Citrus Sinensis ID: 004529

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740------
MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKATRSKHSKSSGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQSSS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHEEccEEEEEEEEcccccEEEEccccccEEHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccEEccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccEEEEccccccEEEEEEEEEEEEEccccEEEEcccccEEcccHHHHHccccccccccccccccccccccccEEEEccEEEcEEcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccEccccHHHHHHHHHHHHHHHHHHHHccHHEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccEEcccEEEccHHHHHHHHHHcccEHEHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHcccccccccEEEEEcccHcEEEEEEEcEEEEEccccEEEEEccccccHHHHHHHHccccccccccccEEcccccccccccEEEEEHHHHHHccHHHHHHHHHHHHHHHccccHEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
magdekdempmlsdsqskssdrnfDFRLQTFASrtrsasmsitmnstdsfepeanlvgltgplrnerrtqflqmsgplysnrkpdhifrrnqgvtgvnLVETkaekfpsfsgmdqndwpddryeaknehllrsgqlgmcndpycttcptyykatrskhskssgifdpkfhnalygdAKGWARRFISSLQRyvpgimnphtrIVQQWKQFFVITCLVAIFVDPLFFFLLSVQqnnkcivinwpWTKAIVVVRSMTDLIYFLNILLQFRLayvapesrvvgagelvdhpkKIALNYLRGYFFIdffvalplpqyiprlykflplfagqsstgfiFESAWANFFINLFTFTLsghivgsgwYLFGLQRVNQCLrdachnssiqdckkfldcghgnggaeysqdqtwkswsgnqqasdcfekdkfsygIYEQAVKLTTENSIITRYVYSLFWGFQQistlagnqtpsyfvgEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAatrgvnedmlftnLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQktyisgskilyrggLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEhssvnrdakryripgqrllcnrtvrclTNVEAFSLRAADIEEVTSLFARFLrsprvqgairyespywRCRAAIVIQVAWRYRKKrlnradtshslsnqsss
magdekdempmlsdsqskssdrnfdFRLQTFasrtrsasmsitmnstdsfepeaNLVGLTGPLRNERRTQFLQMsgplysnrkpdhiFRRNQGVTGVNLvetkaekfpsfsgmdqndWPDDRYEAKNEHLLRsgqlgmcndpYCTTCPTYYKATRskhskssgifdpKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRdveqwmrhrrlpeqlrrqVREAERYNwaatrgvnedmlftNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKtyisgskilyrgglIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHssvnrdakryripgqrllcnrtVRCLTNVEAFSLRAADIEEVTSLFArflrsprvqgairyespywrcRAAIVIQVAWRYRKKRlnradtshslsnqsss
MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKATRSKHSKSSGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQSSS
**************************************************************************************IFRRNQGVTGVNLVE***************************HLLRSGQLGMCNDPYCTTCPTYYKATR*******GIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRL***LRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRK******************
*****KD**************************************************************************************************************************************************************************************RYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSV*******RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWR*********************
********************DRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKA********SGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLN**************
**************************************S**ITMNSTDSFEPEANLVGLTGPLRNE***********************************************************************MCNDPY**********************************KGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSS*****KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRA************
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MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKATRSKHSKSSGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query746 2.2.26 [Sep-21-2011]
Q9LD37764 Probable cyclic nucleotid yes no 0.947 0.925 0.615 0.0
Q9LDR2729 Putative cyclic nucleotid no no 0.930 0.951 0.577 0.0
Q9FXH6753 Putative cyclic nucleotid no no 0.699 0.693 0.400 1e-113
Q9S9N5738 Putative cyclic nucleotid no no 0.702 0.710 0.396 1e-109
Q9M0A4733 Putative cyclic nucleotid no no 0.702 0.714 0.393 1e-109
Q9SL29678 Putative cyclic nucleotid no no 0.717 0.789 0.392 1e-109
Q8L7Z0720 Probable cyclic nucleotid no no 0.695 0.720 0.380 1e-107
O82226747 Probable cyclic nucleotid no no 0.812 0.811 0.363 1e-106
Q9SJA4726 Probable cyclic nucleotid no no 0.714 0.734 0.389 1e-106
Q9LNJ0711 Probable cyclic nucleotid no no 0.702 0.736 0.365 1e-105
>sp|Q9LD37|CNG20_ARATH Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1 Back     alignment and function desciption
 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/755 (61%), Positives = 570/755 (75%), Gaps = 48/755 (6%)

Query: 4   DEKDEMPML--SDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTG 61
           +E D++PML  SD  S++       R + F SR+RS S+S   +S + F+    ++G TG
Sbjct: 5   NENDDIPMLPISDPSSRT-------RARAFTSRSRSVSLSNPTSSIEGFDTSTVVLGYTG 57

Query: 62  PLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDD 121
           PLR +RR   +QMSGPL S RK + +F  +     V  V ++ E++PSF+ ++  +  +D
Sbjct: 58  PLRTQRRPPLVQMSGPLTSTRKHEPLFLPHPSSDSVG-VSSQPERYPSFAALEHKNSSED 116

Query: 122 RYEAKNEHLLRSGQLGMCNDPYCTTCPTYY--KATRSKHSKSSGIFDPKFHNALYGDAKG 179
            +  K+ +LLRSGQLGMCNDPYCTTCP+YY  KA +   S+ S +FD  FHNALY DAKG
Sbjct: 117 EFVLKHANLLRSGQLGMCNDPYCTTCPSYYNRKAAQIPTSRVSALFDSTFHNALYDDAKG 176

Query: 180 WARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVI 239
           WARRF SS+ RY+PGIMNPH + VQ W +FF ++CL+AIF+DPLFFFL+ VQ+ NKCI+I
Sbjct: 177 WARRFASSVNRYLPGIMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNKCIMI 236

Query: 240 NWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYF 299
           +WP TKA V VRS+TD+I+ +NILLQFRLAYVA ES VVGAG+LV HPKKIAL+YL+G F
Sbjct: 237 DWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHYLKGKF 296

Query: 300 FIDFFVALPLP------------------------------QYIPRLYKFLPLFAGQSST 329
           F+D F+ +PLP                              QYIP+LY+ LP  AGQ+ T
Sbjct: 297 FLDLFIVMPLPQILILWIIPAHLGASGANYAKNLLRAAVLFQYIPKLYRLLPFLAGQTPT 356

Query: 330 GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCG 389
           GFIFESAWANF INL TF L+GH+VGS WYLFGLQRVNQCLR+AC N   ++C+  +DCG
Sbjct: 357 GFIFESAWANFVINLLTFMLAGHVVGSCWYLFGLQRVNQCLRNACGNFG-RECQDLIDCG 415

Query: 390 HGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWG 449
           +GN     S      +W  N  A+ CF++D F YGIY +AV LT  +++ TRY YSLFWG
Sbjct: 416 NGN-----SSVLVRATWKDNASANACFQEDGFPYGIYLKAVNLTNHSNLFTRYSYSLFWG 470

Query: 450 FQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRR 509
           FQQISTLAGNQ PSYF+GEV FTM IIG+GLLLFA LIGNMQNFLQAL KR L+M+LRRR
Sbjct: 471 FQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRR 530

Query: 510 DVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKK 569
           DVEQWM HRRLP+ +RR+VREAER+NWAATRGVNE++LF N+P+DLQR+IRRHLFKF+KK
Sbjct: 531 DVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKK 590

Query: 570 VRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCL 629
           VRIF+LMDEPILDAI ERL+Q+TYI  S +L+RGGL+EKMVFIVRG+MESIGEDG  + L
Sbjct: 591 VRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESIGEDGSVLPL 650

Query: 630 SEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVT 689
            EGD CGEELLTWCLE SSVN D  R R+P + LL +R VRC+TNVEAFSL  AD+E+VT
Sbjct: 651 YEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVT 710

Query: 690 SLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAW 724
           SLF+RFLRS RVQGAIRY+SPYWR RAA  IQVAW
Sbjct: 711 SLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAW 745
Probable cyclic nucleotide-gated ion channel.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LDR2|CNG19_ARATH Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=3 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 Back     alignment and function description
>sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 Back     alignment and function description
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query746
255567305778 Cyclic nucleotide-gated ion channel, put 0.994 0.953 0.700 0.0
224125770785 predicted protein [Populus trichocarpa] 0.986 0.937 0.672 0.0
356531094781 PREDICTED: probable cyclic nucleotide-ga 0.985 0.941 0.656 0.0
359491793783 PREDICTED: probable cyclic nucleotide-ga 0.986 0.939 0.662 0.0
359491791779 PREDICTED: probable cyclic nucleotide-ga 0.987 0.946 0.665 0.0
224125766781 predicted protein [Populus trichocarpa] 0.989 0.944 0.640 0.0
296088025775 unnamed protein product [Vitis vinifera] 0.977 0.940 0.664 0.0
296088023777 unnamed protein product [Vitis vinifera] 0.978 0.939 0.662 0.0
356531090770 PREDICTED: probable cyclic nucleotide-ga 0.981 0.950 0.645 0.0
356560069778 PREDICTED: probable cyclic nucleotide-ga 0.991 0.951 0.640 0.0
>gi|255567305|ref|XP_002524633.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223536102|gb|EEF37758.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/778 (70%), Positives = 617/778 (79%), Gaps = 36/778 (4%)

Query: 1   MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLT 60
           MA  +KDE+PMLSD   +  D N D R Q F SRT+SAS+SI MN+ +S+  EANLVG T
Sbjct: 1   MASYDKDEVPMLSDVHPQLLDENPDSRFQAFVSRTQSASISIPMNTMESYGNEANLVGYT 60

Query: 61  GPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPD 120
           GPLR+ERR Q  QMSGP+YSNRK D  FR N GV    + E+KAEK PSFS MDQ+DW D
Sbjct: 61  GPLRSERRAQMNQMSGPIYSNRKADKNFRLNHGVPNRKVAESKAEKIPSFSKMDQHDWAD 120

Query: 121 DRYEAKNEHLLRSGQLGMCNDPYCTTCPTYY--KATRSKHSKSSGIFDPKFHNALYGDAK 178
           D+Y  KNEHLLRSGQLG+CNDPYCTTCPTYY  K    KH  +S IFD KFHNALYGDAK
Sbjct: 121 DKYTGKNEHLLRSGQLGVCNDPYCTTCPTYYNFKPAEQKHLTASAIFDSKFHNALYGDAK 180

Query: 179 GWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIV 238
           GWA RF S L+RY+PG+MNPHT++VQQW +F VI CLVAIFVDPLFFF+LSVQQ NKCIV
Sbjct: 181 GWATRFTSFLKRYIPGVMNPHTKVVQQWNKFCVICCLVAIFVDPLFFFMLSVQQENKCIV 240

Query: 239 INWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGY 298
           INWP T  I+V RSMTD IY LNILLQFRLAY+APESRVVGAGELVDHPKKIA+NYL GY
Sbjct: 241 INWPLTTTIIVFRSMTDFIYLLNILLQFRLAYIAPESRVVGAGELVDHPKKIAMNYLCGY 300

Query: 299 FFIDFFVALPLP------------------------------QYIPRLYKFLPLFAGQSS 328
           F +D F+ LPLP                              QY+PRLY+FLPL  G S 
Sbjct: 301 FLVDLFIMLPLPQIIILLVLPNGLGSSGANYAKNLLQAAVLVQYVPRLYRFLPLLVGVSP 360

Query: 329 TGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSI-QDCKKFLD 387
           +GFIFE+AW+NFFINL TF LSGH+VG+ WYLFGLQRVN+CLRDAC +SSI  +C +F+D
Sbjct: 361 SGFIFETAWSNFFINLLTFILSGHVVGALWYLFGLQRVNRCLRDACRHSSIWPECMQFID 420

Query: 388 CGHGNGGAEYSQDQTWKSWS-GNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSL 446
           CGHGN     + +  WK+W+  N  AS CF +D FSYGI+ QAV LTT +S++TRYVYSL
Sbjct: 421 CGHGNNVERNASNSKWKNWTQSNVNASACFTEDGFSYGIFIQAVNLTTRHSVVTRYVYSL 480

Query: 447 FWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSL 506
           FWGFQQISTLAGNQTPSYFV EVLFTMAI+GVGLLLFAFLIGN+QNFLQAL +RRL+MSL
Sbjct: 481 FWGFQQISTLAGNQTPSYFVWEVLFTMAIVGVGLLLFAFLIGNIQNFLQALGRRRLEMSL 540

Query: 507 RRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKF 566
           RRRDVEQWM HRRLP++LRR+V EAERYNWAATRGV E ML  NLPEDLQR+IRRHLFKF
Sbjct: 541 RRRDVEQWMSHRRLPQELRRKVLEAERYNWAATRGVIEGMLLENLPEDLQRDIRRHLFKF 600

Query: 567 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIA 626
           VKKV IFALMD   LDAICERL+QK YI GS+ILY GGL+EKMVFIVRGK+ESIGEDG  
Sbjct: 601 VKKVWIFALMDNHFLDAICERLKQKIYIKGSEILYHGGLVEKMVFIVRGKLESIGEDGTM 660

Query: 627 VCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIE 686
             LSEG+ CGEELLTWCLE SSV++D  + +IPGQRL+ +RTVRCL+NVEAFSLRAAD+E
Sbjct: 661 FPLSEGNVCGEELLTWCLERSSVSKDGVKVKIPGQRLISSRTVRCLSNVEAFSLRAADLE 720

Query: 687 EVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQS 744
           EVT+LFAR LR  RVQGAIRYESPYWR  AA  IQVAWRYR+KRL    TS   SNQS
Sbjct: 721 EVTNLFARNLRDSRVQGAIRYESPYWRGLAATRIQVAWRYRQKRLKHISTSR--SNQS 776

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125770|ref|XP_002329713.1| predicted protein [Populus trichocarpa] gi|222870621|gb|EEF07752.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531094|ref|XP_003534113.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|359491793|ref|XP_003634326.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491791|ref|XP_002270141.2| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125766|ref|XP_002329712.1| predicted protein [Populus trichocarpa] gi|222870620|gb|EEF07751.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296088025|emb|CBI35308.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088023|emb|CBI35306.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531090|ref|XP_003534111.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356560069|ref|XP_003548318.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query746
TAIR|locus:2090572764 CNBT1 "cyclic nucleotide-bindi 0.573 0.560 0.702 8e-258
TAIR|locus:2090562729 CNGC19 "cyclic nucleotide gate 0.577 0.591 0.650 3.6e-231
TAIR|locus:2013139753 CNGC8 "cyclic nucleotide gated 0.545 0.540 0.418 8.1e-108
TAIR|locus:2062814678 CNGC15 "cyclic nucleotide-gate 0.537 0.591 0.402 1.2e-106
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.548 0.557 0.418 1.3e-105
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.545 0.551 0.416 4.5e-105
TAIR|locus:2118816720 CNGC17 "cyclic nucleotide-gate 0.558 0.579 0.4 1.5e-104
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.571 0.594 0.380 9.5e-103
TAIR|locus:2046703726 CNGC14 "cyclic nucleotide-gate 0.563 0.578 0.399 1.2e-102
TAIR|locus:2061401747 CNGC6 "cyclic nucleotide-gated 0.552 0.551 0.409 2e-102
TAIR|locus:2090572 CNBT1 "cyclic nucleotide-binding transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1597 (567.2 bits), Expect = 8.0e-258, Sum P(2) = 8.0e-258
 Identities = 305/434 (70%), Positives = 356/434 (82%)

Query:   306 ALPLPQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQR 365
             A  L QYIP+LY+ LP  AGQ+ TGFIFESAWANF INL TF L+GH+VGS WYLFGLQR
Sbjct:   333 AAVLFQYIPKLYRLLPFLAGQTPTGFIFESAWANFVINLLTFMLAGHVVGSCWYLFGLQR 392

Query:   366 VNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGI 425
             VNQCLR+AC N   ++C+  +DCG+GN         TWK    N  A+ CF++D F YGI
Sbjct:   393 VNQCLRNACGNFG-RECQDLIDCGNGNSSVLVRA--TWKD---NASANACFQEDGFPYGI 446

Query:   426 YEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAF 485
             Y +AV LT  +++ TRY YSLFWGFQQISTLAGNQ PSYF+GEV FTM IIG+GLLLFA 
Sbjct:   447 YLKAVNLTNHSNLFTRYSYSLFWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFAL 506

Query:   486 LIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNED 545
             LIGNMQNFLQAL KR L+M+LRRRDVEQWM HRRLP+ +RR+VREAER+NWAATRGVNE+
Sbjct:   507 LIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEE 566

Query:   546 MLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGL 605
             +LF N+P+DLQR+IRRHLFKF+KKVRIF+LMDEPILDAI ERL+Q+TYI  S +L+RGGL
Sbjct:   567 LLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGL 626

Query:   606 IEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLC 665
             +EKMVFIVRG+MESIGEDG  + L EGD CGEELLTWCLE SSVN D  R R+P + LL 
Sbjct:   627 VEKMVFIVRGEMESIGEDGSVLPLYEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLS 686

Query:   666 NRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWR 725
             +R VRC+TNVEAFSL  AD+E+VTSLF+RFLRS RVQGAIRY+SPYWR RAA  IQVAWR
Sbjct:   687 SRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWR 746

Query:   726 YRKKRLNRADTSHS 739
             YR++RL+R  T  S
Sbjct:   747 YRRRRLHRLCTPQS 760
GO:0005216 "ion channel activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006811 "ion transport" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS
GO:0009624 "response to nematode" evidence=IEP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2090562 CNGC19 "cyclic nucleotide gated channel 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LD37CNG20_ARATHNo assigned EC number0.61580.94770.9253yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_122000082
SubName- Full=Putative uncharacterized protein; (785 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query746
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 2e-08
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 2e-07
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 0.001
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 24/122 (19%)

Query: 572 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESI-----GEDGIA 626
           +F+ +D+  L+ + + L ++ + +G  I+ +G   + +  ++ G +E       G + I 
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 627 VCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIE 686
             L  GD  GE  L      S+                   TVR LT+ E   L  +D  
Sbjct: 61  GFLGPGDLFGELALLGNGPRSA-------------------TVRALTDSELLVLPRSDFR 101

Query: 687 EV 688
            +
Sbjct: 102 RL 103

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 746
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0499 815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.54
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.33
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.26
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.24
cd00038115 CAP_ED effector domain of the CAP family of transc 99.24
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 99.22
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.2
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.17
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.1
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.09
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.06
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.05
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.05
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.04
COG2905 610 Predicted signal-transduction protein containing c 99.03
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.03
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.03
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 99.01
PLN02868 413 acyl-CoA thioesterase family protein 98.96
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.88
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 98.83
PRK09391230 fixK transcriptional regulator FixK; Provisional 98.81
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 98.74
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.68
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.66
PRK10537393 voltage-gated potassium channel; Provisional 98.13
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.84
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.63
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.23
PF04831153 Popeye: Popeye protein conserved region; InterPro: 97.19
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.16
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.11
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 96.56
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 96.45
PLN032231634 Polycystin cation channel protein; Provisional 96.0
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 95.54
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 95.46
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.38
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 95.31
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.14
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 91.86
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 91.08
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 90.2
KOG2301 1592 consensus Voltage-gated Ca2+ channels, alpha1 subu 87.71
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-91  Score=799.22  Aligned_cols=480  Identities=43%  Similarity=0.797  Sum_probs=438.0

Q ss_pred             CCeeecCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccCcceeeecCCcchhhHHHHHHHHHHHHHHHHhhhceeEe
Q 004529          192 VPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYV  271 (746)
Q Consensus       192 ~~~vI~P~S~~~~~Wd~~~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~~~~~~~~~~i~d~ifllDI~l~F~t~y~  271 (746)
                      ..+||+|+|++++.||.+++++++|+++++|++++|+..+++..|  +|+.....+.+++.++|++|++||++||||||+
T Consensus        66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv  143 (727)
T KOG0498|consen   66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV  143 (727)
T ss_pred             cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence            456999999999999999999999999999999999998888888  888889999999999999999999999999999


Q ss_pred             cCCccccCCCeEeecHHHHHHHhhhhhhHHHHhhhccccc--------------------------hHHHHHhhhhhhhh
Q 004529          272 APESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ--------------------------YIPRLYKFLPLFAG  325 (746)
Q Consensus       272 ~~~s~~~~~G~lV~d~k~Ia~~Ylk~~F~iDlis~iP~~~--------------------------~llRLlR~~rl~~~  325 (746)
                      +++|     -++|.||++||+||+++||++|++|++|+++                          |++||.|++++++.
T Consensus       144 ~~~s-----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r  218 (727)
T KOG0498|consen  144 DPSS-----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFAR  218 (727)
T ss_pred             CCCC-----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9854     3799999999999999999999999999987                          67888888888888


Q ss_pred             cccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcccCCcccccccccCCCCCCCCccccCcccc
Q 004529          326 QSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWK  404 (746)
Q Consensus       326 ~~~~-~~~~~~~~~~~i~~ll~~ll~~H~~aC~wyli~~~~~~~c~~~~c~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~  404 (746)
                      +++. +..++++|+....++++|+|++||.||+||++|..+...|+..+                               
T Consensus       219 ~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-------------------------------  267 (727)
T KOG0498|consen  219 LEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-------------------------------  267 (727)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-------------------------------
Confidence            8776 88899999998899999999999999999999998877777653                               


Q ss_pred             cccccCc-CcccccccccccchhhhhhhcccCCchHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHH
Q 004529          405 SWSGNQQ-ASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLF  483 (746)
Q Consensus       405 sW~~~~~-~~~c~~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~f  483 (746)
                      +|+.... ...|.. ..|+||+          .+++.+|++|+||+++||||+|||+++++|..|++|+|++|++|+++|
T Consensus       268 tw~~~l~~~~~~~~-~~~~fg~----------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~  336 (727)
T KOG0498|consen  268 TWLGSLGRLLSCYN-LSFTFGI----------YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLF  336 (727)
T ss_pred             ccccccccccccCc-ccccccc----------hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHH
Confidence            2333211 111221 1256776          467779999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCchhhHHHHHHHH
Q 004529          484 AFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL  563 (746)
Q Consensus       484 a~iig~i~~il~~~~~~~~~~~~~~~~v~~yM~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~~  563 (746)
                      |++||||+++++.+.++..+|+.+++++++||++|+||++||+||++|++|+|..++|+||+++|++||++||++|.+|+
T Consensus       337 A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL  416 (727)
T KOG0498|consen  337 AYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL  416 (727)
T ss_pred             HHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             HH-HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCC----eEEEcCCCCEEehh
Q 004529          564 FK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG----IAVCLSEGDACGEE  638 (746)
Q Consensus       564 ~~-~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g----~i~~l~~G~~fGe~  638 (746)
                      |. +++++|+|+++|+.++++|+.+++...|.|||+|++|||++++||||++|.+++...+|    ....|++||+|||+
T Consensus       417 ~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeE  496 (727)
T KOG0498|consen  417 CLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEE  496 (727)
T ss_pred             hHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchH
Confidence            99 99999999999999999999999999999999999999999999999999999998664    78999999999977


Q ss_pred             hhhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhhcChHHHhHHhhcCchhhhHHHH
Q 004529          639 LLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAI  718 (746)
Q Consensus       639 ~ll~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~l~~p~~~~~~r~~s~~~~~~a~~  718 (746)
                      .+++++            ..     ++++||+|+|.|+++.|+++||.+++++|+ .+++..+++.+|+++..||.+++.
T Consensus       497 l~~~~~------------~~-----p~t~TVralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~  558 (727)
T KOG0498|consen  497 LLTWCL------------DL-----PQTRTVRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAAC  558 (727)
T ss_pred             HHHHHh------------cC-----CCCceeehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhh
Confidence            776642            12     458999999999999999999999999995 788888999999999999999999


Q ss_pred             HHHHHHhHHHHHhhhhcCCC
Q 004529          719 VIQVAWRYRKKRLNRADTSH  738 (746)
Q Consensus       719 ~~q~~~~~~~~r~~~~~~~~  738 (746)
                      .+|.+|+++.+|+...+.+.
T Consensus       559 ~iq~a~r~~~~~~~~~~l~~  578 (727)
T KOG0498|consen  559 FIQAAWRRHIKRKGEEELAL  578 (727)
T ss_pred             hHHHHHHHHHHhhccchhhh
Confidence            99999999999997766555

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query746
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 2e-18
3ukn_A212 Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN 2e-09
3etq_A204 X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 6e-06
3u0z_A210 Tetramerization Dynamics Of The C-Terminus Underlie 7e-06
3u10_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-05
3ffq_A202 Hcn2i 443-640 Apo-State Length = 202 2e-05
2q0a_A200 Structure And Rearrangements In The Carboxy-Termina 2e-05
1q3e_A207 Hcn2j 443-645 In The Presence Of Cgmp Length = 207 3e-05
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 3e-05
3u11_A210 Tetramerization Dynamics Of The C-Terminus Underlie 4e-05
3otf_A220 Structural Basis For The Camp-Dependent Gating In H 6e-05
3bpz_A202 Hcn2-I 443-460 E502k In The Presence Of Camp Length 7e-05
4hbn_A205 Crystal Structure Of The Human Hcn4 Channel C-termi 2e-04
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 16/134 (11%)
Query: 567 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-- 624
           V++V +F  MDE +LDAICERL+   +   S ++  G  + +M+FI+RG++ES+  DG  
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 625 ----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSL 680
                   L EGD CG+ELLTW L+  S +       +P       RTV+ LT VEAF+L
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGS------NLPSS----TRTVKALTEVEAFAL 117
Query: 681 RAADIEEVTSLFAR 694
            A +++ V S F R
Sbjct: 118 IADELKFVASQFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 Back     alignment and structure
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 Back     alignment and structure
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 Back     alignment and structure
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 Back     alignment and structure
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 Back     alignment and structure
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 Back     alignment and structure
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 Back     alignment and structure
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query746
3ukn_A212 Novel protein similar to vertebrate potassium VOL 6e-61
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 6e-47
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 3e-46
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 1e-33
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 2e-33
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 8e-07
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-05
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 4e-06
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 5e-06
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 1e-05
3tnp_B 416 CAMP-dependent protein kinase type II-beta regula 2e-05
4din_B381 CAMP-dependent protein kinase type I-beta regulat 3e-05
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 3e-05
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 4e-05
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 4e-04
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 4e-04
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 7e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  202 bits (517), Expect = 6e-61
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 17/205 (8%)

Query: 494 LQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPE 553
            Q +  RR     R +D++ ++R  RLP+ L +++ E  +  W+   G++   L  + P+
Sbjct: 4   DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63

Query: 554 DLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIV 613
           +L+ +I  HL K + ++ +F       L ++   ++      G  ++ +G  ++ + F+ 
Sbjct: 64  ELRADIAMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVC 123

Query: 614 RGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLT 673
            G ME + ++ +   L +GD  G + LT         +  K           N  V+ LT
Sbjct: 124 SGSMEVLKDNTVLAILGKGDLIGSDSLTK-------EQVIKT----------NANVKALT 166

Query: 674 NVEAFSLRAADIEEVTSLFARFLRS 698
             +   +    + EV  L+  + + 
Sbjct: 167 YCDLQYISLKGLREVLRLYPEYAQK 191
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 746
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 6e-15
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 3e-11
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 5e-05
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 2e-04
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 2e-04
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 4e-04
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 0.004
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.0 bits (170), Expect = 6e-15
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 16/135 (11%)

Query: 566 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG- 624
            V++V +F  MDE +LDAICERL+   +   S ++  G  + +M+FI+RG++ES+  DG 
Sbjct: 7   GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66

Query: 625 -----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFS 679
                    L EGD CG+ELLTW L+  S +                RTV+ LT VEAF+
Sbjct: 67  RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPS----------STRTVKALTEVEAFA 116

Query: 680 LRAADIEEVTSLFAR 694
           L A +++ V S F R
Sbjct: 117 LIADELKFVASQFRR 131
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query746
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.97
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.68
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.63
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.62
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.58
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.58
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.54
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.53
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.52
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.48
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.4
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.32
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.27
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.2
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.15
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.13
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.03
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 98.92
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 98.9
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.68
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 97.96
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 97.14
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 92.92
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.7e-29  Score=220.23  Aligned_cols=182  Identities=24%  Similarity=0.364  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHCCCC
Q ss_conf             99799999999999999997899988999999999999863038995678720732347999999999-97431103699
Q 004529          498 VKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALM  576 (746)
Q Consensus       498 ~~~~~~~~~~l~~i~~ym~~~~lp~~Lr~rV~~Y~~y~w~~~~~~~e~~ll~~Lp~~Lr~eI~~~~~~-~l~~v~lF~~~  576 (746)
                      |+++.+|+++++.+++||+.+++|.+|+.||++||+|.| +.++.+++++++.||+.|+.++..+++. +++++|+|.++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~-~~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~   79 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA   79 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             925899999999999999984999999999999999986-5036659999987992234899999999998202477761


Q ss_pred             CHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99899999845020571699879724882467999992089999348737993899877203664101235554333234
Q 004529          577 DEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRY  656 (746)
Q Consensus       577 s~~~l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~~g~i~~l~~G~~fGe~~ll~~l~~~~~~~~~~~~  656 (746)
                      ++.++..|+..++...|.||++|+++|+.++.||||.+|.|+++..++....+++|++|||.+++.+             
T Consensus        80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~-------------  146 (193)
T d1q3ea_          80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR-------------  146 (193)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEECHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCEEEEEEECCCC-------------
T ss_conf             2999999999978876226843103588775005751205776217862146506536554202477-------------


Q ss_pred             CCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             5789744310299994529999961999999999959520596788677
Q 004529          657 RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI  705 (746)
Q Consensus       657 ~~pg~~~~r~~tV~Alt~~el~~L~~~df~~il~~~~~~l~~p~~~~~~  705 (746)
                          .  ++.++++|.++|+++.|++++|.+++..|      |.+...+
T Consensus       147 ----~--~~~~~~~a~~~~~l~~l~~~~f~~ll~~~------p~~~~~~  183 (193)
T d1q3ea_         147 ----G--RRTASVRADTYCRLYSLSVDNFNEVLEEY------PMMRRAF  183 (193)
T ss_dssp             ----S--BCSSEEEESSCEEEEEEEHHHHHHHHHHS------GGGHHHH
T ss_pred             ----C--CCCCCCEECCCEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_conf             ----7--42124224574699997699999999879------9999999
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure