Citrus Sinensis ID: 004500

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLRRFLLRLNFNSFFEMTARGVLNVVRQRPAITVLNQQ
cHHHHHHHHcccccccEEcccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccEEEEccccccccccccccHHHHHHcccccccccccccccEEEEcccccccccHHHHHHHHHHccHHHHcccccccccHHHHHHHHcccccccccccccccccccHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccEEEEEEEccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHcccccccccccccccccccccc
cHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccEEEEEEcccccccccccccccccHHHHcccHHcccccHccccEEcHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccEEEcccccccccccccccccccEEEEcccEEEEEEEcHHHccccccEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHccHHHHHHEEEEEHHHHcccccccHHHHHHHHHcHHHHHHHHcccccccccccccccccccc
MLHELLLALLGYTgdliiderehqnsaatplsgdapiseecsfklapdisfiepsERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELskskterpsvYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIerddirggQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDqhgeffirrqedrdtehcsshsdVSEKLARLStdytsvtdwHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVlrnpssafrfqdqLITRSSQkiqgvtgrfsiqkeplldmkligeellpqsdADKIEAMLQglkepsefhkRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESrqlmrlpprqstaeadlMVPFQLAAIKTISEEDKYFSRVslrmpsfgitvksphvdllkakayadgtsgaalssgnsdisldgwDGIAleysvdwplqlfFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKhrndrinysksqqrrqtCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIenqessentpelEHITEEFNKKSNSLYTILRStrlagsqraPFLRRFLLRLNFNSFFEMTARGVLNvvrqrpaitvlnqq
MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASkarnlswirsanaspleraaelskskterpsvyrRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSafrfqdqlitrssqkiqgvtgrfsiqkepllDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMpsfgitvksphVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFakhrndrinysksqqrrqtcrPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESSENTPELEHITEEFNKKSNSLYTILRStrlagsqraPFLRRFLLRLNFNSFFEMTARGvlnvvrqrpaitvlnqq
MlhelllallGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPflrrfllrlnfnsffEMTARGVLNVVRQRPAITVLNQQ
***ELLLALLGYTGDLIID*********************CSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIR**********************VYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIR********************ARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEE**********************FHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESR*************ADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAAL***NSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINY*******QTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIE***********************SLYTILRSTRLAGSQRAPFLRRFLLRLNFNSFFEMTARGVLNVVRQRPAITV****
MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPL***A****SKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD*********VSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMR*****STAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKS***************************SLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYF***************RRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIEN**************EEFNKKSNSLYTILRSTRL**SQRAPFLRRFLLRLNFNSFF***********************
MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASP**************PSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQ*****************LARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINY**********RPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLRRFLLRLNFNSFFEMTARGVLNVVRQRPAITVLNQQ
MLHELLLALLGYTGDLIIDERE***SAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARN************************RPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDR***********************SVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRND***YSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLRRFLLRLNFNSFFEMTARGV****************
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MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLRRFLLRLNFNSFFEMTARGVLNVVRQRPAITVLNQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query748 2.2.26 [Sep-21-2011]
Q9M350745 Gamma-tubulin complex com yes no 0.971 0.975 0.766 0.0
Q9SC88739 Gamma-tubulin complex com N/A no 0.967 0.979 0.748 0.0
Q9UGJ1667 Gamma-tubulin complex com yes no 0.863 0.968 0.298 1e-82
Q9D4F8667 Gamma-tubulin complex com yes no 0.859 0.964 0.297 8e-81
Q9VKU7650 Gamma-tubulin complex com yes no 0.779 0.896 0.245 4e-39
Q5R5J6902 Gamma-tubulin complex com no no 0.720 0.597 0.196 5e-23
Q9BSJ2902 Gamma-tubulin complex com no no 0.720 0.597 0.196 1e-22
Q921G8905 Gamma-tubulin complex com no no 0.716 0.592 0.192 8e-22
Q9USQ2832 Spindle pole body compone yes no 0.589 0.530 0.225 8e-20
Q95ZG4813 Spindle pole body compone yes no 0.596 0.548 0.209 1e-19
>sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2 Back     alignment and function desciption
 Score = 1173 bits (3034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/738 (76%), Positives = 636/738 (86%), Gaps = 11/738 (1%)

Query: 11  GYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYY 70
           G+TGDLI+DERE + +     + D+P+S+EC+FKLAPDISFIEPSERDL+E++I LGFYY
Sbjct: 11  GFTGDLIVDEREQRKTLGLAFNSDSPLSDECTFKLAPDISFIEPSERDLIERLIKLGFYY 70

Query: 71  REIDRFASKARNLSWIRSANA-SPLERAAELSK-SKTERPSVYRRAIANGIVEILSVYRS 128
           RE+DRFA K+RNLSWIRS  +  PLERA ELSK S+ ++PSVYRRAIANGI EILSVYRS
Sbjct: 71  RELDRFAKKSRNLSWIRSVTSVHPLERADELSKQSREKKPSVYRRAIANGIGEILSVYRS 130

Query: 129 AVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCH 188
           AVL IEQKLL+ET PILATVT+GLNKFFVLFPPLYE++LEIERDDIRGGQLLN+L+KRCH
Sbjct: 131 AVLHIEQKLLAETTPILATVTEGLNKFFVLFPPLYEVILEIERDDIRGGQLLNVLNKRCH 190

Query: 189 CGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDV 248
           CG+PEL+ C+QRLLW+GHQVMYNQLA+WMVYGILQD HGEFFI+RQ+D D +H SS  +V
Sbjct: 191 CGVPELRTCLQRLLWNGHQVMYNQLAAWMVYGILQDPHGEFFIKRQDDGDLDHRSSQEEV 250

Query: 249 SEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQ 308
           SEKLAR S   TS+TDWH GFHI LDMLP+YI MR+ ESILFAGKA+RVLRNPS AF+FQ
Sbjct: 251 SEKLARTSVHETSLTDWHSGFHISLDMLPDYIPMRLGESILFAGKAIRVLRNPSPAFQFQ 310

Query: 309 D----QLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSE 364
                Q   R SQ+I+G       + E  LD  L G ELLPQS+ADKIEAML+ LKE SE
Sbjct: 311 KDKSFQQTMRGSQRIRGFMHSDFPETETELDADLTGGELLPQSEADKIEAMLKDLKESSE 370

Query: 365 FHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQL 424
           FHKRSFEC VDS+RAIAASHLWQLVVVRA+LNGHLKALKDYFLLEKGDFFQCFLEESRQL
Sbjct: 371 FHKRSFECTVDSVRAIAASHLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQL 430

Query: 425 MRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAY 484
           MRLPPRQST E+DLMVPFQLAA KTI+EEDKYFSRVSLRMPSFG+TV+S   D++++K  
Sbjct: 431 MRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVS 490

Query: 485 ADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQ 544
             G +        SD S+DGWD IALEYSVDWP+QLFFTQEVLSKY KVFQYL+RLKRTQ
Sbjct: 491 LTGKANLT-----SDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQ 545

Query: 545 MELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQ 604
           MELEKSWASVMHQDH   A+HR D +N S SQQRRQ  RPMWRVREHMAFLIRNLQFYIQ
Sbjct: 546 MELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQ 605

Query: 605 VDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQF 664
           VDVIE+QW +LQ HI +S DFTELVGFHQEYLSALISQSFLD+GSVSRILD IMKLC+QF
Sbjct: 606 VDVIESQWKVLQTHIHDSQDFTELVGFHQEYLSALISQSFLDIGSVSRILDSIMKLCLQF 665

Query: 665 CWAIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLRRFLLRLNFNSF 724
           CW IENQES+ NT ELE+I EEFNKKSNSLYTILRS++LAGSQRAPFLRRFLLRLNFNSF
Sbjct: 666 CWNIENQESNPNTSELENIAEEFNKKSNSLYTILRSSKLAGSQRAPFLRRFLLRLNFNSF 725

Query: 725 FEMTARGVLNVVRQRPAI 742
           +E TARGVLNVVRQRPA+
Sbjct: 726 YEATARGVLNVVRQRPAL 743
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1 Back     alignment and function description
>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1 Back     alignment and function description
>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2 Back     alignment and function description
>sp|Q9VKU7|GCP4_DROME Gamma-tubulin complex component 4 homolog OS=Drosophila melanogaster GN=Grip75 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Back     alignment and function description
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 Back     alignment and function description
>sp|Q9USQ2|ALP6_SCHPO Spindle pole body component alp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp6 PE=1 SV=2 Back     alignment and function description
>sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query748
225437400743 PREDICTED: gamma-tubulin complex compone 0.969 0.975 0.831 0.0
255564194756 gamma-tubulin complex component, putativ 0.981 0.970 0.825 0.0
224128466728 tubulin gamma complex-associated protein 0.953 0.979 0.807 0.0
42565903745 gamma-tubulin complex component 4-like p 0.971 0.975 0.766 0.0
297820114745 tubulin family protein [Arabidopsis lyra 0.971 0.975 0.768 0.0
356535143732 PREDICTED: gamma-tubulin complex compone 0.959 0.980 0.781 0.0
356500339733 PREDICTED: gamma-tubulin complex compone 0.962 0.982 0.780 0.0
449442557754 PREDICTED: gamma-tubulin complex compone 0.983 0.976 0.778 0.0
7629996738 putative protein [Arabidopsis thaliana] 0.962 0.975 0.758 0.0
22095729739 RecName: Full=Gamma-tubulin complex comp 0.967 0.979 0.748 0.0
>gi|225437400|ref|XP_002270318.1| PREDICTED: gamma-tubulin complex component 4 homolog [Vitis vinifera] gi|297743902|emb|CBI36872.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1266 bits (3275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/735 (83%), Positives = 660/735 (89%), Gaps = 10/735 (1%)

Query: 11  GYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYY 70
           GYTGDLIIDERE   S    LS DAP+SE+ +FKLAPD+SFI PSERDL+EK+ITLGFYY
Sbjct: 11  GYTGDLIIDEREQHKSLGINLSPDAPVSEDRTFKLAPDLSFIHPSERDLIEKVITLGFYY 70

Query: 71  REIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAV 130
           RE+DRFA+K+R+LSWIRS N SPL R +EL K K ++ S Y RAIANGIVEILSVYRSAV
Sbjct: 71  RELDRFATKSRDLSWIRSTNVSPLSRTSELLKGKPQKSSAYGRAIANGIVEILSVYRSAV 130

Query: 131 LLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCG 190
           L IEQ LLS+  PILATV QGLNKFFVL PPLYEL+LEIERDDI GGQLLNLLHKRCHCG
Sbjct: 131 LHIEQILLSDPTPILATVIQGLNKFFVLLPPLYELILEIERDDICGGQLLNLLHKRCHCG 190

Query: 191 MPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSE 250
           +PELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD EH +S SD+ E
Sbjct: 191 VPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDVEHEASPSDMVE 250

Query: 251 KLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQ 310
           KLAR+STD  S+TDWHLGFHIFLDMLP+YIHMR+AESILFAGKA+RVLRNPSSAFRFQD 
Sbjct: 251 KLARMSTDDASLTDWHLGFHIFLDMLPDYIHMRVAESILFAGKAIRVLRNPSSAFRFQDT 310

Query: 311 L----ITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFH 366
           L    I + S ++QG+TGRFS QKEP +DM+LIGEELLPQS+ADKIEAMLQ LKE SEFH
Sbjct: 311 LNHQQIPKGSHRVQGLTGRFSFQKEPFMDMQLIGEELLPQSEADKIEAMLQELKESSEFH 370

Query: 367 KRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMR 426
           KRSFECAVDSIRAIAASHLWQLVVVRA+LNGHLKALKDYFLL KGDFFQCFLEESRQ+MR
Sbjct: 371 KRSFECAVDSIRAIAASHLWQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEESRQMMR 430

Query: 427 LPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYAD 486
           LPPRQSTAEADLMVPFQLAAIKTI +EDKY+SRVSLRMPSFGITVKS   DL K K YAD
Sbjct: 431 LPPRQSTAEADLMVPFQLAAIKTIGDEDKYYSRVSLRMPSFGITVKSSQADLPKEKTYAD 490

Query: 487 GTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQME 546
           G  G+      S++SL+GWDGIALEYSVDWPLQLFFTQEVLSKY +VFQYLLRLKRTQME
Sbjct: 491 GILGS------SEMSLEGWDGIALEYSVDWPLQLFFTQEVLSKYRRVFQYLLRLKRTQME 544

Query: 547 LEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVD 606
           LEKSWASVMHQDHT FA+HRND IN + SQQRRQ  RPMWR+REHMAFLIRNLQFYIQVD
Sbjct: 545 LEKSWASVMHQDHTDFAQHRNDHINCTVSQQRRQRSRPMWRIREHMAFLIRNLQFYIQVD 604

Query: 607 VIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCW 666
           VIE+QWN+LQAHIQESHDFTELVGFHQEYLSALISQSFLD+GSVSRILD IMKLC+QFCW
Sbjct: 605 VIESQWNVLQAHIQESHDFTELVGFHQEYLSALISQSFLDIGSVSRILDSIMKLCLQFCW 664

Query: 667 AIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLRRFLLRLNFNSFFE 726
            IENQESS NT ELE ITEEFNKKSNSLYTILRS+RLAGSQRAPFLRRFLLRLNFNS+FE
Sbjct: 665 NIENQESSSNTSELERITEEFNKKSNSLYTILRSSRLAGSQRAPFLRRFLLRLNFNSYFE 724

Query: 727 MTARGVLNVVRQRPA 741
            TARGVLNVVR RP+
Sbjct: 725 ATARGVLNVVRSRPS 739

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564194|ref|XP_002523094.1| gamma-tubulin complex component, putative [Ricinus communis] gi|223537656|gb|EEF39279.1| gamma-tubulin complex component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224128466|ref|XP_002320339.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222861112|gb|EEE98654.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42565903|ref|NP_190944.2| gamma-tubulin complex component 4-like protein [Arabidopsis thaliana] gi|83302875|sp|Q9M350.2|GCP4_ARATH RecName: Full=Gamma-tubulin complex component 4 homolog gi|45773820|gb|AAS76714.1| At3g53760 [Arabidopsis thaliana] gi|46402452|gb|AAS92328.1| At3g53760 [Arabidopsis thaliana] gi|332645618|gb|AEE79139.1| gamma-tubulin complex component 4-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820114|ref|XP_002877940.1| tubulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297323778|gb|EFH54199.1| tubulin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356535143|ref|XP_003536108.1| PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356500339|ref|XP_003518990.1| PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449442557|ref|XP_004139048.1| PREDICTED: gamma-tubulin complex component 4 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|7629996|emb|CAB88338.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22095729|sp|Q9SC88.1|GCP4_MEDTR RecName: Full=Gamma-tubulin complex component 4 homolog gi|6562700|emb|CAB62542.1| 85p protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query748
TAIR|locus:2084430745 GCP4 "GAMMA-TUBULIN COMPLEX PR 0.971 0.975 0.747 2e-294
UNIPROTKB|E1BQM2665 TUBGCP4 "Uncharacterized prote 0.326 0.366 0.339 5.1e-55
UNIPROTKB|A0JNH5666 TUBGCP4 "Uncharacterized prote 0.326 0.366 0.320 6.1e-54
UNIPROTKB|E2RSA5668 TUBGCP4 "Uncharacterized prote 0.312 0.350 0.341 9.2e-54
UNIPROTKB|Q9UGJ1667 TUBGCP4 "Gamma-tubulin complex 0.327 0.367 0.324 2.6e-53
UNIPROTKB|F1SI61635 TUBGCP4 "Uncharacterized prote 0.312 0.368 0.333 7.2e-53
MGI|MGI:1196293667 Tubgcp4 "tubulin, gamma comple 0.244 0.274 0.376 3.7e-52
RGD|1306924619 Tubgcp4 "tubulin, gamma comple 0.307 0.371 0.333 7.2e-52
FB|FBgn0026431650 Grip75 "Grip75" [Drosophila me 0.244 0.281 0.281 5e-32
DICTYBASE|DDB_G0285849 1335 spc97 "spindle pole body compo 0.247 0.138 0.246 9.2e-25
TAIR|locus:2084430 GCP4 "GAMMA-TUBULIN COMPLEX PROTEIN 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2827 (1000.2 bits), Expect = 2.0e-294, P = 2.0e-294
 Identities = 552/738 (74%), Positives = 621/738 (84%)

Query:    11 GYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYY 70
             G+TGDLI+DERE + +     + D+P+S+EC+FKLAPDISFIEPSERDL+E++I LGFYY
Sbjct:    11 GFTGDLIVDEREQRKTLGLAFNSDSPLSDECTFKLAPDISFIEPSERDLIERLIKLGFYY 70

Query:    71 REIDRFASKARNLSWIRSANA-SPLERAAELSK-SKTERPSVYRRAIANGIVEILSVYRS 128
             RE+DRFA K+RNLSWIRS  +  PLERA ELSK S+ ++PSVYRRAIANGI EILSVYRS
Sbjct:    71 RELDRFAKKSRNLSWIRSVTSVHPLERADELSKQSREKKPSVYRRAIANGIGEILSVYRS 130

Query:   129 AVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCH 188
             AVL IEQKLL+ET PILATVT+GLNKFFVLFPPLYE++LEIERDDIRGGQLLN+L+KRCH
Sbjct:   131 AVLHIEQKLLAETTPILATVTEGLNKFFVLFPPLYEVILEIERDDIRGGQLLNVLNKRCH 190

Query:   189 CGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDV 248
             CG+PEL+ C+QRLLW+GHQVMYNQLA+WMVYGILQD HGEFFI+RQ+D D +H SS  +V
Sbjct:   191 CGVPELRTCLQRLLWNGHQVMYNQLAAWMVYGILQDPHGEFFIKRQDDGDLDHRSSQEEV 250

Query:   249 SEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQ 308
             SEKLAR S   TS+TDWH GFHI LDMLP+YI MR+ ESILFAGKA+RVLRNPS AF+FQ
Sbjct:   251 SEKLARTSVHETSLTDWHSGFHISLDMLPDYIPMRLGESILFAGKAIRVLRNPSPAFQFQ 310

Query:   309 D----QLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSE 364
                  Q   R SQ+I+G       + E  LD  L G ELLPQS+ADKIEAML+ LKE SE
Sbjct:   311 KDKSFQQTMRGSQRIRGFMHSDFPETETELDADLTGGELLPQSEADKIEAMLKDLKESSE 370

Query:   365 FHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQL 424
             FHKRSFEC VDS+RAIAASHLWQLVVVRA+LNGHLKALKDYFLLEKGDFFQCFLEESRQL
Sbjct:   371 FHKRSFECTVDSVRAIAASHLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQL 430

Query:   425 MRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAY 484
             MRLPPRQST E+DLMVPFQLAA KTI+EEDKYFSRVSLRMPSFG+TV+S   D++++K  
Sbjct:   431 MRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVS 490

Query:   485 ADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQ 544
               G +        SD S+DGWD IALEYSVDWP+QLFFTQEVLSKY KVFQYL+RLKRTQ
Sbjct:   491 LTGKANLT-----SDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQ 545

Query:   545 MELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQ 604
             MELEKSWASVMHQDH   A+HR D +N S SQQRRQ  RPMWRVREHMAFLIRNLQFYIQ
Sbjct:   546 MELEKSWASVMHQDHIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQ 605

Query:   605 VDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQF 664
             VDVIE+QW +LQ HI +S DFTELVGFHQEYLSALISQSFLD+GSVSRILD IMKLC+QF
Sbjct:   606 VDVIESQWKVLQTHIHDSQDFTELVGFHQEYLSALISQSFLDIGSVSRILDSIMKLCLQF 665

Query:   665 CWAIENQESSENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPXXXXXXXXXXXXXX 724
             CW IENQES+ NT ELE+I EEFNKKSNSLYTILRS++LAGSQRAP              
Sbjct:   666 CWNIENQESNPNTSELENIAEEFNKKSNSLYTILRSSKLAGSQRAPFLRRFLLRLNFNSF 725

Query:   725 XEMTARGVLNVVRQRPAI 742
              E TARGVLNVVRQRPA+
Sbjct:   726 YEATARGVLNVVRQRPAL 743
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0005815 "microtubule organizing center" evidence=IEA
GO:0015631 "tubulin binding" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0007020 "microtubule nucleation" evidence=IMP
GO:0040007 "growth" evidence=IMP
GO:0043622 "cortical microtubule organization" evidence=IMP
GO:0045298 "tubulin complex" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
UNIPROTKB|E1BQM2 TUBGCP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A0JNH5 TUBGCP4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSA5 TUBGCP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UGJ1 TUBGCP4 "Gamma-tubulin complex component 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SI61 TUBGCP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1196293 Tubgcp4 "tubulin, gamma complex associated protein 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306924 Tubgcp4 "tubulin, gamma complex associated protein 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0026431 Grip75 "Grip75" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285849 spc97 "spindle pole body component 97" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SC88GCP4_MEDTRNo assigned EC number0.74830.96790.9797N/Ano
Q9M350GCP4_ARATHNo assigned EC number0.76690.97190.9758yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028020001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (743 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025404001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa)
    ••••0.466

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query748
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 1e-112
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  349 bits (898), Expect = e-112
 Identities = 170/644 (26%), Positives = 256/644 (39%), Gaps = 119/644 (18%)

Query: 4   ELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDIS-FIEPSERDLLEK 62
           +LL ALLG        +                     SFK+AP+IS  + PS R LL +
Sbjct: 1   DLLFALLGLESLYFRYD-----------------KSSESFKIAPNISGLLSPSLRSLLNR 43

Query: 63  IITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEI 122
           I+ LG  YR +  F                      E   S +       +A+A  + EI
Sbjct: 44  ILELGTLYRRLREFI---------------------ESISSSSSLYGPVLQALAAALREI 82

Query: 123 LSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLLNL 182
           L+ Y   V  +E +LLS     L  +   L    +L   L E+V EI    ++GGQLL+ 
Sbjct: 83  LNEYLQLVAQLESELLSNGTLTLLQLLAELQPAILLLRLLAEIVEEILSKSLKGGQLLSS 142

Query: 183 LHKRC--HCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTE 240
           L++R     G P+L+  + RLL    Q     L+ W+++G L D +GEFFI+  E  +  
Sbjct: 143 LYERIASQTGDPDLRELLLRLLNAASQPYLQMLSRWLLHGELDDPYGEFFIKENESEEVL 202

Query: 241 HCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRN 300
                               S   W   + +  DMLP ++   +A  IL  GK++  LR 
Sbjct: 203 -----------------SDDSDEYWEERYTLREDMLPSFLPKELARKILEIGKSLNFLRE 245

Query: 301 PSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLK 360
              +           S                                    EA++  LK
Sbjct: 246 CCKSHPLAKDQSLALSL----------------------------------REALVSLLK 271

Query: 361 EPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEE 420
             S     + E  +DS    A+  L  L++   +L GHL+ALKDYFLL +GDF   FLE 
Sbjct: 272 LFSSLDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLES 331

Query: 421 SRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLK 480
               +  P    +  A   +  +     +  ++        L               L +
Sbjct: 332 LFDELDKPANSLSDHALQSLLQEALRSSSSDDDPASSDLDELE-----TKKSDSSETLNR 386

Query: 481 AKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRL 540
               +   S            L G D + L+Y V WPL L  T E L KY ++F++LLRL
Sbjct: 387 LDVSSLELSS----------GLSGLDALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRL 436

Query: 541 KRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQ 600
           KR +  L K W  +              R     +++     R +W +R  M   + +LQ
Sbjct: 437 KRAEYLLNKLWKELNK------------RRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQ 484

Query: 601 FYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSF 644
           +YIQVDVIE+ W  LQ  +Q++ D  EL+  H++YL +++S  F
Sbjct: 485 YYIQVDVIESNWQKLQEQLQKAKDLDELIAAHEDYLDSILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 748
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2000879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 100.0
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-100  Score=767.56  Aligned_cols=672  Identities=39%  Similarity=0.626  Sum_probs=557.4

Q ss_pred             ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCC-cCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 004500            1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDIS-FIEPSERDLLEKIITLGFYYREIDRFASK   79 (748)
Q Consensus         1 ml~dlL~aL~G~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~-~l~~s~~~ll~~i~~lg~~y~~l~~fv~~   79 (748)
                      ||||+|+||.|++|+.|.+..-                 ..+...+.++| +++||||+++++++.+|..|+.+.+|.+-
T Consensus         1 MiHeLLLAl~g~~g~~~~~~~R-----------------~~GLa~~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtsw   63 (679)
T KOG2065|consen    1 MIHELLLALRGHNGEQLGIKAR-----------------FNGLAETTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSW   63 (679)
T ss_pred             CHHHHHHHHhCCChhheeehhh-----------------ccccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999751                 11333445555 89999999999999999999999999754


Q ss_pred             hhccccccccCCCchhhhhhhh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhhhhhh
Q 004500           80 ARNLSWIRSANASPLERAAELS-KSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVL  158 (748)
Q Consensus        80 ~~~~~~i~s~~~~~~~~~~~~~-~~~~~~~g~~~~A~~~~l~~~L~~y~~~i~~lE~~~~~~~~~sL~~l~~~l~~~~~~  158 (748)
                            |++...+|..++++.+ ......+|.|.+|||.||...|++|+..|..||+.++.++.++|++++..|..++.+
T Consensus        64 ------IrsvTsH~~~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~L  137 (679)
T KOG2065|consen   64 ------IRSVTSHSSGRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPL  137 (679)
T ss_pred             ------HHHhccCcccccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhh
Confidence                  4443334444444333 233466899999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCC
Q 004500          159 FPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD  238 (748)
Q Consensus       159 l~~L~~lv~~i~~~~~~g~~lL~~L~~~~~~G~~~~~~~~~~Ll~~~~~p~~~~l~~Wi~~G~L~Dp~~EFFI~~~~~~~  238 (748)
                      ++.++++|.+|...+++||+||..||++ +||.|+++..+.++++.|..++++++..||.+|.|.||++||||......+
T Consensus       138 fp~~~~vi~eI~~~~irGcqlL~~l~k~-HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~  216 (679)
T KOG2065|consen  138 FPFMRNVITEIHVLNIRGCQLLHNLHKQ-HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDA  216 (679)
T ss_pred             hHHHHHHHHHHHhcccchhHHHHHHHHh-ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCC
Confidence            9999999999988999999999999998 699999999999999999999999999999999999999999999888777


Q ss_pred             cccCCCCccchHhhh--hhcc-CCCCccccccceeeecCCCCcccChhHHHHHHhhhhHHHHhhCCCccchhhhhhhhcc
Q 004500          239 TEHCSSHSDVSEKLA--RLST-DYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRS  315 (748)
Q Consensus       239 ~~~~~~~~~~~~~l~--~~~~-~~~~~~~W~~~y~l~~~~lP~Fl~~~~a~~Il~~GKsl~~Lr~~~~~~~~~~~~~~~g  315 (748)
                      .+..|..++..++|.  ++.. .-..-....-.|..+....|.|.+-..+.++|++|+...+.+.....           
T Consensus       217 ~d~ss~~ee~~e~L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~-----------  285 (679)
T KOG2065|consen  217 VDGSSFSEEATESLLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNV-----------  285 (679)
T ss_pred             CCcccCchhhhhhhhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccce-----------
Confidence            777766666665543  1110 00001112235566666788888878888999999988887754211           


Q ss_pred             cccccccccccccccccchhhhcccccCCCcchHHHHHHHHhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcH
Q 004500          316 SQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANL  395 (748)
Q Consensus       316 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~s~~L~~~l~~~~~L  395 (748)
                       +.+.-.+..++ .+|..++.+..+-.++++.+ ++|++++.+|++.+.|+...||..|++++..++.+||++++++.+|
T Consensus       286 -~~i~F~~~~~~-~~e~eld~dlt~G~ll~~~E-d~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e~DL  362 (679)
T KOG2065|consen  286 -KVINFKTDPLA-AKEAELDSDLTYGQLLSGRE-DEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNEVDL  362 (679)
T ss_pred             -eeeeccCCchh-hHHhhccccchhhhhcCCCh-HHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence             01110011111 11222222222334777554 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCccccccchHHHHHHhhhcccccccCCceEEEecCCCcccCCCc
Q 004500          396 NGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPH  475 (748)
Q Consensus       396 ~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~~L~~~l~~a~~~s~~~~d~~~~~l~~~~~~~~~~~~~~~  475 (748)
                      ..||++||+|||||+|||++.|++.+...|+.|++..+ +++++.+|+.|+..+..++|++++++++.++..|.++   +
T Consensus       363 ~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~t-E~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~---~  438 (679)
T KOG2065|consen  363 EGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERT-EKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSE---P  438 (679)
T ss_pred             HhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhc-ccccchhhhhhhhhccccccccccceEEEecccCCCC---c
Confidence            99999999999999999999999999999999999988 8999999999999999999999999999998776321   1


Q ss_pred             chhhhhhcccCCCCCCccCCCCCCCCcccccceeeeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004500          476 VDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVM  555 (748)
Q Consensus       476 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~L~y~v~wPL~lIlt~~~~~~Y~~iF~fLl~lk~~~~~L~~~w~~~~  555 (748)
                      .|....      ++|.+  ...+..+.+||+++.|.|+|+|||+++|||.++++||.||+||+++||.++.|+++|..+|
T Consensus       439 aD~~~~------~tGka--~ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm  510 (679)
T KOG2065|consen  439 ADTSDF------NTGKA--FLTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQM  510 (679)
T ss_pred             cchhhh------ccCcc--cccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111      12221  2233568899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhchhhhcccccccccchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 004500          556 HQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEY  635 (748)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VI~~~w~~~~~~l~~~~dld~l~~~H~~f  635 (748)
                      .+.+..     +.++.-+      +.+  .|++|+.|.+|++++|+|++.||||++|..++..++...||+.|..+|+.|
T Consensus       511 ~r~h~~-----s~q~~d~------~~I--~WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~f  577 (679)
T KOG2065|consen  511 WRAHSA-----SDQPPDN------KII--TWRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVF  577 (679)
T ss_pred             HHHHhh-----ccCCCCC------ccc--hHHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            888752     1111001      122  399999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcCC--CChhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcHHHH
Q 004500          636 LSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQESS--ENTPELEHITEEFNKKSNSLYTILRSTRLAGSQRAPFLR  713 (748)
Q Consensus       636 L~~i~~~cfL~~~~i~~~i~~il~l~~~F~~~~~~~~~~--~~~~~i~~~~~~F~~~~~~L~~~L~~~~~~~~~~~~~l~  713 (748)
                      |.+++.+|||..++++.++.+|+++|.+||+.+.+..++  ...++++++.+.|.++...|+++|.+  +.+++..+.|+
T Consensus       578 LsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~Q~~~P~d~~~~el~~l~e~F~~qs~sL~~iL~s--vk~~q~~~~L~  655 (679)
T KOG2065|consen  578 LSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMTQTKDPSDDLEDELDQLNESFGVQSASLIQILVS--VKSAQCLGPLS  655 (679)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCCCcccchHHHHHHHHHhhhhHHHHHHHHHH--ccccccccHHH
Confidence            999999999999999999999999999999887766544  46789999999999999999999999  88889999999


Q ss_pred             HHHHhhccchhhhcccccccccccC
Q 004500          714 RFLLRLNFNSFFEMTARGVLNVVRQ  738 (748)
Q Consensus       714 ~Ll~RLdfN~~y~~~~~~~~~~~~~  738 (748)
                      +|++|||||.||+. +||.+|.+++
T Consensus       656 qlLLRLdfN~~y~a-ArG~ln~~~q  679 (679)
T KOG2065|consen  656 QLLLRLDFNCWYSA-ARGSLNTSAQ  679 (679)
T ss_pred             HHHHHhchhHHHHh-cccccccccC
Confidence            99999999999997 8999998874

>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query748
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 7e-79
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score =  291 bits (746), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 203/682 (29%), Positives = 334/682 (48%), Gaps = 85/682 (12%)
Query: 38  SEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERA 97
           ++    +++ D  F+ PSE  +L ++  LG  Y     F  +      ++  +  P ++ 
Sbjct: 20  NKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTG--HVQQQDHHPSQQG 77
Query: 98  AELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFV 157
                 +     +Y RA   G+  +L  YR A+L +EQ+ L +    ++ V   L++F +
Sbjct: 78  ------QGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQL 131
Query: 158 LFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWM 217
           LFP +  +V +I+   I G Q+L  ++K    G+P +++ ++++L   H VMY QL++WM
Sbjct: 132 LFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWM 191
Query: 218 VYGILQDQHGEFFIRR---------QEDRDTEHCSSHSDVSEKL-----ARLSTDYTSVT 263
           ++G+L DQH EFFI++         Q + D E         ++L      RL  +   + 
Sbjct: 192 LHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLA 251
Query: 264 DWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVT 323
                F + +++LP YI +R+AE ILF G++V++  N       Q+  +TR         
Sbjct: 252 PSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFEN-------QNVNLTRKG------- 297
Query: 324 GRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAAS 383
              SI K                +  D   A L  LK+   F    FE  VD IR+  A 
Sbjct: 298 ---SILK----------------NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAE 338
Query: 384 HLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQ 443
           HLW+L+V  ++L G LK +KD++LL +G+ FQ F++ ++ +++ PP   T E D+ V FQ
Sbjct: 339 HLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVT-EHDVNVAFQ 397
Query: 444 LAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLD 503
            +A K + ++D     + L +   G      H D  +A+       G +  +   +    
Sbjct: 398 QSAHKVLLDDDNLLPLLHLTIEYHG----KEHKDATQAR------EGPSRETSPREAPAS 447
Query: 504 GWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFA 563
           GW  + L Y V WPL + FT  VL KY  VF+YLL ++R Q EL+  WA  M + H    
Sbjct: 448 GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL--- 504
Query: 564 KHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESH 623
                        +  QT    WR+R HMAFL+ NLQ+Y+QVDV+E+Q++ L   I  + 
Sbjct: 505 -------------KSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTR 551
Query: 624 DFTELVGFHQEYLSALISQSFLDLGSVSRILDGIMKLCIQFCWAIENQES---SENTPEL 680
           DF  +   H  +LS L++QSF+ L  V   L+ I+ LC  FC  +             +L
Sbjct: 552 DFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQL 611
Query: 681 EHITEEFNKKSNSLYTILRSTR 702
             + + F+++S+ L+ IL S R
Sbjct: 612 SILVKGFSRQSSLLFKILSSVR 633

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query748
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 1e-116
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  364 bits (935), Expect = e-116
 Identities = 212/756 (28%), Positives = 349/756 (46%), Gaps = 106/756 (14%)

Query: 1   MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLL 60
           M+HELLLAL GY G +                     ++    +++ D  F+ PSE  +L
Sbjct: 1   MIHELLLALSGYPGSIF------------------TWNKRSGLQVSQDFPFLHPSETSVL 42

Query: 61  EKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIV 120
            ++  LG  Y     F  +       +  + S         + +     +Y RA   G+ 
Sbjct: 43  NRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPS--------QQGQGGLHGIYLRAFCTGLD 94

Query: 121 EILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPPLYELVLEIERDDIRGGQLL 180
            +L  YR A+L +EQ+ L +    ++ V   L++F +LFP +  +V +I+   I G Q+L
Sbjct: 95  SVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQIL 154

Query: 181 NLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTE 240
             ++K    G+P +++ ++++L   H VMY QL++WM++G+L DQH EFFI++       
Sbjct: 155 ETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNV 214

Query: 241 HCSSHSDVSEKL--------------ARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAE 286
                 D  +                 RL  +   +      F + +++LP YI +R+AE
Sbjct: 215 SAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAE 274

Query: 287 SILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQ 346
            ILF G++V++  N +                                 + L  +  + +
Sbjct: 275 KILFVGESVQMFENQN---------------------------------VNLTRKGSILK 301

Query: 347 SDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGHLKALKDYF 406
           +  D   A L  LK+   F    FE  VD IR+  A HLW+L+V  ++L G LK +KD++
Sbjct: 302 NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFY 361

Query: 407 LLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPS 466
           LL +G+ FQ F++ ++ +++ PP  +  E D+ V FQ +A K + ++D     + L +  
Sbjct: 362 LLGRGELFQAFIDTAQHMLKTPPT-AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEY 420

Query: 467 FGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEV 526
            G   K                 G +  +   +    GW  + L Y V WPL + FT  V
Sbjct: 421 HGKEHKDA----------TQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAV 470

Query: 527 LSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMW 586
           L KY  VF+YLL ++R Q EL+  WA  M + H                 +  QT    W
Sbjct: 471 LEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL----------------KSNQTDAIKW 514

Query: 587 RVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQEYLSALISQSFLD 646
           R+R HMAFL+ NLQ+Y+QVDV+E+Q++ L   I  + DF  +   H  +LS L++QSF+ 
Sbjct: 515 RLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFIL 574

Query: 647 LGSVSRILDGIMKLCIQFCWAIE---NQESSENTPELEHITEEFNKKSNSLYTILRSTRL 703
           L  V   L+ I+ LC  FC  +             +L  + + F+++S+ L+ IL S  +
Sbjct: 575 LKPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKILSS--V 632

Query: 704 AGSQRAPFLRRFLLRLNFNSFFEMTARGVLNVVRQR 739
              Q    L + LLRL++N ++   A G L      
Sbjct: 633 RNHQINSDLAQLLLRLDYNKYY-TQAGGTLGSFGMC 667
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00