Citrus Sinensis ID: 004519

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------
MAMATKKFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEEAARNISNMPASRSSRTTVSEAVVPVVAPADAVVDMSNIDHIVDRIGLDISFDPASALPAGDDQHRKAAQQWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDESTQELVTVTPPPTRRPPGRPKMKQPESAEIIKRSLQCSKCKGLGHNKKTCKDS
ccccccEEEEEEEEccEEEEcccccEEEEcccEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEccccEEEEEcccHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHccEEEEEEEEccEEEEEEEEccccccEEEEEEEccccEEEEEEEcccEEEccccEEcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHcEEEcHHHHHHHHHHHHHHHcccHHHHccccHHHHHHccccccccEEEEcccccccccEEEEEEcccccccccccccEEEEccccccccccccEEEEEEEcccccccEEEEEEEcccccccHHHHHHHccccccccccEEEEEcccccccccccccccccccccHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHcccccHHHHHHHHHccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHcccHHHHHHHcccccccccccccHHHHHHHHHHHHccEEEEEEcccccEEEEccEEEEEEEEEcEEEcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccEEEEEEEcccEEEEccccccEEcccccccEcccccccHHHHHHHHHHHccccccEEEEEEEEEccccEEEEccccHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEccEcccHHHHHHHHHHHHHHcccEEEEEEccccEEEEEEEcccccEEEEEEEcccccEEEEEEEccccEcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHEEEHHHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccEEEEccccEEEEEEccEEEEEEcccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHcccccccccccccccccccccEcccccccccccccccccEccccccccEEEEEcccccccccccccccc
MAMATKKFIAICQsggefvtnkdgslsynggeayaidideetefsgfKSEVAEMFNcsadtmsikyflpgnkktlisISKDKDFKRMLNFLGDTATVDVFIQSEEAArnisnmpasrssrttvseavvpvvapadavvdmsnIDHIVDRigldisfdpasalpagddQHRKAAQQWENTITGVDQRFSSFSEFREALHKYSIAHGFAyrykkndshrvtvkckcqgcpwriyasrLSTTQLVCIKKmnskhtcegasvkagyratrGWVGNIIKEklkaspnykpkdiadDIKREYGIQLNYSQAWRAKEIAREQLqgsykdsytlLPFFCEkiketnpgsvvtfttkedssfhrLFVSFHASIsgfqqgcrpllfldttplnskyqGTLLtatsadgddgifPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYaaayapkfegfqcsiesikgispdaydwvtqsepehwantyfpgarydhmtsnfgQQFYSWVSeahelpitHMVDVLRGKMMETIYTRRVEsnqwltkltpskedkLQKETAIARSFQVLHLQsstfevrgesadivdvdrwdctcktwhltglpcchaIAVLEwigrspydycskyfttesyrmtysesiqpvpnvdrpildestqelvtvtppptrrppgrpkmkqpesAEIIKRSLqcskckglghnkktckds
MAMATKKFIAICqsggefvtnkdgslSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEEaarnisnmpasrssrttvsEAVVPVVAPADAVVDMSNIDHIVDRIGLDISFDPASALPAGDDQHRKAAQQWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMnskhtcegasvkagyratrgwVGNIIkeklkaspnykpkDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKiketnpgsVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRrvesnqwltkltpskedklQKETAIARSFQVlhlqsstfevrgesadivdVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDEstqelvtvtppptrrppgrpkmkqpeSAEIIKrslqcskckglghnkktckds
MAMATKKFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEEAARNISNMPASRSSRTTVSEavvpvvapadavvdMSNIDHIVDRIGLDISFDPASALPAGDDQHRKAAQQWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDESTQELvtvtppptrrppgrpKMKQPESAEIIKRSLQCSKCKGLGHNKKTCKDS
******KFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQ***********************AVVPVVAPADAVVDMSNIDHIVDRIGLDISFDP****************QWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKL***********TAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSE********************************************************************
****TKKFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEEAARNISNMPASRSS*************PADAVVDMSNIDHIVDRIGL*********************QQWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDESTQELVT********************************CKGLG*****C***
MAMATKKFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEEAARNIS*************EAVVPVVAPADAVVDMSNIDHIVDRIGLDISFDPASAL**********AQQWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDESTQELVTVTPP*****************EIIKRSLQCSKCKGL**********
***ATKKFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEE***************************************************************HRKAAQQWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDESTQELVTVTPPPT********MK******IIKRSLQCSKCKG***********
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MAMATKKFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEEAARNISNMPASRSSRTTVSEAVVPVVAPADAVVDMSNIDHIVDRIGLDISFDPASALPAGDDQHRKAAQQWENTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDESTQELVTVTPPPTRRPPGRPKMKQPESAEIIKRSLQCSKCKGLGHNKKTCKDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query747 2.2.26 [Sep-21-2011]
Q9SSQ4703 Protein FAR1-RELATED SEQU no no 0.436 0.463 0.203 1e-06
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function desciption
 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 152/384 (39%), Gaps = 58/384 (15%)

Query: 322 DSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLF-VSFHASISGFQQGCRPLLFLDTT 380
           DS  +  +FC +++ TNP         ++     +F     + +S    G   ++F+D++
Sbjct: 247 DSAAIYNYFC-RMQLTNPNFFYLMDVNDEGQLRNVFWADAFSKVSCSYFG--DVIFIDSS 303

Query: 381 PLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIAD 440
            ++ K++  L+T T  +       ++   +  ET +++HW L+   S +  S Q T + D
Sbjct: 304 YISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRSPQ-TIVTD 362

Query: 441 FQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFSHEA-RRFMINDLYAAAYAPKFE 499
               L  ++++VF   +  + L H+  K+   + G  +++A R+     +Y      +FE
Sbjct: 363 RCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGGLHNYDAVRKAFTKAVYETLKVVEFE 422

Query: 500 ---GFQCS----IES--IKGISPDAYDWVTQSEPEHWANTYFPGARYDHMTSNFGQQFYS 550
              GF       IE+  ++ +  +   W     P +  +T+F G    H        F  
Sbjct: 423 AAWGFMVHNFGVIENEWLRSLYEERAKWA----PVYLKDTFFAGIAAAHPGETLKPFFER 478

Query: 551 WVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQKETAIAR----- 605
           +V +  + P+   +D     + +      +   +  T  T   + K   ET ++R     
Sbjct: 479 YVHK--QTPLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTKCSFETQLSRIYTRD 536

Query: 606 ---SFQV-------------LHLQSSTF------EVRGESA--DIVD--------VDRWD 633
               FQ+             +H+            VRGES+  +I D        V    
Sbjct: 537 MFKKFQIEVEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVR 596

Query: 634 CTCKTWHLTGLPCCHAIAVLEWIG 657
           C C  ++  G  C HA+ VL + G
Sbjct: 597 CICSCFNFYGYLCRHALCVLNFNG 620
Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query747
225432189746 PREDICTED: uncharacterized protein LOC10 0.991 0.993 0.788 0.0
356548025748 PREDICTED: uncharacterized protein LOC10 0.994 0.993 0.78 0.0
356565507748 PREDICTED: uncharacterized protein LOC10 0.997 0.995 0.778 0.0
147865779 1147 hypothetical protein VITISV_020810 [Viti 0.974 0.634 0.766 0.0
449485027844 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.989 0.875 0.797 0.0
449441646 850 PREDICTED: uncharacterized protein LOC10 0.989 0.869 0.797 0.0
225450448768 PREDICTED: uncharacterized protein LOC10 0.995 0.968 0.664 0.0
18087533749 AT3g06940/F17A9_9 [Arabidopsis thaliana] 0.986 0.983 0.660 0.0
10177186757 mutator-like transposase-like protein [A 0.990 0.977 0.678 0.0
449456080770 PREDICTED: uncharacterized protein LOC10 0.991 0.962 0.657 0.0
>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1263 bits (3268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/748 (78%), Positives = 659/748 (88%), Gaps = 7/748 (0%)

Query: 3   MATKKFIAICQSGGEFVTNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTM 62
           MA KK IAICQSGGEFVTNKDGSLSYNGGEAYAID+D++T+ S FK EVAEMFNCS DTM
Sbjct: 1   MAAKKVIAICQSGGEFVTNKDGSLSYNGGEAYAIDVDQQTQLSDFKLEVAEMFNCSIDTM 60

Query: 63  SIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQSEEAA-RNISNMPASRSSRT 121
           SIKYFLP NKKTLI+ISKDKD KRM+ FLGD+ TVD+FI +EEA  RN S MPASRSSRT
Sbjct: 61  SIKYFLPDNKKTLITISKDKDLKRMVKFLGDSVTVDIFIMTEEAVPRNQSIMPASRSSRT 120

Query: 122 TVSEAVVPVVAPADAVVDMSNIDHIVDRIGLDI---SFDPASALPAGDDQHRKAAQQWEN 178
           TVSEAVVP VAP DAVVDM+   H +D++ +D+   +    + + + DD+H+KAAQQWEN
Sbjct: 121 TVSEAVVPAVAPVDAVVDMT---HAIDKVDMDMANYTHSDNAPVISNDDKHQKAAQQWEN 177

Query: 179 TITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLST 238
           TITGVDQRF+SF+EFREALHKYSIAHGFAY+YKKNDSHRVTVKCK QGCPWRIYASRLST
Sbjct: 178 TITGVDQRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLST 237

Query: 239 TQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGI 298
           TQL+CIKKM++ HTCEGA VKAGYRATRGWVG IIKEKLK SPNYKPKDIADDIKREYGI
Sbjct: 238 TQLICIKKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGI 297

Query: 299 QLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFV 358
           QLNYSQAWRAKEIAREQLQGSYK++Y+ LPFFCEKIKETNPGS  TF TKEDSSFHRLF+
Sbjct: 298 QLNYSQAWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETKEDSSFHRLFI 357

Query: 359 SFHASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNW 418
           SFHA+ISGFQQGCRPLLFLD+TPLNSKYQG LLTAT+ADGDDG+FPVAFAVVDAET+DNW
Sbjct: 358 SFHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNW 417

Query: 419 HWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNCYHSYCLRHLAEKLNRDIKGQFS 478
            WFL ELKSAVST++ ITF+ADFQ GL KSLAE+FDN YHSYCLR+L EKLN+D+KGQFS
Sbjct: 418 SWFLLELKSAVSTARPITFVADFQKGLKKSLAEIFDNGYHSYCLRYLTEKLNKDLKGQFS 477

Query: 479 HEARRFMINDLYAAAYAPKFEGFQCSIESIKGISPDAYDWVTQSEPEHWANTYFPGARYD 538
           HEARRFMIND YAAAYA + E FQ   E+IKGISP+AY+WV QSEP+HW+N +F GARY 
Sbjct: 478 HEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGARYS 537

Query: 539 HMTSNFGQQFYSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTKLTPSKEDKLQ 598
           HM SNFGQ FY+WVSEA++LPIT MVDVLRGKMME IY RRV+S+QW+TKLTPSKE+KL 
Sbjct: 538 HMASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWITKLTPSKEEKLL 597

Query: 599 KETAIARSFQVLHLQSSTFEVRGESADIVDVDRWDCTCKTWHLTGLPCCHAIAVLEWIGR 658
           K+T+ ARS QVL    STFEVRGES DIVD+D WDC+CK W L+GLPCCHAIAV EWIGR
Sbjct: 598 KDTSTARSLQVLLSHGSTFEVRGESIDIVDIDHWDCSCKDWQLSGLPCCHAIAVFEWIGR 657

Query: 659 SPYDYCSKYFTTESYRMTYSESIQPVPNVDRPILDESTQELVTVTPPPTRRPPGRPKMKQ 718
           +PYDYCS+YFT ESYR+TY+ESI PVPNVDRP+  ESTQ  + VTPPPT+RPPGRPKMKQ
Sbjct: 658 NPYDYCSRYFTVESYRLTYAESIHPVPNVDRPVKTESTQVGIIVTPPPTKRPPGRPKMKQ 717

Query: 719 PESAEIIKRSLQCSKCKGLGHNKKTCKD 746
             S E IKR LQCSKCKGLGHNKKTCKD
Sbjct: 718 AGSVETIKRQLQCSKCKGLGHNKKTCKD 745

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356548025|ref|XP_003542404.1| PREDICTED: uncharacterized protein LOC100776940 [Glycine max] Back     alignment and taxonomy information
>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max] Back     alignment and taxonomy information
>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449485027|ref|XP_004157051.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228329 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441646|ref|XP_004138593.1| PREDICTED: uncharacterized protein LOC101203713 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18087533|gb|AAL58900.1|AF462806_1 AT3g06940/F17A9_9 [Arabidopsis thaliana] gi|17380908|gb|AAL36266.1| putative mudrA protein [Arabidopsis thaliana] gi|20855902|gb|AAM26637.1| AT3g06940/F17A9_9 [Arabidopsis thaliana] gi|28393919|gb|AAO42367.1| putative mudrA protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10177186|dbj|BAB10320.1| mutator-like transposase-like protein [Arabidopsis thaliana] gi|22531088|gb|AAM97048.1| unknown protein [Arabidopsis thaliana] gi|23197938|gb|AAN15496.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449456080|ref|XP_004145778.1| PREDICTED: uncharacterized protein LOC101203656 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query747
TAIR|locus:2014230719 AT1G64260 "AT1G64260" [Arabido 0.647 0.673 0.254 1.6e-35
TAIR|locus:2197122785 AT1G49920 "AT1G49920" [Arabido 0.460 0.438 0.263 1.4e-34
TAIR|locus:1006230722750 AT1G64255 [Arabidopsis thalian 0.597 0.594 0.267 4.4e-30
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.369 0.392 0.195 2.7e-07
TAIR|locus:2121060 788 FRS5 "FAR1-related sequence 5" 0.357 0.338 0.190 0.00017
TAIR|locus:2014639 732 FRS4 "FAR1-related sequence 4" 0.394 0.403 0.198 0.00026
TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 411 (149.7 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 133/523 (25%), Positives = 233/523 (44%)

Query:   187 FSSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKCQGCPWRIYASRLSTTQLVCIKK 246
             F    E ++A+  + I        ++ +    T +C    C W + A+R+    LV I K
Sbjct:   191 FKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITK 250

Query:   247 MNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREYGIQLNYSQAW 306
                 HTC        + +   +  + I+  ++  P     ++    K + G +L  S+  
Sbjct:   251 YTGPHTCSH-EYPNDFESE--FAADEIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMR 307

Query:   307 RAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVT-----FTTKEDSSFHRLFVSFH 361
               K    +++ G    S+ ++P        +N G +V      F   + +SF  +F SF 
Sbjct:   308 DGKLEVIKRVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLFPNPDFASFRGVFWSFS 366

Query:   362 ASISGFQQGCRPLLFLDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWF 421
              SI GFQ  CRPL+ +DT  LN KYQ  L+ A+  D  +  FP+AFAV    + D+W WF
Sbjct:   367 QSIEGFQH-CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWF 425

Query:   422 LQELKSAVSTSQQITFIA----DFQNGLNKSLAEVFDN--CYHSYCLRHLAEKLNRDIKG 475
               +++  V+  + +  I+    D    +N+    ++     +H +CL HL        + 
Sbjct:   426 FTKIREKVTQRKDLCLISSPLRDIVAVVNEP-GSLWQEPWAHHKFCLNHL--------RS 476

Query:   476 QFSHEARRFMINDLYAAAYAP-KFEGFQCSIESIKGISPDAYDWVTQSEPEH-WANTYFP 533
             QF    R + +  L   A +  + E F   +  IK  +P+A+ W+ Q  P H WA  +  
Sbjct:   477 QFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQI-PRHKWALAHDS 535

Query:   534 GARYDHMTSNFGQQF-----YSWVSEAHELPITHMVDVLRGKMMETIYTRRVESNQWLTK 588
             G RY  +  +    F     + + + A    +  M D LR    +++ +     N+ +  
Sbjct:   536 GLRYGIIEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVY 595

Query:   589 LTPSKEDKLQKETAIARSFQVLHLQSSTFEVRGESAD----IVDVDRWDCTCKTWHLTGL 644
               P   DKL++    +  + +  L+  +F+V  ES++    IV ++   CTC+ +     
Sbjct:   596 TEPFM-DKLEEFMTDSIPYVITQLERDSFKV-SESSEKEEWIVQLNVSTCTCRKFQSYKF 653

Query:   645 PCCHAIAVLEWIGRSPYDYCSKYFTTESYRMTYSESIQPVPNV 687
             PC HA+AV E +  +P  Y  + +T E Y  TY+ +  PVP+V
Sbjct:   654 PCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDV 696
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT5G48965
transposable element gene; Mutator-like transposase family, has a 3.7e-47 P-value blast match to GB-AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays) (861 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query747
cd0641097 cd06410, PB1_UP2, Uncharacterized protein 2 1e-25
pfam1055188 pfam10551, MULE, MULE transposase domain 3e-22
pfam0310867 pfam03108, DBD_Tnp_Mut, MuDR family transposase 5e-20
smart0066681 smart00666, PB1, PB1 domain 1e-09
cd0599281 cd05992, PB1, The PB1 domain is a modular domain m 3e-07
pfam0056484 pfam00564, PB1, PB1 domain 5e-07
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 6e-07
PLN03097 846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 1e-05
pfam0443438 pfam04434, SWIM, SWIM zinc finger 3e-05
pfam00872381 pfam00872, Transposase_mut, Transposase, Mutator f 9e-04
>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2 Back     alignment and domain information 
 Score =  101 bits (253), Expect = 1e-25
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 11  ICQSGGEFV-TNKDGSLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLP 69
           +C  GG  +    DG L Y GGE   + +D    F    S+++E+F      +++KY LP
Sbjct: 1   LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLP 59

Query: 70  GNKKT-LISISKDKDFKRMLNF----LGDTATVDVFI 101
                 LIS+S D+D K M+       G +A + VF+
Sbjct: 60  DEDLDALISVSNDEDLKNMMEEYDRLSGGSARLRVFL 96

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase Back     alignment and domain information
>gnl|CDD|214770 smart00666, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information
>gnl|CDD|216166 pfam00872, Transposase_mut, Transposase, Mutator family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 747
PLN03097 846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
cd0641097 PB1_UP2 Uncharacterized protein 2. The PB1 domain 99.9
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.86
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.84
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 99.68
COG3328379 Transposase and inactivated derivatives [DNA repli 99.58
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.88
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 98.75
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 98.56
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 98.48
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 98.08
cd0599281 PB1 The PB1 domain is a modular domain mediating s 97.98
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 97.89
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 97.85
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 97.34
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 97.28
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 97.03
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 96.97
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 96.95
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 96.85
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 96.78
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 96.56
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 96.42
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 95.94
cd0640579 PB1_Mekk2_3 The PB1 domain is present in the two m 95.56
PF0009818 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi 95.46
cd0641178 PB1_p51 The PB1 domain is present in the p51 prote 95.26
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 94.77
PF1528840 zf-CCHC_6: Zinc knuckle 94.61
PF13610140 DDE_Tnp_IS240: DDE domain 94.09
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 93.96
PF04684496 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact 93.77
PF03050271 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: 93.75
PHA02517277 putative transposase OrfB; Reviewed 93.48
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 93.0
cd0639591 PB1_Map2k5 PB1 domain is essential part of the mit 90.28
PF1369632 zf-CCHC_2: Zinc knuckle 88.66
COG3316215 Transposase and inactivated derivatives [DNA repli 88.4
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 87.77
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 86.69
smart0077459 WRKY DNA binding domain. The WRKY domain is a DNA 85.89
PF1356577 HTH_32: Homeodomain-like domain 83.37
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 81.78
PF1439249 zf-CCHC_4: Zinc knuckle 81.77
smart0034326 ZnF_C2HC zinc finger. 80.12
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.9e-71  Score=628.06  Aligned_cols=475  Identities=17%  Similarity=0.234  Sum_probs=375.3

Q ss_pred             CcccccCceeCCHHHHHHHHHHHHHhcCeeEEEeecCCe-------EEEEEeec--------------------------
Q 004519          178 NTITGVDQRFSSFSEFREALHKYSIAHGFAYRYKKNDSH-------RVTVKCKC--------------------------  224 (747)
Q Consensus       178 ~~~~~vG~~F~s~~e~~~ai~~yai~~~f~~~~~rs~~~-------r~~~~C~~--------------------------  224 (747)
                      +..|.+||+|+|.+|++++|+.||...||++|+.++.++       ..+++|.+                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            356899999999999999999999999999998644321       23566653                          


Q ss_pred             --------CCCCeEEEEEEcCCcceEEEEecCCcccccCccccccccccchhHHHHHHHHhhhCCCCChHHHHHHHHHHh
Q 004519          225 --------QGCPWRIYASRLSTTQLVCIKKMNSKHTCEGASVKAGYRATRGWVGNIIKEKLKASPNYKPKDIADDIKREY  296 (747)
Q Consensus       225 --------~gC~w~i~a~~~~~~~~~~V~~~~~~Htc~~~~~~~~~~~s~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~  296 (747)
                              +||+++|++.+. ..+.|.|+.++.+|||++.........+++....... .+....++.      .++.+.
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~-~~~~~~~v~------~~~~d~  222 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMAR-QFAEYKNVV------GLKNDS  222 (846)
T ss_pred             cccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHh-hhhcccccc------ccchhh
Confidence                    479999999885 4468999999999999987432210011111100000 000000000      000000


Q ss_pred             CCccCHHHHHHHHHHHHHHHhcCHHHHhccHHHHHHHHHHhCCCCEEEEEecCCCceeEEEeehhchHHHHhhcCccEEE
Q 004519          297 GIQLNYSQAWRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVVTFTTKEDSSFHRLFVSFHASISGFQQGCRPLLF  376 (747)
Q Consensus       297 g~~~~~~~~~r~k~~~~~~~~g~~~~~~~~L~~~~~~l~~~npg~~~~~~~~~~~~f~~lf~~~~~~~~~f~~~~~~vl~  376 (747)
                         .++  .-+.+.+   .+.   ....+.|..|+.++++.||+|+|.+++|++++++++||+++.|+..|.+ |++||.
T Consensus       223 ---~~~--~~~~r~~---~~~---~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~-FGDvV~  290 (846)
T PLN03097        223 ---KSS--FDKGRNL---GLE---AGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGN-FSDVVS  290 (846)
T ss_pred             ---cch--hhHHHhh---hcc---cchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHh-cCCEEE
Confidence               011  1111111   111   2345678999999999999999999999999999999999999999998 999999


Q ss_pred             EeccccCCcccceEEEEEEecCCCCeEEEEEEEeecCCcccHHHHHHHHHhhcCCCCcEEEEecCcchhHHHHhhhccCc
Q 004519          377 LDTTPLNSKYQGTLLTATSADGDDGIFPVAFAVVDAETEDNWHWFLQELKSAVSTSQQITFIADFQNGLNKSLAEVFDNC  456 (747)
Q Consensus       377 iD~t~~~~~y~~~l~~a~g~d~~~~~~pla~a~v~~E~~e~~~wfl~~l~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a  456 (747)
                      +|+||++|+|++||+.++|+|+|++++++|+||+.+|+.++|.|+|++|+++|++..|.+||||++.+|.+||++|||++
T Consensus       291 fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t  370 (846)
T PLN03097        291 FDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNA  370 (846)
T ss_pred             EeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHhhhcccccHHHHHHHHHHHHHHhcC-CChhhHHHHHHH-HhccChhHHHHHhhc--CCCCcccccc
Q 004519          457 YHSYCLRHLAEKLNRDIKGQFSHEARRFMINDLYAAAYA-PKFEGFQCSIES-IKGISPDAYDWVTQS--EPEHWANTYF  532 (747)
Q Consensus       457 ~h~~C~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~ef~~~~~~-l~~~~~~~~~~l~~~--~~~~Wa~a~~  532 (747)
                      .|++|+|||++|+.+++...+..  .+.+...|..+++. .+++||+..|.. |.+++.+..+||..+  .+++|+++|+
T Consensus       371 ~Hr~C~wHI~~~~~e~L~~~~~~--~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~  448 (846)
T PLN03097        371 HHCFFLWHILGKVSENLGQVIKQ--HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYM  448 (846)
T ss_pred             eehhhHHHHHHHHHHHhhHHhhh--hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHh
Confidence            99999999999999999876532  34788899999886 699999999966 567789999999999  6999999999


Q ss_pred             CCCccccc-ccchhhhhhhhhhhh--ccCChhHHHHHHHHHHHHHHHHH-----------------HHhhhhcccCCCch
Q 004519          533 PGARYDHM-TSNFGQQFYSWVSEA--HELPITHMVDVLRGKMMETIYTR-----------------RVESNQWLTKLTPS  592 (747)
Q Consensus       533 ~~~~~~~~-ttN~~Es~n~~lk~~--r~~~i~~~l~~i~~~~~~~~~~~-----------------~~~~~~~~~~~tp~  592 (747)
                      ++.+++.| ||+++||+|+++++.  +..+|..|++.+-.-+-.+..+.                 ...+++.+..|||.
T Consensus       449 k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~  528 (846)
T PLN03097        449 RDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHA  528 (846)
T ss_pred             cccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHH
Confidence            99887655 779999999999984  77888888876543322222111                 12345668899999


Q ss_pred             HHHHHHHHHhhccceEEEEe----CCceEEEEc---ceeEEEeC----cCceeecCCcccCCCCcchHHHHHHHhcC--C
Q 004519          593 KEDKLQKETAIARSFQVLHL----QSSTFEVRG---ESADIVDV----DRWDCTCKTWHLTGLPCCHAIAVLEWIGR--S  659 (747)
Q Consensus       593 ~~~kl~~~~~~a~~~~v~~~----~~~~f~V~~---~~~~~V~l----~~~~CtC~~~~~~giPC~Halav~~~~~~--~  659 (747)
                      +|++||+|+..+..|.+...    ...+|.|.+   .+.|.|..    ...+|+|++|+..||||+|||.||...++  .
T Consensus       529 iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~I  608 (846)
T PLN03097        529 VFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAI  608 (846)
T ss_pred             HHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccC
Confidence            99999999999988877643    224688865   34566632    47899999999999999999999999985  5


Q ss_pred             cccccccchhHHHHH
Q 004519          660 PYDYCSKYFTTESYR  674 (747)
Q Consensus       660 p~~yi~~~~t~~~~~  674 (747)
                      |+.||.+|||+++-.
T Consensus       609 P~~YILkRWTKdAK~  623 (846)
T PLN03097        609 PSQYILKRWTKDAKS  623 (846)
T ss_pred             chhhhhhhchhhhhh
Confidence            999999999998753

>cd06410 PB1_UP2 Uncharacterized protein 2 Back     alignment and domain information
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development Back     alignment and domain information
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF15288 zf-CCHC_6: Zinc knuckle Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication Back     alignment and domain information
>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>PHA02517 putative transposase OrfB; Reviewed Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development Back     alignment and domain information
>PF13696 zf-CCHC_2: Zinc knuckle Back     alignment and domain information
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>smart00774 WRKY DNA binding domain Back     alignment and domain information
>PF13565 HTH_32: Homeodomain-like domain Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information
>PF14392 zf-CCHC_4: Zinc knuckle Back     alignment and domain information
>smart00343 ZnF_C2HC zinc finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query747
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 96.76
d2c60a180 Mitogen-activated protein kinase kinase kinase 3, 93.77
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 93.62
d2nptb182 Mitogen-activated protein kinase kinase kinase 2, 93.06
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 91.02
d1wmha_83 Protein kinase C, iota type {Human (Homo sapiens) 88.55
d1oeya_82 Neutrophil cytosol factor 2 (p67phox component of 88.48
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0024  Score=36.93  Aligned_cols=61  Identities=15%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             EECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf             73583368991599884458999998805999814999980499876146307077999996305
Q 004519           28 YNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLG   92 (747)
Q Consensus        28 Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~   92 (747)
                      +-+++++.+.+..+++|.+|..+|...|+.  +++.+||.-.  +.+++.+.+|+||..+++...
T Consensus        18 ~~~~D~~~~~l~~~it~~dL~~kI~~rf~~--~~~~lkY~De--dgd~v~i~sD~Dl~~ai~~~~   78 (85)
T d1ip9a_          18 YYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF--DGSGEEIKTDSQVSNIIQAKL   78 (85)
T ss_dssp             CBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS--SSCCSCCCSHHHHHHHHHTTC
T ss_pred             EECCCEEEEEECCCCCHHHHHHHHHHHHCC--CCEEEEEECC--CCCEEEEECHHHHHHHHHHCC
T ss_conf             989929999937998899999999998587--8368999968--999789837899999997228
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure