Citrus Sinensis ID: 004522

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------

MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWIR

ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccHHHccccccccccccccccccccccccEEEccccccccEEccccccccccccccEEEEEEcccccccccccEEEEEEEEEEccccEEEEEcccHHccccHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccHHHHHEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHccEEEEccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHcccccccHHccccccccccccccccccccHHEccccccHHccccccc

maskaspsaspnrseplksssltktengtltRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLErrnnqtinthGSVDLLTKRQREALgvqngidvssgdrdshisqedgyastavygssnptkniirpiklndnkrlppyttwifldrnqrmtedqsvMSRRRIyydqnggealicsdseeevieeeekkdfvdseDYILRMTIkevglsdatLESLAQcfsrspsevKARYEILSKeesavggsnngndehtmNNFLVKDLEAALDSFDNLFCRRCLvfdcrlhgcsqdlvfpaekqplwyhldegnvpcgphcyrsvlksernatacsplngdikekfisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdsevgqrqdtafthhsspsksklvgkvgickrkSKRVAERALVCKQKKQKkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHvrvplgssqeivsnppaistndslrkdEFVAENMckqelsdeKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTcsenklfcqaGDAATSLLEgyskfdfngttgnnevRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRIterkdqpcrqynpcgcqtacgkqcpcllngtccekycgcpkscknrfrgchcaksqcrsrqcpcfaadrecdpdvcrncwir

maskaspsaspnrseplksssltktengtltRKEILSVIDCLKNQVAADHfvsvqrrveknrqkligvtnhlyrlslerrnnqtinthgsvDLLTKRQREALGVqngidvssgdrdsHISQEDGyastavygssnptkniirpiklndnkrlppyttwifldrnqrmtedqsvmsRRRIYYDQNGGEALICSDSEEEVIEeeekkdfvdsedYILRMTIKEVGLSDATLESLaqcfsrspseVKARYEILSKeesavggsnngndEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdseVGQRQDTafthhsspsksklvgkvgickrkskrvaeralvckqkkqkkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHVRVPLgssqeivsnppaistndslRKDEFVAENMCkqelsdekswKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSkfdfngttgnnevrrrsrylrrrgrvrrlkytwksaayhsirkriterkdqpcRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKsqcrsrqcpcfaadrecdpdvcrncwir

MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSeeevieeeeKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANssshkhakssssGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVrrrsrylrrrgrvrrLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWIR

******************************TRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLL********************************************NIIRPIKLNDNKRLPPYTTWIFLDRN***********RRRIYYDQNGGEALIC***************FVDSEDYILRMTIKEVGLSDATLESLAQCF*********************************NNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKS**************************************************************************************KVGICK********RALVC*****************************************************************************************************************SWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFN************************KYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWI*

*************************************VIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRL*************************************************************TKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS*****************************************AALDSFDNLFCRRCLVFDCRLHGC************************GPHCYRSVL*****************************************************************************************************************************************************************************************************************************WKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS************************************************************IRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWI*

************************TENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGID***********QEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDS***********DFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISS***************************************************************VGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDM***********************************IQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGC***********CPCFAADRECDPDVCRNCWIR

*****************************LTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQ******SVDLLTKRQREALGVQNGIDV**GDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEE***************NNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSE************************************************************************************************************************************************************************************************************************KSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSEN**********************************SRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWIR

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		747	2.2.26 [Sep-21-2011]
P93831		902	Histone-lysine N-methyltr	yes	no	0.943	0.781	0.575	0.0
Q8S4P6		931	Histone-lysine N-methyltr	N/A	no	0.925	0.742	0.538	0.0
Q8S4P4		895	Histone-lysine N-methyltr	N/A	no	0.871	0.727	0.403	1e-112
Q9ZSM8		856	Histone-lysine N-methyltr	no	no	0.248	0.217	0.626	2e-66
Q8S4P5		894	Histone-lysine N-methyltr	N/A	no	0.291	0.243	0.527	1e-55
O65312		689	Histone-lysine N-methyltr	no	no	0.223	0.242	0.474	8e-44
A7E2Z2		747	Histone-lysine N-methyltr	yes	no	0.210	0.210	0.324	2e-17
Q92800		747	Histone-lysine N-methyltr	yes	no	0.210	0.210	0.324	2e-17
Q5RDS6		747	Histone-lysine N-methyltr	yes	no	0.210	0.210	0.324	2e-17
P70351		747	Histone-lysine N-methyltr	yes	no	0.210	0.210	0.319	4e-17

>sp\|P93831\|CLF_ARATH Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2	Back alignment and function desciption

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/739 (57%), Positives = 519/739 (70%), Gaps = 34/739 (4%)

Query: 13  RSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHL 72
           RSEP K S     E      KE+  VI+ LK ++AAD  +S+++R+++N++ L  +T   
Sbjct: 13  RSEPPKDSP---AEERGPASKEVSEVIESLKKKLAADRCISIKKRIDENKKNLFAITQSF 69

Query: 73  YRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTA-VY 131
            R S+ER  +         DLL KRQR++ G+++GID S+ +R      EDG AS+  V 
Sbjct: 70  MRSSMERGGS----CKDGSDLLVKRQRDSPGMKSGIDESNNNR----YVEDGPASSGMVQ 121

Query: 132 GSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALIC 191
           GSS P K  +RPIK+ D KRL PYTTW+FLDRNQRMTEDQSV+ RRRIYYDQ GGEALIC
Sbjct: 122 GSSVPVKISLRPIKMPDIKRLSPYTTWVFLDRNQRMTEDQSVVGRRRIYYDQTGGEALIC 181

Query: 192 SDSEEEVIEEEE-KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEIL 250
           SDSEEE I++EE K+DF++ EDYI+RMT++++GLSD+ L  LA   SRS SE+KAR+ +L
Sbjct: 182 SDSEEEAIDDEEEKRDFLEPEDYIIRMTLEQLGLSDSVLAELASFLSRSTSEIKARHGVL 241

Query: 251 SKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPA 310
            KE+      +   D    ++ L KD+E ALDSFDNLFCRRCLVFDCRLHGCSQDL+FPA
Sbjct: 242 MKEKEV----SESGDNQAESSLLNKDMEGALDSFDNLFCRRCLVFDCRLHGCSQDLIFPA 297

Query: 311 EKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRK 370
           EK   W    + N+ CG +CY+++LKS R      P  G I+ K  +SSDGAG +T+  K
Sbjct: 298 EKPAPWCPPVDENLTCGANCYKTLLKSGR-----FPGYGTIEGKTGTSSDGAGTKTTPTK 352

Query: 371 ---KFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGI 427
              K +G  R+ K+  SESASSN K   E+SDSE G +QDT     SS  K K  G+   
Sbjct: 353 FSSKLNG--RKPKTFPSESASSNEKCALETSDSENGLQQDTNSDKVSSSPKVKGSGRRVG 410

Query: 428 CKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHK 487
            KR   RVAER     QK+QKK  A D DS+ASG   PSD K      K+NEDA SSS K
Sbjct: 411 RKRNKNRVAERVPRKTQKRQKKTEASDSDSIASGSCSPSDAK-----HKDNEDATSSSQK 465

Query: 488 HAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMC 547
           H KS +SGK+RK     + S N +   VP+  S E+ S   A  +++SLRK+EF+ E + 
Sbjct: 466 HVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNEVASELDAPGSDESLRKEEFMGETVS 525

Query: 548 KQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQ 607
           +  L+  K W+ +EK LFDKGVEIFG NSCLIARNLL+G K+CWEVFQYMTCSENK    
Sbjct: 526 RGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARNLLSGFKSCWEVFQYMTCSENKASFF 585

Query: 608 AGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITE 667
            GD      +G SKFD NG   NN+VRRRSR+LRRRG+VRRLKYTWKSAAYHSIRKRITE
Sbjct: 586 GGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRRRGKVRRLKYTWKSAAYHSIRKRITE 643

Query: 668 RKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC 727
           +KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC
Sbjct: 644 KKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC 703

Query: 728 PCFAADRECDPDVCRNCWI 746
           PCFAADRECDPDVCRNCW+
Sbjct: 704 PCFAADRECDPDVCRNCWV 722

Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. Required to regulate floral development by repressing the AGAMOUS homeotic gene in leaves, influorescence stems and flowers. Regulates the antero-posterior organization of the endosperm, as well as the division and elongation rates of leaf cells. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q8S4P6\|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea mays GN=EZ1 PE=2 SV=1	Back alignment and function description

>sp\|Q8S4P4\|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Zea mays GN=EZ3 PE=2 SV=1	Back alignment and function description

>sp\|Q9ZSM8\|EZA1_ARATH Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1	Back alignment and function description

>sp\|Q8S4P5\|EZ2_MAIZE Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2 PE=2 SV=1	Back alignment and function description

>sp\|O65312\|MEDEA_ARATH Histone-lysine N-methyltransferase MEDEA OS=Arabidopsis thaliana GN=MEA PE=1 SV=1	Back alignment and function description

>sp\|A7E2Z2\|EZH1_BOVIN Histone-lysine N-methyltransferase EZH1 OS=Bos taurus GN=EZH1 PE=2 SV=2	Back alignment and function description

>sp\|Q92800\|EZH1_HUMAN Histone-lysine N-methyltransferase EZH1 OS=Homo sapiens GN=EZH1 PE=1 SV=2	Back alignment and function description

>sp\|Q5RDS6\|EZH1_PONAB Histone-lysine N-methyltransferase EZH1 OS=Pongo abelii GN=EZH1 PE=2 SV=1	Back alignment and function description

>sp\|P70351\|EZH1_MOUSE Histone-lysine N-methyltransferase EZH1 OS=Mus musculus GN=Ezh1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		747
224084364		917	SET domain protein [Populus trichocarpa]	0.959	0.781	0.689	0.0
225438762		950	PREDICTED: histone-lysine N-methyltransf	0.951	0.748	0.700	0.0
224094296		892	SET domain protein [Populus trichocarpa]	0.942	0.789	0.702	0.0
296082393		934	unnamed protein product [Vitis vinifera]	0.951	0.761	0.700	0.0
449463949		927	PREDICTED: LOW QUALITY PROTEIN: histone-	0.990	0.798	0.661	0.0
356540672		869	PREDICTED: histone-lysine N-methyltransf	0.886	0.761	0.616	0.0
374306302		897	CLF-like protein [Aquilegia coerulea]	0.947	0.789	0.593	0.0
357482819		870	Histone-lysine N-methyltransferase CLF [	0.886	0.760	0.611	0.0
34393748		922	PHCLF1 [Petunia x hybrida]	0.961	0.778	0.598	0.0
350536571		921	EZ2 protein [Solanum lycopersicum] gi\|15	0.987	0.801	0.586	0.0

>gi\|224084364\|ref\|XP_002307273.1\| SET domain protein [Populus trichocarpa] gi\|222856722\|gb\|EEE94269.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/740 (68%), Positives = 586/740 (79%), Gaps = 23/740 (3%)

Query: 13  RSEPLKSSSLTKT-ENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNH 71
           RSEP K S + K+ ++ TL  +E+L VI+ LK QVAAD  + V +R+E+NRQKL+G+TNH
Sbjct: 16  RSEPPKDSPMIKSNQDTTLASEEVLLVIESLKKQVAADRCIYVMKRMEENRQKLVGITNH 75

Query: 72  LYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVY 131
           L +LS ER+NN    T  S+DL TKRQ +AL +  GID ++ D+DSH S+EDG+ASTAV 
Sbjct: 76  LDKLSKERKNNWISGTDNSIDLFTKRQNDALSMHGGIDSTNVDKDSHGSEEDGHASTAVL 135

Query: 132 -GSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALI 190
            GSS P KN +RPIKL +  RLPPYT+W+FLDRNQRMTEDQSV+ RRRIYYDQNGGEALI
Sbjct: 136 LGSSIPVKNAVRPIKLPEVNRLPPYTSWVFLDRNQRMTEDQSVVGRRRIYYDQNGGEALI 195

Query: 191 CSDSEEEVIEEEE-KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEI 249
           CSDSEEE+I+EEE K+ FV+SEDYILRMTIKE G SD  +ESLA CFSRSPSEVKAR+E+
Sbjct: 196 CSDSEEEIIDEEEAKRYFVESEDYILRMTIKEAGSSDPVVESLAHCFSRSPSEVKARFEV 255

Query: 250 LSKEESAVGGSNNGNDE-HTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVF 308
           L KEE AV  S N + E  T+N+FLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDL+F
Sbjct: 256 LKKEEKAVEDSKNKDIEAQTLNSFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLIF 315

Query: 309 PAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSS 368
            AEKQ  W +  E N+ CG HCY+              L+G I+E  I  SDGA    SS
Sbjct: 316 LAEKQSPWSY-PEDNITCGSHCYK--------------LHGVIEENSICQSDGARVPISS 360

Query: 369 RKKFSGPA--RRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVG 426
           RKK S  +  R VKS QSESASSNAKN+SESSDSE+G  QDT+ T   SPSKS LVGK G
Sbjct: 361 RKKTSASSARRNVKSCQSESASSNAKNISESSDSEIGPHQDTSPTSQISPSKSMLVGKGG 420

Query: 427 ICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSH 486
            CKR SKRVAER L C +K+QKKM A D DSVASGG+L  D+K RSTS K  EDA SSSH
Sbjct: 421 TCKRNSKRVAERVLSCMRKRQKKMVASDSDSVASGGLLSIDLKRRSTSHKGKEDA-SSSH 479

Query: 487 KHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENM 546
           K+AKS +  ++R+KE+  QDS NL+      G S E+V+NPP  S++D+LRK+EF+ E+ 
Sbjct: 480 KNAKSPTIARSRRKELMNQDSHNLVQGEFHDGLSSEMVANPPVTSSDDTLRKEEFIDEHK 539

Query: 547 CKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFC 606
           CK+ELSD++SWK IEKGLF+KGVEIFG NSCLIARNLLNGLKTCWEVFQYMT SEN+  C
Sbjct: 540 CKKELSDDRSWKAIEKGLFEKGVEIFGGNSCLIARNLLNGLKTCWEVFQYMTRSENRPAC 599

Query: 607 QAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRIT 666
           +AGDA T L EGYSKFDFNGT   NE RRRSR+LRRR +VRRLKY+WKS AYHS RKRIT
Sbjct: 600 EAGDAGT-LGEGYSKFDFNGTMVKNEARRRSRFLRRRSKVRRLKYSWKSTAYHSFRKRIT 658

Query: 667 ERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQ 726
           ERKDQPCRQYNPC CQTACGKQC CLLNGTCCEKYC CPKSCKNRFRGCHCAKSQCRSRQ
Sbjct: 659 ERKDQPCRQYNPCSCQTACGKQCTCLLNGTCCEKYCRCPKSCKNRFRGCHCAKSQCRSRQ 718

Query: 727 CPCFAADRECDPDVCRNCWI 746
           CPCFAADRECDPDVCRNCWI
Sbjct: 719 CPCFAADRECDPDVCRNCWI 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225438762\|ref\|XP_002278164.1\| PREDICTED: histone-lysine N-methyltransferase CLF-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224094296\|ref\|XP_002310129.1\| SET domain protein [Populus trichocarpa] gi\|222853032\|gb\|EEE90579.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296082393\|emb\|CBI21398.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449463949\|ref\|XP_004149692.1\| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus] gi\|449508283\|ref\|XP_004163272.1\| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356540672\|ref\|XP_003538810.1\| PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max]	Back alignment and taxonomy information

>gi\|374306302\|gb\|AEZ06400.1\| CLF-like protein [Aquilegia coerulea]	Back alignment and taxonomy information

>gi\|357482819\|ref\|XP_003611696.1\| Histone-lysine N-methyltransferase CLF [Medicago truncatula] gi\|355513031\|gb\|AES94654.1\| Histone-lysine N-methyltransferase CLF [Medicago truncatula]	Back alignment and taxonomy information

>gi\|34393748\|dbj\|BAC84950.1\| PHCLF1 [Petunia x hybrida]	Back alignment and taxonomy information

>gi\|350536571\|ref\|NP_001234765.1\| EZ2 protein [Solanum lycopersicum] gi\|156789074\|gb\|ABU96078.1\| EZ2 [Solanum lycopersicum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		747
TAIR\|locus:2005501		902	CLF "CURLY LEAF" [Arabidopsis	0.828	0.686	0.569	1.1e-183
TAIR\|locus:2132178		856	SWN "SWINGER" [Arabidopsis tha	0.248	0.217	0.605	2.1e-113
TAIR\|locus:2196110		689	MEA "MEDEA" [Arabidopsis thali	0.230	0.249	0.455	3.7e-57
UNIPROTKB\|E1BD02		751	EZH2 "Uncharacterized protein"	0.091	0.090	0.5	5.9e-26
UNIPROTKB\|E2R6Q2		751	EZH2 "Uncharacterized protein"	0.091	0.090	0.5	8.1e-25
UNIPROTKB\|E1C0W5		761	EZH2 "Uncharacterized protein"	0.091	0.089	0.5	1.1e-24
UNIPROTKB\|Q28D84		748	ezh2 "Histone-lysine N-methylt	0.091	0.090	0.5	1.3e-24
ZFIN\|ZDB-GENE-050114-1		749	ezh1 "enhancer of zeste homolo	0.120	0.120	0.431	3.1e-24
UNIPROTKB\|Q98SM3		748	ezh2-a "Histone-lysine N-methy	0.091	0.090	0.5	3.3e-24
UNIPROTKB\|Q15910		746	EZH2 "Histone-lysine N-methylt	0.091	0.091	0.5	5.2e-24

TAIR\|locus:2005501 CLF "CURLY LEAF" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1782 (632.4 bits), Expect = 1.1e-183, P = 1.1e-183
 Identities = 367/644 (56%), Positives = 437/644 (67%)

Query:   110 VSSGDRDSHISQ--EDGYASTA-VYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQR 166
             + SG  +S+ ++  EDG AS+  V GSS P K  +RPIK+ D KRL PYTTW+FLDRNQR
Sbjct:    97 MKSGIDESNNNRYVEDGPASSGMVQGSSVPVKISLRPIKMPDIKRLSPYTTWVFLDRNQR 156

Query:   167 MTEDQSVMSRRRIYYDQNGGEALICSDSXXXXXXXXX-KKDFVDSEDYILRMTIKEVGLS 225
             MTEDQSV+ RRRIYYDQ GGEALICSDS          K+DF++ EDYI+RMT++++GLS
Sbjct:   157 MTEDQSVVGRRRIYYDQTGGEALICSDSEEEAIDDEEEKRDFLEPEDYIIRMTLEQLGLS 216

Query:   226 DATLESLAQCFSRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFD 285
             D+ L  LA   SRS SE+KAR+ +L KE+     S +G D    ++ L KD+E ALDSFD
Sbjct:   217 DSVLAELASFLSRSTSEIKARHGVLMKEKEV---SESG-DNQAESSLLNKDMEGALDSFD 272

Query:   286 NLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACS 345
             NLFCRRCLVFDCRLHGCSQDL+FPAEK   W    + N+ CG +CY+++LKS R      
Sbjct:   273 NLFCRRCLVFDCRLHGCSQDLIFPAEKPAPWCPPVDENLTCGANCYKTLLKSGR-----F 327

Query:   346 PLNGDIKEKFISSSDGAGAQTSSRKKFSGP--ARRVKSHQSESASSNAKNLSESSDSEVG 403
             P  G I+ K  +SSDGAG +T+  K FS     R+ K+  SESASSN K   E+SDSE G
Sbjct:   328 PGYGTIEGKTGTSSDGAGTKTTPTK-FSSKLNGRKPKTFPSESASSNEKCALETSDSENG 386

Query:   404 QRQDTAFTHHSSPSKSKLVGK-VGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGG 462
              +QDT     SS  K K  G+ VG  KR   RVAER     QK+QKK  A D DS+ASG 
Sbjct:   387 LQQDTNSDKVSSSPKVKGSGRRVGR-KRNKNRVAERVPRKTQKRQKKTEASDSDSIASGS 445

Query:   463 VLPSDMKLRSTSRKENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQE 522
               PSD K      K+NEDA             GK+RK     + S N +   VP+  S E
Sbjct:   446 CSPSDAK-----HKDNEDATSSSQKHVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNE 500

Query:   523 IVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARN 582
             + S   A  +++SLRK+EF+ E + +  L+  K W+ +EK LFDKGVEIFG NSCLIARN
Sbjct:   501 VASELDAPGSDESLRKEEFMGETVSRGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARN 560

Query:   583 LLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVXXXXXXXXX 642
             LL+G K+CWEVFQYMTCSENK     GD      +G SKFD NG   NN+V         
Sbjct:   561 LLSGFKSCWEVFQYMTCSENKASFFGGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRR 618

Query:   643 XXXXXXLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYC 702
                   LKYTWKSAAYHSIRKRITE+KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYC
Sbjct:   619 RGKVRRLKYTWKSAAYHSIRKRITEKKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYC 678

Query:   703 GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWI 746
             GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCW+
Sbjct:   679 GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWV 722

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP

GO:0016571 "histone methylation" evidence=RCA;IMP

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0045857 "negative regulation of molecular function, epigenetic" evidence=IMP

GO:0003727 "single-stranded RNA binding" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR\|locus:2132178 SWN "SWINGER" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2196110 MEA "MEDEA" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BD02 EZH2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R6Q2 EZH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C0W5 EZH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28D84 ezh2 "Histone-lysine N-methyltransferase EZH2" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050114-1 ezh1 "enhancer of zeste homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q98SM3 ezh2-a "Histone-lysine N-methyltransferase EZH2" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|Q15910 EZH2 "Histone-lysine N-methyltransferase EZH2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93831	CLF_ARATH	2, ., 1, ., 1, ., 4, 3	0.5751	0.9437	0.7815	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.43	0.914
3rd Layer	2.1.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	SDG916	SET domain protein (917 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PGE901	polycomb group protein (371 aa)	•	•	0.413

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		747
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	100.0
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	95.57
PF03638		42	TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do	94.55
PF00249		48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	94.53
cd00167		45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	94.5
smart00717		49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	94.44
smart00717		49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	94.2
PF13921		60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	93.58
cd00167		45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	91.58
PF00249		48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	84.01
PF11616		30	EZH2_WD-Binding: WD repeat binding protein EZH2; I	82.45
KOG1171		406	consensus Metallothionein-like protein [Inorganic	81.82

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3.7e-88  Score=746.75  Aligned_cols=511  Identities=32%  Similarity=0.447  Sum_probs=375.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcccccccCCCCchhhhHHhhhccccccccCCCCCCCCCccccccCc
Q 004522           46 VAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGY  125 (747)
Q Consensus        46 i~~eR~~~IK~k~e~Nr~kL~~~ts~l~~~~~~r~~~~~~~~~~~~~~Ls~R~~~pl~~~~g~~~~~~~~d~~~~~d~~~  125 (747)
                      |+..++.+++++...+|.+...+|+.+- +...+....   .-+.+.++..++.-|++++||+..+..+.+...+-++  
T Consensus        52 ~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~i~---~~n~~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~--  125 (739)
T KOG1079|consen   52 RRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQKSPIN---ELNAVAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGD--  125 (739)
T ss_pred             hhcccccccccccccccccccccccccc-Ccccccchh---hhcccccccccccCChhhhcceecccceecccccccc--
Confidence            7777777777777777777777887774 555544432   2234678888888899999998666555444432221  


Q ss_pred             cccccccCCCCCccccccccccCCCCCCCccceeeccccccccccccccccceeeecCCCCeeeecCCchhhchhhhhhc
Q 004522          126 ASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKK  205 (747)
Q Consensus       126 ~~~~v~~ss~~~k~~v~~ikLp~veklPpyttWifLdrNqRMaEDqSVvGRRrIYYDq~ggEaLIcSDsEEE~~eeeeK~  205 (747)
                         .           |..|++|.+|.|++|++|||+||||||++||+|||+|+||| |.|||++| ||+|||.+.+|||+
T Consensus       126 ---~-----------v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e~~~~~ekr  189 (739)
T KOG1079|consen  126 ---E-----------VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEEEVLEEEKR  189 (739)
T ss_pred             ---c-----------ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccccchhhhcc
Confidence               1           24599999999999999999999999999999999999999 99999999 99999966699999


Q ss_pred             ccccchhh-HHHHHHhhcCCcHHHHHHHHhhcC--CChHHHHHHHHHhhcccccC----CCCCCCCCCcccccchhhh-H
Q 004522          206 DFVDSEDY-ILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILSKEESAV----GGSNNGNDEHTMNNFLVKD-L  277 (747)
Q Consensus       206 ~f~e~eD~-~l~m~~~e~glsd~Vl~~l~~~~~--~~~seI~eRy~~L~~~~~~~----~~~~~~~~~~~~~~~ldK~-l  277 (747)
                      +|.|++|. ++|++.+.+|+.+.||++|+++|.  ++.++|+|||.+|+......    ++.++     ..++.|++. +
T Consensus       190 ~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~~~~~~-----id~~~ae~~~r  264 (739)
T KOG1079|consen  190 DFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEPECTPN-----IDGSSAEPVQR  264 (739)
T ss_pred             cccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCcccccC-----CCccccChHHH
Confidence            99999999 899999999999999999999999  99999999999998554443    23332     224556666 9


Q ss_pred             HHHhhhcccccccccccccccCcCCCCCccccCCCCCCCCCCCCCCCCCcccchhcccccccccccCCCCCCCccccccc
Q 004522          278 EAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFIS  357 (747)
Q Consensus       278 ~~aLdSFdnlFCRRCliFDCrlHgcSQ~LI~p~ekq~~~~e~~~d~~PCg~~Cyl~~~~~~~~~~~~~~~~~~~e~~~~~  357 (747)
                      +++|||||||||||||+|||+||| +|.++||.++.-.|.++....+|||+.||.++.+......               
T Consensus       265 ~~~l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m---------------  328 (739)
T KOG1079|consen  265 EQALHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTM---------------  328 (739)
T ss_pred             HhhhcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhh---------------
Confidence            999999999999999999999999 9999999999999999999999999999999865432100               


Q ss_pred             CCCCCCCccCCcccCCCCcccccccccccccccccccCCCCccccccCCCCCccccCCCCccccccccccccccchhHHH
Q 004522          358 SSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAE  437 (747)
Q Consensus       358 ~~~~~~~~~~~~k~~~~~~~~~k~~~~es~ss~~~~~Sessds~~~~~~~~~~~~~~s~~~~~~~~~~g~~k~~~~~~~e  437 (747)
                       +.+.                                                        .+.++..|.          
T Consensus       329 -~~~~--------------------------------------------------------~~~~p~~g~----------  341 (739)
T KOG1079|consen  329 -SAVV--------------------------------------------------------SKCPPIRGD----------  341 (739)
T ss_pred             -hccc--------------------------------------------------------ccCCCCcch----------
Confidence             0000                                                        000000000          


Q ss_pred             HHHHHHHhhhhhhhccccccccCCCCCCccccccccccccccccCCCcccccCCCCCcccccchhhhhccccccccccCC
Q 004522          438 RALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPL  517 (747)
Q Consensus       438 ~~~~~~~k~qkk~~~~d~ds~~~~~~~~~d~~l~s~~~~~~~~~~~~s~~~~~~~~~~~s~~k~~~~~~s~n~~~~~~~~  517 (747)
                             +|||--.++..+|         |     +.+...++.+..+.....++.-...           |.+..  .+
T Consensus       342 -------~~qk~~~~~~~~s---------~-----~~~~~~e~~g~~~d~~v~~~~~~~~-----------~~v~~--~~  387 (739)
T KOG1079|consen  342 -------IRQKLVKASSMDS---------D-----DEHVEEEDKGHDDDDGVPRGFGGSV-----------NFVGE--DD  387 (739)
T ss_pred             -------hhhhhcccccCCc---------c-----hhhccccccCccccccccccccccc-----------ccccC--Cc
Confidence                   1222111111111         0     1122333333333333322210000           00000  00


Q ss_pred             CCcccccCCCCCCCCCCccchhhhhhhhhhccccCCCCCcchhhhHHHHHHHHhhCCCchHHHHhhhCCCCcHHHHHHHH
Q 004522          518 GSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYM  597 (747)
Q Consensus       518 ~~~~~~~~~~~~~~~~d~~r~~e~v~~~~~~~e~~~~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym  597 (747)
                      ++..           .++.+..    .+....+-....+|+++|+.||++|+.+||.|+|+|||+|  ++|||++||+||
T Consensus       388 ~~~~-----------s~~~~~c----~~~~~~~~~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l--~~ktC~~v~~~~  450 (739)
T KOG1079|consen  388 TSTH-----------SSTNSIC----QNPVHGKKDTNVEWNGAEKVLFRVGSTLYGTNRCSIARNL--LTKTCRQVYEYE  450 (739)
T ss_pred             cccc-----------ccccccc----cCcccccCCcccccchhhhHHHHhccccccchhhHHHHHh--cchHHHHHHHHh
Confidence            0000           0000000    0000000012568999999999999999999999999998  569999999999


Q ss_pred             HhhhhccccccCcchhhhcccCCccCCCCCCCCcccccchhhHhhhccccccccccccccchhhHHhhhccCCCCCCCCC
Q 004522          598 TCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYN  677 (747)
Q Consensus       598 ~~~~~~l~~~~~~~~~si~~~~~k~d~~~~~~~~~~~~rsr~~rRr~r~RkLky~wksag~h~~~kRi~~gKd~~~~~y~  677 (747)
                      +.+........+.                ......+++|.+.+|+.++.|++++.|+++.|+.+|            .|+
T Consensus       451 ~~e~~~~~~~~~~----------------~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~------------~~q  502 (739)
T KOG1079|consen  451 QKEVLQGLYFDGR----------------FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVW------------NYQ  502 (739)
T ss_pred             hcchhhceecccc----------------cccccCcchhhHHHHhhhhHHHhhhcccccCCceee------------ecC
Confidence            9876543333221                123456677899999999999999999999887654            388


Q ss_pred             CCCCCCCC--CCCCcccccCceeccccCCCcccCCCCCCcccCCCCcCCCCccccccCCcCCccccCcCCC
Q 004522          678 PCGCQTAC--GKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWI  746 (747)
Q Consensus       678 PC~h~gpC--~~~C~C~~~g~~CEk~C~C~~~C~nRF~GC~C~k~qC~t~~CpC~~a~RECDPdlC~~Cgv  746 (747)
                      ||+|+|+|  +.+|+|+.+++||||||+|+++|.||||||+| ++||+|+|||||+|+||||||+|..||+
T Consensus       503 pC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~  572 (739)
T KOG1079|consen  503 PCDHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN  572 (739)
T ss_pred             cccCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc
Confidence            99998766  68999999999999999999999999999999 8999999999999999999999999995

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C	Back alignment and domain information

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins	Back alignment and domain information

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains	Back alignment and domain information

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	Back alignment and domain information

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	Back alignment and domain information

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A	Back alignment and domain information

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains	Back alignment and domain information

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins	Back alignment and domain information

>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68	Back alignment and domain information

>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		747
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 60.6 bits (146), Expect = 1e-09
 Identities = 89/544 (16%), Positives = 163/544 (29%), Gaps = 136/544 (25%)

Query: 190 ICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEI 249
           I S  E+  ++  + KD  D          K + LS   ++ +      S   V     +
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMP--------KSI-LSKEEIDHIIM----SKDAVSGTLRL 67

Query: 250 ----LSKEESA----VGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHG 301
               LSK+E      V      N +  M+    +  + ++ +   +  R       RL+ 
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD------RLYN 121

Query: 302 CSQDLVFPAEKQPLWYHLDEGNVPCGPHCY---RSVLKSERNATACSPLNGDIKEKFISS 358
            +Q  VF            + NV      Y   R  L   R A     ++G +       
Sbjct: 122 DNQ--VFA-----------KYNVS-RLQPYLKLRQALLELRPAKNVL-IDGVL------- 159

Query: 359 SDGAG-----AQTSSRKKF-SGPARRV------KSHQSESASSNAKNLSESSDSEVGQRQ 406
             G+G            K       ++        +  E+     + L    D     R 
Sbjct: 160 --GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 407 DTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPS 466
           D     HSS  K ++          S +   R L+  + K  +     L +V +     +
Sbjct: 218 D-----HSSNIKLRI---------HSIQAELRRLL--KSKPYENCLLVLLNVQNAKAWNA 261

Query: 467 -DMKLRS--TSR-KENED---ANSSSHKHAKSSSSGKTRKK---------EMQIQDSRNL 510
            ++  +   T+R K+  D   A +++H      S   T  +         + + QD    
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 511 MHVRVPLGSSQ--EIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIE----KGL 564
           +    P   S   E + +  A         D +   N  K     E S   +E    + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLA-------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 565 FDKGVEIFGRNSCLIARNLLNGLKTCW------EVFQYMTCSENK--LFCQAGDAATSLL 616
           FD+ + +F   S  I   LL+ +   W      +V   +        +  Q  ++  S+ 
Sbjct: 375 FDR-LSVF-PPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 617 EGYSKFDFNGTTGNN-EVRRR--SRYLRRRGR-------VRRLKYTWKSAAYHSIRKRIT 666
             Y   +      N   + R     Y   +             +Y +    +H       
Sbjct: 430 SIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 667 ERKD 670
           ER  
Sbjct: 488 ERMT 491

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		747
d1ml9a_		284	b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T	3e-05

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 11/87 (12%), Positives = 18/87 (20%), Gaps = 8/87 (9%)

Query: 658 YHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHC 717
           +  I   I  +      Q    GC         C  +  C    C C             
Sbjct: 19  FRFIDHSIIGKNVPVADQSFRVGC--------SCASDEECMYSTCQCLDEMAPDSDEEAD 70

Query: 718 AKSQCRSRQCPCFAADRECDPDVCRNC 744
             ++ +        A +    D     
Sbjct: 71  PYTRKKRFAYYSQGAKKGLLRDRVLQS 97

PyMOL of d1ml9a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		747
d1ug2a_		95	2610100b20rik gene product {Mouse (Mus musculus) [	96.02
d2iw5b1		65	REST corepressor 1, CoREST {Human (Homo sapiens) [	94.54
d2crga1		57	Metastasis associated protein MTA3 {Mouse (Mus mus	94.49
d2cqra1		60	DnaJ homolog subfamily C member 1 {Human (Homo sap	94.28
d1xc5a1		68	Nuclear receptor corepressor 2 {Human (Homo sapien	93.02
d1guua_		50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	92.58
d1gv2a2		47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	92.28
d1w0ua_		55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	91.98
d2cu7a1		65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	91.64
d2cjja1		63	Radialis {Garden snapdragon (Antirrhinum majus) [T	91.3
d1gvda_		52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	88.64
d2cu7a1		65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	88.35
d1x41a1		47	Transcriptional adaptor 2-like, TADA2L, isoform b	86.6
d1igna1		86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	85.09
d1w0ta_		52	DNA-binding domain of human telomeric protein, hTR	84.88
d1x41a1		47	Transcriptional adaptor 2-like, TADA2L, isoform b	84.61
d2cqqa1		59	DnaJ homolog subfamily C member 1 {Human (Homo sap	82.1
d2iw5b1		65	REST corepressor 1, CoREST {Human (Homo sapiens) [	81.87

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0024  Score=37.82  Aligned_cols=50  Identities=20%  Similarity=0.297  Sum_probs=44.4

Q ss_pred             HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHCC
Q ss_conf             0335654015788777530996899999984428-9927899999995202
Q 004522          204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILSKE  253 (747)
Q Consensus       204 K~eF~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~-~~~seI~eRy~~L~~~  253 (747)
                      .--|+..||++|....|++|..+..|..|+++|+ +++.+|.+||..|.+-
T Consensus        33 ~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             577578888999999998399487999999985899999999999999999

PyMOL of d1ug2a_

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}	Back information, alignment and structure

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure