREDRDERDKERSKEKPRDRDKDR---KEKEPERDREIEKER 102
                +DSEKDR   +ERR+EDRDER+K+R+++K R++D DR   ++KE ERD++  K+R
Sbjct: 78  REKETKDSEKDRVTSRERRKEDRDEREKDRNRDKVREKDYDREKYRDKERERDKD-RKDR 136

Query: 103 GK--------------DKSRDRETEKERGKDKSRDREKERDKTRDKERERGREKHKDREK 148
           GK              D+ RD+E  KE+ +D+ ++REKERD+T+D++RE+ +EK KDREK
Sbjct: 137 GKEKEREREREVDKESDRGRDKERGKEKNRDRDKEREKERDRTKDRDREKEKEKSKDREK 196

Query: 149 ERESEKDRERD-----KAREKSREKGREMELDKERSRERDRVSRKAHEEDCARSND---- 199
           ERE++KDR+RD     K +E+ R+K RE + D++R ++RD+ SRK  +E   RS D    
Sbjct: 197 ERENDKDRDRDAIDKEKGKERIRDKEREADQDRDRYKDRDKGSRKNRDEGHDRSKDGGKD 256

Query: 200 NMPKLDNEGNMNRDINKHGKVSYDDIDD-------QDNEDA---HVSTSGLGDRILKMKE 249
           +  KLD   N +RD+ K G+ S+ D DD       ++ E A     ST+ L +RIL+MKE
Sbjct: 257 DKLKLDGGDNRDRDVTKQGRGSHHDEDDSRAIEHEKNAEGASGPQSSTAQLQERILRMKE 316

Query: 250 ERLKKNSEGAPEILSWVNRSRKIEQIKNVEKKKALQLSKIFEEQDNIVQGESEDEEAGQH 309
           ER+K+ SEG+ E+L+WVNRSRK+E+ +N EK+KALQLSKIFEEQDNI QGES+DE+  +H
Sbjct: 317 ERVKRKSEGSSEVLAWVNRSRKVEEQRNAEKEKALQLSKIFEEQDNIDQGESDDEKPTRH 376

Query: 310 SSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDINEDVDMLENIEIGEQKRRDEAY 369
           SS DLAGVKVLHGLDKV+EGGAVVLTLKDQ ILA+GDINEDVDMLEN+EIGEQKRRDEAY
Sbjct: 377 SSQDLAGVKVLHGLDKVIEGGAVVLTLKDQDILANGDINEDVDMLENVEIGEQKRRDEAY 436

Query: 370 KAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATDEGLTLDARGRFTGEAEKKLEELRRRI 429
           KAAKKKTGIY+DKFND+P SEKKILPQYD+P TDEGL LDA GRFTGEAEKKLEELRRR+
Sbjct: 437 KAAKKKTGIYEDKFNDEPGSEKKILPQYDDPVTDEGLALDASGRFTGEAEKKLEELRRRL 496

Query: 430 QGVQANNSTGDLNLSAKITSDYFTQEEMLQFKKPKKKKKSIRKKEKLDLDALEAEALSAG 489
           QGV  NN   DLN   K +SDY+T EEMLQFKK  KKKKS+RKKEKL++DALEAEA+SAG
Sbjct: 497 QGVSTNNRFEDLNTYGKNSSDYYTHEEMLQFKK-PKKKKSLRKKEKLNIDALEAEAVSAG 555

Query: 490 LGVEDLGSRKDGRRQAIREEQEKSEAEMKNKAYQSAYAKAEEAIKSLRMEQTRPVKLEEE 549
           LGV DLGSR DG+RQ+IREEQE+SEAEM+N AYQ AYAKA+EA K+LR++QT PV+LEE 
Sbjct: 556 LGVGDLGSRNDGKRQSIREEQERSEAEMRNSAYQLAYAKADEASKALRLDQTLPVQLEEN 615

Query: 550 NEEPIADDEDDLYKSLERARKLALKKQE--ASSGPEAIARLA----TSQTANEQSTTNEE 603
             +   +D+++L KSL+RARKL L+KQ+  A+SGP+AIA LA    +SQ  + Q+  + E
Sbjct: 616 ENQVFGEDDEELQKSLQRARKLVLQKQDEAATSGPQAIALLASTTTSSQNVDNQNPISGE 675

Query: 604 SEEKKVVITELQEFVWGLPVGEEVQKQDRQDVFMDEDEGPRTTDHEMKDEPGGWTEVKET 663
           S+E +VV TE++EFVWGL + +E  K D +DVFMDEDE P+ +D E KDE GGWTEVK+T
Sbjct: 676 SQENRVVFTEMEEFVWGLQLEDEAHKPDGEDVFMDEDEAPKASDQERKDEAGGWTEVKDT 735

Query: 664 GEEENPSKEDKEEIVPDETIHELAVGKGLAGALSLLKDRGTLKEGIDWGGRNMDKKRASL 723
            ++E P  E+KEE+VPD+TIHE+AVGKGL+GAL LLK+RGTLKEGI+WGGRNMDKK++ L
Sbjct: 736 DKDELPVNENKEEMVPDDTIHEVAVGKGLSGALQLLKERGTLKEGIEWGGRNMDKKKSKL 795

Query: 724 LALL 727
           + + 
Sbjct: 796 VGIY 799

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225462520\|ref\|XP_002264268.1\| PREDICTED: uncharacterized protein LOC100266959 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255550936\|ref\|XP_002516516.1\| conserved hypothetical protein [Ricinus communis] gi\|223544336\|gb\|EEF45857.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356523503\|ref\|XP_003530377.1\| PREDICTED: uncharacterized protein LOC100793984 [Glycine max]	Back alignment and taxonomy information

>gi\|356519782\|ref\|XP_003528548.1\| PREDICTED: uncharacterized protein LOC100785682 [Glycine max]	Back alignment and taxonomy information

>gi\|449447601\|ref\|XP_004141556.1\| PREDICTED: uncharacterized protein LOC101207335 [Cucumis sativus] gi\|449522278\|ref\|XP_004168154.1\| PREDICTED: uncharacterized LOC101207335 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357441861\|ref\|XP_003591208.1\| U4/U6.U5 tri-snRNP-associated protein [Medicago truncatula] gi\|355480256\|gb\|AES61459.1\| U4/U6.U5 tri-snRNP-associated protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297811815\|ref\|XP_002873791.1\| hypothetical protein ARALYDRAFT_488536 [Arabidopsis lyrata subsp. lyrata] gi\|297319628\|gb\|EFH50050.1\| hypothetical protein ARALYDRAFT_488536 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|147817202\|emb\|CAN77549.1\| hypothetical protein VITISV_017244 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|222424580\|dbj\|BAH20245.1\| AT5G16780 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		751
TAIR\|locus:2149010		820	DOT2 "AT5G16780" [Arabidopsis	0.711	0.651	0.497	4.1e-134
ZFIN\|ZDB-GENE-040718-422		777	sart1 "squamous cell carcinoma	0.539	0.521	0.244	1.8e-19
UNIPROTKB\|F1MZ21		802	SART1 "Uncharacterized protein	0.544	0.509	0.225	1e-15
UNIPROTKB\|F1RU31		803	SART1 "Uncharacterized protein	0.541	0.506	0.235	1.2e-14
MGI\|MGI:1309453		806	Sart1 "squamous cell carcinoma	0.362	0.337	0.272	2.7e-14
RGD\|61930		806	Sart1 "squamous cell carcinoma	0.275	0.256	0.296	3e-14
UNIPROTKB\|G4NCF8		644	MGG_01095 "Uncharacterized pro	0.262	0.305	0.3	1.8e-12
UNIPROTKB\|O43290		800	SART1 "U4/U6.U5 tri-snRNP-asso	0.350	0.328	0.254	5.6e-12
ASPGD\|ASPL0000050690		671	AN1992 [Emericella nidulans (t	0.199	0.223	0.303	6.4e-10
FB\|FBgn0032388		970	CG6686 [Drosophila melanogaste	0.278	0.215	0.227	9e-07

TAIR\|locus:2149010 DOT2 "AT5G16780" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1283 (456.7 bits), Expect = 4.1e-134, Sum P(2) = 4.1e-134
 Identities = 277/557 (49%), Positives = 354/557 (63%)

Query:   171 EMELDKERSRERDRVSRKAHEEDCARSNDNMPKLDN--EGNMNRDINKHGKVSYDDIDDQ 228
             E E DK+R+R ++R S+K+HE+D     D   K     E + NR +N+ G    D++D  
Sbjct:   117 EKEKDKDRARVKERASKKSHEDD-----DETHKAAERYEHSDNRGLNEGG----DNVDAA 167

Query:   229 DNEDAHVSTSGLGDRILKMKEERLKKNSEGAPEILSWVNRSRKIEQIKNVEKKKALQLSK 288
              +     S   L +RILKM+EER KK +E A + LSWV RSRKIE+ +N EK++A QLS+
Sbjct:   168 SS-GKEASALDLQNRILKMREER-KKKAEDASDALSWVARSRKIEEKRNAEKQRAQQLSR 225

Query:   289 IFEEQDNIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVLTLKDQQILADGDIN 348
             IFEEQDN+ QGE+ED E G+H    L+GVKVLHGL+KV+EGGAV+LTLKDQ +L DGD+N
Sbjct:   226 IFEEQDNLNQGENEDGEDGEH----LSGVKVLHGLEKVVEGGAVILTLKDQSVLTDGDVN 281

Query:   349 EDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATDEGLTL 408
              ++DMLEN+EIGEQKRR+EAY+AAKKK GIYDDKFNDDP +EKK+LPQYDE ATDEG+ L
Sbjct:   282 NEIDMLENVEIGEQKRRNEAYEAAKKKKGIYDDKFNDDPGAEKKMLPQYDEAATDEGIFL 341

Query:   409 DARGRFTGEAXXXXXXXXXXIQGVQANNSTGDLNLSAKITSDYFTQEEMLQFXXXXXXXX 468
             DA+GRFTGEA          IQG Q  ++  DLN SAK++SDYF+QEEML+F        
Sbjct:   342 DAKGRFTGEAEKKLEELRKRIQG-QTTHTFEDLNSSAKVSSDYFSQEEMLKFKKPKKKKQ 400

Query:   469 XXXXXXXXXXXXXXXXXXSAGLGVEDLGSRKDGRRQAIREEQEKSEAEMKNKAYQSAYAK 528
                               S GLG EDLGSRKDGRRQA++EE+E+ E E ++ AYQ A AK
Sbjct:   401 LRKKDKLDLSMLEAEAVAS-GLGAEDLGSRKDGRRQAMKEEKERIEYEKRSNAYQEAIAK 459

Query:   529 AEEAIKSLRMEQTRPVKLXXXXXXXXXXXXXXLYKSLERARKLAL-KKQEASSGPEAIAR 587
             A+EA + LR EQ +P K               LYKSLE+AR+LAL KK+EA SGP+A+A 
Sbjct:   460 ADEASRLLRREQVQPFKRDEDESMVLADDAEDLYKSLEKARRLALIKKEEAGSGPQAVAH 519

Query:   588 L---ATSQTAXXXXXXXXXXXXXXXXITELQEFVWGLPVGEEVQKQDRQDVFMDEDEGPR 644
             L   +T+QT                  TE+ +FVWGL    +V+K + +DVFM+ED  P+
Sbjct:   520 LVASSTNQTTDDNTTTGDETQENTVVFTEMGDFVWGLQRENDVRKPESEDVFMEEDVAPK 579

Query:   645 TTDHEMKDEPGGWTEVKETGXXXXXXXXXXXXIVPDETIHEXXXXXXXXXXXXXXKDRGT 704
                   ++ P G TEV +T             I PDE IHE              KDRGT
Sbjct:   580 APVEVKEEHPDGLTEVNDTDMDAAEDSSDTKEITPDENIHEVAVGKGLSGALKLLKDRGT 639

Query:   705 LKEGIDWGGRNMDKKRA 721
             LKE ++WGGRNMDKK++
Sbjct:   640 LKEKVEWGGRNMDKKKS 656

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0009933 "meristem structural organization" evidence=RCA;IMP

GO:0048528 "post-embryonic root development" evidence=IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

ZFIN\|ZDB-GENE-040718-422 sart1 "squamous cell carcinoma antigen recognised by T cells" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MZ21 SART1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RU31 SART1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1309453 Sart1 "squamous cell carcinoma antigen recognized by T cells 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|61930 Sart1 "squamous cell carcinoma antigen recognized by T cells" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NCF8 MGG_01095 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

UNIPROTKB\|O43290 SART1 "U4/U6.U5 tri-snRNP-associated protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000050690 AN1992 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

FB\|FBgn0032388 CG6686 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00007133001	SubName- Full=Chromosome undetermined scaffold_184, whole genome shotgun sequence; (631 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		751
pfam03343		603	pfam03343, SART-1, SART-1 family	1e-43
PRK12678		672	PRK12678, PRK12678, transcription termination fact	4e-12
PRK12678		672	PRK12678, PRK12678, transcription termination fact	1e-10
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	1e-09
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-09
PRK12678		672	PRK12678, PRK12678, transcription termination fact	4e-09
PRK12678		672	PRK12678, PRK12678, transcription termination fact	5e-09
PRK12678		672	PRK12678, PRK12678, transcription termination fact	5e-09
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	5e-09
PRK12678		672	PRK12678, PRK12678, transcription termination fact	1e-08
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-08
PRK12678		672	PRK12678, PRK12678, transcription termination fact	3e-08
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	3e-08
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	4e-08
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-08
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	6e-08
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	7e-08
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-07
PRK12678		672	PRK12678, PRK12678, transcription termination fact	1e-06
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-06
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	2e-05
pfam08648		158	pfam08648, DUF1777, Protein of unknown function (D	3e-05
PRK10811		1068	PRK10811, rne, ribonuclease E; Reviewed	5e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-05
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	6e-05
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	6e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-05
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	2e-04
pfam10243		506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	0.001
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	0.001
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
PRK12678		672	PRK12678, PRK12678, transcription termination fact	0.002
pfam08648		158	pfam08648, DUF1777, Protein of unknown function (D	0.002
pfam06375		561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
PRK00247		429	PRK00247, PRK00247, putative inner membrane protei	0.002
TIGR01622		457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	0.004
pfam06375		561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.004
pfam05793		528	pfam05793, TFIIF_alpha, Transcription initiation f	0.004

>gnl\|CDD\|217502 pfam03343, SART-1, SART-1 family	Back alignment and domain information

 Score =  166 bits (422), Expect = 1e-43
 Identities = 161/520 (30%), Positives = 250/520 (48%), Gaps = 71/520 (13%)

Query: 226 DDQDNEDAHVSTSGLGDRILKMKEERLKKNSEGAPEIL-----------SWVNRSRKIEQ 274
             Q+  +A      L ++I K +E+R + +  G  + L           +W+ +S+K ++
Sbjct: 44  KRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQK 103

Query: 275 IKNVEKKKALQLSKIFEEQDNIVQGESEDEEAGQHSSHDLAGVKVLHGLDKVMEGGAVVL 334
            K  E+KKAL L             E E E A +++S DLAG+KV H +++  EG  V+L
Sbjct: 104 KKEAERKKALLLD------------EKEKERAAEYTSEDLAGLKVGHKVEEFEEGEDVIL 151

Query: 335 TLKDQQILADGDINEDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKIL 394
           TLKD  +L D D     D LEN+E+ E+++  +  +  KKK     D  +DD  +++ IL
Sbjct: 152 TLKDTGVLEDEDE---GDELENVELVEKEKDKKNLELKKKKP--DYDPDDDDKFNKRSIL 206

Query: 395 PQYDEPATDEG------LTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLNLSAKIT 448
            +YDE    +        TLD+ G    EAEKK +E++++   ++ NN + D + +    
Sbjct: 207 SKYDEEIEGKKKKSDNLFTLDSGGSTDDEAEKKRQEVKKK---LKINNVSLDDDSTETPA 263

Query: 449 SDYFTQEEMLQFKKPKKKKKSIRKKEKLDLDALEAEALSAGLGVEDLGSRKDGRRQAIRE 508
           SDY+   EM++FKKPKKKKK  +KK + DLD  E E  + GLG  D GSRKD   +    
Sbjct: 264 SDYYDVSEMVKFKKPKKKKKK-KKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENA-- 320

Query: 509 EQEKSEAEMKNKAYQSAYAKAEEAIKSLRMEQTRPVKLEEENEEPIADDEDDLYKSLERA 568
                                       R+E +   + EE+ ++   +D+DDL  SL + 
Sbjct: 321 ----------------------------RLEDSPKKRKEEQEDDDFVEDDDDLQASLAKQ 352

Query: 569 RKLALKKQEASSGPEAIARLATSQTANEQSTTNEESEEKKVVITELQEFVWGLPVGEEVQ 628
           R+LA KK++    PE IAR   ++  +E      E+ +  +VI E  EFV  L      +
Sbjct: 353 RRLAQKKRK-KLRPEDIARQI-AEERSEDEEEAAENNDNGIVIDETSEFVRSLQKEPLEE 410

Query: 629 KQDRQDVFMDEDEGPRTTDHEMKDEPGGWTEVKETGEEENPSKEDKEEIVPDETIH-ELA 687
           K + +D  ++E       D + +DE G         + +   +E+ +E +P   +  E  
Sbjct: 411 KPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEPT 470

Query: 688 VGKGLAGALSLLKDRGTLKEGIDWGGRNMDKKRASLLALL 727
           VG GLA AL LLK RG LK+      R    K    L LL
Sbjct: 471 VGGGLAAALKLLKSRGILKKNQLERERREFLKEKERLKLL 510

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)	Back alignment and domain information

>gnl\|CDD\|236766 PRK10811, rne, ribonuclease E; Reviewed	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)	Back alignment and domain information

>gnl\|CDD\|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)	Back alignment and domain information

>gnl\|CDD\|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated	Back alignment and domain information

>gnl\|CDD\|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family	Back alignment and domain information

>gnl\|CDD\|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)	Back alignment and domain information

>gnl\|CDD\|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		751
KOG2217		705	consensus U4/U6.U5 snRNP associated protein [RNA p	100.0
PF03343		613	SART-1: SART-1 family; InterPro: IPR005011 This fa	100.0
KOG4676		479	consensus Splicing factor, arginine/serine-rich [R	94.54
KOG2217		705	consensus U4/U6.U5 snRNP associated protein [RNA p	93.9
KOG4676		479	consensus Splicing factor, arginine/serine-rich [R	89.77

>KOG2217 consensus U4/U6	Back alignment and domain information

Probab=100.00  E-value=1e-62  Score=548.54  Aligned_cols=503  Identities=29%  Similarity=0.406  Sum_probs=364.2

Q ss_pred             hhhhhhhhhhccCCCCccccccCCCcccccccCCCcCCccc------ccCCcccccCchhhhhhHHHHHHHHHhhcC---
Q 004472          186 SRKAHEEDCARSNDNMPKLDNEGNMNRDINKHGKVSYDDID------DQDNEDAHVSTSGLGDRILKMKEERLKKNS---  256 (751)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~------~~d~~~~~~~~~eL~erI~~~kekR~~~~k---  256 (751)
                      +--..+-+.-+.++|.--++...+.+.+    |--..|...      ...|.-.......|++++..++++|.++..   
T Consensus        52 slSIeETNklRakLGlkPlev~~~K~~~----~~~e~~~~ae~~e~r~~~nlk~~~~~~~~~ekl~~akekr~~~~~l~k  127 (705)
T KOG2217|consen   52 SLSIEETNKLRAKLGLKPLEVNSEKSTD----GTDEEHSAAETNELRPALNLKEKPEQKDLREKLKQAKEKRLLNEKLEK  127 (705)
T ss_pred             ccchhHhHHHHHhcCCCccccccccccc----cccchhhhhhhhhcchhhcccccchhhhHHHHHHHhhHHHHHHHHHHH
Confidence            3344455566666776555554444331    111212211      223444556678999999999999977742   


Q ss_pred             --------CCCchHHHHHHHhhhHHHHhHHHHHHHHHHhhhHHHhhhhhcCCCch--hhhccCCcCCCCCCeeecccccc
Q 004472          257 --------EGAPEILSWVNRSRKIEQIKNVEKKKALQLSKIFEEQDNIVQGESED--EEAGQHSSHDLAGVKVLHGLDKV  326 (751)
Q Consensus       257 --------ddddD~~sWv~ksrk~e~~kk~Eke~A~krAk~leE~D~~~~v~~~~--~~~~~Yt~~DL~GlkV~H~~~~f  326 (751)
                              ++.+||++||.+||..+.    ++..|..+|++|.+++++||.-...  ..+..|...||.||+|+|+++.|
T Consensus       128 iktl~e~de~~dd~aswv~k~r~~~~----e~~~a~~rA~~l~~~dee~g~~~~~~~~~~~~~~~sdL~G~kV~Hg~e~f  203 (705)
T KOG2217|consen  128 IKTLAEKDEEPDDAASWVEKMRQNED----EKNLANMRAKALSELDEESGIVTLKRKGNQKEYGNSDLHGVKVSHGIEAF  203 (705)
T ss_pred             HHHHhhcccchhhHHHHHHHHhhhhh----hhhhhhhhhhhhhhhhhhhchhhccccccCCCCCCcccccceeecchhhh
Confidence                    345899999999999977    6778999999999999999722111  24668999999999999999999


Q ss_pred             ccCCcEEEeecCccccccCCCCCCcccccchhhhhhhhHHHHHHHHhccCCCCCCCCCCCCCCCCcCCcccCCcCCC---
Q 004472          327 MEGGAVVLTLKDQQILADGDINEDVDMLENIEIGEQKRRDEAYKAAKKKTGIYDDKFNDDPSSEKKILPQYDEPATD---  403 (751)
Q Consensus       327 ~eG~~~ILTLKD~~VLdd~d~~ee~D~LeNv~L~e~er~~~~l~~kKKk~~~YDde~~dd~~~~k~IL~KYDEEieg---  403 (751)
                      .+|.+|||||||++||+++|++...|+|+||.+++..+.+..+.+.  +..+||+.++   ..++++|++||++.+|   
T Consensus       204 ~eg~~~ILTLKD~~VLdd~dv~n~~D~lenvk~ve~kkrne~~~~~--~~e~ydD~~n---~k~~s~l~k~dee~E~e~~  278 (705)
T KOG2217|consen  204 SEGKDVILTLKDQSVLDDGDVVNLVDVLENVKNVELKKRNEKYELY--PDEMYDDLGN---KKPRSELSKYDEELEGEGK  278 (705)
T ss_pred             ccCCceEEEeccccccccccchhhHHHHHHHHHHHHhccCchhccc--ccccchhhcc---ccchhhhccCChhhhcccC
Confidence            9999999999999999998765557888888888877766666664  2345666443   3678999999999887   


Q ss_pred             CCeeeCCCCCcChHHHHHHHHHHHHHhhhhccCccCccC-CCcccCCccccHHhhhhccCccccchhhhhhhccchhhHH
Q 004472          404 EGLTLDARGRFTGEAEKKLEELRRRIQGVQANNSTGDLN-LSAKITSDYFTQEEMLQFKKPKKKKKSIRKKEKLDLDALE  482 (751)
Q Consensus       404 ~~F~L~~~G~~~~~~e~~~ee~r~kL~~~~~~~~lesL~-~~~~~aSDY~t~eEm~kFKKPKKKKKK~RkK~k~d~ddle  482 (751)
                      ++|.|+..|.++++.++++++++.+|++.    .+.+|. ..+.++|+|||++||.+|||||| +|++|++. +.+.+|.
T Consensus       279 k~~~l~~~g~id~e~ekkl~e~r~ki~gk----~~~~~e~~n~~las~~~S~eem~kFkk~Kk-~kklrkk~-l~asdl~  352 (705)
T KOG2217|consen  279 KQFRLTTHGTIDGEREKKLEEIRNKIAGK----TLTGLEDVNYRLASDYYSQEEMGKFKKPKK-KKKLRKKN-LRASDLR  352 (705)
T ss_pred             cceeeecccccchhhHHHHHHHHHHhccC----CccchhhcCHHHhhhhcCHHHhhcccchhH-Hhhhhccc-ccccccc
Confidence            68999999999999999999999998865    233443 23689999999999999999999 89999986 7889999


Q ss_pred             HHhhhcCCCCCCCCCccccchhhhHHHHHHHHHHHhhHhhHHHHHHHHHHHHhhhhhccCCCCccccCCCCCCCChHHHH
Q 004472          483 AEALSAGLGVEDLGSRKDGRRQAIREEQEKSEAEMKNKAYQSAYAKAEEAIKSLRMEQTRPVKLEEENEEPIADDEDDLY  562 (751)
Q Consensus       483 ~e~~~~~~~~~DlGSR~r~rr~~~~~e~e~~d~~~r~~~~~~a~~kA~e~s~~~r~~~~~~~~~~~~e~~~~~eDDeDLQ  562 (751)
                      |.+++.+.+++|||||.+|+++......|.+..+.+..                        .+     ..|+ +|++||
T Consensus       353 ~~~~~~~~~~~Dlgsr~~gr~~d~e~~~mee~~p~~~~------------------------~~-----q~v~-~dDeL~  402 (705)
T KOG2217|consen  353 PLAIGDGMEISDLGSRDSGRREDEELSKMEEEKPQRIN------------------------EV-----QEVA-EDDELQ  402 (705)
T ss_pred             hhhcccccccccccccccchhhhhhHhhhhccccccch------------------------hh-----hhcc-chhhhh
Confidence            99999999999999988888777665555543321100                        00     1244 455999


Q ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHh-hccccccCc---ccccccCceEeechHHHhhcCCCCc----ccccc-ccc
Q 004472          563 KSLERARKLALKKQEASSGPEAIARLATS-QTANEQSTT---NEESEEKKVVITELQEFVWGLPVGE----EVQKQ-DRQ  633 (751)
Q Consensus       563 asLaraRRla~KK~~~~~~Pe~IA~~~~~-~~~~~~~~~---~~~~~~gglVfdeTSEFvrtL~~~~----~~~R~-e~e  633 (751)
                      ..|+++|+++|+..+.  -+.+.+.++.. +....+...   .-+...+.|||+.|+|||++||.|+    ++++- +..
T Consensus       403 ~~lak~Rkl~q~~~~~--~~d~~e~~~~~~e~~~~~~~~e~e~~~~~~~~i~~~~tte~~rtlg~i~t~g~egnrn~d~~  480 (705)
T KOG2217|consen  403 RPLAKARKLKQKRDKQ--LKDDGEKVLKSLEKSRSMVVDEKESFDDTRGAIVLDATTEFCRTLGDITTYGLEGNRNVDIN  480 (705)
T ss_pred             hHHHHHHHHHHHhhhh--ccccHHHHHHHHHHhhhcccccccCccCccceeeehhhhHHHHhccCccccccccccccchh
Confidence            9999999999987651  22333333321 112222111   1233458999999999999999987    46664 223


Q ss_pred             cccCCcCCCCC----CCCCCCC-CCCCCcccccCCCccCCCCCCccc--ccCCCcccchhhhcccHHHHHHHHHhcCCcc
Q 004472          634 DVFMDEDEGPR----TTDHEMK-DEPGGWTEVKETGEEENPSKEDKE--EIVPDETIHELAVGKGLAGALSLLKDRGTLK  706 (751)
Q Consensus       634 Dv~m~e~~~~~----~~~ee~~-ee~ggWs~V~~de~~~~~d~e~~e--e~~~~~~~eEp~Vg~GLAAAL~LLk~KGlLk  706 (751)
                      + +|++.....    +.+++.. .++++|..|++++.....+....+  .....++..+|.|+.|||.+|.||.++|||.
T Consensus       481 e-v~df~~~E~~~~~~e~~~~~~~e~~~~~~vaedap~~~~d~~~~~~~~~~~~al~~e~dvk~~v~~~~~l~~~~G~~~  559 (705)
T KOG2217|consen  481 E-VTDFHTTEESENNVETEEVELEEPGTWEGVAEDAPKEEDDVGAVESNDFSGLALDEEPDVKEGVATELDLALKKGKLQ  559 (705)
T ss_pred             h-hccccccccccccCCcccccccccccccccCCCCccccccccchhcccccccccccchhhhhhhhHHHHHhhhccccc
Confidence            2 333322221    2233333 457789999988765433322111  1112345689999999999999999999999


Q ss_pred             cccccCCCCcchhhhHHHHHHhhhhHHHHHHHHH
Q 004472          707 EGIDWGGRNMDKKRASLLALLMTLQMLIIDLRIF  740 (751)
Q Consensus       707 e~vq~~gR~~dkkks~~~~vy~~~~~~~~d~~~~  740 (751)
                      .+..+..|...+++++..+.||..++..++.+..
T Consensus       560 ~~~~kl~~~~~~~kh~~~~~y~~edk~~~~kk~~  593 (705)
T KOG2217|consen  560 NNSEKLRRDRRKKKHLGTKTYTIEDKHAADKKVG  593 (705)
T ss_pred             chHHhhhccccchhhhcccccchhhhhhhhhhhc
Confidence            9989999999999999999999999888665543

U5 snRNP associated protein [RNA processing and modification]

>PF03343 SART-1: SART-1 family; InterPro: IPR005011 This family of proteins appear to contain a leucine zipper [] and may therefore be a family of transcription factors	Back alignment and domain information

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]	Back alignment and domain information

>KOG2217 consensus U4/U6	Back alignment and domain information

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		751
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-09
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	8e-09
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	2e-08
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	6e-08
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-07
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	5e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	3e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-04

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 1/192 (0%)

Query: 2   DRFGPDESPVREYSDEGAYDNNLDRNETEHRSKERNKGKSRGDEKDRRSKDRRDSEKDRK 61
                +    RE     + D        +   + R++ +S+  ++DR+ +  R  E+ R+
Sbjct: 242 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARR 301

Query: 62  ERRREDRDERDKERSKEKPRDRDKDRKEKEPERDREIEKERGKDKSRDRETEKERGKDKS 121
           ER R++          E     D    +  P        +  ++K RDR+ E+ R     
Sbjct: 302 ERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSE 361

Query: 122 RDREKERDKTRDKERERGR-EKHKDREKERESEKDRERDKAREKSREKGREMELDKERSR 180
           R+R ++RD+ RD++RE  R E+  +R ++        +D   E      R+M ++ E   
Sbjct: 362 RERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGD 421

Query: 181 ERDRVSRKAHEE 192
                      E
Sbjct: 422 GYLAPENGYLME 433

PyMOL of 3pgw

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00