Citrus Sinensis ID: 004582
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 744 | 2.2.26 [Sep-21-2011] | |||||||
| O23225 | 718 | U-box domain-containing p | yes | no | 0.865 | 0.896 | 0.348 | 1e-101 | |
| O48700 | 771 | U-box domain-containing p | no | no | 0.879 | 0.848 | 0.315 | 3e-84 | |
| Q9CAG5 | 782 | U-box domain-containing p | no | no | 0.905 | 0.861 | 0.320 | 4e-83 | |
| Q9C7G1 | 768 | U-box domain-containing p | no | no | 0.900 | 0.872 | 0.312 | 9e-79 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.564 | 0.594 | 0.251 | 3e-32 | |
| Q681N2 | 660 | U-box domain-containing p | no | no | 0.377 | 0.425 | 0.282 | 4e-24 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.358 | 0.408 | 0.296 | 2e-23 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.041 | 0.050 | 0.565 | 2e-22 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.142 | 0.160 | 0.428 | 3e-22 | |
| Q9SRT0 | 460 | U-box domain-containing p | no | no | 0.133 | 0.215 | 0.460 | 2e-21 |
| >sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=3 | Back alignment and function desciption |
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Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 243/698 (34%), Positives = 394/698 (56%), Gaps = 54/698 (7%)
Query: 16 TVKVHRLMCLELKTLINKISHIHSDIESARPGCTSGIHVLCSFHVAVDKSKLLIQYCSES 75
+ K+H MCLELK L+++I I DIE ARPGC+SGI LC H A+DK+K L+QYCSES
Sbjct: 12 SYKMHSSMCLELKRLVDRIMRIFPDIEDARPGCSSGIQTLCLLHNALDKTKQLLQYCSES 71
Query: 76 SKLYLAITADRIQMKFERVRNTLELCLSQIQNIVPSLLAAKVSDIIHDIRNAKFPLEPSE 135
SKLY+A+T D I + R + +LE CL+ I++IVP++L K+S I+ D+R+ + LE SE
Sbjct: 72 SKLYMAVTGDAILARGSRAKKSLEQCLNDIRSIVPTILEIKISQIVQDLRSTQLTLEFSE 131
Query: 136 DEAGKVLLALLHRGISASSFINQLELEALQLAALRLNITSPLALLIEKRSIKRLLQKICD 195
+EAGK + L+ + S+S+ + E++ AAL+L +++P A++ E+RS+K
Sbjct: 132 EEAGKAIRELMQKSTSSSASPD--EIKDFHYAALKLQLSTPEAIVTERRSLK-------- 181
Query: 196 TDTTRKKVLKCLLYLLRKYGELICK-HKTLS-THAVPKEPCHQSIEAQAKLGNEWDENPV 253
+IC+ HK S TH HQSI+ E
Sbjct: 182 ---------------------IICEDHKQNSFTH-------HQSIDDSLHANAAEAEASE 213
Query: 254 NESGVLEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVS 313
+G L PE+FKC++S +MYDPV+I+SG TFER+ IQKWF+ G+ +CP + +LD+ +
Sbjct: 214 EHNGTL--PEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFT 271
Query: 314 VTPNVAIKELISQWCLKHGISIPEPHSQPMPALLSSRKTSSSSSVASFGSSMDDLCLHVS 373
+ PNV +K IS+WC K+G+ + +P + + A S S S+ASFGSS+ ++ H S
Sbjct: 272 LKPNVELKSQISEWCAKNGLDVQDPARKHVKA---SNSIDFSVSIASFGSSLYNIPDH-S 327
Query: 374 NVSFSSSDTDHDLHPSNGKTDDGLSCASPLK--NANSHRYQSSMIRHGTDLTSLSKLASR 431
+S + ++ + + S+ +P++ ++ S + ++ L L +
Sbjct: 328 GISITDFNSSYSIDSSSYSKMSKGGYFTPMQRIDSASGAGDTDSSHSEIEIDPLCGLTNL 387
Query: 432 PWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDA--HNLCDAKAQKDGAEVL 489
PW +Q VE+++ + + ++ + +++PLI +LK+A N + K G ++L
Sbjct: 388 PWDAQIKVVEDVRSRFEHSTRAFRSMSPSKFLEPLITYLKNALERNGTAGEIIKGGLDLL 447
Query: 490 LAILSQSRDEMPLFHKDEICTFALFLDSEIM-EEALEIIEVLSHQQNYASELVASGIIPS 548
LA LS +R + ++ F++FL+SE++ EEAL I+EVLS+ + S++ +SG + S
Sbjct: 448 LAFLSGNRRAIESLEEEVFKMFSVFLESEVVAEEALNILEVLSNHPHGPSKITSSGSLSS 507
Query: 549 IIKFLDTGTRESRELAIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPILSSYCIKIIK 608
++K +++ +E A+ L NLSS I ++ LD KL L+ + + I I+K
Sbjct: 508 LLKIVESQAEHLQEQAMITLKNLSSSMEICLEMVSLDFIQKLTSFLQQKVFCKHSIIILK 567
Query: 609 ALCTSE-ARAAVAESNPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES- 666
LC++E R + E+ C+ SIA+LLE+ EEQE+ + +LL LC + +YC L E+
Sbjct: 568 NLCSTEKGRGCITETPDCLASIAELLESNVPEEQENAISILLQLCVQKIEYCCLVVREAT 627
Query: 667 -IIQCVVDISVNGNSRGKETAKELIMLLDHCKEDNASE 703
I ++ IS NG K +A EL+ L D E
Sbjct: 628 DIYSSLILISNNGTEEVKVSASELLRALVEVDSDKEEE 665
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 744 | ||||||
| 225458259 | 766 | PREDICTED: U-box domain-containing prote | 0.982 | 0.954 | 0.527 | 0.0 | |
| 224082872 | 735 | predicted protein [Populus trichocarpa] | 0.975 | 0.987 | 0.525 | 0.0 | |
| 147826820 | 812 | hypothetical protein VITISV_020770 [Viti | 0.982 | 0.900 | 0.504 | 0.0 | |
| 302142506 | 672 | unnamed protein product [Vitis vinifera] | 0.825 | 0.913 | 0.513 | 1e-172 | |
| 14149112 | 756 | bg55 [Bruguiera gymnorhiza] | 0.961 | 0.945 | 0.432 | 1e-157 | |
| 224094801 | 747 | predicted protein [Populus trichocarpa] | 0.970 | 0.966 | 0.44 | 1e-156 | |
| 224134268 | 760 | predicted protein [Populus trichocarpa] | 0.973 | 0.952 | 0.436 | 1e-153 | |
| 255561116 | 748 | ubiquitin-protein ligase, putative [Rici | 0.912 | 0.907 | 0.442 | 1e-151 | |
| 297735142 | 761 | unnamed protein product [Vitis vinifera] | 0.978 | 0.956 | 0.427 | 1e-145 | |
| 359476890 | 902 | PREDICTED: U-box domain-containing prote | 0.955 | 0.788 | 0.427 | 1e-142 |
| >gi|225458259|ref|XP_002281339.1| PREDICTED: U-box domain-containing protein 5-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/769 (52%), Positives = 524/769 (68%), Gaps = 38/769 (4%)
Query: 1 MGSDVAESVELPFYCTVKVHRLMCLELKTLINKISHIHSDIESARPGCTSGIHVLCSFHV 60
MGSD A VELP+YCT+KVHRL+CL+LK+ I++IS I S IESARP C +G+ LCS H
Sbjct: 1 MGSDTA-VVELPYYCTIKVHRLICLKLKSYIDRISQIFSAIESARPRCGTGMQALCSLHH 59
Query: 61 AVDKSKLLIQYCSESSKLYLAITADRIQMKFERVRNTLELCLSQIQNIVPSLLAAKVSDI 120
A+DK+KLLIQ C+ESSKLYLAITAD+I ++ ER+ N LE L Q+QN VP+LLAAK+S I
Sbjct: 60 AMDKAKLLIQNCTESSKLYLAITADKIVLRCERICNCLESSLRQLQNNVPTLLAAKISGI 119
Query: 121 IHDIRNAKFPLEPSEDEAGKVLLALLHRGISASSFINQLELEALQLAALRLNITSPLALL 180
+ D++ AKF +E ++DEAG+V+LAL+ +G+ S IN ELEA+Q+AA RLNI S +ALL
Sbjct: 120 VEDLKGAKFTVESADDEAGRVVLALVRQGMPDSESINISELEAIQIAASRLNIASHMALL 179
Query: 181 IEKRSIKRLLQKICDTDTTRKKVLKCLLYLLRKYGELICKHKTLSTHAVPKEPCHQSIEA 240
IEKRSIKRL+ K+ DT+ T+ K+LK LLYLLRKYG+ I T ST +QSIE
Sbjct: 180 IEKRSIKRLIDKVPDTNLTKMKILKYLLYLLRKYGDSIRSRNTESTTM------YQSIEQ 233
Query: 241 QAKLGNEWDENPVNESGVLEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHT 300
+ + E ++ V +PPEEFKC IS+RLMYDPVVIASG+T+ER WI KWFN G+
Sbjct: 234 EPHEESAIYETLADDFSVTKPPEEFKCPISMRLMYDPVVIASGQTYERFWITKWFNDGND 293
Query: 301 TCPKTHMRLDNVSVTPNVAIKELISQWCLKHGISIPEPHSQPMPALLSSRKTSSSSSVAS 360
TCPKTH +L +TPN +K LIS+WCLKHGISI +P SQ P L +K S S+S+AS
Sbjct: 294 TCPKTHEKLSQFFLTPNSTMKNLISRWCLKHGISISDPCSQQAPESLPLQKLSPSTSIAS 353
Query: 361 FGSSMDDLCLHVSNVSFSSSDTDH-----------------DLH------PSNG---KTD 394
F SS++ LCL S+VS S+DT+ LH PSN + D
Sbjct: 354 FASSLNGLCLQTSSVSLHSTDTNFPSNKLDIRMDILQTSSVSLHSTDTNFPSNKLDIRMD 413
Query: 395 DGLSCASPLKNANSHRYQSSMIRHGTDLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSR 454
+G + P NA+S QSS RHG + LSKLA+ PW SQC + N++ LKD+ Q+
Sbjct: 414 NGSAHELPQMNADSQGCQSSANRHGMNFAFLSKLAALPWESQCKEIGNVRDQLKDSIQAC 473
Query: 455 HLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSRDEMPLFHKDEICTFALF 514
H F +SY+KPLI+FLKDA + +AQ+DGA VLL L++ R EMP H+D I A F
Sbjct: 474 HSTFSSSYIKPLIRFLKDACENGNLQAQRDGALVLLYFLNKRRSEMPPLHEDAIYVLASF 533
Query: 515 LDSEIMEEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESRELAIKILCNLSSG 574
LDSEI EEAL I+EVLS Q++Y SE+VASG++PSIIKFLDT ++ LA+KILCNLSS
Sbjct: 534 LDSEITEEALAIMEVLSCQRHYKSEIVASGVLPSIIKFLDTKMKKFHVLALKILCNLSSN 593
Query: 575 DNIVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALC-TSEARAAVAESNPCIDSIAKLL 633
++ YHI+YLDC KL D L+ YCIKI + LC EAR VAE+N CID IAK+L
Sbjct: 594 HDMGYHIVYLDCIPKLAPFFVDHKLAGYCIKIFRNLCDIEEARITVAETNQCIDFIAKIL 653
Query: 634 ETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLL 693
E G+ EEQE ++VLLSLCH + +Y QL + I+Q + IS+NGN+RG+E AKEL+ LL
Sbjct: 654 ENGSEEEQEDALEVLLSLCH-YREYGQLFREDHIVQSLFHISLNGNARGQEIAKELLQLL 712
Query: 694 DHCKEDNASECSTLRA---DMLHDSSSHHTDNKTSSVASRFLGRKIARF 739
+ K D ECS+ + +++ D + K ASR LG+KI RF
Sbjct: 713 RNIKNDPVLECSSSSSTSDEVIQDFVINSKGKKLPLKASRILGKKILRF 761
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082872|ref|XP_002306872.1| predicted protein [Populus trichocarpa] gi|222856321|gb|EEE93868.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147826820|emb|CAN75512.1| hypothetical protein VITISV_020770 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|302142506|emb|CBI19709.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|14149112|dbj|BAB55653.1| bg55 [Bruguiera gymnorhiza] | Back alignment and taxonomy information |
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| >gi|224094801|ref|XP_002310241.1| predicted protein [Populus trichocarpa] gi|222853144|gb|EEE90691.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224134268|ref|XP_002327797.1| predicted protein [Populus trichocarpa] gi|222836882|gb|EEE75275.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255561116|ref|XP_002521570.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223539248|gb|EEF40841.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297735142|emb|CBI17504.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359476890|ref|XP_002266200.2| PREDICTED: U-box domain-containing protein 5 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 744 | ||||||
| TAIR|locus:2115365 | 718 | AT4G36550 [Arabidopsis thalian | 0.642 | 0.665 | 0.314 | 1.4e-99 | |
| TAIR|locus:2008813 | 782 | AT1G67530 [Arabidopsis thalian | 0.455 | 0.433 | 0.387 | 8.3e-83 | |
| TAIR|locus:2032472 | 771 | AT1G24330 [Arabidopsis thalian | 0.446 | 0.430 | 0.388 | 1.9e-81 | |
| TAIR|locus:2010424 | 768 | PUB45 "plant U-box 45" [Arabid | 0.286 | 0.277 | 0.368 | 7.1e-73 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.111 | 0.125 | 0.469 | 1.8e-32 | |
| TAIR|locus:2162276 | 660 | PUB15 "Plant U-Box 15" [Arabid | 0.213 | 0.240 | 0.392 | 1.3e-31 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.102 | 0.124 | 0.565 | 1.7e-28 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.115 | 0.140 | 0.465 | 1.8e-28 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.123 | 0.132 | 0.436 | 2.2e-28 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.115 | 0.121 | 0.450 | 1.2e-27 |
| TAIR|locus:2115365 AT4G36550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 613 (220.8 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 158/503 (31%), Positives = 265/503 (52%)
Query: 212 RKYGELICK-HKTLS-THAVPKEPCHQSIEAQAKLGNEWDENPVNESGVLEPPEEFKCSI 269
R+ ++IC+ HK S TH HQSI+ E +G L PE+FKC++
Sbjct: 177 RRSLKIICEDHKQNSFTH-------HQSIDDSLHANAAEAEASEEHNGTL--PEKFKCTL 227
Query: 270 SLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKELISQWCL 329
S +MYDPV+I+SG TFER+ IQKWF+ G+ +CP + +LD+ ++ PNV +K IS+WC
Sbjct: 228 SRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLKPNVELKSQISEWCA 287
Query: 330 KHGISIPEPHSQPMPALLXXXXXXXXXXXXXXXXXMDDLCLHVSNVSFSSSDTDHDLHPS 389
K+G+ + +P + + A + D H S +S + ++ + + S
Sbjct: 288 KNGLDVQDPARKHVKASNSIDFSVSIASFGSSLYNIPD---H-SGISITDFNSSYSIDSS 343
Query: 390 N-GKTDDGLSCASPLKNANSHRYQSSM-IRHGT-DLTSLSKLASRPWGSQCDAVENIKKL 446
+ K G +P++ +S H ++ L L + PW +Q VE+++
Sbjct: 344 SYSKMSKG-GYFTPMQRIDSASGAGDTDSSHSEIEIDPLCGLTNLPWDAQIKVVEDVRSR 402
Query: 447 LKDNGQSRHLAFLNSYVKPLIKFLKDA--HNLCDAKAQKDGAEVLLAILSQSRDEMPLFH 504
+ + ++ + +++PLI +LK+A N + K G ++LLA LS +R +
Sbjct: 403 FEHSTRAFRSMSPSKFLEPLITYLKNALERNGTAGEIIKGGLDLLLAFLSGNRRAIESLE 462
Query: 505 KDEICTFALFLDSEIM-EEALEIIEVLSHQQNYASELVASGIIPSIIKFLDTGTRESREL 563
++ F++FL+SE++ EEAL I+EVLS+ + S++ +SG + S++K +++ +E
Sbjct: 463 EEVFKMFSVFLESEVVAEEALNILEVLSNHPHGPSKITSSGSLSSLLKIVESQAEHLQEQ 522
Query: 564 AIKILCNLSSGDNIVYHILYLDCTSKLVRLLEDPILSSYCIKIIKALCTSE-ARAAVAES 622
A+ L NLSS I ++ LD KL L+ + + I I+K LC++E R + E+
Sbjct: 523 AMITLKNLSSSMEICLEMVSLDFIQKLTSFLQQKVFCKHSIIILKNLCSTEKGRGCITET 582
Query: 623 NPCIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTES--IIQCVVDISVNGNS 680
C+ SIA+LLE+ EEQE+ + +LL LC + +YC L E+ I ++ IS NG
Sbjct: 583 PDCLASIAELLESNVPEEQENAISILLQLCVQKIEYCCLVVREATDIYSSLILISNNGTE 642
Query: 681 RGKETAKELIMLLDHCKEDNASE 703
K +A EL+ L D E
Sbjct: 643 EVKVSASELLRALVEVDSDKEEE 665
|
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| TAIR|locus:2008813 AT1G67530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O23225 | PUB5_ARATH | 6, ., 3, ., 2, ., - | 0.3481 | 0.8655 | 0.8969 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 744 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 1e-18 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 3e-14 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-18
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 264 EFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTPNVAIKEL 323
EF C ISL +M DPV++ SG+T+ER I+KW H T P T L + + PN+A+K
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLL-SHGTDPVTGQPLTHEDLIPNLALKSA 59
Query: 324 ISQW 327
I +W
Sbjct: 60 IQEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 744 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.93 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.92 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.9 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.89 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.87 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.85 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.83 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.81 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.74 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.73 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.69 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.6 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.36 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.36 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.32 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.2 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.2 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.14 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.14 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.09 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.08 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.08 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.04 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.94 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 98.92 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.83 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.83 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.77 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.72 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.72 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.71 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.7 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.65 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.64 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.61 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.57 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.53 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.46 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.33 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.3 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.29 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.29 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.26 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.26 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.25 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 98.21 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.19 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.16 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.16 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.15 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 98.13 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.12 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.07 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.06 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.05 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.04 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.03 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.95 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.92 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 97.9 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.9 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 97.88 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 97.83 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.83 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.81 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.79 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.78 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.74 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.74 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.63 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.63 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.63 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.6 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.58 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.56 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.52 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.48 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.47 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.4 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.37 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.31 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.3 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.28 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.23 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.21 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.21 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.21 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 97.2 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 97.19 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.16 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.14 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.03 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.02 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.98 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 96.95 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.78 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.75 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.62 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.41 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.38 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.37 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.36 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.35 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.26 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.22 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.17 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.11 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.11 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.05 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.05 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.04 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.02 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.97 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 95.9 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.87 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 95.86 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 95.78 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.77 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 95.75 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.66 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.65 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 95.54 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 95.52 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 95.46 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.43 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.4 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 95.38 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 95.29 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.22 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.98 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.84 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 94.83 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 94.79 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.71 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 94.71 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 94.6 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 94.5 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 94.49 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.43 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 94.43 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 94.42 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.26 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.23 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.22 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 94.15 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 94.13 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 93.96 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.84 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 93.76 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 93.74 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 93.61 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 93.48 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.44 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 93.34 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 93.3 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 93.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 92.7 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 92.47 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 92.41 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 92.33 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 92.28 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.24 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 91.92 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 91.86 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 91.71 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 91.48 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.44 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 90.88 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 90.53 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 90.16 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 90.15 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 89.92 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.76 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 89.72 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 89.71 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.57 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 89.51 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 89.3 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 88.99 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 88.87 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 88.83 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 88.33 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 87.86 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 87.81 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 87.78 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 87.6 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 87.58 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 87.43 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 87.14 | |
| COG5627 | 275 | MMS21 DNA repair protein MMS21 [DNA replication, r | 87.14 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 87.04 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 86.91 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 86.54 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 86.49 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 86.14 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 85.35 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 85.02 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 84.91 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 84.42 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 84.2 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 84.1 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 83.62 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 83.53 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.32 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 81.93 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 81.91 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 81.71 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 81.4 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 81.12 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 80.59 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 80.54 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.35 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 80.23 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 80.21 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=277.87 Aligned_cols=271 Identities=17% Similarity=0.173 Sum_probs=241.4
Q ss_pred cHHHHHhhcCC--CHHHHHHHHHHHHHHhhhcchhhHHHhh-CCChHHHHHHhcccccCCCHHHHHHHHHHHHHHhcCCC
Q 004582 421 DLTSLSKLASR--PWGSQCDAVENIKKLLKDNGQSRHLAFL-NSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQSR 497 (744)
Q Consensus 421 ~~~ll~~L~s~--~~e~q~~Al~~Lr~Lak~~~~~r~~i~~-~G~I~~LV~lL~~~~~~~d~~~q~~A~~~L~nLs~~~~ 497 (744)
+..++..|.++ +.+.|+.|+..|+.+++.++++|..+++ .|+||.|+.+|++ ++..+|++|+.+|.+++.++.
T Consensus 15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCHH
Confidence 45788999977 7899999999999999999999999985 9999999999988 789999999999999999999
Q ss_pred CCcccccccchHHHHHhhcchh---HHHHHHHHHHhccC---hhhhHHHH-hcCCchhhhcccccCCH---HHHHHHHHH
Q 004582 498 DEMPLFHKDEICTFALFLDSEI---MEEALEIIEVLSHQ---QNYASELV-ASGIIPSIIKFLDTGTR---ESRELAIKI 567 (744)
Q Consensus 498 nk~~iv~~Gai~~Lv~lL~s~~---~e~A~~~L~~Ls~~---~~~k~~I~-~~G~Ip~Lv~lL~s~~~---~~k~~A~~a 567 (744)
++..++..|+|++|+.+|+++. .+.|+++|++|+.+ ++++..|+ ..|+||+|+.+|++++. .+++.|+.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999999999999998864 47899999999987 44565554 79999999999999853 356778899
Q ss_pred HHHhcCCcchHHH-HHhcCCcHhHHHHhcC--ccHHHHHHHHHHHhc--CHHHHHHHHhhCCcHHHHHHHHcCC-CHHHH
Q 004582 568 LCNLSSGDNIVYH-ILYLDCTSKLVRLLED--PILSSYCIKIIKALC--TSEARAAVAESNPCIDSIAKLLETG-TREEQ 641 (744)
Q Consensus 568 L~nLs~~~~n~~~-iv~aG~v~~Lv~lL~~--~~l~~~al~~L~nLa--~~e~~~~i~~~~g~V~~Lv~lL~~~-s~~~~ 641 (744)
|+||+.+++|+.. ++++|+||.|+.+|.+ +.++..|+++|.+++ +++++..+++ .|+||.|+++|+++ ++.+|
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VR 249 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVR 249 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHH
Confidence 9999999999865 5899999999999975 468899999999888 5889999999 69999999999865 56999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhhcCCH---------HHHHHHHHHHHHhhhc
Q 004582 642 EHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNS---------RGKETAKELIMLLDHC 696 (744)
Q Consensus 642 e~A~~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~~s~---------~~r~~A~~lL~~L~~~ 696 (744)
++|+++|.+||+++.+++..+.+.|++|.|++++...+. ..++.|.++|.++.+.
T Consensus 250 E~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 250 AEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999986553 4589999999998754
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 744 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 2e-18 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-35
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 257 GVLEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP 316
G E PE F+C ISL LM DPV++++G+T+ER IQKW +AGH TCPK+ L + +TP
Sbjct: 1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60
Query: 317 NVAIKELISQWCLKHGI 333
N +K LI+ WC +GI
Sbjct: 61 NYVLKSLIALWCESNGI 77
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 744 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 1e-19 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 6e-15 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 8e-10 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 2e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 7e-06 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-05 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.001 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 2e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 3e-04 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 0.002 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.004 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 81.3 bits (200), Expect = 1e-19
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 257 GVLEPPEEFKCSISLRLMYDPVVIASGKTFERVWIQKWFNAGHTTCPKTHMRLDNVSVTP 316
G E PE F+C ISL LM DPV++++G+T+ER IQKW +AGH TCPK+ L + +TP
Sbjct: 1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60
Query: 317 NVAIKELISQWCLKHGI 333
N +K LI+ WC +GI
Sbjct: 61 NYVLKSLIALWCESNGI 77
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 744 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.94 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.94 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.94 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.93 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.85 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.82 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.81 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.81 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.78 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.41 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.36 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.32 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.26 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.96 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.7 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.69 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.67 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.65 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.56 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.52 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.47 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.41 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.37 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.33 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.3 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.21 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.17 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.11 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.86 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.85 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 97.84 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.82 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 97.79 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.59 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.37 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.06 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 96.81 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.41 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.29 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.07 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.67 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.15 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.6e-27 Score=187.07 Aligned_cols=265 Identities=13% Similarity=0.133 Sum_probs=223.6
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC-CCC
Q ss_conf 2889985139998999999999999761050023778607972879999615235799999999999999974499-987
Q 004582 421 DLTSLSKLASRPWGSQCDAVENIKKLLKDNGQSRHLAFLNSYVKPLIKFLKDAHNLCDAKAQKDGAEVLLAILSQS-RDE 499 (744)
Q Consensus 421 ~~~ll~~L~s~~~e~q~~Al~~Lr~Lak~~~~~r~~i~~~G~I~~Lv~lL~~~~~~~d~~~q~~A~~~Ll~L~~~~-~nk 499 (744)
.+.++..+.+.+.+++..++..+.+++.... ......|+++.|++++++ .+..+++.++.+|.+++.++ .++
T Consensus 229 ~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~---~~~~~~~~i~~Lv~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~ 301 (529)
T d1jdha_ 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNK 301 (529)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT---TCSCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC---CHHHHHHCCHHHHHHCCC----CCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 3469998625401555301567775043211---025664010144541245----428899999998875012203788
Q ss_pred CCCCCCCCHHHHHHHHCC-----HHHHHHHHHHHHHCCCHH----HHHHHHHCCCCHHHHCCCCCCCH-HHHHHHHHHHH
Q ss_conf 522345434889994212-----249999999998413801----26899954984113101225899-89999999999
Q 004582 500 MPLFHKDEICTFALFLDS-----EIMEEALEIIEVLSHQQN----YASELVASGIIPSIIKFLDTGTR-ESRELAIKILC 569 (744)
Q Consensus 500 ~~i~~~Gai~~Lv~lL~s-----~~~e~Al~~L~~Ls~~~~----~k~~I~~~g~Ip~Lv~lL~s~~~-~~k~~A~~aL~ 569 (744)
..+.+.|+++.|+..+.. ...+.++.+|.+++.... .+..+...|+++.|+.++..++. ..+..++.+|.
T Consensus 302 ~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~ 381 (529)
T d1jdha_ 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 381 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88887500789999998400111378899988500220000000356667764561247898715312789999999875
Q ss_pred HHCCCCCHHHHHHHCCCCHHHHHHHCCC------------------------CHHHHHHHHHHHHC-CHHHHHHHHHHCC
Q ss_conf 8337961399997518937689970496------------------------17999999999825-9988999994199
Q 004582 570 NLSSGDNIVYHILYLDCTSKLVRLLEDP------------------------ILSSYCIKIIKALC-TSEARAAVAESNP 624 (744)
Q Consensus 570 nLs~~~~n~~~iv~~G~I~~Lv~lL~~~------------------------~l~~~al~iL~nLa-~~e~~~~i~~~~g 624 (744)
|++.+++++..+.+.|+++.|+++|.+. .+.+.++.+|.+++ .+.++..+.+ .|
T Consensus 382 ~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~-~~ 460 (529)
T d1jdha_ 382 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG-LN 460 (529)
T ss_dssp HHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHH-TT
T ss_pred HCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH-CC
T ss_conf 00003566666653265799999986678899999986034677641213199999999999998449888999997-88
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 4999999872899999999999999981189898899985994999999830699789999999999933
Q 004582 625 CIDSIAKLLETGTREEQEHIVDVLLSLCHEHTKYCQLANTESIIQCVVDISVNGNSRGKETAKELIMLLD 694 (744)
Q Consensus 625 ~I~~Lv~lL~~~s~~~~e~A~~iL~~Lc~~~~~~~~~v~~~G~i~~Lv~L~~~~s~~~k~~A~~lL~~l~ 694 (744)
+++.|+.+|.++++.++..|+.+|.+|+.. ...+..+...|+++.|++++.++++.+++.|..+|+.|+
T Consensus 461 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls 529 (529)
T d1jdha_ 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 899999986799989999999999998659-466999998888999999857999999999999999749
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|