Citrus Sinensis ID: 004610
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | 2.2.26 [Sep-21-2011] | |||||||
| Q66GI4 | 572 | Proteinaceous RNase P 1, | yes | no | 0.502 | 0.652 | 0.536 | 1e-105 | |
| F4JKB6 | 576 | Proteinaceous RNase P 3 O | no | no | 0.486 | 0.626 | 0.443 | 6e-90 | |
| Q680B9 | 528 | Proteinaceous RNase P 2 O | no | no | 0.486 | 0.683 | 0.443 | 4e-83 | |
| O15091 | 583 | Mitochondrial ribonucleas | yes | no | 0.369 | 0.469 | 0.211 | 8e-06 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.206 | 0.242 | 0.259 | 8e-05 | |
| P0C896 | 576 | Pentatricopeptide repeat- | no | no | 0.125 | 0.161 | 0.268 | 0.0001 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.140 | 0.201 | 0.25 | 0.0002 | |
| Q9ZUA2 | 559 | Pentatricopeptide repeat- | no | no | 0.163 | 0.216 | 0.256 | 0.0003 | |
| Q8L6Y3 | 593 | Pentatricopeptide repeat- | no | no | 0.123 | 0.155 | 0.27 | 0.0003 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.103 | 0.127 | 0.301 | 0.0004 |
| >sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 267/382 (69%), Gaps = 9/382 (2%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHT 719
P NRAL+EKWKNA ALYATP GSNDD YWLYAA+ KCLLVTNDEMRDH
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDD---------WYWLYAAVSCKCLLVTNDEMRDHL 499
Query: 720 FQLLGNDFFPRWKERHQVSESL 741
FQLLGN FFPRWKE+HQV S+
Sbjct: 500 FQLLGNSFFPRWKEKHQVRISV 521
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Arabidopsis thaliana (taxid: 3702) |
| >sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (851), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 171/386 (44%), Positives = 236/386 (61%), Gaps = 25/386 (6%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVT 711
R+ ++ P +R L+E+W N + LYATP GSNDD YWLYAA K KCLLVT
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDD---------WYWLYAAAKLKCLLVT 497
Query: 712 NDEMRDHTFQLLGNDFFPRWKERHQV 737
NDEMRDH F+LL N FF +WKERHQV
Sbjct: 498 NDEMRDHIFELLSNSFFQKWKERHQV 523
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 171/386 (44%), Positives = 240/386 (62%), Gaps = 25/386 (6%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVT 711
R+ ++ P +R L+E+W + LYATP GSNDD YWLYAA K KCLLVT
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDD---------WYWLYAAAKLKCLLVT 438
Query: 712 NDEMRDHTFQLLGNDFFPRWKERHQV 737
NDEMRDH F+LLG+ FF +WKERHQV
Sbjct: 439 NDEMRDHIFELLGSTFFQKWKERHQV 464
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 122/335 (36%), Gaps = 61/335 (18%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 337
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 338 ----------QFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKF--K 706
R+ + Q + E K A +A DD + D+ + LYA +
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFA------DDISEDDP----FLLYATLHSGNH 492
Query: 707 CLLVTNDEMRDHTFQLL---GNDFFPRWKERHQVS 738
C +T D MRDH L F +W++ HQ++
Sbjct: 493 CRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLA 527
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Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends. Homo sapiens (taxid: 9606) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ + ++E+M + MN + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA V M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Y3|PP396_ARATH Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF----DMVKRMKSLGINPRLRSY 425
+ E++++M VP + + R S G+ A+ DMVKR G+NP + +Y
Sbjct: 283 QALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKR----GVNPDVFTY 338
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+S C G D+AC + M GV P++ + +++
Sbjct: 339 NTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQ 378
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++K MK G+ P SY P ++ FC G +D A E M+ G P+
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D+ + KL
Sbjct: 407 NTVLATLCKNGKADQALEIFGKL 429
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| 359484351 | 816 | PREDICTED: pentatricopeptide repeat-cont | 0.859 | 0.781 | 0.616 | 0.0 | |
| 297738805 | 751 | unnamed protein product [Vitis vinifera] | 0.805 | 0.796 | 0.627 | 0.0 | |
| 255546443 | 745 | multidrug resistance pump, putative [Ric | 0.777 | 0.774 | 0.626 | 0.0 | |
| 356527775 | 724 | PREDICTED: pentatricopeptide repeat-cont | 0.642 | 0.658 | 0.610 | 0.0 | |
| 449465334 | 633 | PREDICTED: proteinaceous RNase P 1, chlo | 0.765 | 0.897 | 0.595 | 0.0 | |
| 357520987 | 668 | Pentatricopeptide repeat-containing prot | 0.649 | 0.721 | 0.588 | 0.0 | |
| 357520951 | 702 | Pentatricopeptide repeat-containing prot | 0.649 | 0.686 | 0.588 | 1e-180 | |
| 224119796 | 461 | predicted protein [Populus trichocarpa] | 0.494 | 0.796 | 0.754 | 1e-165 | |
| 413936385 | 684 | hypothetical protein ZEAMMB73_755879 [Ze | 0.695 | 0.754 | 0.503 | 1e-161 | |
| 218190470 | 719 | hypothetical protein OsI_06719 [Oryza sa | 0.657 | 0.678 | 0.544 | 1e-157 |
| >gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/696 (61%), Positives = 502/696 (72%), Gaps = 58/696 (8%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTM-------NSTELGDSRD-----------MDNNGQLDYGS-----SP 287
+G R+LD S+ + E GD+ + NN Y + SP
Sbjct: 176 TGSRSLDMLSPSSEVRGGVSEDLAEFGDTSKKNFGGPESKIPVSNNAMSVYSTKIHQNSP 235
Query: 288 --MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345
+++ S DDLD + E + L Q SN + NSQLL+G+ +L +G DD + KK
Sbjct: 236 KKVLNSNRSAFEVAKDDLDGSITEMDKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKK 295
Query: 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
+ DN EIR+SED KKYA +RGFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDM
Sbjct: 296 E---DN----EIRVSEDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDM 348
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFDMVK+MK LGINPRLRSYGPALS FCNNGD++KA VEEHMLEHGVYPEEPELEALLR
Sbjct: 349 AFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLR 408
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V +EAGK D+VYY+LHKLRTSVR+VS STA++I KWF S AA GK W++ LI + +
Sbjct: 409 VGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIV 468
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
N GGGWHG GWLGKGKW VSHT VG D LC CCGEKLA IDLDP ETEKFAESVASIAIK
Sbjct: 469 NGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIK 528
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
RE+NSSFQKFQKWLDYYGP+EAVVDAANVGL+SQR F P++VNA+VNGIRQ PSKKWPL
Sbjct: 529 REKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPL 588
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKF 705
I+LHN+RITG KMD+P NRALIEKWKNADALY TPTGSNDD YWLYAAIKF
Sbjct: 589 IILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDW---------YWLYAAIKF 639
Query: 706 KCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVSESL 741
KCL+VTNDEMRDH FQLLGNDFFP+WKERHQV S
Sbjct: 640 KCLIVTNDEMRDHIFQLLGNDFFPKWKERHQVHFSF 675
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/671 (62%), Positives = 486/671 (72%), Gaps = 73/671 (10%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+G RT FEV+ DDLD + E
Sbjct: 176 TGSRT---FEVAK-------------------------------------DDLDGSITEM 195
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
+ L Q SN + NSQLL+G+ +L +G DD + KK+ DN EIR+SED KKYA +R
Sbjct: 196 DKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKKE---DN----EIRVSEDFKKYALRR 248
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
GFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDMAFDMVK+MK LGINPRLRSYGPALS
Sbjct: 249 GFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALS 308
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
FCNNGD++KA VEEHMLEHGVYPEEPELEALLRV +EAGK D+VYY+LHKLRTSVR+V
Sbjct: 309 AFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQV 368
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S STA++I KWF S AA GK W++ LI + + N GGGWHG GWLGKGKW VSHT VG
Sbjct: 369 SHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVG 428
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
D LC CCGEKLA IDLDP ETEKFAESVASIAIKRE+NSSFQKFQKWLDYYGP+EAVVD
Sbjct: 429 ADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVD 488
Query: 611 AANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKW 670
AANVGL+SQR F P++VNA+VNGIRQ PSKKWPLI+LHN+RITG KMD+P NRALIEKW
Sbjct: 489 AANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKW 548
Query: 671 KNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPR 730
KNADALY TPTGSNDD YWLYAAIKFKCL+VTNDEMRDH FQLLGNDFFP+
Sbjct: 549 KNADALYTTPTGSNDDW---------YWLYAAIKFKCLIVTNDEMRDHIFQLLGNDFFPK 599
Query: 731 WKERHQVSESL 741
WKERHQV S
Sbjct: 600 WKERHQVHFSF 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis] gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/615 (62%), Positives = 464/615 (75%), Gaps = 38/615 (6%)
Query: 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201
K K K ++ ++ + +ME++ KV+ K SK++K D ++ + R+ELD C
Sbjct: 6 KGATKERKYMDNQLISGRMEKKPRKGSDNKVKEEKSGKWSKRNKGD-PQEVKFRLELDKC 64
Query: 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261
KRGDVM AI+LYD AQREGIK+GQYHY VLLYLCSSAA GVV+P KSG G R ++ V
Sbjct: 65 CKRGDVMAAIQLYDLAQREGIKMGQYHYTVLLYLCSSAAAGVVQPGKSGRGGRASNSLAV 124
Query: 262 STMNST-------ELGDSRDMDN-----------NGQLDYGSSP-MIDKLESNSSYRFDD 302
S S+ EL D D+D N +D G +P DK+E SS RF+D
Sbjct: 125 SDEVSSASVVEFRELRDKNDVDATESDTKILNNVNKVIDSGRNPGSKDKMELKSSNRFND 184
Query: 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362
DST NE++NL Q N Q L+ S + D + D + I +SED
Sbjct: 185 SDSTSNERKNLSQIPIVVSDSNYQQLECLSFPAKNNDGKY---------HDGNGILVSED 235
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KKYA +RGFEIYEKMC+D++PMNEA+LTAV R+AMSMG+GDMAFDMVK+MK LG+NPRL
Sbjct: 236 IKKYALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNPRL 295
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
RSYGPAL+ FC++GD DKA +VE+HML+HGV+PEEPELEALLRVSVEAGKGD+VYYLLHK
Sbjct: 296 RSYGPALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLLHK 355
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
LRTSVRKVSPSTA++I +WF SK A+R+GK KW++ ++K+ + N GGGWHG GWLGKGKW
Sbjct: 356 LRTSVRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKGKW 415
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
VS ++VG DA CK CG+KLA IDLDP ETE FAESVASIAIKRE++SSFQKFQKWLDYY
Sbjct: 416 TVSCSSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLDYY 475
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
GPFEAVVD ANVGL Q+ F P+++NA+ NGIRQK PSKKWPLIVLHNRR+TGHKMD+PV
Sbjct: 476 GPFEAVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDEPV 535
Query: 663 NRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQL 722
N++L+EKWK+ADALYATPTGSNDD YWLYAAIKFKCL+VTNDEMRDHTFQL
Sbjct: 536 NKSLVEKWKHADALYATPTGSNDDW---------YWLYAAIKFKCLIVTNDEMRDHTFQL 586
Query: 723 LGNDFFPRWKERHQV 737
LGNDFFP+WKERHQV
Sbjct: 587 LGNDFFPKWKERHQV 601
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/552 (61%), Positives = 402/552 (72%), Gaps = 75/552 (13%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +L+ LDMCSKRGDVMGA+ LYD A EG+KLGQ+HY VLLYLCSSAAVGVV+PAKSG
Sbjct: 106 EVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSG 165
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
SG RTL+ S + S E+ N FD
Sbjct: 166 SGARTLN----SHVYSNEV------------------------PNEGTHFD--------- 188
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQ 369
LDG++ L +++ + DEI L SED K+YA Q
Sbjct: 189 -----------------LDGKAELNS-----------DLNSTEKDEILLVSEDVKRYALQ 220
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
RGFE+Y+ MCLD+V MNEA+LTAV RMAMSMGDGD AF+MV++MK LGI+PRLRSYGPAL
Sbjct: 221 RGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPAL 280
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
FCNNG++DKA +VE+HML+HGVYPEEPELEALLRVSV AG D+VYY+LHKLR+ VRK
Sbjct: 281 FTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRK 340
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
VSP+T+ +I WF SK+A+R+GK+KW+E LI++ +EN GGGWHG GWLGKGKW HTT+
Sbjct: 341 VSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTI 400
Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
G D +CKCC +L IDLDP+ETE FA+SVAS+A+ RE+ S+FQKFQKWLDY GPFEAVV
Sbjct: 401 GKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVV 460
Query: 610 DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEK 669
DAANVGL+ Q F P ++NAV N IRQ+ PSKK+PLI+LHN+RI G KMD+P+NRALI+K
Sbjct: 461 DAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDK 520
Query: 670 WKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFP 729
W NADALYATPTGSNDD YWLYAAIKF+CLLVTNDEMRDH FQLLGNDFFP
Sbjct: 521 WNNADALYATPTGSNDDW---------YWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFP 571
Query: 730 RWKERHQVSESL 741
+WKERHQV S
Sbjct: 572 KWKERHQVRFSF 583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/613 (59%), Positives = 437/613 (71%), Gaps = 45/613 (7%)
Query: 129 MSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDR 188
M G S L++ +K S+ D K++++ K + +EKG K K +
Sbjct: 1 MGDGISFLKTSTDSASLKVSR------DGGKIKEKR------KGNQVVEEKG-KLLKGNN 47
Query: 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248
F R LDMCSK GD +GAI+LY+ AQ+EGI L QYHY V+LYLCSSAA+GV++PAK
Sbjct: 48 ETPF--RANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCSSAALGVIQPAK 105
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
SG G +T + +S + S E N LD S + +Y +L ST N
Sbjct: 106 SGYGNQTSISLTLSKVGSYE--------NPIILDEQHSTKTSYVSKGGNYGRTEL-STEN 156
Query: 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368
++ N S+G ++D + N+ + K W +D + I + ED KKYA
Sbjct: 157 DRSN----SDG-------MMDNKENIFH-TNGSMVPKAWILDEKSHSNILVDEDFKKYAL 204
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ GFEIYEKMC + +PMNEA+LT+V RMAMSMGDGD AFDMVK+MK LG+NPRLRSYGPA
Sbjct: 205 ETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNPRLRSYGPA 264
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
LS FC NG ++KA SVE+HMLEHGVYPEEPEL ALLRVS+ A ++VYYLLHKLRTSVR
Sbjct: 265 LSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLLHKLRTSVR 324
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V PSTAD+I WF SK+AAR+GK K + +IK + N GGGWHGLGWLG+GKW VS T
Sbjct: 325 QVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRGKWSVSSTN 384
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VG D LCK CGEKLA IDLDPIETE FAESVA+I +RE+NSSFQKFQKWL+YYGPFEAV
Sbjct: 385 VGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLEYYGPFEAV 444
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGL+SQR F P++VN + NGIRQK PSKKWPLI+LHNRRITG KM++PVN+ LIE
Sbjct: 445 IDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEEPVNKTLIE 504
Query: 669 KWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 728
KWKNADALYATPTGSNDD YWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFF
Sbjct: 505 KWKNADALYATPTGSNDDW---------YWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFF 555
Query: 729 PRWKERHQVSESL 741
PRWKERHQV S
Sbjct: 556 PRWKERHQVHFSF 568
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/551 (58%), Positives = 387/551 (70%), Gaps = 69/551 (12%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 75 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 117
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 118 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 149
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 150 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 194
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494
Query: 667 IEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 726
+++W NA+ LYATPTGSNDD YWLYAAIKFKCLLV+NDEMRDH FQLLGND
Sbjct: 495 VDRWNNANVLYATPTGSNDDW---------YWLYAAIKFKCLLVSNDEMRDHLFQLLGND 545
Query: 727 FFPRWKERHQV 737
FFP+WKERHQV
Sbjct: 546 FFPKWKERHQV 556
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 324/551 (58%), Positives = 387/551 (70%), Gaps = 69/551 (12%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 109 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 151
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 152 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 183
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 184 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 228
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528
Query: 667 IEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 726
+++W NA+ LYATPTGSNDD YWLYAAIKFKCLLV+NDEMRDH FQLLGND
Sbjct: 529 VDRWNNANVLYATPTGSNDDW---------YWLYAAIKFKCLLVSNDEMRDHLFQLLGND 579
Query: 727 FFPRWKERHQV 737
FFP+WKERHQV
Sbjct: 580 FFPKWKERHQV 590
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa] gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 286/379 (75%), Positives = 329/379 (86%), Gaps = 12/379 (3%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
SED KKYA QRG EI+EKMC ++VP+NEA+LTAV RMAMS+G+GD+AF+MVK+M +LGI
Sbjct: 62 FSEDVKKYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEMVKQMDALGI 121
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
NP+LRSYGPALSVFC++GD+DKA VE+HMLEHGVYPEEPEL+ALLRVSVE GKGD+VYY
Sbjct: 122 NPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYY 181
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
LLHKLR VR+VSPSTA +I +WFNSK A+R+GK KW+ +K+ +EN GGGWHG GWLG
Sbjct: 182 LLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGGGWHGQGWLG 238
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
KGKW VS T+VG D +CK CG+KL IDLD +ETEKFAESVASIAIKR+R+SSFQ+FQKW
Sbjct: 239 KGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRDSSFQRFQKW 298
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
LDYYGPFEAV+D AN G+Y+Q F P+++NAVVNGIRQK PSKKWPLIVLHN+RITG KM
Sbjct: 299 LDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKM 358
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDH 718
D PVN+A IEKWKNADALYATPTGSNDD YWLYAAIKFKCL+VTNDEMRDH
Sbjct: 359 DGPVNKAFIEKWKNADALYATPTGSNDDW---------YWLYAAIKFKCLIVTNDEMRDH 409
Query: 719 TFQLLGNDFFPRWKERHQV 737
TF LLGNDFFPRWKERHQV
Sbjct: 410 TFHLLGNDFFPRWKERHQV 428
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 292/580 (50%), Positives = 381/580 (65%), Gaps = 64/580 (11%)
Query: 168 GQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225
G + G KK KK ++ +LRVELDMCSKRGDVMGAI LYD A EGIKLG
Sbjct: 111 GNSRDEGTGRRNACKKMKKPPDGEYAGKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLG 170
Query: 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS--TELGDSRDMDNNGQLDY 283
Q+HYNVLLYLCSSA++G V+PAKSG+ M S +G ++ +D +
Sbjct: 171 QHHYNVLLYLCSSASLGFVQPAKSGN------------MGSGIASIGPAQKLDPSPSRSL 218
Query: 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343
G S + S S + ++ +N G +K +
Sbjct: 219 GGSEGDNAYASESHVQ--------DQGKNKADLIPGGLKAQTV----------------- 253
Query: 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMG 401
I + ++ YA RGFEI++KMC ++ V M+EA+LTA RMA+SMG
Sbjct: 254 ------------SIPVEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMG 301
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
D DMAF++VK+MK LG+ P+LRSYGPAL+ FCN+G+V+KA VE HMLE G+ PEE ELE
Sbjct: 302 DSDMAFEIVKQMKGLGLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELE 361
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
LLR SV +GD+VYYLLHK RT+VR+VS STA++ WF S A+++GK+KW+ I
Sbjct: 362 TLLRASVVGRRGDKVYYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIA 421
Query: 522 DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVAS 581
+EN GGGWHG GWLG+GKW V+H+ + + +C CGEKLAIIDLDP ETE FA VA
Sbjct: 422 KAIENNGGGWHGFGWLGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAK 481
Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSK 641
+AIKRER S+F+ FQKWL+ +GPFEAVVDAANVGL+S ++ ++VN+V + IR +F SK
Sbjct: 482 LAIKRERKSNFENFQKWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSK 541
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYA 701
KWPLIVLHN+ + G +M + + L++KWK +++YATPTGSNDD YWLYA
Sbjct: 542 KWPLIVLHNKHLIGERMKKLNDHKLVQKWKQENSIYATPTGSNDDW---------YWLYA 592
Query: 702 AIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVSESL 741
AI+ KCL++TNDEMRDHTFQ+L +FFP+WKERHQV +L
Sbjct: 593 AIRCKCLIITNDEMRDHTFQILERNFFPKWKERHQVHFTL 632
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218190470|gb|EEC72897.1| hypothetical protein OsI_06719 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 299/549 (54%), Positives = 378/549 (68%), Gaps = 61/549 (11%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +LRVELDMCSKRGDV+GAI LYD A +EGIK+GQ+HY+VLLYLCSSAA+G V+PAKSG
Sbjct: 177 EVKLRVELDMCSKRGDVIGAINLYDSAVKEGIKMGQHHYSVLLYLCSSAALGFVQPAKSG 236
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+ + + GQL S+ + LE DD+
Sbjct: 237 NAGSGIASI-------------------GQLHSSSTQSVGNLEG------DDVQ------ 265
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
S GH S+ +G DD + K I +S++ ++YA R
Sbjct: 266 ------SEGH----SEDQEGNKTDLFASDDGTEK---------PSRIPVSDELREYARTR 306
Query: 371 GFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
GFEI+EKM +E VPMNE++LTAV RMAMSMG+GDMAFD+VK+MK GI P+LRSYGPA
Sbjct: 307 GFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGPA 366
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L+ FCN+G+V+KA VE HMLE GV PEEPELE LL+ SV A +GD+VYYLLHK RT+VR
Sbjct: 367 LTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTVR 426
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+ S +TA ++ WF S A+++GK+KW+ I +EN GGGWHGLGWLG+GKW +SH+
Sbjct: 427 QASSTTAKLLEDWFQSPTASKVGKRKWDAGAITKAIENNGGGWHGLGWLGRGKWTISHSH 486
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
+ + C CGEKL IIDLDP ETE FA VA +AIKRER S+F FQKWL+ +GPF+AV
Sbjct: 487 IDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDAV 546
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
VD ANVGL+S ++ +++N V + IRQ+F S+K PLIV+HNR +TG +M +P NR L+E
Sbjct: 547 VDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLVE 606
Query: 669 KWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 728
KWK ++A+YATPTGSNDD YWLYAAI+ KCL+VTNDEMRDHTFQLL DFF
Sbjct: 607 KWKLSNAIYATPTGSNDDW---------YWLYAAIRCKCLMVTNDEMRDHTFQLLERDFF 657
Query: 729 PRWKERHQV 737
P+WKERHQV
Sbjct: 658 PKWKERHQV 666
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| TAIR|locus:2045432 | 572 | PRORP1 "proteinaceous RNase P | 0.502 | 0.652 | 0.502 | 5.3e-117 | |
| TAIR|locus:2059824 | 528 | PRORP2 "proteinaceous RNase P | 0.486 | 0.683 | 0.411 | 2.8e-84 | |
| TAIR|locus:2141662 | 576 | PRORP3 "AT4G21900" [Arabidopsi | 0.486 | 0.626 | 0.411 | 5.8e-82 | |
| TAIR|locus:2175178 | 156 | AT5G60430 [Arabidopsis thalian | 0.106 | 0.506 | 0.413 | 4.7e-12 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.421 | 0.496 | 0.229 | 5.2e-05 | |
| TAIR|locus:2065428 | 559 | AT2G01740 "AT2G01740" [Arabido | 0.161 | 0.214 | 0.258 | 0.0002 | |
| TAIR|locus:2197424 | 664 | EMB3103 "EMBRYO DEFECTIVE 3103 | 0.164 | 0.183 | 0.237 | 0.00063 | |
| UNIPROTKB|O15091 | 583 | KIAA0391 "Mitochondrial ribonu | 0.238 | 0.303 | 0.231 | 0.00067 | |
| RGD|1305089 | 587 | RGD1305089 "similar to 1110008 | 0.238 | 0.301 | 0.236 | 0.00088 |
| TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 5.3e-117, Sum P(2) = 5.3e-117
Identities = 192/382 (50%), Positives = 254/382 (66%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + +
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHT 719
P NRAL+EKWKNA ALYATP GSNDD YWLYAA+ KCLLVTNDEMRDH
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDW---------YWLYAAVSCKCLLVTNDEMRDHL 499
Query: 720 FQLLGNDFFPRWKERHQVSESL 741
FQLLGN FFPRWKE+HQV S+
Sbjct: 500 FQLLGNSFFPRWKEKHQVRISV 521
|
|
| TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 159/386 (41%), Positives = 228/386 (59%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G ++ PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T +I +WF ++A +G ++++ + N
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVT 711
R+ ++ P +R L+E+W + LYATP GSNDD YWLYAA K KCLLVT
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDW---------YWLYAAAKLKCLLVT 438
Query: 712 NDEMRDHTFQLLGNDFFPRWKERHQV 737
NDEMRDH F+LLG+ FF +WKERHQV
Sbjct: 439 NDEMRDHIFELLGSTFFQKWKERHQV 464
|
|
| TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 159/386 (41%), Positives = 224/386 (58%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G ++ PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T+ I +WF +A+ + L++ +
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NS-----SFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R+ NS F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVT 711
R+ ++ P +R L+E+W N + LYATP GSNDD YWLYAA K KCLLVT
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDW---------YWLYAAAKLKCLLVT 497
Query: 712 NDEMRDHTFQLLGNDFFPRWKERHQV 737
NDEMRDH F+LL N FF +WKERHQV
Sbjct: 498 NDEMRDHIFELLSNSFFQKWKERHQV 523
|
|
| TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NSS-----FQKF 595
IV V C C E+LA +D + +ET+KF +S+ ++A++R+ NS F +F
Sbjct: 25 IVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEF 84
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
Q WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 85 QDWLEKHGDYEAIVDGANIGLY-QQNF 110
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 80/349 (22%), Positives = 154/349 (44%)
Query: 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCS----SAAVGVVKPAKSGSGMR 254
+C KRGD A L +K ++ ++ G YN ++ LC A+ + K ++ G+R
Sbjct: 231 LC-KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET-KGIR 288
Query: 255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
+ S++ S R D + L S MI++ + + F L F ++ L
Sbjct: 289 P-NVVTYSSLISCLCNYGRWSDASRLL----SDMIERKINPDVFTFSALIDAFVKEGKLV 343
Query: 315 QFSNGHMKLNSQLLDGR----SNLERG---PD--DQSRKK-DWSIDNQDADEI----RLS 360
+ + ++ + +D S+L G D D++++ ++ + ++ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 361 EDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+ KY + G E++ +M + N + + + GD DMA ++ K M S G+
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P + +Y L C NG ++KA V E++ + P ++ +AGK + + L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAA--RLGKKKWNESLIKDTMEN 526
L S++ V P DV+A +N+ + R G K+ ++L K+ E+
Sbjct: 524 FCNL--SLKGVKP---DVVA--YNTMISGFCRKGSKEEADALFKEMKED 565
|
|
| TAIR|locus:2065428 AT2G01740 "AT2G01740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00020, P = 0.00020
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 245 KKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDIT 304
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HKL
Sbjct: 305 AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
|
|
| TAIR|locus:2197424 EMB3103 "EMBRYO DEFECTIVE 3103" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 0.00063, Sum P(2) = 0.00062
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
|
|
| UNIPROTKB|O15091 KIAA0391 "Mitochondrial ribonuclease P protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 47/203 (23%), Positives = 82/203 (40%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TTV C CG+ + I L P E E + I ++ ++F+ ++
Sbjct: 340 TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + ++ + + + L+VL + + + Q
Sbjct: 400 SRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVLGRKHML-RRSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKF--KCLLVTNDEMRDH 718
+ E K A +A DD + D+ + LYA + C +T D MRDH
Sbjct: 455 WSRDEMEEVQKQASCFFA------DDISEDDP----FLLYATLHSGNHCRFITRDLMRDH 504
Query: 719 TFQLLG---NDFFPRWKERHQVS 738
L F +W++ HQ++
Sbjct: 505 KACLPDAKTQRLFFKWQQGHQLA 527
|
|
| RGD|1305089 RGD1305089 "similar to 1110008L16Rik protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 0.00088, Sum P(3) = 0.00087
Identities = 48/203 (23%), Positives = 81/203 (39%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TT+ C CG + I L P E E E++ I K+ ++F++++
Sbjct: 340 TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + + GI + + L+VL + + Q
Sbjct: 400 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQNLQLLVLGRKHML-RPSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKF--KCLLVTNDEMRDH 718
+ + K A +A S DD + LYA + C +T D +RDH
Sbjct: 455 WRKDEMEQVRKQAHCFFADNI-SEDD---------PFLLYATLNSGSHCKFITKDLLRDH 504
Query: 719 TFQL---LGNDFFPRWKERHQVS 738
L F +W++ HQ++
Sbjct: 505 KACLPDARAQRLFFKWQQGHQLA 527
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 742 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G D A ++ + + I
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ GD D A S+ + M + GV P+E AL+ V+ AG D+ + +L R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 485 TS 486
Sbjct: 677 KQ 678
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 25/113 (22%), Positives = 48/113 (42%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
IY+ M V +E +A+ +A GD D AF++++ + GI SY +
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
N + KA + E + + P + AL+ E + + +L +++
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
L +Y L GD D A +V E M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PF11977 | 155 | RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.63 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.54 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.42 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.98 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.62 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.57 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.44 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.4 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.39 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.37 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.36 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.23 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.22 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.2 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.09 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.04 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.9 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.76 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.76 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.75 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.45 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.36 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.24 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.04 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.87 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.69 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.46 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.3 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.23 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.19 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.15 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.13 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.1 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.04 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.98 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 95.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 95.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.8 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.71 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 95.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.49 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 95.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.34 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 95.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 95.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.12 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 94.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 94.8 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 94.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 94.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 94.58 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.21 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 94.2 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 94.11 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.07 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 93.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 93.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 93.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 93.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 93.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 93.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 93.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 93.16 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.85 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.82 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 92.72 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 92.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.64 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.63 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 92.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 92.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 92.53 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 92.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 92.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 92.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 91.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 91.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 91.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 91.05 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 91.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 90.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 90.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 90.56 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 90.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 90.28 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 90.09 | |
| KOG3777 | 443 | consensus Uncharacterized conserved protein [Funct | 90.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 89.9 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 89.9 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 89.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 89.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 89.78 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 88.95 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.88 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 88.85 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 88.52 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 88.46 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 87.6 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 87.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 86.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 86.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 85.77 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 84.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 84.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 84.3 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 84.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 83.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 83.83 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 83.62 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 82.83 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 82.15 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 81.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 81.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 81.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 81.09 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 80.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 80.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=484.07 Aligned_cols=505 Identities=13% Similarity=0.175 Sum_probs=288.6
Q ss_pred hhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004610 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (742)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (742)
.+||..+. .+++.++.++|.++|++|.+ .|+.||.+|||+||++|++.|++++|+++|++|.+.|+.||.+|
T Consensus 473 ~tynsLI~--~y~k~G~vd~A~~vf~eM~~------~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 473 KLYTTLIS--TCAKSGKVDAMFEVFHEMVN------AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HHHHHHHH--HHHhCcCHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 33444444 44455555555555555522 23445556666666666666666666666666666666666666
Q ss_pred HHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhccc-CCCC-cccccccccccccccccccccCChHHHHHH
Q 004610 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (742)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~-~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~l 306 (742)
||+||.+|+ +.|++++|.++|. +|... .|+. |.++||+||.+ ||+.|++++|.++
T Consensus 545 YnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTynaLI~a------y~k~G~ldeA~el 601 (1060)
T PLN03218 545 FNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGALMKA------CANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHHHHHH------HHHCCCHHHHHHH
Confidence 666666666 6666666666663 55432 2444 56666666666 6666666666666
Q ss_pred HHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC
Q 004610 307 FNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (742)
Q Consensus 307 f~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (742)
|++|.+.|+.|+..+|+ .+|++|+ ++|..+|++|...|+.||.++|+. ||++|++.|++++|.++|++|.+.
T Consensus 602 f~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns-LI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-LVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHc
Confidence 66666666666666666 6666666 345556666776677777777766 667777777777777777777766
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004610 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (742)
Q Consensus 382 g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (742)
|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 77777777777777777777777777777777666667777777777777777777777777777777667777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHHHHHHhhchHHHHhccc-----cchh-------HHHHHHhhhc
Q 004610 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKK-----KWNE-------SLIKDTMENK 527 (742)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~~~~~~a~~~-----~w~~-------~~v~ea~~~~ 527 (742)
+||.+|++.|++++|.++|.+|.+. |+.|+ +|+.+.++|... ..+++.. .|+. .-..+++.
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tynsLIglc~~~-y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~-- 833 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRCITGLCLRR-FEKACALGEPVVSFDSGRPQIENKWTSWALM-- 833 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhccccccccchHHHHHH--
Confidence 7777777777777777777777666 44444 566655554421 1111100 0110 11123444
Q ss_pred CCCccccccCCCCceEEEEeeecCCCccccccccccc-----ccCCH-----HHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 004610 528 GGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDP-----IETEKFAESVASIAIKRERNSSFQKFQK 597 (742)
Q Consensus 528 g~~~~~m~~~g~~p~~v~~~~v~~~G~C~~c~~~L~~-----i~l~~-----~e~~~l~~~i~~~a~~~~~~~~~~~F~~ 597 (742)
+|++|...|+.|+.++|..++ .+.|...+..+.. +.+.+ ..+..+.+.+ ....+++|..|.+
T Consensus 834 --lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~-----~~~~~~A~~l~~e 905 (1060)
T PLN03218 834 --VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF-----GEYDPRAFSLLEE 905 (1060)
T ss_pred --HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh-----ccChHHHHHHHHH
Confidence 778899999999999996655 5555555432211 11111 1122222221 1112468999999
Q ss_pred HHhhcCCcccccccccccccCCCCcCcc----cHHHHHHHHHhhCCCC-CccEEEe--cc--cccc---CCC-CC--Chh
Q 004610 598 WLDYYGPFEAVVDAANVGLYSQRNFKPA----RVNAVVNGIRQKFPSK-KWPLIVL--HN--RRIT---GHK-MD--QPV 662 (742)
Q Consensus 598 ~l~~~~pyD~viDG~NVg~y~~~~~~~~----~i~~vv~~l~~~~~~~-~~~lvvl--~~--~~~~---~~~-~~--~~~ 662 (742)
++..+..+++..+-...- +.-..++.. -+...++.|++++..| +.|-+.+ |. |+.- |+. .. ..-
T Consensus 906 m~~~Gi~p~~~~~~~~~~-~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 984 (1060)
T PLN03218 906 AASLGVVPSVSFKKSPIV-IDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRV 984 (1060)
T ss_pred HHHcCCCCCcccccCceE-EEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHH
Confidence 998876666653332222 221222221 2334444444433334 5664433 22 2221 111 00 001
Q ss_pred hHHHHHHHHhcCeeeeCCCCCCCCccCCcccchhhhhhhhh
Q 004610 663 NRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAI 703 (742)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~l~a~~ 703 (742)
..+..--+++-+.=|-- ..|. +|+.-+.|-.+=||-..+
T Consensus 985 ~~~~~~~l~~l~~~~~~-~~~~-g~~~~~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 985 GQAVAALLRRLGLPYQG-SESH-GKLRINGLSLRRWFQPKL 1023 (1060)
T ss_pred HHHHHHHHHHhCCCCCC-CCCC-CeEEeccHHHHHHhcccC
Confidence 12233334555553321 2222 576667777777877766
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=484.10 Aligned_cols=355 Identities=14% Similarity=0.154 Sum_probs=318.3
Q ss_pred chhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004610 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (742)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd 225 (742)
....+||..+. .+++.++.++|.++|++|.+. |+.||.++||+||++|++.|++++|+++|++|.+.|+.||
T Consensus 435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~------Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEA------GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 56677888888 788999999999999999554 4667779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHH
Q 004610 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (742)
Q Consensus 226 ~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~ 304 (742)
.+|||+||.+|+ +.|++++|.++|. +|... |+. |.+|||+||.+ ||+.|++++|.
T Consensus 507 vvTynaLI~gy~----------k~G~~eeAl~lf~-------~M~~~-Gv~PD~vTYnsLI~a------~~k~G~~deA~ 562 (1060)
T PLN03218 507 VHTFGALIDGCA----------RAGQVAKAFGAYG-------IMRSK-NVKPDRVVFNALISA------CGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHH----------HCcCHHHHHHHHH-------HHHHc-CCCCCHHHHHHHHHH------HHHCCCHHHHH
Confidence 999999999999 9999999999994 77776 877 88999999999 99999999999
Q ss_pred HHHHHHHH--cCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHH
Q 004610 305 STFNEKEN--LGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (742)
Q Consensus 305 ~lf~~M~~--~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~ 377 (742)
++|++|.. .|+.||.+||+ .+|++|+ ++|..+|++|.+.|+.|+.++||+ ||.+|++.|++++|.++|++
T Consensus 563 ~lf~eM~~~~~gi~PD~vTyn--aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns-LI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVG--ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI-AVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHhcCCHHHHHHHHHH
Confidence 99999986 68999999999 9999998 567889999999999999999999 99999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004610 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (742)
Q Consensus 378 M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~ 457 (742)
|...|+.||.+||++||++|++.|++++|+++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.+.|+.||.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-HHHHhhchHHHHhccccchhHHHHHHhhhcCCCcccc
Q 004610 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534 (742)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~-I~~~~~~~~~~~a~~~~w~~~~v~ea~~~~g~~~~~m 534 (742)
.+||+||.+|++.|++++|.++|++|... ++.|+ ||++ |.++++.+...++. . ++.+|
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty~sLL~a~~k~G~le~A~-------------~----l~~~M 780 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITYSILLVASERKDDADVGL-------------D----LLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHH-------------H----HHHHH
Confidence 99999999999999999999999999988 66666 8877 76666665543333 2 56667
Q ss_pred ccCCCCceEEEEeeecCCCccc
Q 004610 535 GWLGKGKWIVSHTTVGGDALCK 556 (742)
Q Consensus 535 ~~~g~~p~~v~~~~v~~~G~C~ 556 (742)
...|+.|+.+++.. ++ |.|.
T Consensus 781 ~k~Gi~pd~~tyns-LI-glc~ 800 (1060)
T PLN03218 781 KEDGIKPNLVMCRC-IT-GLCL 800 (1060)
T ss_pred HHcCCCCCHHHHHH-HH-HHHH
Confidence 77888999888844 44 5554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=438.68 Aligned_cols=302 Identities=13% Similarity=0.091 Sum_probs=170.6
Q ss_pred chhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004610 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (742)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd 225 (742)
....++|..+. ...+.++.++|.++|++|. .||+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 156 ~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 156 PDQYMMNRVLL--MHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred cchHHHHHHHH--HHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 34556777776 7788889999999999882 36779999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHccccC-------------------------CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccc
Q 004610 226 QYHYNVLLYLCSSAAVG-------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (742)
Q Consensus 226 ~~tyn~LL~~~~~~~~~-------------------------~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vt 280 (742)
..||+++|.+|++.... ...|.++|++++|.++|+ +|... |+++
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~-------~m~~~----~~vt 292 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD-------GMPEK----TTVA 292 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH-------hCCCC----ChhH
Confidence 88888888888722100 000224444444444442 33222 4444
Q ss_pred cccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhH
Q 004610 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDAD 355 (742)
Q Consensus 281 yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn 355 (742)
||+||.+ |++.|++++|.++|++|.+.|+.||.+||+ .++.+|+ +.|..++..|...|+.||..+||
T Consensus 293 ~n~li~~------y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 293 WNSMLAG------YALHGYSEEALCLYYEMRDSGVSIDQFTFS--IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred HHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 5555555 455555555555555554445555555554 4444444 22333444444445555555554
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004610 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (742)
+ ||++|++.|++++|.++|++|.+ ||.+|||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|++.
T Consensus 365 ~-Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 A-LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred H-HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 4 44555555555555555544432 344445555555555555555555555554444555555555555555555
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 436 g~~~~A~~l~~~M~~-~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
|.+++|.++|++|.+ .|+.|+..+|+.||++|++.|++++|.+++++|
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 555555555555443 344455555555555555555555554444444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=450.70 Aligned_cols=404 Identities=13% Similarity=0.072 Sum_probs=310.6
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.+.+.++..+|.++|++|. .||+++||++|.+|++.|++++|+++|++|...|+.||.+||+++|++|++
T Consensus 130 ~~~~~g~~~~A~~~f~~m~----------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHhCCChHHHHHHHhcCC----------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 4456666666666666661 245566666666666666666666666666666666666666666666553
Q ss_pred cccC-------------------------CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccccccccccccccccc
Q 004610 239 AAVG-------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLE 293 (742)
Q Consensus 239 ~~~~-------------------------~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~ 293 (742)
.... ...|.++|++++|.++|+ +|... |.++||+||.+
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------ 262 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD-------RMPRR----DCISWNAMISG------ 262 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------
Confidence 2211 001449999999999995 66543 88999999999
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~ 368 (742)
|++.|++++|.++|.+|.+.|+.||.+||+ .++.+++ ..++.++..|...|+.||..+||+ ||++|++.|++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~ 339 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSW 339 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH-HHHHHHhcCCH
Confidence 999999999999999999999999999999 9999988 456679999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 369 ~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|
T Consensus 340 ~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 340 GEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred HHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999996 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH-HHHHhhchHHHHhccccchhHHHHHHh---
Q 004610 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTM--- 524 (742)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~w~~~~v~ea~--- 524 (742)
.+.|+.|+..+||+||++|++.|++++|.++|++|.+. ...+|+. |.++++.+...+|. ..+++..
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~------~lf~~m~~~~ 485 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEAL------IFFRQMLLTL 485 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHH------HHHHHHHhCC
Confidence 99999999999999999999999999999999999643 2236777 77777666544333 0111110
Q ss_pred --------------hhcC------CCccccccCCCCceEEEEeeecCCCcccccccccccccC--CHHHHHHHHHHHHHH
Q 004610 525 --------------ENKG------GGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDL--DPIETEKFAESVASI 582 (742)
Q Consensus 525 --------------~~~g------~~~~~m~~~g~~p~~v~~~~v~~~G~C~~c~~~L~~i~l--~~~e~~~l~~~i~~~ 582 (742)
.+.| ..+..+...|..++...+ +.+++++|+++....+.-.+ .+.+...+...|..+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 0000 122334455667777777 67777888777543322111 123445667777888
Q ss_pred HHhhhcchhHHHHHHHHhhcCCccc
Q 004610 583 AIKRERNSSFQKFQKWLDYYGPFEA 607 (742)
Q Consensus 583 a~~~~~~~~~~~F~~~l~~~~pyD~ 607 (742)
+..+...++++.|+++.+....+|.
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 8888888999999999887544443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=429.12 Aligned_cols=417 Identities=13% Similarity=0.095 Sum_probs=321.3
Q ss_pred hhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004610 150 TVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHY 229 (742)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~ty 229 (742)
++|..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..+|
T Consensus 89 ~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 89 SLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred eHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 4555555 6778999999999999995432 35688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHH
Q 004610 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (742)
Q Consensus 230 n~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~ 309 (742)
|.||++|+ ++|++++|.++|+ +|.+. |+++||+||.+ |++.|++++|.++|++
T Consensus 162 n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----~~~t~n~li~~------~~~~g~~~~A~~lf~~ 214 (697)
T PLN03081 162 NRVLLMHV----------KCGMLIDARRLFD-------EMPER----NLASWGTIIGG------LVDAGNYREAFALFRE 214 (697)
T ss_pred HHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CeeeHHHHHHH------HHHCcCHHHHHHHHHH
Confidence 99999999 9999999999995 66543 89999999999 9999999999999999
Q ss_pred HHHcCCCCCccccc---------------------------------hhHHhhccc-----cccCCCchhhhhcCCCcCH
Q 004610 310 KENLGQFSNGHMKL---------------------------------NSQLLDGRS-----NLERGPDDQSRKKDWSIDN 351 (742)
Q Consensus 310 M~~~G~~Pd~~ty~---------------------------------~~~li~~~~-----~~a~~~~~~m~~~g~~pd~ 351 (742)
|.+.|+.||..||+ ...||++|+ ++|..+|++|.. +|+
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~ 290 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTT 290 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CCh
Confidence 99988888777765 015556665 456667777764 588
Q ss_pred HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004610 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (742)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (742)
++||+ ||.+|++.|++++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||++
T Consensus 291 vt~n~-li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 291 VAWNS-MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 88888 88899999999999999999988899999999999999999999999999999999988999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-HHHHhhchHHH
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAA 508 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~-I~~~~~~~~~~ 508 (742)
|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+. |+.|+ ||.. |.++++.|...
T Consensus 370 y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCcHH
Confidence 999999999999999886 578899999999999999999999999999888 66666 7877 66666555443
Q ss_pred HhccccchhHHHHHHhhhcCCCcccccc-CCCCceEEEEeeecCCCccccccccccc-----ccCCHHHHHHHHHHHHHH
Q 004610 509 RLGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDPIETEKFAESVASI 582 (742)
Q Consensus 509 ~a~~~~w~~~~v~ea~~~~g~~~~~m~~-~g~~p~~v~~~~v~~~G~C~~c~~~L~~-----i~l~~~e~~~l~~~i~~~ 582 (742)
++. . .|+.|.. .|+.|+..+| +.+++++|+.+....+. ..+.|. ...+...+...
T Consensus 444 ~a~-------------~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p~-~~~~~~Ll~a~ 504 (697)
T PLN03081 444 QGW-------------E----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKPT-VNMWAALLTAC 504 (697)
T ss_pred HHH-------------H----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Confidence 332 2 5555653 5888999998 77888888888643221 111111 11233333333
Q ss_pred HHhhhcchhHHHHHHHHhhc----CCcccccccccccccCCCCcCcccHHHHHHHHHh
Q 004610 583 AIKRERNSSFQKFQKWLDYY----GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (742)
Q Consensus 583 a~~~~~~~~~~~F~~~l~~~----~pyD~viDG~NVg~y~~~~~~~~~i~~vv~~l~~ 636 (742)
...+........+++.++-. ..|..++++ |.+.| .+.....+.+.+++
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~-----y~~~G-~~~~A~~v~~~m~~ 556 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL-----YNSSG-RQAEAAKVVETLKR 556 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH-----HHhCC-CHHHHHHHHHHHHH
Confidence 34444444444455544322 124444332 44443 46666777777776
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=428.87 Aligned_cols=351 Identities=14% Similarity=0.066 Sum_probs=270.1
Q ss_pred chhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004610 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (742)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd 225 (742)
....+||..+. .+.+.++..+|+++|++|.+.| +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus 251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 34456777777 7889999999999999996554 556669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHH
Q 004610 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (742)
Q Consensus 226 ~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~ 305 (742)
..+||+||.+|+ ++|++++|.++|+ +|... |.++||+||.+ |++.|++++|.+
T Consensus 323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~~----d~~s~n~li~~------~~~~g~~~~A~~ 375 (857)
T PLN03077 323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMETK----DAVSWTAMISG------YEKNGLPDKALE 375 (857)
T ss_pred hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCCC----CeeeHHHHHHH------HHhCCCHHHHHH
Confidence 999999999999 9999999999995 66543 88999999999 999999999999
Q ss_pred HHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 004610 306 TFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (742)
Q Consensus 306 lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~ 380 (742)
+|++|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||..+||+ ||++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH-HHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999 9999988 556679999999999999999999 99999999999999999999864
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC------
Q 004610 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY------ 454 (742)
Q Consensus 381 ~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~------ 454 (742)
+|.++||+||.+|++.|+.++|+++|++|.. ++.||.+||+++|.+|++.|+++.+.+++..|.+.|+.
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 5777888888888888888888888888864 47777777777776666666666666666666666654
Q ss_pred ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-HHHHhhchHH
Q 004610 455 ------------------------PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEA 507 (742)
Q Consensus 455 ------------------------pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~-I~~~~~~~~~ 507 (742)
||..+||+||.+|++.|+.++|.++|++|.+. |+.|+ ||.. |.++++.|..
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChH
Confidence 45555566666666666666666666666655 44444 5554 4443333332
Q ss_pred HHhccccchhHHHHHHhhhcCCCccccc-cCCCCceEEEEeeecCCCcccccc
Q 004610 508 ARLGKKKWNESLIKDTMENKGGGWHGLG-WLGKGKWIVSHTTVGGDALCKCCG 559 (742)
Q Consensus 508 ~~a~~~~w~~~~v~ea~~~~g~~~~~m~-~~g~~p~~v~~~~v~~~G~C~~c~ 559 (742)
.++.. .|+.|. ..|+.|+..+| +.+++++|+++.
T Consensus 606 -------------~ea~~----~f~~M~~~~gi~P~~~~y-~~lv~~l~r~G~ 640 (857)
T PLN03077 606 -------------TQGLE----YFHSMEEKYSITPNLKHY-ACVVDLLGRAGK 640 (857)
T ss_pred -------------HHHHH----HHHHHHHHhCCCCchHHH-HHHHHHHHhCCC
Confidence 22222 344444 34555655555 444555555553
|
|
| >PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-20 Score=180.78 Aligned_cols=122 Identities=28% Similarity=0.421 Sum_probs=93.1
Q ss_pred ccccccccccccC--CCCcCcccHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHhcCeeeeCCCCC
Q 004610 606 EAVVDAANVGLYS--QRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683 (742)
Q Consensus 606 D~viDG~NVg~y~--~~~~~~~~i~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (742)
-+||||+|||++. +..|++.+|..+|++|++ .|..+++|++..+........+.+.+.+++|.+.+.++.||+++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 3799999998632 335999999999999999 67778888876664332335677788999999999999999999
Q ss_pred C--------CCccCCcccchhhhhhhhhcCCceEEeCcccccccccccCCchhhhhhhcceeeeeeC
Q 004610 684 N--------DDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVSESLL 742 (742)
Q Consensus 684 ~--------dd~~~~~~~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l~~~~~f~~w~~~h~~~~~~~ 742 (742)
+ ||+ |||++|...+++|||||+||||.+ ....|.+|.++|+|+|+|+
T Consensus 81 ~~g~~~~~ydD~---------~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~ 135 (155)
T PF11977_consen 81 NYGSRSRNYDDR---------YILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFV 135 (155)
T ss_dssp ETTEEEEB-HHH---------HHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEE
T ss_pred CCCCcccccchH---------HHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEE
Confidence 8 999 999999999999999999999999 7789999999999999984
|
It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=157.32 Aligned_cols=285 Identities=13% Similarity=0.042 Sum_probs=162.2
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd---~~tyn~LL~~~~~ 238 (742)
..++.++|...|+++.+.. +.+..+|..+...+.+.|++++|..+++.+...+-.++ ...+..+...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 5578889999999996532 12446899999999999999999999999987543322 356788888888
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
+.|+.++|..+|. ++.+. ...+..+++.++.. +++.|++++|.++++.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55543 22355678888888 9999999999999999988653322
Q ss_pred cc----ccchhHHhh-----ccccccCCCchhhhhcCCCcCH-HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHH
Q 004610 319 GH----MKLNSQLLD-----GRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (742)
Q Consensus 319 ~~----ty~~~~li~-----~~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ 388 (742)
.. .|. .+.. +...+|...+.++... .|+. ..+.. +...|.+.|++++|.++|+++...+......
T Consensus 176 ~~~~~~~~~--~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 176 RVEIAHFYC--ELAQQALARGDLDAARALLKKALAA--DPQCVRASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred hHHHHHHHH--HHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 11 111 1111 1112233333333332 1221 12222 4444444444444544444444332111123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (742)
+++.++.+|++.|++++|...++++.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 3444444444444455444444444433 233334444444444444454454444444433 344444444444444
Q ss_pred H---cCCHHHHHHHHHHHHHc
Q 004610 469 E---AGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~---~g~~~~A~~ll~~M~~~ 486 (742)
. .|+.+++..+|++|.+.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hccCCccchhHHHHHHHHHHH
Confidence 2 23444444444444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-13 Score=148.33 Aligned_cols=270 Identities=14% Similarity=0.041 Sum_probs=206.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC---
Q 004610 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--- 276 (742)
Q Consensus 200 ~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~--- 276 (742)
.+...|++++|+..|.+|.+.+ +.+..+|..+...+. ..|++++|..++. .+.......
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~l~~~~~~~~~ 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----------RRGEVDRAIRIHQ-------NLLSRPDLTREQ 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----------HcCcHHHHHHHHH-------HHhcCCCCCHHH
Confidence 3567799999999999999763 235568888888888 8899999999995 555442222
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcCCCcCH
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDN 351 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~ 351 (742)
....|..+... +.+.|++++|..+|+++.+.. .++..++. .+...+. .+|...+..+...+-.++.
T Consensus 106 ~~~~~~~La~~------~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (389)
T PRK11788 106 RLLALQELGQD------YLKAGLLDRAEELFLQLVDEG-DFAEGALQ--QLLEIYQQEKDWQKAIDVAERLEKLGGDSLR 176 (389)
T ss_pred HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHcCC-cchHHHHH--HHHHHHHHhchHHHHHHHHHHHHHhcCCcch
Confidence 12346777777 999999999999999998752 23445555 5555544 4566677777765543322
Q ss_pred ---H-hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 352 ---Q-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 352 ---~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
. .|.. +...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+-.....+++.
T Consensus 177 ~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 177 VEIAHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred HHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 1 2334 6677889999999999999998754 33466888899999999999999999999987642223567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH-HHHHh
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWF 502 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~ 502 (742)
+..+|++.|+.++|...++++.+. .|+...+..+...+.+.|++++|..+|.++.+. .+...++.. +..++
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 999999999999999999999876 477777899999999999999999999998776 555445554 44444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-11 Score=144.16 Aligned_cols=283 Identities=12% Similarity=-0.016 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~ 271 (742)
..|..+...|.+.|++++|+..|..+.+.. +.+...+..+...+. +.|+.++|...|. ++..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455555555555555555555555555332 223444555555555 5556666666653 2222
Q ss_pred cCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcC
Q 004610 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (742)
Q Consensus 272 ~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g 346 (742)
. ...+..+|..+... ++..|++++|..+++.|.+.+. ++...+. .+...+. .+|...+..+...+
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1 11133445555555 6666666666666666665542 2222222 2222221 34444555555443
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
|+..++.. +...+.+.|+.++|.+.++++.... +.+...++.+...|.+.|+.++|.++|+++.+.. .++..+++
T Consensus 734 --~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 734 --PSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred --CCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44445555 6677777777777777777776653 4566777777777777888888888888777653 35667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC-ChhHH-HHHHHHhhc
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVIAKWFNS 504 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~-~p~t~-~~I~~~~~~ 504 (742)
.+...+.+.|+ .+|..++++..+.. .-+..++..+...+...|++++|.++|+++.+. .+ .+.++ +....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 77777777777 77888777776542 223455667777778888888888888888876 33 34444 336666666
Q ss_pred hHHHHhc
Q 004610 505 KEAARLG 511 (742)
Q Consensus 505 ~~~~~a~ 511 (742)
|...++.
T Consensus 885 g~~~~A~ 891 (899)
T TIGR02917 885 GRKAEAR 891 (899)
T ss_pred CCHHHHH
Confidence 6544433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-10 Score=140.04 Aligned_cols=262 Identities=10% Similarity=-0.047 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~ 271 (742)
.+|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+. ..|+.++|.+.|. ++..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~~~ 527 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDI----------QEGNPDDAIQRFE-------KVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHH
Confidence 445555555555555555555555554321 122333444444444 4455555555552 2322
Q ss_pred cCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc-----cccCCCchhhhhcC
Q 004610 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (742)
Q Consensus 272 ~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g 346 (742)
. +..+...++.+... +.+.|+.++|..+|.++.+.+- .+...+. .+...+. ..|...+..+...
T Consensus 528 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~- 596 (899)
T TIGR02917 528 I-DPKNLRAILALAGL------YLRTGNEEEAVAWLEKAAELNP-QEIEPAL--ALAQYYLGKGQLKKALAILNEAADA- 596 (899)
T ss_pred h-CcCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCc-cchhHHH--HHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence 2 11133334444444 5555555566555555544321 1111111 2222222 2333344444322
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
...+...|.. +...|.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|..+++++.+. ...+..++.
T Consensus 597 ~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 673 (899)
T TIGR02917 597 APDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQI 673 (899)
T ss_pred CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHH
Confidence 1223344444 5566666666666666666665432 234455566666666666666666666665543 122355566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+...++..|++++|..+++.|.+.+ ..+...+..+...+.+.|++++|.+.|.++...
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 66666666666666666666665554 334555556666666666666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=100.22 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 385 pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
||+++||+||++|++.|++++|+++|++|++.|+.||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=99.65 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004610 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (742)
Q Consensus 189 P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (742)
||+++||++|++|++.|++++|+++|++|++.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999999999999999999999999999999998
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-10 Score=116.65 Aligned_cols=288 Identities=14% Similarity=0.066 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCc-------------------ccCCCCCH
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV-------------------KPAKSGSG 252 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~-------------------~~~k~G~~ 252 (742)
.+=|.|+.. ...|.++++.-+|+.|...|+..+...--.|+..-|=-+...+ .-=|.|.+
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 455666654 4578999999999999999999888887777776552110000 01134443
Q ss_pred HHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhcc
Q 004610 253 MRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR 331 (742)
Q Consensus 253 ~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~ 331 (742)
.+ -+|. -.+ ..-||.+||.| +|+-...+.|.+++.+-.....+.+.-+|| .+|.+-
T Consensus 196 Ad--L~~E-------------~~PKT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN--~lI~~~ 252 (625)
T KOG4422|consen 196 AD--LLFE-------------TLPKTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN--GLIGAS 252 (625)
T ss_pred HH--HHHh-------------hcCCCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--hhhhHH
Confidence 33 3332 111 56689999999 999999999999999999999999999999 888776
Q ss_pred c-cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-
Q 004610 332 S-NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM- 405 (742)
Q Consensus 332 ~-~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~- 405 (742)
+ ...+.+..+|++..+.||..|+|+ ++++..+.|+++. |.+++.+|++-|+.|...+|--+|..+++.+++.+
T Consensus 253 S~~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 253 SYSVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HhhccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 5 444779999999999999999999 9999999997765 56788999999999999999999999999888753
Q ss_pred HHHHHHHHHH----CCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHHc
Q 004610 406 AFDMVKRMKS----LGINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE---PELEALLRVSVEA 470 (742)
Q Consensus 406 A~~l~~~M~~----~g~~P----d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~---~ty~~Li~~~~~~ 470 (742)
|..++.++.. +.++| |..-|-..+..|.+..+.+.|..+..-.... -+.|+. .-|.-++...|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 5555555443 23444 3455677888898999999999988766543 133442 3466788889999
Q ss_pred CCHHHHHHHHHHHHHccCCCChhHHHHHHHHhhc
Q 004610 471 GKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504 (742)
Q Consensus 471 g~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~ 504 (742)
...+.-+..++.|.-+..++.+-+...|......
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhh
Confidence 9999999999999887666666555444433333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-09 Score=110.54 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~ 271 (742)
.||.+||.++|+-...+.|.++|.+-.....+.+..+||.||.+-+ +....++. .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------------~~~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------------YSVGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------------hhccHHHH-------HHHHH
Confidence 7999999999999999999999999998888999999999998866 21224455 36766
Q ss_pred cCCCC-cccccccccccccccccccccCChHHH----HHHHHHHHHcCCCCCccccchhHHhhccccccCC---------
Q 004610 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG--------- 337 (742)
Q Consensus 272 ~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A----~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~--------- 337 (742)
. .+. |..|+|+++.+ ..+.|+++.| .+++.+|++.|+.|...+|. .+|.-+|.+...
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhcccCCchhhhHHHHH
Confidence 6 565 88999999999 9999988654 78889999999999999998 666655522111
Q ss_pred -CchhhhhcCCCcCHHh---------------------------------------------hHHHHHHHHHhhcCHHHH
Q 004610 338 -PDDQSRKKDWSIDNQD---------------------------------------------ADEIRLSEDAKKYAFQRG 371 (742)
Q Consensus 338 -~~~~m~~~g~~pd~~t---------------------------------------------yn~~lI~~~~k~g~~~~A 371 (742)
+.+++..+-++|-..+ |+.-+....|....++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222333332211 222244455555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-C--------HH---
Q 004610 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-D--------VD--- 439 (742)
Q Consensus 372 ~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-~--------~~--- 439 (742)
+..|+.|.-+-+-|+..+-.-++++..-.|.++-.-+++..|+..|..-+...-.-++.-+|+.. + +.
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 56666666555667777777777777777777777777777776664333333333333334332 0 00
Q ss_pred --------HH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 440 --------KA-CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 440 --------~A-~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
++ ..--.+|...... ....+.+.-.+.+.|..++|.++|.-+..+
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 00 0111223333333 334455555567888888888888877443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=120.76 Aligned_cols=256 Identities=13% Similarity=0.058 Sum_probs=162.0
Q ss_pred HHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC
Q 004610 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (742)
Q Consensus 171 ~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G 250 (742)
.++-.|+..|+.|++ +||..+|.-||..|+++.|- +|.-|+-..+..+...|+.++.+.. .++
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 455567667777776 99999999999999999999 9999998878888899999999888 334
Q ss_pred CHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHc--CCCCCccccc-hh--
Q 004610 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL--GQFSNGHMKL-NS-- 325 (742)
Q Consensus 251 ~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~--G~~Pd~~ty~-~~-- 325 (742)
+.+.+.+. -.-||+.|+.+ |...|++.--..+=..|... .+.|..+--. ..
T Consensus 74 d~Enpkep------------------~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEP------------------LADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCC------------------chhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 33322211 22368999999 99998875522211112211 0111110000 00
Q ss_pred HHhhccc---cc---------cCCCchhhhhcCC-CcCHHhhHHHHHHHHHhhc--CHHHHHHHHHHHHhCCC-CCCHHH
Q 004610 326 QLLDGRS---NL---------ERGPDDQSRKKDW-SIDNQDADEIRLSEDAKKY--AFQRGFEIYEKMCLDEV-PMNEAS 389 (742)
Q Consensus 326 ~li~~~~---~~---------a~~~~~~m~~~g~-~pd~~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~g~-~pd~~t 389 (742)
..++++- .. -+++++...+.+. .|-..-++...+ +.+.. ......++. .|.+.+. .|+..+
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl-~~cksl~e~~~s~~ 206 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLL-NMCKSLVEAPTSET 206 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHH-HHHHHhhcCCChHH
Confidence 0111110 00 0111222222221 111111111011 11111 111222333 3333333 499999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (742)
|.+++++...+|+.+.|..++.+|++.|+..+..-|-+||-+ .++...+..+...|.+.|+.|+..||.-.+..+.+
T Consensus 207 l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 207 LHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 999999999999999999999999999999999889999877 88888999999999999999999999888887777
Q ss_pred cCCH
Q 004610 470 AGKG 473 (742)
Q Consensus 470 ~g~~ 473 (742)
+|..
T Consensus 284 N~~t 287 (1088)
T KOG4318|consen 284 NGQT 287 (1088)
T ss_pred chhh
Confidence 6653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-06 Score=104.38 Aligned_cols=290 Identities=9% Similarity=-0.080 Sum_probs=172.1
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~ 237 (742)
.....|+..+|..+++.....-... | ..+..+..++...|++++|++.|+++... .| +...+..+-..+.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~-----~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNG-----R--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCc-----h--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 3446788888888888774432111 2 23333334555678888888888887753 23 3445555556666
Q ss_pred ccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCC
Q 004610 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P 317 (742)
..|+.++|.+.|. +.... .-.+...|..+... +...|++++|...++.+....-.+
T Consensus 122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence 6777888887774 33221 11133345566666 777788888888777665543222
Q ss_pred Cccccchh-HHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004610 318 NGHMKLNS-QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (742)
Q Consensus 318 d~~ty~~~-~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~ 396 (742)
....+... .+..+--.+|...+..+....-.++...+.. +...+.+.|+.++|.+.|++..... +-+...+..+-..
T Consensus 178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLA 255 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 11111100 0011111334444444433321222222322 4566777788888888888777653 3356667777777
Q ss_pred HHHcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 004610 397 AMSMGDGDM----AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAG 471 (742)
Q Consensus 397 ~~~~g~~~~----A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g 471 (742)
+...|+.++ |...|++..+.. ..+...+..+-..+.+.|+.++|...+++..... |+ ...+..+-..|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 778887775 677777766542 2235567777777777888888888887777643 33 445566667777788
Q ss_pred CHHHHHHHHHHHHHc
Q 004610 472 KGDRVYYLLHKLRTS 486 (742)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (742)
++++|...|+++...
T Consensus 333 ~~~eA~~~l~~al~~ 347 (656)
T PRK15174 333 QYTAASDEFVQLARE 347 (656)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888777655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-06 Score=98.70 Aligned_cols=281 Identities=7% Similarity=-0.049 Sum_probs=181.1
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~ 240 (742)
..++.++|.+.|+.+.+.. |+ +...|..+-..+.+.|++++|+..|+++... .| +...+..+..++.
T Consensus 88 ~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV--- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH---
Confidence 4667777777777774321 11 1244556666677777777777777777653 23 3455666666666
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ 320 (742)
..|+.++|...+. .+... ...+...+..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 6677777777663 22221 11111112111 22 455677777777777765553222222
Q ss_pred ccchhHHhhcc-----ccccCCCchhhhhcCCCcC-HHhhHHHHHHHHHhhcCHHH----HHHHHHHHHhCCCCCCHHHH
Q 004610 321 MKLNSQLLDGR-----SNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASL 390 (742)
Q Consensus 321 ty~~~~li~~~-----~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~ty 390 (742)
.+. .+...+ ..+|...+...... .|+ ...+.. +-..|...|++++ |...|++..... +-+...+
T Consensus 214 ~~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~ 287 (656)
T PRK15174 214 SAG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIV 287 (656)
T ss_pred HHH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHH
Confidence 221 111111 13344444444433 233 344445 7788899999886 899999887753 3466789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-EALLRVSV 468 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty-~~Li~~~~ 468 (742)
..+...+.+.|++++|...+++.... .|+ ...+..+-..+.+.|+.++|...++.+... .|+...+ ..+-.++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 99999999999999999999998765 344 455666778899999999999999999875 3554443 33456789
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 004610 469 EAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.++|...|++..+.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-08 Score=70.91 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (742)
Q Consensus 382 g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M 413 (742)
|+.||.+|||+||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-08 Score=70.34 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=18.9
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55555555555555555555555555555555
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.1e-07 Score=102.50 Aligned_cols=242 Identities=13% Similarity=0.044 Sum_probs=156.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccc
Q 004610 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (742)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~ 290 (742)
.++..|...|+.|+.+||..||.-|| ..|+++.|- +|. -|..+ ..+ +...++.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 46778889999999999999999999 788888887 774 23333 444 66678999988
Q ss_pred cccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCC-Cchhhh--------------------------
Q 004610 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSR-------------------------- 343 (742)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~-~~~~m~-------------------------- 343 (742)
...+++.+.+. .|-.-||+ .|..+|.....- .|+...
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 77778777765 46666666 555555411000 011100
Q ss_pred --hcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004610 344 --KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 344 --~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
..+..||..+ .|--..-.|.++.+.+++..|... -..|-.+ .|+-+.... .-..++....+...-.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCC
Confidence 1112222211 222233334444444444443321 1112111 133333222 22334444443322259
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHH-
Q 004610 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV- 497 (742)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~- 497 (742)
+..+|.+++++-..+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-+..++..|++. |+.|+ |+..
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ady 277 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADY 277 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHH
Confidence 9999999999999999999999999999999999999999999977 88888999999999999 66665 7766
Q ss_pred HHHHhhchH
Q 004610 498 IAKWFNSKE 506 (742)
Q Consensus 498 I~~~~~~~~ 506 (742)
+...++.+.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 777777544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-05 Score=94.56 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=186.5
Q ss_pred cCcchHHHHHHHHHhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcccc
Q 004610 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (742)
Q Consensus 164 ~~~~~A~~v~~~m~~~g~~~~~~~~P-~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~ 241 (742)
++.++|.+.|+...+.+ ...| +...|+.+-..+...|++++|+..|++..+. .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 56778999999886544 1122 3467788888888999999999999998864 454 557777777777
Q ss_pred CCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccc
Q 004610 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (742)
Q Consensus 242 ~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~t 321 (742)
..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...|++..+. .|+.
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~-- 432 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDF-- 432 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccC--
Confidence 7899999999995 33332 22234446556556 78899999999999887664 2322
Q ss_pred cchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004610 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (742)
Q Consensus 322 y~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g 401 (742)
...|.. +-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus 433 -----------------------------~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 433 -----------------------------IFSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred -----------------------------HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 122223 6677889999999999999987642 345788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004610 402 DGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~--------~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (742)
++++|.+.|++..... |+. ..++..+..+-..|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999876542 221 112222333444699999999999987654 23445788999999999999
Q ss_pred HHHHHHHHHHHHc
Q 004610 474 DRVYYLLHKLRTS 486 (742)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (742)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=97.65 Aligned_cols=255 Identities=16% Similarity=0.102 Sum_probs=101.5
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVEL-DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI-~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
-+.++..+|+++++.-.... .+|+-..|-.++ ..+-..++.+.|++.|+++...+-. ++..|..++.. .
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~-- 88 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L-- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c--
Confidence 36788899999996542211 123324444444 4555678999999999999866533 55567777666 5
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~ 319 (742)
..++.++|.+++. +..+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 --------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~- 144 (280)
T PF13429_consen 89 --------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD- 144 (280)
T ss_dssp ----------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred --------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC-
Confidence 5677888888773 22111 1133345566666 7788899999998888765321111
Q ss_pred cccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 004610 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAM 398 (742)
Q Consensus 320 ~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~~~ 398 (742)
+...|.. +-..+.+.|+.++|.+++++..+.. | |....+.++..+.
T Consensus 145 ------------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 145 ------------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLI 191 (280)
T ss_dssp -------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred ------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 2222223 5567788999999999999887753 5 5778888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004610 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (742)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (742)
..|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...+++..... .-|......+-+++...|+.++|.+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 9999999888888877663 4556667788888889999999999999987643 3367777888899999999999998
Q ss_pred HHHHHH
Q 004610 479 LLHKLR 484 (742)
Q Consensus 479 ll~~M~ 484 (742)
+.++.-
T Consensus 270 ~~~~~~ 275 (280)
T PF13429_consen 270 LRRQAL 275 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 877653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-05 Score=75.92 Aligned_cols=201 Identities=16% Similarity=0.094 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhc
Q 004610 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (742)
Q Consensus 191 ~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~ 270 (742)
...+..+...+...|++++|.+.|++..+.. +.+...+..+-..+. ..|+.++|.+.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~----------- 88 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSF----------- 88 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHH-----------
Confidence 4667777888899999999999999887643 223445555555555 445555555555
Q ss_pred ccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcC
Q 004610 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (742)
Q Consensus 271 ~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (742)
++..+.. |+ +
T Consensus 89 -------------------------------------~~al~~~--~~-------------------------------~ 98 (234)
T TIGR02521 89 -------------------------------------RRALTLN--PN-------------------------------N 98 (234)
T ss_pred -------------------------------------HHHHhhC--CC-------------------------------C
Confidence 3333321 11 1
Q ss_pred HHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004610 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (742)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~-pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (742)
...+.. +...+...|++++|.+.|++....... .+...+..+...+...|+.++|.+.+.+..... ..+...+..+.
T Consensus 99 ~~~~~~-~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 176 (234)
T TIGR02521 99 GDVLNN-YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA 176 (234)
T ss_pred HHHHHH-HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence 112223 556677888888888888887764222 234566667778888889999988888876552 22456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+...|+.++|...+++.... ...+...+..+...+...|+.++|..+.+.+...
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888889999999888888776 3445666777778888888888888887777543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-05 Score=86.11 Aligned_cols=276 Identities=8% Similarity=-0.012 Sum_probs=183.8
Q ss_pred hcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHccc
Q 004610 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL--LYLCSSAA 240 (742)
Q Consensus 163 ~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~L--L~~~~~~~ 240 (742)
.|+...|.+....-.+ ..-.|. ..|-....+..+.|+++.|.+.|.++.+ ..|+...+-.+ -..+.
T Consensus 97 eGd~~~A~k~l~~~~~------~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD------HAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHh------cccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 4888889888776522 111233 4454445556899999999999999975 45665544422 33455
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ 320 (742)
..|+.+.|...++ ++.+. .-.+......+... +.+.|++++|.+++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 22244446667777 999999999999999999987654331
Q ss_pred -------ccchhHHhh-cccccc----CCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHH
Q 004610 321 -------MKLNSQLLD-GRSNLE----RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (742)
Q Consensus 321 -------ty~~~~li~-~~~~~a----~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ 388 (742)
+|. .++. +..... ..++..+... ...+...... +...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~-~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVA-MAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 1111 000100 0111111111 1112223333 778888999999999999888774 45552
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (742)
-.++.+.+..++.+++++..+...+. .|+. ..+..+=..|.+.|++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 22344555668999999999888765 2444 44556667788889999999999998865 59999989999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 004610 468 VEAGKGDRVYYLLHKL 483 (742)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (742)
.+.|+.++|.+++++=
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999998888754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7e-05 Score=94.74 Aligned_cols=295 Identities=11% Similarity=-0.002 Sum_probs=157.5
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
...+.++.++|.+.|++..+.. | .+...+..+-..+...|++++|++.|++..+.. +.+...+..+...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3457789999999999986531 1 234677778899999999999999999998642 2234444444433321
Q ss_pred cccC--------------------------------CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccc
Q 004610 239 AAVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS 286 (742)
Q Consensus 239 ~~~~--------------------------------~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~ 286 (742)
.... ...+...|+.++|+..|. +.... ...+...+..+-.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~ 503 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQ 503 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHH
Confidence 0000 000114678888888884 33322 1112223444555
Q ss_pred cccccccccccCChHHHHHHHHHHHHcCCCCCccc--cchhHHhhccc--cccCCCchhhhhcCCCcCHHh---------
Q 004610 287 PMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD--------- 353 (742)
Q Consensus 287 ~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~t--y~~~~li~~~~--~~a~~~~~~m~~~g~~pd~~t--------- 353 (742)
. +.+.|++++|...|++..+. .|+... |..+.+..... .+|...+..+......++...
T Consensus 504 ~------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 504 D------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred H------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 5 88899999999999988764 243221 21111111000 112222222211111111100
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
+-. +...+...|+.++|.++++. .+.+...+..+...+.+.|+.++|.+.|++..+.. ..+...+..+...|.
T Consensus 576 ~l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~ 648 (1157)
T PRK11447 576 VLE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDI 648 (1157)
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 001 23445556666666666551 13344445556666666666666666666655441 123455555666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 434 NNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.++|.+.++...+. .| +...+..+-..+...|+.++|.++++++...
T Consensus 649 ~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 666666666666655432 22 2333444555555666666666666665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.3e-05 Score=87.42 Aligned_cols=301 Identities=10% Similarity=-0.035 Sum_probs=174.3
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSS 238 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~ 238 (742)
.-+.++..+|.+.|+...+ ..|+...|.-+-.+|.+.|++++|++.++...+. .| +...|..+-.+|.
T Consensus 137 ~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~- 205 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD- 205 (615)
T ss_pred HHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH-
Confidence 4467899999999999743 3355578888889999999999999999998864 34 4567777777787
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccc-----------------------hhh-cccCCCCcccc----c---------
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNS-----------------------TEL-GDSRDMDNNGQ----L--------- 281 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s-----------------------~em-~~~~g~~~~vt----y--------- 281 (742)
..|++++|+..|....... .+. .....-.+..+ |
T Consensus 206 ---------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 206 ---------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred ---------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 7888888876553110000 000 00000000000 0
Q ss_pred ----cc-------ccccc----cccccccccCChHHHHHHHHHHHHcC-CCCCc-cccc-hhHH--hhccccccCCCchh
Q 004610 282 ----DY-------GSSPM----IDKLESNSSYRFDDLDSTFNEKENLG-QFSNG-HMKL-NSQL--LDGRSNLERGPDDQ 341 (742)
Q Consensus 282 ----n~-------lI~~~----~~~~~~~~~g~~~~A~~lf~~M~~~G-~~Pd~-~ty~-~~~l--i~~~~~~a~~~~~~ 341 (742)
.. +..+. ....+....+.+++|...|++..+.+ ..|+. ..|. .+.+ ..+--.+|...+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 00000 00000112356778888888777665 22322 2222 0000 01111333334444
Q ss_pred hhhcCCCcCH-HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004610 342 SRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 342 m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
... ..|+. ..|.. +-..+...|++++|.+.|++..... +-+..+|..+...+...|++++|...|++..+.. ..
T Consensus 357 al~--l~P~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 357 SIE--LDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHH--cCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 333 23442 24444 5566667777777777777765542 3345667777777777777777777777765442 12
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+...|..+-..+.+.|+.++|...|++..... .-+...|+.+-..+...|++++|.+.|++-...
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34555556666677777777777777766532 223566677777777777777777777776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-06 Score=89.89 Aligned_cols=229 Identities=16% Similarity=0.105 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCC
Q 004610 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (742)
Q Consensus 196 ~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~ 275 (742)
.+-..+.+.|++++|++++++-....-.|+...|-.++.-++. ..|+.+.|...+. ++... +-
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-cc
Confidence 3356678899999999999765544335666666555554441 4577888888884 44432 21
Q ss_pred CcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhH
Q 004610 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (742)
Q Consensus 276 ~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn 355 (742)
.+...|..++. +...+++++|.+++.+.-+.. ++.. .+.
T Consensus 76 ~~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------------~l~ 114 (280)
T PF13429_consen 76 ANPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPR--------------------------------YLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-------ccccccccccccccccccccc--cccc--------------------------------hhh
Confidence 12222333332 336778888888776554432 1111 122
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 004610 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (742)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~ 433 (742)
. ++..+.+.++++++.+++++.... ..+.|...|..+...+.+.|+.++|.+.+++..+. .|+ ....+.++..+.
T Consensus 115 ~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 115 S-ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3 667788999999999999998753 34568888999999999999999999999998765 364 677888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.+++.++++...... ..|...+..+-.+|...|+.++|..+|++....
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9999999999998887664 455667889999999999999999999998875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00014 Score=88.13 Aligned_cols=288 Identities=8% Similarity=-0.010 Sum_probs=174.6
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
....++..+|.++++...+. .+.+...+..+...+.+.|++++|+..+++..+. -+.+.. +..+-.++.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~-- 127 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK-- 127 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH--
Confidence 44677888888888886432 1122345667777888888888888888888765 223444 666666666
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~ 319 (742)
..|+.++|+..+. +..+. ...+...+..+... +...|..++|...++.... .|+.
T Consensus 128 --------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~ 182 (765)
T PRK10049 128 --------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAE 182 (765)
T ss_pred --------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHH
Confidence 7788888888884 33332 12222223334444 5566777777777764332 2221
Q ss_pred ccc----chhHHhhcc-------------ccccCCCchhhhhc-CCCcCHH-hhHHHH---HHHHHhhcCHHHHHHHHHH
Q 004610 320 HMK----LNSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEIR---LSEDAKKYAFQRGFEIYEK 377 (742)
Q Consensus 320 ~ty----~~~~li~~~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~l---I~~~~k~g~~~~A~~lf~~ 377 (742)
... ....++... .+.|...++.+... .-.|+.. .+.... +..+...|++++|.+.|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000 000111000 01222333344422 1223221 111111 2344566899999999999
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 378 MCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 378 M~~~g~~-pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
+...+-. |+..- -.+...|...|++++|+.+|+++.... |. ...+..+..++...|+.++|.++++.+.+.
T Consensus 263 ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 263 LKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred hhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9887632 43222 224678889999999999999876542 22 234556666788999999999999998865
Q ss_pred C-----------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 452 G-----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 452 g-----------v~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
. -.|+. ..+..+...+...|+.++|.++++++...
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 12342 24456667788899999999999998776
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.5e-05 Score=83.18 Aligned_cols=281 Identities=9% Similarity=-0.023 Sum_probs=181.3
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~-~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~--tyn~LL~~~~~ 238 (742)
..|+...|.+.+....+. .|+ ...|-..-.+..+.|+.+.|.+.|.+..+.- |+.. .--+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568999999999776321 232 2333444566788899999999999987543 4432 2223355555
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..|+.+.|...+. ++.+. ...+...+-.+... +.+.|++++|.+++....+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6799999999995 55554 33333345566666 8999999999999999999975433
Q ss_pred ccccc------hhHHhhccccccCCCchhhhhcCCCc-----CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH
Q 004610 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDWSI-----DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (742)
Q Consensus 319 ~~ty~------~~~li~~~~~~a~~~~~~m~~~g~~p-----d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~ 387 (742)
..... .+.+-.+....+...+..+... .| +...+-. +...+...|+.++|.+++++..+.. ||.
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~ 296 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDD 296 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCc
Confidence 32211 0001111111111122222221 12 4444444 7788899999999999999888753 443
Q ss_pred HHH-HHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004610 388 ASL-TAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (742)
Q Consensus 388 ~ty-n~Li~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (742)
... -.++..+ ...++.+.+.+.++...+. .|+.. ...++=..+.+.|++++|.+.|+........|+...+.
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 321 0123322 3456777888888776544 34444 33455566778899999999999644445578988888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 004610 462 ALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M 483 (742)
.|-..+.+.|+.++|.+++++-
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999888864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00089 Score=81.08 Aligned_cols=291 Identities=9% Similarity=-0.048 Sum_probs=187.7
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~ 237 (742)
.+.+.++.++|...+++..+. .| .+.. +..+-.++...|+.++|+..|+++.+. .| +...+..+..++.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345789999999999998543 12 2234 778888899999999999999999875 34 4444555666666
Q ss_pred ccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCC----CC----cccccccccccccccccccccCCh---HHHHHH
Q 004610 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD----MD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDST 306 (742)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g----~~----~~vtyn~lI~~~~~~~~~~~~g~~---~~A~~l 306 (742)
..|..++|+..+... ...++ +. ....-..+... ....+++ ++|...
T Consensus 162 ----------~~~~~e~Al~~l~~~-------~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 162 ----------NNRLSAPALGAIDDA-------NLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQ 218 (765)
T ss_pred ----------HCCChHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHH
Confidence 667888888887521 11100 00 00000111111 2333445 778888
Q ss_pred HHHHHHc-CCCCCccc-cc------hhH-HhhccccccCCCchhhhhcCCC-cCH-HhhHHHHHHHHHhhcCHHHHHHHH
Q 004610 307 FNEKENL-GQFSNGHM-KL------NSQ-LLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIY 375 (742)
Q Consensus 307 f~~M~~~-G~~Pd~~t-y~------~~~-li~~~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf 375 (742)
++.+.+. ...|+... +. .+. +..+-..+|...|..+...+-. |+- ..+ +-..|...|++++|..+|
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHH
Confidence 8888764 33343321 11 001 1122225566677777766422 332 222 346788899999999999
Q ss_pred HHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCC---hhhHHHHHHHHHHcCCH
Q 004610 376 EKMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDV 438 (742)
Q Consensus 376 ~~M~~~g~~p---d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-----------~~Pd---~~ty~~lI~~~~~~g~~ 438 (742)
+++....-.. ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+...|+.
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 9876543111 13456667778889999999999999887652 1123 22345566778888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
++|.++++++.... .-+...+..+...+...|+.++|.+++++....
T Consensus 376 ~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 376 PQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 99999999987653 335667788888888999999999999988765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00042 Score=71.93 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVF 432 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~ 432 (742)
|+.-|-+..++++|+++-+++.+.|-.+.. .-|.-|...+....+++.|..+++.-.+. .|+.+--++++ ..+
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~ 224 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHH
Confidence 667777777777777777777665543332 23445555555566777777777665544 23333333333 345
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
...|+.++|.+.++...+.+..--..+...|..+|...|+.++....+.++.+...|+.+.
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 5677777777777777777655555666777777777777777777777777765555554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00059 Score=86.46 Aligned_cols=253 Identities=10% Similarity=0.046 Sum_probs=175.8
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
+...++.++|.+.|++..+.. |+ +...+..+...|.+.|++++|+..|+++.+.. +-+...+-.+...+.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~--P~-----~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~-- 540 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD--PG-----SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS-- 540 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH--
Confidence 446789999999999985431 11 33567778889999999999999999988632 113333333333344
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccc----------ccccccccccccccccccCChHHHHHHHHH
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG----------QLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~v----------tyn~lI~~~~~~~~~~~~g~~~~A~~lf~~ 309 (742)
..|+.++|...+. .+... ...+.. .+-.+... +...|+.++|..+++.
T Consensus 541 --------~~~~~~~Al~~l~-------~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~------l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 541 --------GSDRDRAALAHLN-------TLPRA-QWNSNIQELAQRLQSDQVLETANR------LRDSGKEAEAEALLRQ 598 (1157)
T ss_pred --------hCCCHHHHHHHHH-------hCCch-hcChhHHHHHHHHhhhHHHHHHHH------HHHCCCHHHHHHHHHh
Confidence 6688899999885 22111 000000 00111223 5677888888887761
Q ss_pred HHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHH
Q 004610 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (742)
Q Consensus 310 M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t 389 (742)
.|+.. ..+.. +-..|.+.|+.++|++.|++..... +-+...
T Consensus 599 ------~p~~~-------------------------------~~~~~-La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a 639 (1157)
T PRK11447 599 ------QPPST-------------------------------RIDLT-LADWAQQRGDYAAARAAYQRVLTRE-PGNADA 639 (1157)
T ss_pred ------CCCCc-------------------------------hHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 22211 11223 6678889999999999999988763 446889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEAL 463 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~p---d~~ty~~L 463 (742)
+..+...+...|+.++|.+.++...+. .|+ ..++..+-.++...|+.++|.++++.+....- .| +...+..+
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 999999999999999999999977643 343 44555566778899999999999999986532 22 23456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004610 464 LRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~ 485 (742)
-..+.+.|+.++|..+|++-..
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788999999999999988754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00019 Score=79.69 Aligned_cols=281 Identities=11% Similarity=0.011 Sum_probs=170.1
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.+.+.|+..+|+.+++.+.+.. | -.+..|--+-.++...|+...|...|.+..+ +.|+.+...+-+.-+.+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p-----~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--P-----KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--c-----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 4558899999999999996632 1 1346888899999999999999999998875 45776655554444442
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..|++++|..-+. ..++..+. =.+.|+-|=.. +-..|+...|..-|++-... .|+
T Consensus 196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence 3477888877774 22222211 22345555444 66788888898888876654 232
Q ss_pred cc--ccchhHHhhccccccCCCchhh-----hhcCCCcC-HHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCC-HHH
Q 004610 319 GH--MKLNSQLLDGRSNLERGPDDQS-----RKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EAS 389 (742)
Q Consensus 319 ~~--ty~~~~li~~~~~~a~~~~~~m-----~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~t 389 (742)
-. -+|.|.+.. +.+.|+.. ......|+ .+.|.+ |-..|-..|.+|-|++.+++-.+. .|+ ...
T Consensus 251 f~dAYiNLGnV~k-----e~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~A 322 (966)
T KOG4626|consen 251 FLDAYINLGNVYK-----EARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDA 322 (966)
T ss_pred chHHHhhHHHHHH-----HHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHH
Confidence 11 111111111 11112111 12233443 233444 555566677777777777776553 343 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (742)
||.|..++-..|++.+|.+.++...... .-...+-+-|=..|...|.+++|..+|....+ +.|+ ....|-|-..|-
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK 399 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH
Confidence 7777777777777777777777655431 11233444566667777777777777766553 2343 234556666666
Q ss_pred HcCCHHHHHHHHHHHH
Q 004610 469 EAGKGDRVYYLLHKLR 484 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (742)
+.|++++|...+++-.
T Consensus 400 qqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEAL 415 (966)
T ss_pred hcccHHHHHHHHHHHH
Confidence 7777777776666553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-06 Score=58.79 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~ 226 (742)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00076 Score=82.77 Aligned_cols=230 Identities=8% Similarity=-0.026 Sum_probs=166.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhh
Q 004610 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (742)
Q Consensus 190 ~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em 269 (742)
+...|..+-.++.. |++.+|+..|.+.... .|+......+...+. ..|+.++|...|. ++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 44666666666665 8999999988887754 377554333444445 7799999999995 33
Q ss_pred cccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCc
Q 004610 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (742)
Q Consensus 270 ~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (742)
... . .+...+..+... +.+.|++++|...+++..+.. |+....
T Consensus 536 ~~~-~-p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH-D-MSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc-C-CCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 322 1 111223333334 678899999999999887653 322111
Q ss_pred CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHH
Q 004610 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPA 428 (742)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~l 428 (742)
+.. +.....+.|++++|...|++.... .|+...|..+-..+.+.|+.++|...+++.... .|+ ...++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223334569999999999998865 478889999999999999999999999997765 354 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-..+...|+.++|..++++..+.. .-+...+..+-.++...|++++|...|++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 668999999999999999988753 234667888889999999999999999998765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0014 Score=65.73 Aligned_cols=192 Identities=11% Similarity=0.030 Sum_probs=134.0
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.....++..+|.+.+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+-..+.
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~- 110 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC- 110 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH-
Confidence 3446789999999999885431 1234678888899999999999999999988653 223444444444444
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..|+.++|...| .+.......|.
T Consensus 111 ---------~~g~~~~A~~~~------------------------------------------------~~~~~~~~~~~ 133 (234)
T TIGR02521 111 ---------QQGKYEQAMQQF------------------------------------------------EQAIEDPLYPQ 133 (234)
T ss_pred ---------HcccHHHHHHHH------------------------------------------------HHHHhcccccc
Confidence 444455555444 44433211010
Q ss_pred ccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004610 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (742)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~ 398 (742)
....+.. +-..+...|++++|.+.|++..... +.+...+..+...+.
T Consensus 134 -------------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 134 -------------------------------PARSLEN-AGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred -------------------------------chHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 0111223 5566788899999999999887653 334667888889999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (742)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (742)
..|+.++|...+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999998776 344566777778888889999999998887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=5e-06 Score=57.64 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p 224 (742)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.9e-06 Score=57.04 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004610 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (742)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (742)
|||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555556555655556666655555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=78.36 Aligned_cols=288 Identities=10% Similarity=-0.042 Sum_probs=176.1
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
....++..+|.++|+.+.+.. |+. | ..+..++..+...++.++|++.+.++... .|+...|-.++..+.
T Consensus 112 y~~~gdyd~Aiely~kaL~~d--P~n---~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~-- 180 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD--PTN---P--DLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR-- 180 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC--CCC---H--HHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH--
Confidence 335578888888888885432 111 2 44456677788888888888888887654 456666644444443
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~ 319 (742)
..++..+|++.+. ++.+. .-.+.-.+.-++.+ +.+.|-...|.++..+ .|+.
T Consensus 181 --------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~------~p~~ 232 (822)
T PRK14574 181 --------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKE------NPNL 232 (822)
T ss_pred --------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHh------Cccc
Confidence 2344444777773 44443 21122222333333 4455555555544432 2333
Q ss_pred cccc---------hhHHh-hccc------------cccCCCchhhhh-cCCCc-CHHhhHHHH---HHHHHhhcCHHHHH
Q 004610 320 HMKL---------NSQLL-DGRS------------NLERGPDDQSRK-KDWSI-DNQDADEIR---LSEDAKKYAFQRGF 372 (742)
Q Consensus 320 ~ty~---------~~~li-~~~~------------~~a~~~~~~m~~-~g~~p-d~~tyn~~l---I~~~~k~g~~~~A~ 372 (742)
++-. ...++ .+.. +.+..-++.+.. .+-.| ...-|..+. +-++.+.|++.+++
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3222 00011 1100 011111222221 12223 222233333 35667888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (742)
Q Consensus 373 ~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (742)
+.|+.|...|.+.-..+--++.++|...+++++|+.++++..... ..++......|.-+|...+++++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999877556688899999999999999999999986542 233455567899999999999999999999
Q ss_pred HHHCC-------------CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 448 MLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 448 M~~~g-------------v~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.- -.||-..+ ..++..+...|+..+|.++++++...
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 98731 12333333 34566688999999999999999766
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0018 Score=77.97 Aligned_cols=283 Identities=9% Similarity=-0.059 Sum_probs=176.1
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HH
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL---LY 234 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~--~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~L---L~ 234 (742)
..+.|+...|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.. .|+...|..+ -.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 44778889999999998432 2221 233 88888899999999999999987 4433333333 33
Q ss_pred HHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcC
Q 004610 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (742)
Q Consensus 235 ~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G 314 (742)
.+. ..|+.++|+++|. ++.+. .-.+.-.+..++.. +.+.++.++|++.++.....
T Consensus 111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER- 165 (822)
T ss_pred HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence 555 6799999999995 55554 33333334455555 78889999999999988765
Q ss_pred CCCCccccchhHHhhcc---c--cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHH----------
Q 004610 315 QFSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC---------- 379 (742)
Q Consensus 315 ~~Pd~~ty~~~~li~~~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~---------- 379 (742)
.|+...|- .+..-+ . ..|...+.++... .|+...+-.-++....+.|-...|.++..+-.
T Consensus 166 -dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 166 -DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred -CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 45544442 221111 1 2355567777764 46554443336666777776666655443211
Q ss_pred --------------------------------------h-CCCCCCH-HHH-HHH---HHHHHHcCCHHHHHHHHHHHHH
Q 004610 380 --------------------------------------L-DEVPMNE-ASL-TAV---GRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 380 --------------------------------------~-~g~~pd~-~ty-n~L---i~~~~~~g~~~~A~~l~~~M~~ 415 (742)
. .+-.|.. .-| .+. +-++.+.|+..++.+.++.|..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 1 0111211 111 111 2255567777777777777777
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
.|...-.++--.+-++|...+..++|..+|+...... ..++......|.-+|...+++++|..+++++.+
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 7654333455567777777777777777777775432 123444456777777777777777777777776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.9e-06 Score=56.12 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (742)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0026 Score=78.23 Aligned_cols=217 Identities=11% Similarity=0.019 Sum_probs=154.0
Q ss_pred cCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCC
Q 004610 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (742)
Q Consensus 164 ~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~ 243 (742)
++.++|...+..-... .|+......+...+...|++++|...|+++... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6777888877776332 244344334445556899999999999997543 455555656666677
Q ss_pred cccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccc
Q 004610 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (742)
Q Consensus 244 ~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~ 323 (742)
+.|+.++|...+. ..... +..+...+..+... ....|++++|...+++..+. .|+
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~----- 608 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APS----- 608 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCC-----
Confidence 7899999999995 33322 11111111111112 23459999999999887654 233
Q ss_pred hhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004610 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (742)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~ 403 (742)
...|.. +-..+.+.|+.++|.+.|++..... +-+...++.+-..+...|+.
T Consensus 609 ---------------------------~~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 609 ---------------------------ANAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ---------------------------HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 233445 6778899999999999999988764 34567788888899999999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 404 ~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
++|+.++++..+. .| +...+..+-.++...|+.++|...+++..+..
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999987765 34 45667778888999999999999999988653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0018 Score=72.32 Aligned_cols=219 Identities=8% Similarity=-0.034 Sum_probs=153.6
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNV 231 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~-------~tyn~ 231 (742)
.....++.+.|.+.++++.+.. | -+...+..+...|.+.|++++|++++..+.+.+..++. .+|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3446789999999999985432 1 13377888999999999999999999999987765322 12333
Q ss_pred HHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHH
Q 004610 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (742)
Q Consensus 232 LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M 310 (742)
++.... .....+...++.. ++.+. .+ +.-..-.+... +...|+.++|.+++++.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333322 2222333333332 11111 01 22223344445 78899999999999877
Q ss_pred HHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHH
Q 004610 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (742)
Q Consensus 311 ~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 390 (742)
.+. .||.. .+++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred Hhc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 663 22221 114455566799999999999988763 3455678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
.++-+.|.+.|++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999998765 6999999999999999999999999998654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.4e-05 Score=52.84 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi 222 (742)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.021 Score=65.38 Aligned_cols=298 Identities=11% Similarity=0.041 Sum_probs=186.1
Q ss_pred HHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004610 158 QKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (742)
Q Consensus 158 ~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (742)
..+.+.|+.++|++.+++-... +...+..+-..-..+.+.|+.++|..+|..+.+.+ |+-..|-..+..+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 3556889999999999875221 22223455566688899999999999999999875 66666665555554
Q ss_pred ccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCCh-HHHHHHHHHHHHcCCC
Q 004610 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQF 316 (742)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~-~~A~~lf~~M~~~G~~ 316 (742)
.... .-.....+....+++ ++.....-.+.+-.=.|. +.....| ..+...+..+..+|++
T Consensus 83 g~~~----~~~~~~~~~~~~~y~-------~l~~~yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 83 GLQL----QLSDEDVEKLLELYD-------ELAEKYPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred hhhc----ccccccHHHHHHHHH-------HHHHhCccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhcCCc
Confidence 1110 001224566666664 332221000111111110 2222233 4556777788888865
Q ss_pred CCccccc-----------hhHHhhccccc--cCCCchhh-hhcCCCcCHHhhHHHHH-HHHHhhcCHHHHHHHHHHHHhC
Q 004610 317 SNGHMKL-----------NSQLLDGRSNL--ERGPDDQS-RKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKMCLD 381 (742)
Q Consensus 317 Pd~~ty~-----------~~~li~~~~~~--a~~~~~~m-~~~g~~pd~~tyn~~lI-~~~~k~g~~~~A~~lf~~M~~~ 381 (742)
+--...- ...++.++... ....+..- ....-.|....|...++ ..|-..|+.++|++.+++-.+.
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4222221 11222222110 00011100 01122455555655444 5577899999999999988876
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004610 382 EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (742)
Q Consensus 382 g~~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (742)
.|+ +-.|..-.+.+-+.|++++|.+.+++-..... -|.+.=+-....+.++|++++|.+++......+..|-...+
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 354 67788889999999999999999999877643 57777788999999999999999999999877754433221
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 461 --------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 461 --------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
...-.+|.+.|++..|++-|+.+.+.
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33346678999999888877766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0036 Score=72.95 Aligned_cols=213 Identities=10% Similarity=-0.012 Sum_probs=106.8
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004610 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (742)
Q Consensus 165 ~~~~A~~v~~~m~~~g~~~~~~~~P~-~~tyn~lI~~~~---------~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~ 234 (742)
...+|.+.|++-.+. .|+ ...|..+-.++. ..+++++|...+++..+.. +-+...+..+-.
T Consensus 276 ~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788888887432 232 234444333332 3345889999999888643 224556665555
Q ss_pred HHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcC
Q 004610 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (742)
Q Consensus 235 ~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G 314 (742)
.+. ..|+.++|...|+ +..+. +-.+...|..+-.. +...|++++|...+++..+..
T Consensus 347 ~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 347 INT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC
Confidence 555 5677777777774 22222 11122223333333 555666666666666655432
Q ss_pred CCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 004610 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAV 393 (742)
Q Consensus 315 ~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~L 393 (742)
|+...+ +.. +...+...|++++|.+.+++..... .| +...+..+
T Consensus 403 --P~~~~~-------------------------------~~~-~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~l 447 (553)
T PRK12370 403 --PTRAAA-------------------------------GIT-KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQ 447 (553)
T ss_pred --CCChhh-------------------------------HHH-HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHH
Confidence 221110 001 2222334556666666666654432 23 23334555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
-..+...|+.++|...+.++... .|+..+ .+.+-..|+..| ++|...++.+.
T Consensus 448 a~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 448 VMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 55556666666666666654332 233222 222333344444 35555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.006 Score=69.02 Aligned_cols=277 Identities=16% Similarity=0.090 Sum_probs=182.9
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcccc
Q 004610 165 NDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLCSSAAV 241 (742)
Q Consensus 165 ~~~~A~~v~~~m~~~g~~~~~~~~P~~-~tyn~lI~~~~~~g~~~~A~~lf~~M~~~G--i~pd~~tyn~LL~~~~~~~~ 241 (742)
+..+|...|..+ |.. .+|+ ++..-+=.+|...++.++|.++|+...+.. ..-+...|++.|-=+-+.
T Consensus 334 ~~~~A~~~~~kl------p~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 334 NCREALNLFEKL------PSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHhh------HHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 345677777765 221 2222 444445578889999999999999998532 223778999988765511
Q ss_pred CCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCC-Ccc
Q 004610 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH 320 (742)
Q Consensus 242 ~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P-d~~ 320 (742)
-++.++. +++.+. +-..-.||.++=++ |.-.++.+.|.+.|+.-.+. .| .++
T Consensus 404 ------------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY 456 (638)
T KOG1126|consen 404 ------------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY 456 (638)
T ss_pred ------------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence 1222332 333332 22245679999999 99999999999999866543 34 445
Q ss_pred ccchhHHhhccccccCCCchh-hh--hcCCCcCHHhhHHH--HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004610 321 MKLNSQLLDGRSNLERGPDDQ-SR--KKDWSIDNQDADEI--RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (742)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~-m~--~~g~~pd~~tyn~~--lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~ 395 (742)
+|+ +-|+...+..-|+. |. .+.+..|...||.. |=-.|.|.++++.|.--|++..+-+ +-|.+....+..
T Consensus 457 ayT----LlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~ 531 (638)
T KOG1126|consen 457 AYT----LLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGR 531 (638)
T ss_pred hhh----hcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhH
Confidence 554 33333111111111 11 23455677777762 3356778999999998888877654 346777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHH
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGD 474 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~ 474 (742)
.+-+.|+.|+|++++++-....-+--..-|. ....+...++.++|+..++++++. .|+. ..|-.|-..|.+-|+.+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccch
Confidence 8889999999999999876553322233333 344456678999999999999864 5665 45667778888999999
Q ss_pred HHHHHHHHHHHc
Q 004610 475 RVYYLLHKLRTS 486 (742)
Q Consensus 475 ~A~~ll~~M~~~ 486 (742)
.|+.=|.-+.+.
T Consensus 609 ~Al~~f~~A~~l 620 (638)
T KOG1126|consen 609 LALLHFSWALDL 620 (638)
T ss_pred HHHHhhHHHhcC
Confidence 998888777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0028 Score=73.93 Aligned_cols=89 Identities=7% Similarity=-0.096 Sum_probs=41.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~ 435 (742)
+-..|...|++++|.+.+++..+.. |+ ...+..++..+...|+.++|...+++..+.. .|+ ...+..+-.++...
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhC
Confidence 3344555566666666666555432 22 1122223333444555666666655544331 132 22233344444555
Q ss_pred CCHHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHML 449 (742)
Q Consensus 436 g~~~~A~~l~~~M~ 449 (742)
|+.++|.+.++++.
T Consensus 455 G~~~eA~~~~~~~~ 468 (553)
T PRK12370 455 GKHELARKLTKEIS 468 (553)
T ss_pred CCHHHHHHHHHHhh
Confidence 66666666655543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0073 Score=68.42 Aligned_cols=241 Identities=12% Similarity=0.023 Sum_probs=157.5
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCC-CCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH----HHH
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQ----YHY 229 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~-~~P~~~ty-n~lI~~~~~~g~~~~A~~lf~~M~~---~Gi~pd~----~ty 229 (742)
.....++.+.|..+++.-.+. .++..| ..|.+.+. +.+=..|...+++++|..+|.++.. ..+-++. .++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 566778999999999986543 111122 23443332 3355678888999999999999872 2222222 344
Q ss_pred HHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHH
Q 004610 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (742)
Q Consensus 230 n~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~ 309 (742)
+.|=.+|+ +.|++++|...++ .|.+++.+
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~ 315 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK 315 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH
Confidence 44444566 7777777777663 44455544
Q ss_pred HHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh---CCCCCC
Q 004610 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMN 386 (742)
Q Consensus 310 M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~g~~pd 386 (742)
..|.. .|.+.+.-+-+...|+..+++++|..++....+ .-..++
T Consensus 316 --~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 316 --LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred --hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 11111 112222222277778888899999888875432 112222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C--CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHH----HC
Q 004610 387 ----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G--INPR-LRSYGPALSVFCNNGDVDKACSVEEHML----EH 451 (742)
Q Consensus 387 ----~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~----g--~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~----~~ 451 (742)
.-+|+.|-..|-+.|++++|.+++++.... + ..+. -..++-|=..|.+.+..++|.++|.+-. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 267999999999999999999999987543 1 1222 3455556677888899999999997743 33
Q ss_pred CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 452 GVY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 452 gv~-pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
|.. |+ ..+|.-|...|.+.|++++|.++.+...
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 322 33 4678999999999999999999988775
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.4e-05 Score=51.55 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.011 Score=63.20 Aligned_cols=282 Identities=12% Similarity=-0.005 Sum_probs=187.0
Q ss_pred hcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 004610 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (742)
Q Consensus 163 ~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (742)
.|++..|+++..+-.+ .+..|- ..|-.-..+.-+.||.+.|-....+..+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae------~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAE------HGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhh------cCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 4889999999888633 233344 7788888899999999999999999987644566777777777777
Q ss_pred CcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcccc
Q 004610 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (742)
Q Consensus 243 ~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty 322 (742)
..|+.+.|..-.+.. .+|.. .+...-.....+ |.+.|++.+...++.+|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~p----r~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTP----RHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCc----CChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 667777776666411 12221 144445666677 99999999999999999999876555332
Q ss_pred c------hhHHhhccc-cccCC---Cchhhhhc-CCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004610 323 L------NSQLLDGRS-NLERG---PDDQSRKK-DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (742)
Q Consensus 323 ~------~~~li~~~~-~~a~~---~~~~m~~~-g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn 391 (742)
- .+.|-++-. ..+.. .+.....+ .-.|..++ + ++.-+.+.|+-++|.++..+-.+.+..|...
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~--~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~--- 299 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVV--A-YAERLIRLGDHDEAQEIIEDALKRQWDPRLC--- 299 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHH--H-HHHHHHHcCChHHHHHHHHHHHHhccChhHH---
Confidence 1 011111111 11111 11111111 11233221 2 6677888999999999998888887766621
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M-~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (742)
..-.+.+-++.+.-.+..+.- +..+..| -.+.+|=.-|.+.+.+.+|.+.|+.-.+ ..|+..+|+-+-+++.+.
T Consensus 300 -~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 300 -RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred -HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 122344566666555555543 3445666 4455566667888999999999995554 469999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 004610 471 GKGDRVYYLLHKLRTS 486 (742)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (742)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999888776543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=58.49 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEA 462 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (742)
..|.-|...++.....-+|..++..|+ .|.+.+|+.++.+.++.. .+-+.+.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334444445555555566666666665 566666666666555532 23345566777777777777777777
Q ss_pred HHHHHHH
Q 004610 463 LLRVSVE 469 (742)
Q Consensus 463 Li~~~~~ 469 (742)
+|..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.013 Score=65.75 Aligned_cols=230 Identities=10% Similarity=-0.036 Sum_probs=147.3
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
....++.+.|...++.+.+.. |+ +...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++...
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345788999999999995542 21 33678899999999999999999999999987643332212222222100
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
-. +.......+....... ...+ ... +.-.+-.+... +...|+.++|.+++++..+.. ||
T Consensus 236 l~---~~~~~~~~~~L~~~~~-------~~p~--~~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~~--pd 295 (409)
T TIGR00540 236 LD---EAMADEGIDGLLNWWK-------NQPR--HRRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKKL--GD 295 (409)
T ss_pred HH---HHHHhcCHHHHHHHHH-------HCCH--HHhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhhC--CC
Confidence 00 0001111122222221 1110 000 22234445555 889999999999999887752 33
Q ss_pred ccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 004610 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGR 395 (742)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~Li~ 395 (742)
..... +-.+..-.....++.+.+.+.++...+. .|+. ....++-.
T Consensus 296 ~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~ 343 (409)
T TIGR00540 296 DRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQ 343 (409)
T ss_pred cccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHH
Confidence 32210 0010112233456778888888776654 3433 45568888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
.+.+.|++++|.+.|+........|+...+..+-..+.+.|+.++|.++|++-
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999996445455799999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=73.44 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=94.7
Q ss_pred HhhHHHHHHHHHhhcCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004610 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (742)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (742)
+.... +++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..++|+.+++.=...|+-||..|||.||
T Consensus 67 ~dld~-fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 67 LDLDI-FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHH-HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33334 677777777888888888888765 222233455699999999999999999998888889999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (742)
+.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888888888887777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.026 Score=60.91 Aligned_cols=125 Identities=11% Similarity=0.097 Sum_probs=99.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+-+.|--..+...|++++-+... -++-|....+-|-+.|-+.|+-..|++.+-+--.. +..|+.|..-|-..|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 44566667778888888755433 24457788999999999999999999987664333 66678888878888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~ll~~M~~~ 486 (742)
+++|...|+... =+.|+..-|..||..| .+.|++.+|+++++.+..+
T Consensus 642 ~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 642 SEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999998754 3689999999999776 5689999999999999876
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.002 Score=57.13 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=67.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHCCCCCChhhHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGD--------GDMAFDMVKRMKSLGINPRLRSYGPA 428 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~Li~~~~~~g~--------~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (742)
.|..+...+++.....+|+.+++.|+ .|++.+||.++++.++..- +-+.+.++..|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 56666677999999999999999999 8999999999999987442 33678899999999999999999999
Q ss_pred HHHHHHc
Q 004610 429 LSVFCNN 435 (742)
Q Consensus 429 I~~~~~~ 435 (742)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.033 Score=58.23 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=90.4
Q ss_pred cccchhhhhhhhhhHHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHc-
Q 004610 143 IGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLR-VELDMCSKRGDVMGAIRLYDKAQRE- 220 (742)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn-~lI~~~~~~g~~~~A~~lf~~M~~~- 220 (742)
+....++.+|..+. ...++|.++|-+|.+ ..|.++--+ +|=+.|-+.|.++.|+.+...+.++
T Consensus 35 lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp 99 (389)
T COG2956 35 LSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP 99 (389)
T ss_pred ccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC
Confidence 44445566666666 577899999999955 233334444 4556678889999999999988754
Q ss_pred CCCCCHHHHH--HHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccC
Q 004610 221 GIKLGQYHYN--VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSY 298 (742)
Q Consensus 221 Gi~pd~~tyn--~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g 298 (742)
++.-+..... -|=.=|- .+|-+++|.++|. .+++...+. .-.---|+.- |-+..
T Consensus 100 dlT~~qr~lAl~qL~~Dym----------~aGl~DRAE~~f~-------~L~de~efa-~~AlqqLl~I------YQ~tr 155 (389)
T COG2956 100 DLTFEQRLLALQQLGRDYM----------AAGLLDRAEDIFN-------QLVDEGEFA-EGALQQLLNI------YQATR 155 (389)
T ss_pred CCchHHHHHHHHHHHHHHH----------HhhhhhHHHHHHH-------HHhcchhhh-HHHHHHHHHH------HHHhh
Confidence 4444333222 2222344 7899999999995 445432222 1123345555 88899
Q ss_pred ChHHHHHHHHHHHHcCCCC
Q 004610 299 RFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 299 ~~~~A~~lf~~M~~~G~~P 317 (742)
++++|.++-+++...|-.+
T Consensus 156 eW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHHHHHHHHHHcCCcc
Confidence 9999999999999986444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.26 Score=54.00 Aligned_cols=238 Identities=13% Similarity=0.067 Sum_probs=170.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC--
Q 004610 201 CSKRGDVMGAIRLYDKAQREGI-K-LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-- 276 (742)
Q Consensus 201 ~~~~g~~~~A~~lf~~M~~~Gi-~-pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-- 276 (742)
.-...|+++|+.+|++..+..- + -|..+|+.+|..--. ++.-.--|..++. +.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~--------------idKy 328 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN--------------IDKY 328 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH--------------hccC
Confidence 3455799999999999997631 1 378899999977662 1222234555552 21
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHH
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (742)
..-|+.++-+. |.-.++.+.|...|+.-.+.. |....-.+
T Consensus 329 R~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN----------------------------------p~~~~aWT 368 (559)
T KOG1155|consen 329 RPETCCIIANY------YSLRSEHEKAVMYFKRALKLN----------------------------------PKYLSAWT 368 (559)
T ss_pred CccceeeehhH------HHHHHhHHHHHHHHHHHHhcC----------------------------------cchhHHHH
Confidence 33355555555 788888999999998776642 11111123
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (742)
.|=..|....+...|.+-++...+-. +.|--.|=.|=.+|.-.+.+.-|+-.|++-.+- ..-|.+.|.+|=.+|.+.+
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLN 446 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhc
Confidence 24477777788888888888877643 568888999999999999999999999876543 2346899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---cCCCChhHHHH---HHHHhhc
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS---VRKVSPSTADV---IAKWFNS 504 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---~~~~~p~t~~~---I~~~~~~ 504 (742)
++++|...|.+....|-. +...|..|-+.|-+-++.++|...|.+-.+. ....+|.|..+ +..+|..
T Consensus 447 ~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 999999999999887733 6688999999999999999999988776653 11245555433 5555543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.022 Score=63.89 Aligned_cols=281 Identities=11% Similarity=-0.001 Sum_probs=166.6
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~ 238 (742)
+...|+..+|..-+-+-.+.. |. =.+.|+-|=..+-..|+.-.|+.-|++...- .|+ ...|-.|=..|.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q--p~-----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k- 263 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ--PC-----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK- 263 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC--Cc-----eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH-
Confidence 346788888888877754321 11 1256777777788888888888888887642 232 223444444444
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
..+.+++|...+. +.+..+ -...+.|..|--. |-..|.+|.|..-+++-.+. .|+
T Consensus 264 ---------e~~~~d~Avs~Y~------rAl~lr--pn~A~a~gNla~i------YyeqG~ldlAI~~Ykral~~--~P~ 318 (966)
T KOG4626|consen 264 ---------EARIFDRAVSCYL------RALNLR--PNHAVAHGNLACI------YYEQGLLDLAIDTYKRALEL--QPN 318 (966)
T ss_pred ---------HHhcchHHHHHHH------HHHhcC--CcchhhccceEEE------EeccccHHHHHHHHHHHHhc--CCC
Confidence 3444444444442 100000 0011222222222 44444444444444443332 222
Q ss_pred c-cccchhHHhhcccc-----ccCCCchhhhhcCCCc-CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCC-HHHH
Q 004610 319 G-HMKLNSQLLDGRSN-----LERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASL 390 (742)
Q Consensus 319 ~-~ty~~~~li~~~~~-----~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~ty 390 (742)
- ..|+ -|-+++.+ +|...+..... +.| -..+.|+ |-+.|...|.+++|..+|..-.+- -|. ...+
T Consensus 319 F~~Ay~--NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N-Lgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~ 391 (966)
T KOG4626|consen 319 FPDAYN--NLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN-LGNIYREQGKIEEATRLYLKALEV--FPEFAAAH 391 (966)
T ss_pred chHHHh--HHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH-HHHHHHHhccchHHHHHHHHHHhh--Chhhhhhh
Confidence 1 2233 22222221 11111111111 011 1123445 778899999999999999887653 343 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (742)
|.|...|-..|++++|...+++.. .++|+. ..|+-+=..|-..|+++.|.+.+.+.+.- .|. ....+-|-..|-
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYK 467 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhh
Confidence 999999999999999999998854 467764 56777777788889999999999887753 454 345677888899
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 004610 469 EAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (742)
.+|++.+|..-+++-..-
T Consensus 468 DsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ccCCcHHHHHHHHHHHcc
Confidence 999999999988876543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0035 Score=62.25 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc----------------CCHHHHHH
Q 004610 385 MNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN----------------GDVDKACS 443 (742)
Q Consensus 385 pd~~tyn~Li~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~----------------g~~~~A~~ 443 (742)
.|..+|..+|+.|.+ .|.++=....++.|.+.|+.-|+.+|+.||+.+=+. .+.+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 456666666666664 355666666667777777777777777777766542 13467899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 004610 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKL 483 (742)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M 483 (742)
++++|+..|+.||..|+..|++.+.+.+..- +..+++--|
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999998887643 333443333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.097 Score=59.98 Aligned_cols=268 Identities=13% Similarity=0.066 Sum_probs=174.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc
Q 004610 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN-VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (742)
Q Consensus 199 ~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn-~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~ 277 (742)
..+...|++++|++.+..-. ...+|..++- ..-..+. +.|+.++|..++. ++.+. +..|
T Consensus 12 ~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn 71 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDN 71 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCc
Confidence 34678899999999997643 3345655554 4455566 8899999999994 66654 3334
Q ss_pred cccccccccccccccccc-----ccCChHHHHHHHHHHHHcCCCCCccccchhHHh-h-----ccccccCCCchhhhhcC
Q 004610 278 NGQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLL-D-----GRSNLERGPDDQSRKKD 346 (742)
Q Consensus 278 ~vtyn~lI~~~~~~~~~~-----~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li-~-----~~~~~a~~~~~~m~~~g 346 (742)
.--|..+..+ .. .....+....+++++...- |-....- .+. + .+...+...+..+..+|
T Consensus 72 ~~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 72 YDYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred HHHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4446666666 31 2235677788888886653 3222221 111 1 11123334555566777
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMV 410 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------~~pd~~--tyn~Li~~~~~~g~~~~A~~l~ 410 (742)
+++ ++++ |-..|......+-..+++...... | -.|... ++.-|..-|-..|+.++|++++
T Consensus 142 vPs---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 142 VPS---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred Cch---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 543 3445 666676666666666666665432 1 124443 4455667777899999999999
Q ss_pred HHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 004610 411 KRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (742)
Q Consensus 411 ~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~ 489 (742)
++-.+. .|+ +..|..--..|-+.|++++|.+.+++..... .-|...-+-....+.++|++++|.+++........+
T Consensus 218 d~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 218 DKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 987765 465 4566666677888999999999999988765 347777788888899999999999999999777333
Q ss_pred CChhHHHHHHHHhh
Q 004610 490 VSPSTADVIAKWFN 503 (742)
Q Consensus 490 ~~p~t~~~I~~~~~ 503 (742)
+..+...+=..||.
T Consensus 295 ~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 295 PLSNLNDMQCMWFE 308 (517)
T ss_pred cccCHHHHHHHHHH
Confidence 33334444344443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0085 Score=66.42 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=106.7
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 374 lf~~M~~---~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
++..|.. .+.+.+.+....+++.+....+++++.+++...... ...-...|..++|..|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4555543 355678889999999999999999999999988765 33334456679999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH-HHHHhhc
Q 004610 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (742)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~ 504 (742)
...|+-||..|||.||+.+.+.|++..|.++..+|......-.|.|+.. +..+++-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987744455667655 4444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.2 Score=53.91 Aligned_cols=143 Identities=15% Similarity=0.036 Sum_probs=96.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-------~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (742)
....|.+.|++.....++.+|.+.|+--|+ .+|+.+++-....+..+.-...+++...+ .+-+...-.+++.
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~ 271 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAE 271 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHH
Confidence 678888999999999999999888866554 46777777666666666555555554433 3344555566677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 004610 431 VFCNNGDVDKACSVEEHMLEHGVYPEE------------------------------PELEALLRVSVEAGKGDRVYYLL 480 (742)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~------------------------------~ty~~Li~~~~~~g~~~~A~~ll 480 (742)
-+.++|+.++|.++.++-.+++..|+. -.+.+|=..|.+.+.+.+|.+.|
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777777665554433332 34566667778888888888888
Q ss_pred HHHHHccCCCChhHHHHHHHHhh
Q 004610 481 HKLRTSVRKVSPSTADVIAKWFN 503 (742)
Q Consensus 481 ~~M~~~~~~~~p~t~~~I~~~~~ 503 (742)
+.-.+. .++.++|+.+...+.
T Consensus 352 eaAl~~--~~s~~~~~~la~~~~ 372 (400)
T COG3071 352 EAALKL--RPSASDYAELADALD 372 (400)
T ss_pred HHHHhc--CCChhhHHHHHHHHH
Confidence 866555 666667766544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.17 Score=57.52 Aligned_cols=212 Identities=14% Similarity=0.074 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchh
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~---Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~e 268 (742)
.+..-+-..|...|+++.|..+|.+..+. +.-.+.-...+++..|+ .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a--------------------~~--------- 250 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA--------------------LV--------- 250 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH--------------------HH---------
Confidence 45566788888999999999988877643 11112222223333222 11
Q ss_pred hcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCC
Q 004610 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (742)
Q Consensus 269 m~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (742)
|...+++++|..+|+++.. .....+... .
T Consensus 251 -------------------------y~~~~k~~eAv~ly~~AL~-------------i~e~~~G~~-------------h 279 (508)
T KOG1840|consen 251 -------------------------YRSLGKYDEAVNLYEEALT-------------IREEVFGED-------------H 279 (508)
T ss_pred -------------------------HHHhccHHHHHHHHHHHHH-------------HHHHhcCCC-------------C
Confidence 6667777888888877754 222222110 1
Q ss_pred c-CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C
Q 004610 349 I-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVP-MNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSL---G 417 (742)
Q Consensus 349 p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~g~~-pd~-~tyn~Li~~~~~~g~~~~A~~l~~~M~~~---g 417 (742)
| -..++++ |-..|++.|++++|...++...+ .|.. |.+ .-++.+...|+..+++++|..++..-.+. -
T Consensus 280 ~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 1234555 66789999999888877764321 1222 333 34677888899999999999998764322 1
Q ss_pred CCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 418 INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 418 ~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~------gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
..++ .-+|+-|=..|-..|+.++|.++|++.+.. +..+. -..++-|-..|.+.+...+|.++|.+-.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 2233 367888888999999999999999987653 22232 4567788888899999999999987643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.25 Score=58.14 Aligned_cols=297 Identities=12% Similarity=0.028 Sum_probs=179.1
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (742)
.+.+++..|.-.|.+-++... ++.-.+--=+..|-+.|+...|..-|.+|....-..|-.-+-.+|...++.
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p-------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~- 289 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANP-------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY- 289 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH-
Confidence 345556666666666543221 121222223456778889999998888887643222333344444443321
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC--
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-- 318 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd-- 318 (742)
+...+..+.|.+.+. ...-...+....-.+|+++.- +.+...++.|......+..+...+|
T Consensus 290 -----~~~~~~~e~a~~~le------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 290 -----FITHNERERAAKALE------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred -----HHHhhHHHHHHHHHH------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCChh
Confidence 114455577887774 111111111133347777777 8888999999999888887433333
Q ss_pred --------------------ccccchh--HHhhccc-cc----cCCCchhhhhcCCCc--CHHhhHHHHHHHHHhhcCHH
Q 004610 319 --------------------GHMKLNS--QLLDGRS-NL----ERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKYAFQ 369 (742)
Q Consensus 319 --------------------~~ty~~~--~li~~~~-~~----a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g~~~ 369 (742)
..+|... .+.-++. .. .+-+.+-.....+.| ++--|-. +..+|...|++.
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~~~~ 431 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIGKYK 431 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhcccHH
Confidence 3333211 1111111 11 111333333333222 3334555 678999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 370 ~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
+|+++|..+...-.--+...|--+-++|-..|..++|.+.++..... .|+. -.=-+|=.-+-+.|+.|+|.+.++.|
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 99999999988766677889999999999999999999999987654 2332 11122334466789999999999886
Q ss_pred H--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 449 L--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 449 ~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
. ..+..|+....-...+.|...|+.++-......|..
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4 234556666666667777888888775555555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0066 Score=60.36 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=74.5
Q ss_pred CHHhhHHHHHHHHHh-----hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHH
Q 004610 350 DNQDADEIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFD 408 (742)
Q Consensus 350 d~~tyn~~lI~~~~k-----~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~----------------g~~~~A~~ 408 (742)
|..+|.. +|+.|.+ .|.++=...-+..|.+-|+.-|..+|+.||+.+=+. .+.+-|++
T Consensus 46 ~K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3334444 5555553 477787888889999999999999999999976542 23457999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHH
Q 004610 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDV-DKACSVEEHM 448 (742)
Q Consensus 409 l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~-~~A~~l~~~M 448 (742)
++++|+..|+.||..|+..||+.|++.+.. .+.++++--|
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999887753 3344444333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.23 Score=49.96 Aligned_cols=208 Identities=13% Similarity=0.022 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccC
Q 004610 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (742)
Q Consensus 194 yn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~ 273 (742)
.--|--+|-..|+...|..-+++..+.. +-+..+|.++-..|- +.|..+.|.+.|. .-+.-.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~p 100 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLAP 100 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcCC
Confidence 3344467899999999999999998753 224567888888888 8899999999985 2222221
Q ss_pred CCCcccc-cccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHH
Q 004610 274 DMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (742)
Q Consensus 274 g~~~~vt-yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (742)
+-.|+.. |.+. +|..|++++|...|++-... |+-.+- ..
T Consensus 101 ~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~----------------------------s~ 140 (250)
T COG3063 101 NNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP----------------------------SD 140 (250)
T ss_pred CccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc----------------------------ch
Confidence 1112222 4333 88899999999999877664 221111 12
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (742)
||.+ +--+..+.|+.+.|.+.|.+-.+.. +-...+.-.+.+...+.|+.-.|..+++.....|. ++..+.-..|.--
T Consensus 141 t~eN-~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iria 217 (250)
T COG3063 141 TLEN-LGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIA 217 (250)
T ss_pred hhhh-hHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHH
Confidence 4445 4444457889999999998876643 12234667788888888888888888888776655 7877777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (742)
-+.|+.+.|-+.=..+... -|....|...
T Consensus 218 k~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 218 KRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 7788888777766555543 4555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.039 Score=59.64 Aligned_cols=285 Identities=11% Similarity=0.084 Sum_probs=173.2
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (742)
+.+.++.+.|.+++.-+..+..+... -..+=-+++..+--..++.+|.+.-+... +..-||.---.--..
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~s----aaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTAS----AAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGN 498 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhH----HHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCc
Confidence 45667888888888877544332222 11111122333333446777777766654 333444333222211
Q ss_pred ccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
.. + -.|++++|.+.+. |...+ +.. ....||+-+.+ -..|++++|++.|-++...-.---
T Consensus 499 ~~----f-~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 499 IA----F-ANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred ee----e-ecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHHHHhhH
Confidence 00 0 4588888888885 33332 111 11226665554 456888999888876643211111
Q ss_pred ccccchhHHhhccc---cccCCCchhhhhcCCCcC-HHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004610 319 GHMKLNSQLLDGRS---NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (742)
Q Consensus 319 ~~ty~~~~li~~~~---~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li 394 (742)
.+.| .+-+-|. +.+..+---|....+.|+ ....+. |-+.|-+.|+-..|++.+-+-- +-++-|..|..-|-
T Consensus 559 evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ 633 (840)
T KOG2003|consen 559 EVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLA 633 (840)
T ss_pred HHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHH
Confidence 1222 2222222 222222222344455664 444445 8889999999999988765532 23566888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004610 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (742)
.-|....-++.|...|+.- .=+.|+..-|-.+|..|.+ .|+..+|+++|.....+ +.-|..+..-|++.+...|..
T Consensus 634 ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999999999999999863 3478999999999887665 79999999999998755 567888888899888777743
Q ss_pred HHHHHHHHHH
Q 004610 474 DRVYYLLHKL 483 (742)
Q Consensus 474 ~~A~~ll~~M 483 (742)
++.++-+++
T Consensus 711 -d~key~~kl 719 (840)
T KOG2003|consen 711 -DAKEYADKL 719 (840)
T ss_pred -hHHHHHHHH
Confidence 344444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.18 Score=53.85 Aligned_cols=217 Identities=11% Similarity=-0.040 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccccc
Q 004610 205 GDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (742)
Q Consensus 205 g~~~~A~~lf~~M~~~-Gi~pd~--~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vty 281 (742)
+..+.++.-+.++... .+.|+. ..|..+=..+. ..|+.++|...|. +.... ...+...|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~ 101 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADAY 101 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHHH
Confidence 4557777888887743 233332 33444444555 7788999998885 33322 22244457
Q ss_pred ccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHH
Q 004610 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (742)
Q Consensus 282 n~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (742)
+.+-.. +...|++++|...|+...+. .|+- ..+|.. +-..
T Consensus 102 ~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~~ 141 (296)
T PRK11189 102 NYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGIA 141 (296)
T ss_pred HHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHH
Confidence 766666 88999999999999887764 2332 223334 5566
Q ss_pred HHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 004610 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (742)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (742)
+...|++++|.+.|+...... |+..........+...++.++|...|.+.... ..|+...+ .+. ....|+..++
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCHH
Confidence 778899999999999887653 54332222233344677899999999775433 33443222 222 2335665554
Q ss_pred HHHHHHHHHC---CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 442 CSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 442 ~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.++.+.+. .+ .| ....|..|-..+.+.|+.++|...|++-.+.
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 355555432 11 11 2357888888999999999999999998776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.32 Score=53.81 Aligned_cols=143 Identities=12% Similarity=0.025 Sum_probs=115.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHH
Q 004610 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (742)
Q Consensus 296 ~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf 375 (742)
..|..++|+..++++... .||.+.|.....+-+.+.++.++|.+.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~----------------------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA----------------------------------QPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred HhcccchHHHHHHHHHHh----------------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456778888888876554 3555555676889999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004610 376 EKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (742)
Q Consensus 376 ~~M~~~g~~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (742)
+.+... .|+ ....-.+-.++.+.|++.+|..+++.-... .+-|...|..|=.+|...|+..+|..-..++
T Consensus 364 ~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------ 434 (484)
T COG4783 364 KKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------ 434 (484)
T ss_pred HHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------
Confidence 999875 466 566667888999999999999999997655 5678899999999999999999988877654
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
|...|+++.|...+..-++....-.|+
T Consensus 435 ------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 435 ------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred ------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 577899999999998887774444444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=62.36 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=86.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (742)
.|..|.+.++++.|.+.++.|.+.. .| .+.+-|..++.. ...+.+|+-+|+++... ..++..+.|.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 6778888899999999999988753 34 445556665553 23588899999997654 6678888888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (742)
..|++++|.+++++..... .-|..|..-+|-.....|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8899999999888876543 22455666667776777777 6777888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.55 Score=51.03 Aligned_cols=230 Identities=10% Similarity=-0.042 Sum_probs=129.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcc
Q 004610 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (742)
Q Consensus 199 ~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~ 278 (742)
..+...|++++|.+++++..+.. +-|...++. ...+.... ...|....+.+.+. . .. ...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~--~~-~~~~~ 112 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L--WA-PENPD 112 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c--cC-cCCCC
Confidence 34567789999999999887642 233444442 11111000 03455555666553 1 00 11122
Q ss_pred ccc--ccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHH
Q 004610 279 GQL--DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (742)
Q Consensus 279 vty--n~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (742)
..| ..+-.. +...|++++|...+++..+.. |+..... .
T Consensus 113 ~~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~--------------------------------~ 152 (355)
T cd05804 113 YWYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV--------------------------------H 152 (355)
T ss_pred cHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH--------------------------------H
Confidence 222 222233 678899999999999888753 4442221 1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHH
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PAL 429 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~-~pd~--~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-~--~lI 429 (742)
.+-..|...|++++|.+.+++.....- .|+. ..|..+...+...|+.++|..++++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 255677788999999999988766421 2333 3466788888899999999999988753321 2222211 2 233
Q ss_pred HHHHHcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.-+-..|..+.+.+. ......... ............++...|+.++|..++..+...
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 334444544333332 221111111 111122235666677888999999999888775
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.06 Score=59.46 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=96.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
|+..+...++++.|.++|+++.+.. |+.. ..|++.+...++-.+|.+++++..+. ..-+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 5566667789999999999999875 6643 45888888889999999999988754 22244444444556788999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
.+.|.++.+++... .|+. .+|..|..+|.+.|+++.|+..++.+.-
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999865 5665 5999999999999999999999988843
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.061 Score=56.96 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (742)
+|-. ++...-+.+.++.|..+|.+.++.+ +...+....++|.-+ ..++.+.|.++|+...+. +.-+...|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 5556 7788888899999999999998653 345555555555433 356777799999998876 55677788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~----~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.|+.+.|+.+|++.... .|.. ..|...|+.=.+.|+.+.+.++..++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999866 3443 48999999999999999999999999886
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.4 Score=50.43 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=159.7
Q ss_pred cCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHH
Q 004610 179 KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLD 257 (742)
Q Consensus 179 ~g~~~~~~~~P~~~ty-n~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~ 257 (742)
.+.....+..-| .=| +-+=.+|-+-|.+.+|...|..-... .|-+.||-.|-++|. +....+.|+.
T Consensus 211 a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~ 277 (478)
T KOG1129|consen 211 AKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALL 277 (478)
T ss_pred ccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHH
Confidence 333334444445 333 44567889999999999999887765 456678888889999 7778889999
Q ss_pred HhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCC
Q 004610 258 TFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG 337 (742)
Q Consensus 258 ~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~ 337 (742)
+|. +-.+ .++-.|||-.-+.-. +-..++.++|.+++++..+..- -++-..
T Consensus 278 ~~~-------~gld--~fP~~VT~l~g~ARi-----~eam~~~~~a~~lYk~vlk~~~-~nvEai--------------- 327 (478)
T KOG1129|consen 278 VIG-------EGLD--SFPFDVTYLLGQARI-----HEAMEQQEDALQLYKLVLKLHP-INVEAI--------------- 327 (478)
T ss_pred HHh-------hhhh--cCCchhhhhhhhHHH-----HHHHHhHHHHHHHHHHHHhcCC-ccceee---------------
Confidence 985 2111 122445553222110 3334566777777766554310 011111
Q ss_pred CchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (742)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g 417 (742)
.. +-.+|.-.++.+-|++.+..+..-|+. +...|+.+--+|.-.+++|.++--|.+-...-
T Consensus 328 -----------------Ac-ia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 328 -----------------AC-IAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred -----------------ee-eeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 01 345666778899999999999998865 44567777777778889999988888766553
Q ss_pred CCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 418 INPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 418 ~~Pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-.|+. -.|-.+=......|++..|.+.|+-...+. .-+...||-|--.-.+.|++++|..+++.-...
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 33442 223334444556789999999988777554 234566777666668999999999998876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.098 Score=59.55 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=152.4
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~-~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (742)
+..+..+|.++|+...+. ..-..-++..|.+.+--+-+.=.+ ..|.++.+.+ +-.+.||-++=+.|+
T Consensus 365 El~~Y~~a~~~F~~~r~~----~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS--- 432 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRI----EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS--- 432 (638)
T ss_pred HHHHHHHHHHHHHHHHhh----ccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh---
Confidence 345678999999998442 222234557888877554332111 2233333333 235678888888888
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ 320 (742)
-.++.+.|++.|. .-... +....++|+.+=+- +.....+|.|..-|+. .+..|..
T Consensus 433 -------LQkdh~~Aik~f~-------RAiQl-dp~faYayTLlGhE------~~~~ee~d~a~~~fr~----Al~~~~r 487 (638)
T KOG1126|consen 433 -------LQKDHDTAIKCFK-------RAIQL-DPRFAYAYTLLGHE------SIATEEFDKAMKSFRK----ALGVDPR 487 (638)
T ss_pred -------hhhHHHHHHHHHH-------Hhhcc-CCccchhhhhcCCh------hhhhHHHHhHHHHHHh----hhcCCch
Confidence 7778888888885 21111 11133344433333 7778888888888864 4556788
Q ss_pred ccchhHHhhccc---------cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004610 321 MKLNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (742)
Q Consensus 321 ty~~~~li~~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn 391 (742)
.|+ ..-|+. +.|+.-|... ..+.|...+.=..+-..+-+.|+.|+|+++|++...-. +-|..+--
T Consensus 488 hYn---AwYGlG~vy~Kqek~e~Ae~~fqkA--~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 488 HYN---AWYGLGTVYLKQEKLEFAEFHFQKA--VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred hhH---HHHhhhhheeccchhhHHHHHHHhh--hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 885 223332 1222222222 23445432222224566778899999999999987654 22444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
-.+..+...++.++|+..++++++. +.-+...|-.+-..|-+.|+.+.|..-|--|.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4566777889999999999999875 43345667777778888999999998887776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.27 Score=50.21 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=109.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+-+.|++++|...|++..... |+.... ...+.. +-..|.+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 668899999999999876642 322110 012223 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCChh-hHH----------------
Q 004610 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (742)
Q Consensus 374 lf~~M~~~g~~pd~~--tyn~Li~~~~~~--------g~~~~A~~l~~~M~~~g~~Pd~~-ty~---------------- 426 (742)
.++++.+..-..... ++..+-..+... |+.++|.+.|+.+... .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998653211122 333333344433 6788999999998765 24321 111
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 427 -~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+-..+.+.|+.++|...+++..+.. -......+..+..++.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345778899999999999988652 1223568889999999999999999999998765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.062 Score=57.14 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=88.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----c
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~ 435 (742)
..+...|++++|+++++.- -+.......+..|.+.++++.|.+.++.|.+. ..|..... +..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~q-La~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQ-LAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH-HHHHHHHHHhCc
Confidence 4567789999999888642 35667778899999999999999999999865 34544333 4444443 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.+|+.+|+++.+. ..++..+.|.+..+....|++++|.+++.+-...
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3699999999998765 5688999999999999999999999999886544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.093 Score=43.24 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+...|++++|..+|++..... +.+...+..+...+...|++++|.+.|+...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34444555555555555444331 1122344444444444455555555554443321 112233333444444444444
Q ss_pred HHHHHHHHH
Q 004610 440 KACSVEEHM 448 (742)
Q Consensus 440 ~A~~l~~~M 448 (742)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.2 Score=53.25 Aligned_cols=311 Identities=13% Similarity=0.060 Sum_probs=190.1
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-------H
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-------H 228 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~---Gi~pd~~-------t 228 (742)
.+-..++...++.+|.....-=. ...+. +.....|.+-......|++..|...|+..... -..+|.. -
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~-~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILE-SKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHH-HcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 45555666666666654321000 11112 33378899999999999999999999998744 2344442 3
Q ss_pred HHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccc-cccccCChHHHHHHH
Q 004610 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKL-ESNSSYRFDDLDSTF 307 (742)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~-~~~~~g~~~~A~~lf 307 (742)
||. ..|.. .-++.+.|.++|. +.... |-.-|++..... -.-..+...+|...+
T Consensus 500 YNl--arl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 500 YNL--ARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHH--HHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 332 22221 3457788888885 22221 222233300000 011235667777777
Q ss_pred HHHHHc-CCCCCccccchhHHhhcc--ccccCCCchhhhhcC-CCcCHHhhHHH-----HHHHHH--------hhcCHHH
Q 004610 308 NEKENL-GQFSNGHMKLNSQLLDGR--SNLERGPDDQSRKKD-WSIDNQDADEI-----RLSEDA--------KKYAFQR 370 (742)
Q Consensus 308 ~~M~~~-G~~Pd~~ty~~~~li~~~--~~~a~~~~~~m~~~g-~~pd~~tyn~~-----lI~~~~--------k~g~~~~ 370 (742)
.+.... .--|++.++- |-+--+. ...|..-|.....+- ..+|. |..+ .|..+- ..+..++
T Consensus 554 k~~l~~d~~np~arsl~-G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~--YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLL-GNLHLKKSEWKPAKKKFETILKKTSTKTDA--YSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHhcccCCcHHHHHH-HHHHHhhhhhcccccHHHHHHhhhccCCch--hHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 765543 4667777763 1111111 133444333333321 11343 3321 222211 3346788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (742)
Q Consensus 371 A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (742)
|+++|.+..... +-|...=|.+--.++..|++.+|.++|....+... -+.-+|--+-++|...|++..|.++|+.-.+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887654 55778888888899999999999999999988754 2344566788999999999999999998665
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHHHHHHhhc
Q 004610 451 H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS 504 (742)
Q Consensus 451 ~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (742)
. +-.-+......|-+++-+.|.+.+|.+.+-.-... .|+.. -+++....++.
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 5 44557778889999999999999999988776655 44444 34554444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.32 Score=48.67 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=96.1
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HHcCC--HHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF-CNNGD--VDKA 441 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~-~~~g~--~~~A 441 (742)
.++.+++...++...... +.|...|..|-..|...|+.++|...|++..+.. .-+...+..+-.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445566776676655543 5688899999999999999999999999877653 22455666555553 56677 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-hhHHHHH
Q 004610 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADVI 498 (742)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~-p~t~~~I 498 (742)
.+++++..+.. .-+...+..|-..+.+.|++++|...|+++.+. .+. .+-+.+|
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i 184 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 99999998775 225677788888889999999999999999876 333 2245555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.8 Score=47.81 Aligned_cols=282 Identities=10% Similarity=0.054 Sum_probs=177.8
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (742)
+..|++..|.++|+... ...|+.-.|++.|+.=.+-..++.|..+|++..- +.|++.+|---..-=-
T Consensus 152 E~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~--- 218 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE--- 218 (677)
T ss_pred HHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH---
Confidence 45688999999999863 4678889999999999999999999999999875 4599988877666655
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC--cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCC
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~--~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd 318 (742)
++|.+..|..+|. ..++..|-. +...+++.-.- =..+..++.|.-+|.--... .|.
T Consensus 219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk 276 (677)
T KOG1915|consen 219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK 276 (677)
T ss_pred -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence 8888888888884 222210111 11112221111 11223334444444322221 222
Q ss_pred ccccchhHHhhccc-----------------cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC
Q 004610 319 GHMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (742)
Q Consensus 319 ~~ty~~~~li~~~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (742)
..+- .|..+|. ...+.-+..++.. -..|--+|-- .+..--..|+.+...++|+.....
T Consensus 277 ~rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 277 GRAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred ccHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc
Confidence 2221 2222222 1111223333332 1123334444 455555668899999999987764
Q ss_pred CCCCCH--HHHHHH----HHH----HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----HcCCHHHHHHHHHH
Q 004610 382 EVPMNE--ASLTAV----GRM----AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEH 447 (742)
Q Consensus 382 g~~pd~--~tyn~L----i~~----~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~----~~g~~~~A~~l~~~ 447 (742)
++|-. .-|--. |+- =....+++.+.++++...+. +.-..+||.-+--.|+ ++.++..|.+++..
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45521 111111 111 12467888899999888773 5556788888776666 46788899988887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+ |..|-..+|-.-|..=.+-+++|+...|+.+..+-
T Consensus 430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 65 67788888888888888899999999999888765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.16 Score=48.01 Aligned_cols=91 Identities=10% Similarity=-0.098 Sum_probs=43.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004610 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (742)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (742)
+-..+...|++++|...|....... ..+...|..+-..+.+.|++++|...|+...... ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555544331 1233444444444555555555555555555432 2234444444455555555
Q ss_pred HHHHHHHHHHHHH
Q 004610 473 GDRVYYLLHKLRT 485 (742)
Q Consensus 473 ~~~A~~ll~~M~~ 485 (742)
.++|...|+.-..
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.1 Score=42.93 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004610 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (742)
Q Consensus 389 tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (742)
+|..+...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.++...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2334667778888888999999999999988764 334467888888999
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 004610 469 EAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (742)
..|+.++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.21 Score=45.94 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+...+.+.|+.++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++...+.+ ..+...|..+-..|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3344555566666666666555433 2344555555555656666666666666544432 2233344444445555566
Q ss_pred HHHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLE 450 (742)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (742)
.++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.9 Score=49.38 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 004610 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSV 468 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~--~ty~~Li~~~~ 468 (742)
.+...+...|++++|...+++..+.. ..+...+..+-..|...|++++|...+++.....- .|+. ..|..+-..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445555666666666666655432 12233444455555566666666666665544321 1222 23334555556
Q ss_pred HcCCHHHHHHHHHHHH
Q 004610 469 EAGKGDRVYYLLHKLR 484 (742)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (742)
..|+.++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.061 Score=56.77 Aligned_cols=192 Identities=9% Similarity=-0.008 Sum_probs=127.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhh-ccc---------cccCCCchhhhhcCCCcCHHhhHHHHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLD-GRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDA 363 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~-~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~ 363 (742)
+.+.+++.+|..+..++.- ..|-..... -+.. ++. +.|...|.-.-..+.+-|.+.-.-.+-+.+.
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilK--gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILK--GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHH--HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 7788888888888886521 122222221 1111 111 2333344444444555454444444667777
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHHcCCHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKAC 442 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~~A~ 442 (742)
-..++++++-.++..+..-.--|.+-|| +..+.+..|...+|+++|-.+....+ -|..+|-+++ .+|.+++..+.||
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHH
Confidence 7888999998888888765556666666 78899999999999999977654433 4667776654 5788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHH
Q 004610 443 SVEEHMLEHGVYPEEPELEA-LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (742)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~-Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~ 496 (742)
.++-.|.. ..+..+.-- +-+-|-+++.+--|-+.|+++... .|+|+-|.
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 88766642 223333333 335577889998888999988877 78887554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.32 Score=44.74 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
+......+...+...|+.++|...|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...+..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556677788889999999999999987753 3366777778888889999999999999887764 445677777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 004610 466 VSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.|...|+.++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999988776
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.29 Score=46.20 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=92.2
Q ss_pred CchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (742)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g 417 (742)
+.+...++.+..|...+.. +-..+...|++++|.+.|+...... +.+...|..+-..+.+.|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444444333333444 5567789999999999999988764 4578889999999999999999999999988652
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004610 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (742)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (742)
..+...+..+-.++.+.|+.++|...|+...+. .|+...|..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~ 130 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSE 130 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 346677777888899999999999999998764 466555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.086 Score=58.24 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=93.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 556788999999999998874 443222 5666667778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
++++..... +-|......-.+-|.+.++.+.|+++.+++.+. .|+. .+|..|..+|.+.|+++.|...++.|.
T Consensus 222 ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999887642 446777777778888999999999999998765 4654 599999999999999999999998876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.27 Score=46.36 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGP 427 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--ty~~ 427 (742)
|.. ++..+ ..++...+.+.++.+.... |+. ...-.+-..+...|++++|...|+......-.|... ..-.
T Consensus 15 y~~-~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQ-ALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHH-HHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 444 55555 4888899999999998864 332 222234467788999999999999998876333322 2223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (742)
|-..+...|+.++|...++....... ....+..+=+.|.+.|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55667778999999999977443332 334566677888999999999998865
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.32 Score=56.17 Aligned_cols=224 Identities=9% Similarity=0.000 Sum_probs=153.7
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.+...|-..+|..+|+++ ..|--+|.+|+..|+...|..+..+-.+ -+||+.-|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 455778888999999999 8899999999999999999998887776 5789999999988877
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcC-CCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G-~~P 317 (742)
.---.++|.++++.. +.+. -..++-+ ....++++++.+.|+.-.+.. +.+
T Consensus 469 ---------d~s~yEkawElsn~~------sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSNYI------SARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhhhh------hHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 444578888888621 1110 0001111 334688889988887543321 111
Q ss_pred CccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 004610 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRM 396 (742)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~ 396 (742)
.+|-. +=.+..+.++++.|.+-|..-.. ..| +...||.+-.+
T Consensus 520 ----------------------------------~~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 ----------------------------------GTWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred ----------------------------------hHHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 12222 11233466788888888876554 244 45779999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 004610 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPELEALLRVS 467 (742)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~ 467 (742)
|.+.|+-.+|+..+++-.+.+ .-+...|-.-+....+.|.+++|.+.+.+|.+... ..|......++...
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 999999999999999887776 44555666667777888999999998888765321 12444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.3 Score=50.52 Aligned_cols=283 Identities=10% Similarity=0.011 Sum_probs=152.4
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~ 240 (742)
..|+..+|.+++.+.+.+.. -+...|-+|=..|-..|+...++..+-.. ..+.| |..-|-.+-....
T Consensus 151 arg~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~--- 218 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSE--- 218 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHH---
Confidence 34999999999999965432 23378999999999999999998776433 33444 4455555555555
Q ss_pred cCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc---ccccccccccccccccccccCChHHHHHHHHHHHHcCCCC
Q 004610 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN---NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 241 ~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~---~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P 317 (742)
+.|++.+|.-.|. +.... .-.+ ..-+..| |-+.|+...|..-|.+|...-- |
T Consensus 219 -------~~~~i~qA~~cy~-------rAI~~-~p~n~~~~~ers~L---------~~~~G~~~~Am~~f~~l~~~~p-~ 273 (895)
T KOG2076|consen 219 -------QLGNINQARYCYS-------RAIQA-NPSNWELIYERSSL---------YQKTGDLKRAMETFLQLLQLDP-P 273 (895)
T ss_pred -------hcccHHHHHHHHH-------HHHhc-CCcchHHHHHHHHH---------HHHhChHHHHHHHHHHHHhhCC-c
Confidence 6677777777764 11111 0000 0001111 5566777777777777665421 1
Q ss_pred Cccccc---hhHHhhccc-----cccCCCchhhhh-cCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHH----------
Q 004610 318 NGHMKL---NSQLLDGRS-----NLERGPDDQSRK-KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM---------- 378 (742)
Q Consensus 318 d~~ty~---~~~li~~~~-----~~a~~~~~~m~~-~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M---------- 378 (742)
..+-.. ...+++.+- ..|...+..-.. .+-.-+...+|. ++..|.+..+.+.|.....++
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni-~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNI-LAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHH-HHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 111110 000000000 000000110000 000111112222 333444444444444433333
Q ss_pred ---------------------------------------------------HhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 004610 379 ---------------------------------------------------CLDE--VPMNEASLTAVGRMAMSMGDGDM 405 (742)
Q Consensus 379 ---------------------------------------------------~~~g--~~pd~~tyn~Li~~~~~~g~~~~ 405 (742)
.... +.-++..|.-+.+++...|++.+
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 3333 22233456666667777888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 406 A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
|+.+|..+...-..-+...|-.+=.+|-..|..+.|.+.|+..+.. .|+ ...--+|-..+-+.|+.++|.+.+..|.
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888887776644445667777777777778888888888777643 233 2222334444567788888888887775
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.48 Score=48.61 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=87.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (742)
..+.|..+++-|...+++|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|-++ ..|+.-+-+-...++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 33456678889999999998743 67888877776665 55688999999999765 778888888888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 004610 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (742)
|++++|..++++...+.- -+..|..-+|-.--..|.. +-..+.+..++..
T Consensus 221 ~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999999987752 3445554455444445544 3344555666544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.49 Score=50.16 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=116.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-
Q 004610 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD- 276 (742)
Q Consensus 198 I~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~- 276 (742)
|--|-+.+++.+|..+..++. -..| |.-++.+...+..|. +-.....++-|...|. |...++..
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~--PttP----~EyilKgvv~aalGQ-e~gSreHlKiAqqffq--------lVG~Sa~ec 356 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLD--PTTP----YEYILKGVVFAALGQ-ETGSREHLKIAQQFFQ--------LVGESALEC 356 (557)
T ss_pred eeeecccccHHHHHHHHhhcC--CCCh----HHHHHHHHHHHHhhh-hcCcHHHHHHHHHHHH--------Hhccccccc
Confidence 335778899999999877653 1223 333444444222110 0002223455666663 44443443
Q ss_pred cccc-cccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhH
Q 004610 277 NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (742)
Q Consensus 277 ~~vt-yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn 355 (742)
|.+. =-++-.+ +--..++|+.+-.++..+.-=.--|.+.||
T Consensus 357 DTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-------------------------------- 398 (557)
T KOG3785|consen 357 DTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-------------------------------- 398 (557)
T ss_pred ccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhhH--------------------------------
Confidence 4433 1222222 333344555555554444332222333332
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-HHH
Q 004610 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA-VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFC 433 (742)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~-Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-~~~ 433 (742)
+-.+++..|...+|.++|-......+ -|..+|.+ |.++|.+++.++.|++++-.|. -..+..+.--+|. -|-
T Consensus 399 --~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 399 --LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCY 472 (557)
T ss_pred --HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHH
Confidence 67899999999999999976654433 35566655 5568889999999999886653 2234444444444 567
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPEL 460 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (742)
+++++--|-+.|++++.. .|+..-|
T Consensus 473 k~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 889988888888888765 3555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.89 Score=56.07 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~ 219 (742)
..|-.-|.-....++.+.|.+++++...
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~ 1486 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALK 1486 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 6777788888899999999999998873
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.4 Score=54.42 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=110.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCN 434 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~ 434 (742)
|..-|.+.+..++|.++|+.|.++- .-....|...+..+.+..+.++|..++++-.+. .|. +..-.-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999998752 245678999999999999999999999886543 354 2333334445567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHH-HHHHHHhhc
Q 004610 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNS 504 (742)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~-~~I~~~~~~ 504 (742)
.|+.+.++.+|+.....- .--...|+..|+.=.++|+.+.+..+|++.... .+++--. -....|...
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l--~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL--KLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCChhHhHHHHHHHHHH
Confidence 899999999999988653 223568999999999999999999999999998 6776622 225555543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.9 Score=43.97 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCChhhH
Q 004610 366 YAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSY 425 (742)
Q Consensus 366 g~~~~A~~lf~~M~~~g~~pd~-~ty-----------------n~Li~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty 425 (742)
|+.++|.+.|+.+.... |+. ..+ -.+...+.+.|+.++|...+++..... -......+
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 55667777777665542 221 111 134567888999999999999987652 11235678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
..+..++.+.|+.++|...++.+...
T Consensus 207 ~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 207 ARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.14 Score=47.32 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
|+.++.++|-++++.|+++....+++..- |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45667777777777777776666665432 22221100 0000 0112235677777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcc-CCCChhHHHHHHHHhh
Q 004610 466 VSVEAGKGDRVYYLLHKLRTSV-RKVSPSTADVIAKWFN 503 (742)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~~-~~~~p~t~~~I~~~~~ 503 (742)
+|+..|++..|+++++...+.- +.++..+|..+..|+-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777776666542 1223336666555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.65 Score=49.57 Aligned_cols=123 Identities=12% Similarity=0.021 Sum_probs=94.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (742)
+=..|.+.|+.++|...|++..+.. +.+...|+.+-..+...|++++|...|+...+. .|+ ..+|..+-..+...|
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 4456788899999999999887754 346789999999999999999999999988754 454 566677777788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
+.++|.+.|+...+. .|+..........+...++.++|...|.+...
T Consensus 147 ~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 147 RYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999998865 45543222223334456789999999976543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.64 Score=48.29 Aligned_cols=179 Identities=12% Similarity=0.062 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHH
Q 004610 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (742)
Q Consensus 248 k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~l 327 (742)
+.|+.++|.+-|. +..+-+|..+.+.||..+.. | +.|+.+.|+++..++.++|++-.. -++.|..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH------y-~~~qyasALk~iSEIieRG~r~HP-ElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH------Y-SSRQYASALKHISEIIERGIRQHP-ELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH------H-hhhhHHHHHHHHHHHHHhhhhcCC-ccCccce
Confidence 8999999999995 55554577788888887654 3 678999999999999999965221 1111111
Q ss_pred hhccccccCCCc--hhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHH
Q 004610 328 LDGRSNLERGPD--DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGD 404 (742)
Q Consensus 328 i~~~~~~a~~~~--~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~Li~~~~~~g~~~ 404 (742)
.+|-- ++.+- -.|...|+ +..+|- =-..+.+.++.+.|.+-+-+|.-+ .-..|.+|...+.-.-. .+++.
T Consensus 221 tegiD--vrsvgNt~~lh~Sal---~eAfNL-KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~ 293 (459)
T KOG4340|consen 221 TEGID--VRSVGNTLVLHQSAL---VEAFNL-KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPT 293 (459)
T ss_pred eccCc--hhcccchHHHHHHHH---HHHhhh-hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcc
Confidence 11110 00000 00000000 001111 113355778888898888888643 34567777765543322 34444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 405 ~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (742)
+..+-+.-+....- --..||..++--||++.-++.|-.++.+-.
T Consensus 294 ~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 44444444443322 235788889999999999999998887643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.34 E-value=5.6 Score=45.77 Aligned_cols=300 Identities=11% Similarity=0.004 Sum_probs=177.1
Q ss_pred HHHHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004610 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (742)
Q Consensus 157 ~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~ 236 (742)
++.+.+.+...+|++-+..-+.+ +.-....--+--+.+.+.+++++|..+|..+... .||.+-|.-.+..+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 44566777777777766654221 1111122233446678899999999999999875 48888888877766
Q ss_pred HccccCCcccCCCCCHHHHH-HHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCC
Q 004610 237 SSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (742)
Q Consensus 237 ~~~~~~~~~~~k~G~~~~A~-~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~ 315 (742)
.. +.-..-++. .+|...+ +..... .+.--..-+. +-.....+....++..+.+.|+
T Consensus 263 lg---------k~~d~~~~lk~ly~~ls---~~y~r~-e~p~Rlplsv----------l~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 263 LG---------KIKDMLEALKALYAILS---EKYPRH-ECPRRLPLSV----------LNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HH---------HHhhhHHHHHHHHHHHh---hcCccc-ccchhccHHH----------hCcchhHHHHHHHHHHHhhcCC
Confidence 61 111222333 4443111 111111 1110000111 1112233555677778888885
Q ss_pred CC---Cccccc--------hhHHhhccc--cccCCCchhhhhcCC-CcCHHhhHH-HHHHHHHhhcCHHHHHHHHHHHHh
Q 004610 316 FS---NGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDW-SIDNQDADE-IRLSEDAKKYAFQRGFEIYEKMCL 380 (742)
Q Consensus 316 ~P---d~~ty~--------~~~li~~~~--~~a~~~~~~m~~~g~-~pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~M~~ 380 (742)
.| |..+.. ...++..|. ......|...-...+ .|....|+. .++..|-+.|+++.|.+.++.-..
T Consensus 320 p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 320 PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 54 444444 011111121 011111211111112 455555554 366888899999999999998776
Q ss_pred CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004610 381 DEVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (742)
Q Consensus 381 ~g~~pd~-~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (742)
. .|+. .-|-+=.+.+...|++++|..++++-.+.. .||...=+-.-....+++++++|.++.....+.|. +...
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~ 474 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVN 474 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhh
Confidence 4 4544 345555688999999999999999987764 37776666777778889999999999999888875 4333
Q ss_pred HHHHH----------HHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 460 LEALL----------RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 460 y~~Li----------~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
+-+-+ .+|.+.|++.+|++=|+.+...-...+.+
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~d 518 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSED 518 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 32222 34677788888888777776553333433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.24 E-value=3.5 Score=45.60 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=106.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+-+.|+-.++-++|...|+.-.+-+ +-....|+.|=.-|....+...|.+-++.-.+- .+-|-+.|-.|=++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 5577888899999999999887754 234578888889999999999999999987766 45688899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..-|.-.|++...-. .-|...|.+|=++|.+-++.++|.+.|..-..-
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999877542 347899999999999999999999999888665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.4 Score=44.53 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=101.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (742)
|--+|...|+...|..-+++..+.. +-+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+ ..+-|-.=.-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4468889999999999999888764 335678899999999999999999999876543 333 233333444568889
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHHHHHHhhchH
Q 004610 437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~~~ 506 (742)
..++|...|++....--.|. ..||.-+--+..+.|+.+.|.+.|++-.+......+.....-...++.+.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 99999999988876533222 35666666666788999999999988776633333333333444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.52 Score=41.88 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALL 464 (742)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li 464 (742)
-.+...+.+.|+.++|.+.|..+.... |+ ...+..+-..+.+.|+.+.|...|+...... -......+..+-
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 334444455555555555555554321 11 1233334445555555555555555554331 011123344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 004610 465 RVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 4555556666666666555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.2 Score=52.62 Aligned_cols=154 Identities=8% Similarity=-0.043 Sum_probs=116.7
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
|-+-|...+|.+.|..-.+.---||++.| |-..|.+-.+.+.|+.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dTfll-----------------------------------LskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDTFLL-----------------------------------LSKVYQRIDQPERALL 277 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhHHHH-----------------------------------HHHHHHHhccHHHHHH
Confidence 88889999999999877665444443333 6688999999999999
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 374 IYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 374 lf~~M~~~g~~pd~~ty-n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
+|.+-.+. -|-.+|| .-+.+.+-..++.++|.+++++..+. -.-++....++-.+|.-.++.|.|+..|.++...|
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 99887654 3555554 56777888899999999999998765 23466666666777888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+. +...|+-+--+|.-.+++|-++--|.+-...
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 76 4455555555666778888888777766544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.10 E-value=4.1 Score=45.37 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=90.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----C--CCChhhHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----I--NPRLRSYGPALSVF 432 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-----~--~Pd~~ty~~lI~~~ 432 (742)
.+.-|.+++++++..|++-+++ ++--...||-....+...++++.|.+.|+...+.. + .+-..+--.+|..-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 3444677999999999998876 44456789999999999999999999998765431 1 11111112222222
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-.+++..|..++....+.. .-....|.+|-..-.+.|+.++|.++|++-..-
T Consensus 515 -wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2489999999999887553 224577899999999999999999999987554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.77 Score=40.74 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=73.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFC 433 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty~~lI~~~~ 433 (742)
+...+.+.|++++|.+.|.++....- ......+..+...+.+.|++++|.+.|+.+.... -......+..+-.++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 55677889999999999999986531 1123466778999999999999999999987642 1112345666777788
Q ss_pred HcCCHHHHHHHHHHHHHCC
Q 004610 434 NNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~g 452 (742)
+.|+.++|...++++.+..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HhCChHHHHHHHHHHHHHC
Confidence 8999999999999998774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.8 Score=49.87 Aligned_cols=218 Identities=14% Similarity=0.063 Sum_probs=128.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccc
Q 004610 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (742)
Q Consensus 188 ~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s 266 (742)
+.+...|-.||..+-..+++++|.++.++-.+. .-.+...-|..+|..-. +...++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~------------~~~~~~~lv-------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR------------RPLNDSNLL-------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh------------cchhhhhhh--------
Confidence 446678999999999999999999999966543 22344444444422222 222222221
Q ss_pred hhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcC
Q 004610 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (742)
Q Consensus 267 ~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g 346 (742)
.++.. +....++.....+...|...+-
T Consensus 88 ----------------~~l~~------~~~~~~~~~ve~~~~~i~~~~~------------------------------- 114 (906)
T PRK14720 88 ----------------NLIDS------FSQNLKWAIVEHICDKILLYGE------------------------------- 114 (906)
T ss_pred ----------------hhhhh------cccccchhHHHHHHHHHHhhhh-------------------------------
Confidence 11111 3333344333444444433221
Q ss_pred CCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004610 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
+...+-+ +-.+|-+.|+.++|.++++++.+-. +-|..+.|-+...|+.. ++++|.+++..-...-+ +..-|+
T Consensus 115 ---~k~Al~~-LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~ 186 (906)
T PRK14720 115 ---NKLALRT-LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYV 186 (906)
T ss_pred ---hhHHHHH-HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcch
Confidence 1111223 6678888899999999999988876 55788888888888888 99999988887654411 122222
Q ss_pred HHHH---HHHHc--CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 427 PALS---VFCNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 427 ~lI~---~~~~~--g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+.. -+|.. -+++.=..+.+.+... |..--..++-.|-..|-...+++++..+|+.+.+.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 2222 12221 2233333333333322 33344556666667788888899999999888776
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.1 Score=45.96 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=96.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
.+....+.|++.+|...|.+...- -++|..+||.+=-+|.+.|+.++|..-|.+-.+-- .-+...+|-|--.|.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC
Confidence 567777899999999999998764 37899999999999999999999999888776542 1234455666666778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
.+.|..++.+-...+.. |...-.-|--.....|++++|..+-..-
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999998877633 4555566677778899999998885543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.75 E-value=4 Score=46.83 Aligned_cols=301 Identities=11% Similarity=0.035 Sum_probs=162.9
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcccc
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (742)
..++.++...++.+..+.-.-+...-.|. ..|-.+-+.|-..|+++.|..+|+...+-..+ .+.....+=-.|+....
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHH
Confidence 44667777888888765432222222344 67888899999999999999999998765433 22222222223332221
Q ss_pred CCcccCCCCCHHHHHHHhhhhcccchhhcccC------CCCcc--c------ccccccccccccccccccCChHHHHHHH
Q 004610 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDNN--G------QLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (742)
Q Consensus 242 ~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~------g~~~~--v------tyn~lI~~~~~~~~~~~~g~~~~A~~lf 307 (742)
+..+++.|..+...- ..+.... |-.++ . .|.-.++. --..|-++....++
T Consensus 437 ------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vY 500 (835)
T KOG2047|consen 437 ------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVY 500 (835)
T ss_pred ------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHH
Confidence 445566777665311 0111110 00111 1 12222332 33446777777888
Q ss_pred HHHHHcCCCCCccccchhHHhh--ccccccCCCchhhhhcCCCcCH-HhhHHHHHHHHHhhc--CHHHHHHHHHHHHhCC
Q 004610 308 NEKENLGQFSNGHMKLNSQLLD--GRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKY--AFQRGFEIYEKMCLDE 382 (742)
Q Consensus 308 ~~M~~~G~~Pd~~ty~~~~li~--~~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~g 382 (742)
+.+....+....+..|...+++ .|..++.++++.-+.-=--|++ -.||+.|...-.+.| .+++|..+|++..+ |
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 8887776554443333222221 2223333322222221112444 246665544444444 78999999999887 8
Q ss_pred CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004610 383 VPMNEASLTAVGRM--AMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (742)
Q Consensus 383 ~~pd~~tyn~Li~~--~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (742)
|+|.-.-+--|+-+ =-+.|....|+.++++.. .++.+. ...||+.|.--...=-+-...++|++.++. -||..
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~ 656 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSK 656 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHH
Confidence 88755433222221 124677788888888843 335443 467787776555443344556666666654 45555
Q ss_pred HHHHHHHH---HHHcCCHHHHHHHHHHHH
Q 004610 459 ELEALLRV---SVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 459 ty~~Li~~---~~~~g~~~~A~~ll~~M~ 484 (742)
.-..-|+. =++-|.+++|..++..-.
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 43333332 266777787777775543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.94 Score=46.56 Aligned_cols=198 Identities=10% Similarity=0.094 Sum_probs=111.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccch
Q 004610 189 SEQFQLRVELDMCSKRGDVMGA-IRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (742)
Q Consensus 189 P~~~tyn~lI~~~~~~g~~~~A-~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~ 267 (742)
|.......+-.....-++-+.- -++.+++......-+...-..-.-.|+ +.|+.++|.+.....
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~----------~~~~~deAl~~~~~~----- 134 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYM----------HDGDFDEALKALHLG----- 134 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhh----------cCCChHHHHHHHhcc-----
Confidence 3334444333333334443332 334555554444444333333333455 778888888887511
Q ss_pred hhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCC
Q 004610 268 ELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (742)
Q Consensus 268 em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~ 347 (742)
. ++ ....-|.- . +.+..+++-|.+.++.|.+.. +..|.+ .|-.
T Consensus 135 ---~--~l-E~~Al~Vq--I------~lk~~r~d~A~~~lk~mq~id---ed~tLt--QLA~------------------ 177 (299)
T KOG3081|consen 135 ---E--NL-EAAALNVQ--I------LLKMHRFDLAEKELKKMQQID---EDATLT--QLAQ------------------ 177 (299)
T ss_pred ---c--hH-HHHHHHHH--H------HHHHHHHHHHHHHHHHHHccc---hHHHHH--HHHH------------------
Confidence 0 11 11111111 1 445667788888888887642 222332 2222
Q ss_pred CcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
..|+...-.+.+.+|+-+|++|.++ ..|+..+.|.+..++...|++++|..++++...+.- -+..|..-
T Consensus 178 ---------awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~N 246 (299)
T KOG3081|consen 178 ---------AWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLAN 246 (299)
T ss_pred ---------HHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHH
Confidence 2444455566899999999999764 579999999999999999999999999999876632 23333333
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHH
Q 004610 428 ALSVFCNNGDV-DKACSVEEHML 449 (742)
Q Consensus 428 lI~~~~~~g~~-~~A~~l~~~M~ 449 (742)
+|-.--..|.- +--.+....+.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHH
Confidence 44433333432 33333444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.34 Score=44.69 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcC
Q 004610 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAG 471 (742)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g 471 (742)
.+.|+..+-.+++.+|+..|++..|.++.+...+. ++..+..+|..|+.-....-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999998754 88888999999998765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=1 Score=44.97 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=85.2
Q ss_pred CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCCChhhHH
Q 004610 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~-~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
|...|.. |-..|...|++++|.+.|++..... +-|...+..+-.++ ...|+ .++|.+++++..+..- -+...+.
T Consensus 72 ~~~~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~ 148 (198)
T PRK10370 72 NSEQWAL-LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALM 148 (198)
T ss_pred CHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHH
Confidence 3334445 7778889999999999999888764 34677888888764 67777 5999999999887642 3567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004610 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (742)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (742)
.+-..+.+.|++++|...|+.+.+.. .|+..-+. +|++
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 78888999999999999999998764 45554443 3344
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.38 Score=49.57 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g----------------~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
.++--...++.|++.|+.-|+.+|+.||+.+=+.. +-+=|..++++|+.+|+.||..+-..||+
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444444556666666666666666666554432 12346789999999999999999999999
Q ss_pred HHHHcCCH-HHHHHHHHHHHH
Q 004610 466 VSVEAGKG-DRVYYLLHKLRT 485 (742)
Q Consensus 466 ~~~~~g~~-~~A~~ll~~M~~ 485 (742)
++.+.|.. .+..+++--|.+
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhccccccHHHHHHHHHhhhh
Confidence 99988864 355555555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.77 Score=52.78 Aligned_cols=76 Identities=11% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
+-....++.+|+.+++.+...... ..-|.-+.+-|+..|+++.|.++|-+ .+ .++-.|.+|.++|.++.
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---~~------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---AD------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---cc------hhHHHHHHHhccccHHH
Confidence 334445555566666555543221 22345555566666666666666643 12 13455666666666666
Q ss_pred HHHHHHH
Q 004610 441 ACSVEEH 447 (742)
Q Consensus 441 A~~l~~~ 447 (742)
|+++-++
T Consensus 810 a~kla~e 816 (1636)
T KOG3616|consen 810 AFKLAEE 816 (1636)
T ss_pred HHHHHHH
Confidence 6665433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.5 Score=50.13 Aligned_cols=273 Identities=9% Similarity=-0.014 Sum_probs=157.3
Q ss_pred HhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CC--HHHHHHHHHH
Q 004610 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IK-LG--QYHYNVLLYL 235 (742)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~G--i~-pd--~~tyn~LL~~ 235 (742)
...++.++|...+++..+.- +......-...++.+-..+...|++++|...+.+..... .. +. ..+++.+-..
T Consensus 463 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL--PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 35678888888888764421 111000012345666667788999999999999887321 11 11 2233334444
Q ss_pred HHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc----ccccccccccccccccccccCChHHHHHHHHHHH
Q 004610 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (742)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~----~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~ 311 (742)
+. ..|++++|...+... .+..+..+..+ ...+..+-.. +...|++++|...+.+..
T Consensus 541 ~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 541 LF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKGL 600 (903)
T ss_pred HH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHhH
Confidence 55 678999998887411 11111112111 1112222222 455699999999888765
Q ss_pred HcCC--CCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC----CCCC
Q 004610 312 NLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM 385 (742)
Q Consensus 312 ~~G~--~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g~~p 385 (742)
...- .+.. ....+.. +-..+...|+.++|.+.+++.... +...
T Consensus 601 ~~~~~~~~~~------------------------------~~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 601 EVLSNYQPQQ------------------------------QLQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HhhhccCchH------------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 4311 0110 0111222 445667889999999998877432 1111
Q ss_pred CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC
Q 004610 386 NEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE 456 (742)
Q Consensus 386 d~~ty--n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd 456 (742)
..... ...+..+...|+.+.|...+............ ..+..+-.++...|+.++|..++++.... |..++
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11010 11234455689999999998775432111111 11334556678889999999999887653 43332
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 457 -EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 457 -~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..++..+-.++.+.|+.++|...+.+..+.
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234556666778999999999999888765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.4 Score=50.89 Aligned_cols=216 Identities=10% Similarity=0.094 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccc
Q 004610 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (742)
Q Consensus 205 g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~l 284 (742)
+.+++|.++-++.. .+..|+.|-.+=. ..|.+.+|++-|- ...|...|--+
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence 55666665544432 3456777777666 6778888888772 12255568778
Q ss_pred cccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHh
Q 004610 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (742)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (742)
|.. ..+.|.+++-.+.+...++..-.|.+-+- ||-||.+..+ +.++..-=.-||+.-... +=+-|..
T Consensus 1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e----Li~AyAkt~r--l~elE~fi~gpN~A~i~~-vGdrcf~ 1206 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE----LIFAYAKTNR--LTELEEFIAGPNVANIQQ-VGDRCFE 1206 (1666)
T ss_pred HHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH----HHHHHHHhch--HHHHHHHhcCCCchhHHH-HhHHHhh
Confidence 888 88899999998888777776666665442 2333321111 011111111122211111 1222333
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l 444 (742)
.+.++.|.-+|. ++.-|.-|...+...|++..|.+--+. .-+..||--+-.+|...+.+.-|
T Consensus 1207 ~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHH---
Confidence 333333333332 223345555555555555555443322 13556666666666665555433
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (742)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (742)
.|-...+........-||.-|-..|.+++...+++.
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 344444556667778888888888888888777653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=5 Score=46.35 Aligned_cols=146 Identities=8% Similarity=-0.043 Sum_probs=97.1
Q ss_pred cCCCcCHHhhHHHHHHHHHhh-----cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--------CHHHHHHHH
Q 004610 345 KDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMV 410 (742)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~g~~pd-~~tyn~Li~~~~~~g--------~~~~A~~l~ 410 (742)
.+...|...|.. .+.+.... +..+.|.++|++..+. .|| ...|..+..++.... ++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 445567777777 55554332 2477999999998875 465 344554444333221 122333333
Q ss_pred HHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 004610 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (742)
Q Consensus 411 ~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~ 489 (742)
...... ....+...|.++-......|+.++|...+++..+.. |+...|..+-..+...|+.++|.+.+.+-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 332222 233345777777555556799999999999999876 78889999999999999999999999887655 5
Q ss_pred CChhHHHH
Q 004610 490 VSPSTADV 497 (742)
Q Consensus 490 ~~p~t~~~ 497 (742)
+...||-.
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 55556644
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=13 Score=46.22 Aligned_cols=276 Identities=13% Similarity=0.020 Sum_probs=151.1
Q ss_pred hhcCcchHHHHHHHHHhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 004610 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (742)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~--tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~~ 235 (742)
..++.++|...++...+.-...+.+..|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4456777777777654321111111112211 1112223456789999999999987753111121 223333333
Q ss_pred HHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc--ccccccccccccccccccccCChHHHHHHHHHHHHc
Q 004610 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (742)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~--~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~ 313 (742)
+. ..|+.++|...+... .+.....|-.. ..+++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 44 678999998888411 01111111111 1122223233 66789999999988876542
Q ss_pred CC---CCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhC--CCCC--C
Q 004610 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (742)
Q Consensus 314 G~---~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~p--d 386 (742)
.- .++... ....+.. +-..+...|++++|.+.+.+.... ...+ .
T Consensus 561 ~~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLPM----------------------------HEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhccccccH----------------------------HHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 000000 1111222 334556679999999998876442 1112 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCChhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---
Q 004610 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRLRSY--GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--- 457 (742)
Q Consensus 387 ~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~Pd~~ty--~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--- 457 (742)
...+..+...+...|+.++|.+.+.+.... +..+..... ...+..+...|+.+.|.+++............
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555667788999999999999887542 111111010 11224455689999999998775542211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+..+-.++...|+.++|..++.+....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11345666778899999999999887653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=93.99 E-value=2.6 Score=44.62 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=69.9
Q ss_pred HHHhh-cCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCChh-hHHHH
Q 004610 361 EDAKK-YAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-----NPRLR-SYGPA 428 (742)
Q Consensus 361 ~~~k~-g~~~~A~~lf~~M~~----~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~-----~Pd~~-ty~~l 428 (742)
.|-.. |+++.|++.|++-.. .|-.- -..++..+...+.+.|++++|.++|++....-+ ++++. .|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 677777777765432 23111 124566777888899999999999998876533 22332 22334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 004610 429 LSVFCNNGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVSVEAG---KGDRVYYLLHKL 483 (742)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~--gv~pd--~~ty~~Li~~~~~~g---~~~~A~~ll~~M 483 (742)
+-++...||...|...+++.... ++..+ -.....||.++ +.| .+.+|..-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHccc
Confidence 44566678999999999988754 33222 33455666665 334 345555555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.11 Score=44.03 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHH
Q 004610 366 YAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (742)
Q Consensus 366 g~~~~A~~lf~~M~~~g~-~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~ 443 (742)
|+++.|+.+|+++.+..- .|+...+-.+..++.+.|+.++|..+++. . ...|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 456666666666655432 11233333356666666666666666655 1 111222 111222344555666666666
Q ss_pred HHHH
Q 004610 444 VEEH 447 (742)
Q Consensus 444 l~~~ 447 (742)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.66 Score=53.31 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=68.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
-|..|.++|+++.|.++-.+. .|-......|-+-..-+-+.|++.+|.+++-.+ | .|+ ..|.+|-+.|.
T Consensus 797 ai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~ 865 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGL 865 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCc
Confidence 566777777777777665443 333344455555555666677777777666432 1 243 46777777777
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
.+...++.+.-. |+ ..|--.+-.-|-..|++..|.+-|-+-.+
T Consensus 866 ~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 866 DDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred chHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 777666665432 22 23444555667778888888887766543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.2 Score=41.41 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=41.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCN 434 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~ 434 (742)
+-..|...|++++|.+.|++.....-.++ ...|..+...+.+.|+.++|...+.+.... .| +...+..+-..+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 44445556666666666666654322221 245566666666666666666666655543 22 23333334444444
Q ss_pred cCCH
Q 004610 435 NGDV 438 (742)
Q Consensus 435 ~g~~ 438 (742)
.|+.
T Consensus 119 ~g~~ 122 (172)
T PRK02603 119 RGEK 122 (172)
T ss_pred cCCh
Confidence 4443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.9 Score=48.36 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCChhhH-HHHH
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPAL 429 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~ty-~~lI 429 (742)
+|-. .|+.--|..-++.|..+|.+.++.+..+ ++..++++|.-+|. ++.+-|+++|+- |+..| |.-.| ..-+
T Consensus 368 v~~~-~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~---d~p~yv~~Yl 442 (656)
T KOG1914|consen 368 VYCQ-YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG---DSPEYVLKYL 442 (656)
T ss_pred ehhH-HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC---CChHHHHHHH
Confidence 3444 6677777778888899999998888777 88888888888875 566778888875 33333 33333 4467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+-+..-++-..|..+|++.+..++.|| ...|..+|+-=+.-|++..+.++-+++...
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 777788888888999999888866665 467899998888889998888888777654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=2.4 Score=50.60 Aligned_cols=123 Identities=10% Similarity=-0.041 Sum_probs=75.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI~~~~~~ 435 (742)
|-......|..++|.++++...+. .| +......+...+.+.+++++|+...++.... .|+..+. ..+=.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 445555667777777777766653 33 3455566666777777777777777665544 2443333 3333445556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 436 GDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
|+.++|.++|++.... .|+ ..++..+=.++-..|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777662 233 556666666666777777777777666543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.3 Score=48.66 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=75.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+...|++++|+++|++..... +-+...|..+..+|.+.|++++|+..+++..... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34557789999999998887754 3466778888888889999999999988876652 224566777777888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 004610 440 KACSVEEHMLEHGVYPEEPELEALL 464 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li 464 (742)
+|...|++.++. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999888764 46655555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=3.4 Score=40.06 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEA 462 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~ 462 (742)
....|..+-..+...|++++|...|++..+..-.|. ...|..+-..+.+.|+.++|...+++.... .| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345677888888899999999999999876543332 357777888899999999999999998874 34 3455566
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHHccCCCChhHHHHHHHHh
Q 004610 463 LLRVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (742)
Q Consensus 463 Li~~~~~~g~--------------~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~ 502 (742)
+-..|...|+ +++|.+++.+... ..|+.+..+..|.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~ 161 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWL 161 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHH
Confidence 6666777666 3455555555443 3455444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.18 Score=42.58 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 004610 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (742)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (742)
.|+++.|+.+++++.+..- .|+...+-.+-.+|.+.|+.++|..+++. .. ..|.. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987643 22444444478899999999999999988 32 22333 33334567788999999999
Q ss_pred HHHHH
Q 004610 478 YLLHK 482 (742)
Q Consensus 478 ~ll~~ 482 (742)
++|.+
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=3.3 Score=49.51 Aligned_cols=132 Identities=13% Similarity=0.058 Sum_probs=98.7
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
..+.|+.++|..+++...+. .||-.. .-..+...+.+.+++++|..
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~--------------------------------a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSE--------------------------------AFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHH--------------------------------HHHHHHHHHHHhccHHHHHH
Confidence 55778999999999877663 344333 33447788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004610 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (742)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (742)
..++..... +-+....+.+-.++.+.|+.++|..+|++....+ |+ ..++..+=.++-+.|+.++|...|+...+.-
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999988764 3355667778888889999999999999988732 44 6677777778888999999999999887642
Q ss_pred CCCCHHHHHHH
Q 004610 453 VYPEEPELEAL 463 (742)
Q Consensus 453 v~pd~~ty~~L 463 (742)
.|...-|+-+
T Consensus 219 -~~~~~~~~~~ 228 (694)
T PRK15179 219 -GDGARKLTRR 228 (694)
T ss_pred -CcchHHHHHH
Confidence 2333444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.31 Score=39.02 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=7.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 004610 392 AVGRMAMSMGDGDMAFDMVKR 412 (742)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~ 412 (742)
.+..+|.+.|++++|..+++.
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333333333333
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.4 Score=46.59 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=107.6
Q ss_pred HhhHHHHHHHHHhhcCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH-HHHH
Q 004610 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPAL 429 (742)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI 429 (742)
.+|.. .|+.-.+..-++.|..+|-+.++.| +.+++..|+++|.-+|. |+..-|..+|+-=... -||.-.| +-.+
T Consensus 398 ~v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hHHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34445 6777778888999999999999998 67999999999998875 6777899999752222 2555444 3466
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhHHHH
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (742)
.-+.+-++-+.|..+|+.-+.+ +.-+ ...|..+|+-=..-|++..|..+=++|... .+..++..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 7788889999999999954432 1222 568999999999999999999999999888 777776665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.85 E-value=2.5 Score=48.32 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP--------- 458 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~--------- 458 (742)
.+.-.+..-+-+...+..|-++|..|-.. -.+++.....+++.+|+.+-+...+- .||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444455566677788888877543 35677777888888888887765532 33332
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 459 --ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 459 --ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
-|.---.+|-++|+..||..+++.+..+
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456778888888888888888766
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.33 Score=38.83 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=51.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
.+.|++++|.++|+.+.... .-+...+-.+..+|.+.|++++|..+++.+... .|+...|..|+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHHh
Confidence 57899999999999987662 226666777999999999999999999999876 477677766653
|
... |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.4 Score=46.03 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=90.7
Q ss_pred HHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHH
Q 004610 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~ 440 (742)
+-..|++++|+..++.+... .+-|..-+....+.+.+.++.++|.+.++.+... .|+. ...-.+=.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34678888999999887765 2345566666777888899999999999888755 4553 233335567888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
|..++++-.... .-|...|..|-++|...|+..+|..-..++-..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 998888877553 557888999999999999988888777666443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.70 E-value=5.6 Score=41.63 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=150.8
Q ss_pred HHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHc
Q 004610 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSS 238 (742)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~~~~~ 238 (742)
+.+..+..+|.+++..-.++.. + +....+.|=.+|-+..++..|-..|+.+-.. .|-..-|..-- ..+-
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY- 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY- 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH-
Confidence 3356677888888877644322 1 3366777778888889999999999888643 34433332110 0111
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC-cccccccccccccccccccccCChHHHHHHHHHHHHcCCCC
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~-~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~P 317 (742)
+++...+|+.+.. .|.+...+. .++-.-+.|.. +.+++-.+..+.++....|
T Consensus 90 ---------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAIkY--------se~Dl~g~rsLveQlp~en--- 142 (459)
T KOG4340|consen 90 ---------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAIKY--------SEGDLPGSRSLVEQLPSEN--- 142 (459)
T ss_pred ---------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHHhc--------ccccCcchHHHHHhccCCC---
Confidence 4555777777764 222211111 11111111111 3344444444444332211
Q ss_pred CccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004610 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRM 396 (742)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-~g~~pd~~tyn~Li~~ 396 (742)
+- | +-++ .-....+.|+.++|.+-|+...+ .|..| ...||.-+.
T Consensus 143 ---~A---------------------------d--~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa- 187 (459)
T KOG4340|consen 143 ---EA---------------------------D--GQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA- 187 (459)
T ss_pred ---cc---------------------------c--hhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-
Confidence 00 0 0011 11223478999999999988766 46655 567886654
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC-------------CChhh--------HHHHHHHH-------HHcCCHHHHHHHHHHH
Q 004610 397 AMSMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSVF-------CNNGDVDKACSVEEHM 448 (742)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~-------------Pd~~t--------y~~lI~~~-------~~~g~~~~A~~l~~~M 448 (742)
..+.|+.+.|++...++.++|++ ||+++ -+.++.++ .+.|+.+.|.+-+-+|
T Consensus 188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 45678899999999999888764 34322 12344433 3568888999888888
Q ss_pred HHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChhH-HHHHHHHhhchHHHH
Q 004610 449 LEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAAR 509 (742)
Q Consensus 449 ~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~~~~ 509 (742)
.-+ .-..|.+|..-+--.- -.|++.+..+=++-+.... .+.++| .+++.-+|+..-..-
T Consensus 268 PPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred CCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhH
Confidence 633 3456777765332211 1233333333333333321 455555 466777888765433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.54 Score=44.19 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~t 424 (742)
++..+...|++++|.++...+.... +-|+..|-.+|.+|...|+..+|.+.|+.+.. .|+.|+..+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4555666677777777776666543 44666777777777777777777777666532 266665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.31 Score=50.22 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=67.8
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g----------------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (742)
.+.++-...-++.|++.|+.-|..+|+.||+.+=|.. +-+-+.+++++|...|+.||..+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4567777777889999999999999999999765432 223588999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHH
Q 004610 429 LSVFCNNGD-VDKACSVEEHMLE 450 (742)
Q Consensus 429 I~~~~~~g~-~~~A~~l~~~M~~ 450 (742)
|++|.+.+- +.+.+++.--|.+
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHhccccccHHHHHHHHHhhhh
Confidence 999999875 3444555544543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.81 Score=43.09 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=66.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~--~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (742)
+-..+...|++++|.+.|+........|+. ...-.|...+...|++++|+..++....... ....+...=+.|.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHC
Confidence 447788899999999999999987633322 2444567788899999999999977443333 334455566678999
Q ss_pred CCHHHHHHHHHH
Q 004610 436 GDVDKACSVEEH 447 (742)
Q Consensus 436 g~~~~A~~l~~~ 447 (742)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999975
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.64 Score=49.22 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (742)
.+|..+|+..-+.+..+.|..+|++..+.+ +..+++...++|. |...++.+.|..+|+...+. +..+..-|..-|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998654 5677777777776 33457788899999999876 45677888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 004610 467 SVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (742)
+.+.|+.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999998766
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=2.5 Score=46.42 Aligned_cols=97 Identities=12% Similarity=0.013 Sum_probs=77.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004610 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (742)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (742)
..+...|++++|+++|++..+.. .-+...|..+-.+|.+.|++++|...+++.+... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45668899999999999988653 2345667777788999999999999999998764 235677888888999999999
Q ss_pred HHHHHHHHHHHccCCCChhHH
Q 004610 475 RVYYLLHKLRTSVRKVSPSTA 495 (742)
Q Consensus 475 ~A~~ll~~M~~~~~~~~p~t~ 495 (742)
+|...|++.... .+.....
T Consensus 88 eA~~~~~~al~l--~P~~~~~ 106 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHH
Confidence 999999998876 4443333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.68 Score=43.50 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (742)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t 459 (742)
...++..+...|++++|..+...+... -.-|...|-.+|.+|...|+..+|.++|+.+.. -|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444555556666666665555443 123455555566666666666666555555432 255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=92.51 E-value=2.2 Score=41.07 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
+...+...|++++|...|++.....-.| ...+|..+-..+...|+.++|++.++....
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445566666666666554332111 123555555566666666666666655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.26 E-value=27 Score=40.57 Aligned_cols=188 Identities=10% Similarity=0.074 Sum_probs=117.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~~~g 436 (742)
-+..-..+.++++|..+|.+-+.. .|.+-.|.--++..--.+..++|.+++++..+. -|+..- |-.+=..+-+.+
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 556667778888888888887664 467777776666666778888888888776544 355433 222223344556
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh-HH-HHHHHHhhchHHHHhccc
Q 004610 437 DVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TA-DVIAKWFNSKEAARLGKK 513 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~-t~-~~I~~~~~~~~~~~a~~~ 513 (742)
+++.|.+.|..=. ...|+.. .|-.|-+.=-+.|.+-+|..+|++-+-+ .|... .| ..|..-.+.|....+.
T Consensus 700 ~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~-- 773 (913)
T KOG0495|consen 700 NIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAE-- 773 (913)
T ss_pred HHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHH--
Confidence 7777776664322 2345544 4555555556788999999999988766 44433 44 3366666666544443
Q ss_pred cchhHHHHHHh---hhcCCCccccccCCCCceEEEEeeecCCCccccccc
Q 004610 514 KWNESLIKDTM---ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGE 560 (742)
Q Consensus 514 ~w~~~~v~ea~---~~~g~~~~~m~~~g~~p~~v~~~~v~~~G~C~~c~~ 560 (742)
.++..++ .+.|-+|-+.+|+--.|..-+- .++.--.|..-..
T Consensus 774 ----~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~dph 818 (913)
T KOG0495|consen 774 ----LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHDPH 818 (913)
T ss_pred ----HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCCch
Confidence 3344444 4667788888888777776443 3433345544433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.3 Score=49.85 Aligned_cols=236 Identities=16% Similarity=0.131 Sum_probs=120.8
Q ss_pred hcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CCHHHHHHHH
Q 004610 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LGQYHYNVLL 233 (742)
Q Consensus 163 ~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~-~Gi~--------pd~~tyn~LL 233 (742)
.|+.+.|++-...+ ++. ..|.-|-+.|.+..+++-|.-.+..|.. +|.+ |+.. .+=.
T Consensus 741 iG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakv 806 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKV 806 (1416)
T ss_pred eccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHH
Confidence 46677777777776 344 8999999999999999999988888873 2321 1100 0001
Q ss_pred HHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHc
Q 004610 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (742)
Q Consensus 234 ~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~ 313 (742)
..++ -..|.+++|..+|. .-.+ |..|=+- |-..|.+++|.++-+.-.+.
T Consensus 807 AvLA---------ieLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 807 AVLA---------IELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred HHHH---------HHHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhccce
Confidence 1111 14577888888874 1111 1111111 66678888888776543332
Q ss_pred CCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCC--------CCC
Q 004610 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--------VPM 385 (742)
Q Consensus 314 G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g--------~~p 385 (742)
.+.-.-+-|. .-+++..+ . ..-|..|-|.|. -|+++++.+.+.- -.-
T Consensus 856 HLr~Tyy~yA--~~Lear~D--------------------i-~~AleyyEK~~~--hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 856 HLRNTYYNYA--KYLEARRD--------------------I-EAALEYYEKAGV--HAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred ehhhhHHHHH--HHHHhhcc--------------------H-HHHHHHHHhcCC--hHHHHHHHHHhChHHHHHHHHhcc
Confidence 2222222221 11111100 0 012333333332 1333333332210 012
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (742)
|...|.-.-.-+-..|+.|.|+.++..-+. |-+++...|-.|++++|-++-++- -|....-.|-+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 333333333344456777777776665432 334555566667777776666542 24444445556
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 004610 466 VSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M 483 (742)
.|-..|++.+|...|.+-
T Consensus 976 ~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 666666666666665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.70 E-value=5 Score=46.78 Aligned_cols=211 Identities=11% Similarity=0.096 Sum_probs=135.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCc
Q 004610 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (742)
Q Consensus 198 I~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~ 277 (742)
-..+...|-...|+.+|++. ..|--+|..|+ ..|..++|..+.. ++..+. .+
T Consensus 405 aell~slGitksAl~I~Erl---------emw~~vi~CY~----------~lg~~~kaeei~~------q~lek~---~d 456 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL---------EMWDPVILCYL----------LLGQHGKAEEINR------QELEKD---PD 456 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHH----------HhcccchHHHHHH------HHhcCC---Cc
Confidence 35566667777888877765 34555677777 5566666666653 233311 12
Q ss_pred ccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHH
Q 004610 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (742)
Q Consensus 278 ~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (742)
..-|..+-+. ..+..-+++|.++++..-.+- .- .++.
T Consensus 457 ~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r-------------------------------~~~~- 493 (777)
T KOG1128|consen 457 PRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QR-------------------------------SLAL- 493 (777)
T ss_pred chhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HH-------------------------------hhcc-
Confidence 2334444444 334444466666665432210 00 0011
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (742)
.....++++++.+.|+.-.+-. +.-..||=.+=-+..+.+++..|.+-|..... ..|| ...||.+=.+|.+.|
T Consensus 494 ---~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 494 ---LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLK 567 (777)
T ss_pred ---ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHh
Confidence 1123578888888887543321 22334555555555678899999999987653 3455 678999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+-.+|+..+.+..+.. .-+...|.--+-...+.|.+++|.+.+++|...
T Consensus 568 ~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999887 555566666666779999999999999887653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.32 E-value=27 Score=42.28 Aligned_cols=220 Identities=10% Similarity=-0.001 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCccc--ccc
Q 004610 206 DVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG--QLD 282 (742)
Q Consensus 206 ~~~~A~~lf~~M~~-~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~v--tyn 282 (742)
.+..|+.++...-. .+- |++..|.|-+-+. -.|+...+..+.. .+.......... +|-
T Consensus 251 s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fy----------fK~dy~~v~~la~-------~ai~~t~~~~~~aes~Y 311 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNE--NPVALNHLANHFY----------FKKDYERVWHLAE-------HAIKNTENKSIKAESFY 311 (1018)
T ss_pred HHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHh----------hcccHHHHHHHHH-------HHHHhhhhhHHHHHHHH
Confidence 34555555555442 222 4455566666555 5566666666653 222210000011 122
Q ss_pred cccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHH
Q 004610 283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (742)
Q Consensus 283 ~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (742)
-+=.+ +-..|++++|...|- ...+..||.+++. +-. |-..|
T Consensus 312 ~~gRs------~Ha~Gd~ekA~~yY~--~s~k~~~d~~~l~------------------------------~~G-lgQm~ 352 (1018)
T KOG2002|consen 312 QLGRS------YHAQGDFEKAFKYYM--ESLKADNDNFVLP------------------------------LVG-LGQMY 352 (1018)
T ss_pred HHHHH------HHhhccHHHHHHHHH--HHHccCCCCcccc------------------------------ccc-hhHHH
Confidence 23334 778899999998884 4455566765554 112 66788
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g----~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (742)
.+.|+++.|...|+...+.. +-+..|.-+|=..|+..+ ..+.|..++..-.+. ..-|...|-.+= -+...++.
T Consensus 353 i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~la-ql~e~~d~ 429 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELA-QLLEQTDP 429 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHH-HHHHhcCh
Confidence 89999999999999887753 223455555555555554 345555555554433 123344444333 33345666
Q ss_pred HHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 439 DKACSVEE----HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 439 ~~A~~l~~----~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..++.+|. .|..++-.+-....|.+-......|.+.+|...|..-...
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 66666664 3455666677888898888889999999999988776554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.12 E-value=35 Score=39.61 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.-|++|-+-|.+.|+++.|..+|++.... ..++.-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 67999999999999999999999998754 3467788888888883
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=91.05 E-value=4.1 Score=39.24 Aligned_cols=96 Identities=19% Similarity=0.104 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004610 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (742)
Q Consensus 386 d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (742)
-...|..+...+...|++++|+..|++.....-.| ...+|..+=..+...|+.++|...++...... .....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34567777888888999999999999887553222 23477777788899999999999999988652 2234455666
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 004610 464 LRVSV-------EAGKGDRVYYLLHK 482 (742)
Q Consensus 464 i~~~~-------~~g~~~~A~~ll~~ 482 (742)
...+. +.|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 77787766655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.2 Score=47.88 Aligned_cols=134 Identities=10% Similarity=0.002 Sum_probs=100.5
Q ss_pred cccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHH
Q 004610 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (742)
Q Consensus 277 ~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (742)
...+|-.+|+. .-+..-+..|..+|.+.++.+..+ | ++.++++
T Consensus 365 ~tLv~~~~mn~------irR~eGlkaaR~iF~kaR~~~r~~----h---------------------------hVfVa~A 407 (656)
T KOG1914|consen 365 LTLVYCQYMNF------IRRAEGLKAARKIFKKAREDKRTR----H---------------------------HVFVAAA 407 (656)
T ss_pred CceehhHHHHH------HHHhhhHHHHHHHHHHHhhccCCc----c---------------------------hhhHHHH
Confidence 55667666666 666666777888888777776555 0 3334445
Q ss_pred HHHHHHHhhcCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHH
Q 004610 357 IRLSEDAKKYAFQRGFEIYEK-MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFC 433 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~-M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~ 433 (742)
+|..||. ++.+-|.++|+- |+..|- +..--...++-+...++-..|..+|+.....++.|| ...|..+|.-=.
T Consensus 408 -~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 408 -LMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred -HHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 8888875 456789999985 444442 233446778888899999999999999998877666 489999999999
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 004610 434 NNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~ 451 (742)
.-|++..+.++-+++...
T Consensus 484 ~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 999999999999888653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.97 E-value=37 Score=39.55 Aligned_cols=119 Identities=11% Similarity=0.010 Sum_probs=73.4
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 004610 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (742)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (742)
..|..+.-..+|++.... ++-.++.|-...+-+-..|++..|..++.+..+..- -+...|-..+.--..+.+.+.|..
T Consensus 562 ~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHH
Confidence 345566666666666553 344556666666666667777777777766655522 145566666666667777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+|..... ..|+...|.--+...--.+..++|.+++++-.+.
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 7766554 3456666655555555566677777777665554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.70 E-value=43 Score=40.90 Aligned_cols=232 Identities=9% Similarity=0.047 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhh
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~--Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em 269 (742)
..-+..+.++..++-+.+-++++++..-. -+.-+.-.-|.||-.-.++ . -.+..+... -
T Consensus 985 e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika----------d-~trVm~YI~--------r 1045 (1666)
T KOG0985|consen 985 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA----------D-RTRVMEYIN--------R 1045 (1666)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc----------C-hHHHHHHHH--------H
Confidence 44566778888899999999999988732 2223333445555444422 1 122333321 1
Q ss_pred cccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccc--cccCCCchhhhhcCC
Q 004610 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS--NLERGPDDQSRKKDW 347 (742)
Q Consensus 270 ~~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~--~~a~~~~~~m~~~g~ 347 (742)
.++++.++...- ...++.+++|..+|++..-.+ ...+ .||+--. +.|.. |.+-..
T Consensus 1046 LdnyDa~~ia~i------------ai~~~LyEEAF~ifkkf~~n~-----~A~~--VLie~i~~ldRA~e-fAe~~n--- 1102 (1666)
T KOG0985|consen 1046 LDNYDAPDIAEI------------AIENQLYEEAFAIFKKFDMNV-----SAIQ--VLIENIGSLDRAYE-FAERCN--- 1102 (1666)
T ss_pred hccCCchhHHHH------------HhhhhHHHHHHHHHHHhcccH-----HHHH--HHHHHhhhHHHHHH-HHHhhC---
Confidence 111111111100 445567788888887643221 1111 2222111 01100 000000
Q ss_pred CcCHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004610 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (742)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (742)
....|+. +-.+-.+.|.+.+|++-|-+. -|...|.-+|+.+.+.|.+++-.+.+...++..-.|.+. +.
T Consensus 1103 --~p~vWsq-lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~e 1171 (1666)
T KOG0985|consen 1103 --EPAVWSQ-LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SE 1171 (1666)
T ss_pred --ChHHHHH-HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HH
Confidence 1234666 777777888888888776542 366789999999999999999888887777776666654 57
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (742)
||-+|++.+++.+-.++. .-||......+=+-|...|.++.|.-++...
T Consensus 1172 Li~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 899999999887655554 2477777777777777777777776666555
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.7 Score=45.28 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=72.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
.|.-+...|+...|.++-.+.+ .||..-|-..|++++..++|++-.++-+. .- ..+-|-+.+.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 4555667777777776655542 47788888888888888888876665432 12 34778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (742)
..+|..+... .++..-+..|.+.|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888877766 2235566777888888877665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.53 E-value=38 Score=38.95 Aligned_cols=137 Identities=12% Similarity=0.185 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHHcCCH
Q 004610 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (742)
Q Consensus 367 ~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~--------~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (742)
....|.+++...-...-.-..+.--.++......|+++.|.+++. .+.+.+..|-.+. ++...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCC
Confidence 466777777766554322224556667778889999999999999 6666677776654 456667777877
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHccCCCChh-HHHHHHHHhhchH
Q 004610 439 DKACSVEEHMLEH--GVYPEEPELEALL----RVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (742)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~Li----~~~~~~g~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~~ 506 (742)
+.|-.++.+.+.. .-.+.......++ ..-.+.|.-++|..+++++.+.. +.+.+ ....+.+++.-..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 7788888776542 1122223333333 33467899999999999998841 22222 3444777766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=90.28 E-value=8.3 Score=35.20 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR------LRSYGPALSV 431 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~ty~~lI~~ 431 (742)
..+-..|+.++|..+|++-...|.... ...+-.+-..+-..|++++|..+|++..... |+ ...+- -.+
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~--Al~ 84 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFL--ALA 84 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHH--HHH
Confidence 345567788888888888877776544 2344555666777888888888888766541 33 22221 224
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (742)
+...|+.++|.+.+-.... ++...|.--|..|..
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 5667888888877765542 344466666655543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=90.09 E-value=10 Score=43.74 Aligned_cols=269 Identities=10% Similarity=-0.004 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhc
Q 004610 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (742)
Q Consensus 192 ~tyn~lI~~~~~~g~~~~A~~lf~~M~~~G-i~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~ 270 (742)
..|....-++--.|+...|..+.++..+.- -.|+...|.-....+-+... -.+.|..+.|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i----~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI----LIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH----HHHcccHHHHHHHHH--------hh
Confidence 567777788888899999999999998654 36777777765554432110 016677777777763 11
Q ss_pred ccCCCCcccccccccccccccccccccCChHHHHHHHHHHHHcCCCCCccccc------hh-------HHhhccc-----
Q 004610 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRS----- 332 (742)
Q Consensus 271 ~~~g~~~~vtyn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~------~~-------~li~~~~----- 332 (742)
+. .+.|.+.|-- +.+ -.+-+.+++++|..++..+..+ -||-+-|. .+ .+-..|.
T Consensus 212 e~-~i~Dkla~~e-~ka----~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 212 EK-QIVDKLAFEE-TKA----DLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hh-HHHHHHHHhh-hHH----HHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 11 1111111100 000 0166778899999999888876 47777776 11 0001111
Q ss_pred ---------------------cccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHH----HHHHHHHHHhCCC----
Q 004610 333 ---------------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEV---- 383 (742)
Q Consensus 333 ---------------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~---- 383 (742)
.....++..+.++|+.+--.. +.+-|-.....+- +..+...|...|.
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d----l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD----LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh----hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 001113445556666543222 3233322221111 1222222222221
Q ss_pred ------CCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004610 384 ------PMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (742)
Q Consensus 384 ------~pd~~tyn--~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (742)
+|....|+ -++.-+-+.|+++.|...++.-... .|+. .-|-.=-..++.+|++++|...+++-.+.. .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 45555554 4666777899999999999976543 4654 233333366788999999999999987654 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 004610 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (742)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~ 487 (742)
||...-+--..-..++.+.++|.++.....+..
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 555544344445568899999999999988873
|
|
| >KOG3777 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.13 Score=56.72 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=73.8
Q ss_pred CCcccccccccccccCCC--CcCcccHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHhcCeeeeCC
Q 004610 603 GPFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATP 680 (742)
Q Consensus 603 ~pyD~viDG~NVg~y~~~--~~~~~~i~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (742)
.-+-++|||-|||+-..| -|++.-+.-.++++.++.. +..-+.+-..|. + +..|.+ ++.++.+...+-+||
T Consensus 11 ~~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~-rd~tv~~~~~r~-e---~~~p~~--~l~~l~~~~~~~ftp 83 (443)
T KOG3777|consen 11 YLRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGH-RDITVLVPSWRK-E---ATRPDA--ILRELEEKKILVFTP 83 (443)
T ss_pred cccCceeeccchhhcccchhheecccceeehhhhhhhcc-cCcchhchhhhh-c---CCchHH--HHHHHHhccccccCC
Confidence 346789999999966554 5777778878888877322 222222323221 1 123333 778888888888888
Q ss_pred CC--------CCCCccCCcccchhhhhhhhhcCCceEEeCcccccccccc
Q 004610 681 TG--------SNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQL 722 (742)
Q Consensus 681 ~~--------~~dd~~~~~~~~~~~~l~a~~~~~~~~vs~d~~rdh~~~l 722 (742)
.. +.||+ |..--+...+.+||+||-.||...+.
T Consensus 84 ~~~~~~~r~~c~~~r---------f~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 84 DRSIQGSRVICYDRR---------FSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred Chhhccceeeeehhh---------hHhhhhccccceecCCchHHHHHhhc
Confidence 76 78999 99999999999999999999976643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=15 Score=37.97 Aligned_cols=160 Identities=8% Similarity=-0.021 Sum_probs=96.9
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHhhcCHHHHHH
Q 004610 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (742)
Q Consensus 294 ~~~~g~~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (742)
+.+.|++++|...|++.... -|+.. +. . +. . -.+...|-+.++.++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~-~a----~---------------------~a-~--l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGP-YS----Q---------------------QV-Q--LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCh-HH----H---------------------HH-H--HHHHHHHHhcCCHHHHHH
Confidence 55689999999999998774 33331 11 0 00 0 115678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH--c---------------CC---HHHHHHHHHHHHHC----CCCCChhhHHH--
Q 004610 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSL----GINPRLRSYGP-- 427 (742)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~Li~~~~~--~---------------g~---~~~A~~l~~~M~~~----g~~Pd~~ty~~-- 427 (742)
.|++..+.--.-..+-|.-.+.+.+. . .+ ..+|++.|+++.+. ...|+....-.
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 99998876433233566666666552 1 12 23566666666544 11122221111
Q ss_pred ----------HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004610 428 ----------ALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (742)
Q Consensus 428 ----------lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (742)
+-.-|.+.|....|..=++.+++. +........-.|+.+|.+.|..++|......+.
T Consensus 171 ~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 171 KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 333466677777777777777764 334445556677777777777777777665553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=89.90 E-value=8.6 Score=35.66 Aligned_cols=119 Identities=8% Similarity=-0.011 Sum_probs=85.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+|..+...+.......+++.+...+ ..+...+|.+|..|++... ....+.+.. .++.+...-++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 7888888899999999999998887 3788899999999998743 444555542 2455556668998989999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHccCCCChhHHHHHH
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~~~~~~p~t~~~I~ 499 (742)
++++..++..+.. |.-.++.+... ++.+.|.+.+.+- -.|+.|..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~ 132 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVL 132 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHH
Confidence 9999999987731 22233334444 7888888887652 2455665533
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.85 E-value=8.3 Score=42.88 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=89.3
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (742)
-..|++..|.++|+.-.+ ..|++..|.+.|+-=.+...++.|..+++...-. .|++.+|---..-=-++|++..|.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 356788999999988665 4799999999999999999999999999987644 499998888777777899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc
Q 004610 443 SVEEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~----~~~g~~~~A~~ll~~M~~~ 486 (742)
.+|+...+. .-|...-..|+.++ .++..+++|.-++.--.+.
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887653 12333334444444 3456677777777766655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=8.7 Score=40.24 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELE 461 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~ 461 (742)
..|...+..+.+.|++++|...|+.+.+.- |+. ..+--+-..|...|+.++|...|+.+.+.- -......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 445555555555677777777777766541 332 233345556667777777777777776531 011122333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCChh
Q 004610 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (742)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (742)
.+...+...|+.++|..+|+++.+. .|...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 3444556778888888888877776 55443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=89.78 E-value=33 Score=37.08 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=120.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccccCCcccCCCC-CHHHHHHHhhhhcccchhhcccCCC
Q 004610 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDM 275 (742)
Q Consensus 198 I~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~~~~~~~~~~~~~~k~G-~~~~A~~~f~~~~~~s~em~~~~g~ 275 (742)
-..+...++.++|+.+++++++. .|+-. .|+..=..+. +.| ..+++++.++ ++... ..
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-np 103 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NP 103 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CC
Confidence 33355667889999999998864 34332 3332222233 333 4567777764 33322 22
Q ss_pred CcccccccccccccccccccccCC--hHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHh
Q 004610 276 DNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (742)
Q Consensus 276 ~~~vtyn~lI~~~~~~~~~~~~g~--~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (742)
++.-.|+..-.. +.+.|. .+++..++++|.+. |.- |..+
T Consensus 104 knyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~----dpk-----------------------------Ny~A 144 (320)
T PLN02789 104 KNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSL----DAK-----------------------------NYHA 144 (320)
T ss_pred cchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHh----Ccc-----------------------------cHHH
Confidence 233334422111 222232 24556666666543 222 2234
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHCCCCCChhhHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYG 426 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~---g~~----~~A~~l~~~M~~~g~~Pd~~ty~ 426 (742)
|+. .--.+.+.|++++|++.++++.+.+. -|...|+-.--.+.+. |.. +++++...++... -.-|...|+
T Consensus 145 W~~-R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~ 221 (320)
T PLN02789 145 WSH-RQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWR 221 (320)
T ss_pred HHH-HHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHH
Confidence 444 44555566889999999999988763 4556777666555554 222 4566666555443 223567777
Q ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004610 427 PALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (742)
Q Consensus 427 ~lI~~~~~~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (742)
-+-..+... +...+|.+.+.+....+ ..+......|++.|+..
T Consensus 222 Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 222 YLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 777667663 34456888888866543 34677888999999864
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.55 E-value=11 Score=40.25 Aligned_cols=153 Identities=13% Similarity=0.171 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHcCCCCCccccchhHHhhccccccCCCchhhhhcCCCcCHHhhHHHHHHHHHh----hcCHHHHHHHH
Q 004610 300 FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIY 375 (742)
Q Consensus 300 ~~~A~~lf~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf 375 (742)
+++...+++.|.+.|+.-+..+|- .++ +|...+. ...+.+|.++|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~l-----aA~--------------------------~i~~~~~~~~~~~~~~ra~~iy 126 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYL-----AAL--------------------------IILEEEEKEDYDEIIQRAKEIY 126 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHH-----HHH--------------------------HHHHhcccccHHHHHHHHHHHH
Confidence 567788999999999998887773 111 1222211 12467899999
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCC---HHHHHHH
Q 004610 376 EKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD---VDKACSV 444 (742)
Q Consensus 376 ~~M~~~g~---~pd~~tyn~Li~~~~~~g~~----~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~---~~~A~~l 444 (742)
+.|++.-. .++-.++.+|+.. ...++ +.++.+++.+...|+..+- .-+-+-|-+++.... +.++.++
T Consensus 127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99998642 3677888888776 44443 4678888888888876543 344455555555432 4578899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHc
Q 004610 445 EEHMLEHGVYPEEPELEALLRVSVEAGK-----GDRVYYLLHKLRTS 486 (742)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~-----~~~A~~ll~~M~~~ 486 (742)
++.+.+.|+++....|..| ..++-.+. .++..++.+++.+.
T Consensus 205 ~~~l~~~~~kik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHcCCccccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 9999999999888887654 33333332 33444455555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.95 E-value=9.2 Score=45.65 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=98.4
Q ss_pred HhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~--~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
...+++..|.....++.++ -||. .|..+++++. +.|+.++|..+++.....+.. |..|...+-..|-..|..++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567888999888887665 2553 5666666654 799999999999988766555 89999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCChh--HHHHHHHHhhc
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS 504 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (742)
|..+|++.... .|+..-...++.+|.|.+.+.+-.+.=-+|-+. .+... .|.++.-.+.+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHh
Confidence 99999998754 688888899999999999876533333333332 22222 45554444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.88 E-value=8.6 Score=41.02 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCC---ccccccc
Q 004610 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (742)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~---~~vtyn~ 283 (742)
+++.+.+++.|++.|++-+.++|-+..-...... .....-.+.+|..+| +.|.++..+- +.+++.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 4667789999999999999988887555554211 000112355677777 3677664443 5666666
Q ss_pred cccc
Q 004610 284 GSSP 287 (742)
Q Consensus 284 lI~~ 287 (742)
|+..
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 6655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.85 E-value=49 Score=37.86 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=91.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChh----hHHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLR----SYGPALSVFC 433 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~----ty~~lI~~~~ 433 (742)
--|.+.+.++.|.++|.+...- .+-|...++-+=-.....+.+.+|...|+.-... .+.+... +++-|=++|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 3577888999999999876543 2335666666666666788899999999876522 2223333 3455566788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (742)
+.+..++|...++.-+... .-|..+|.++--.|...|+++.|.+.|++-..
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 8899999999999887653 45788888888888999999999999988754
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.7 Score=34.31 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
..+.+.|++++|.+.|++..+.. +-+...+..+-..+...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556677777777777776654 22555666666666777777777777776643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=88.46 E-value=2 Score=33.93 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+.+.|++++|...|+..++.. | +...+..+-..+...|++++|..+|++..+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666554 3 3444555555566666666666666666443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.60 E-value=4.1 Score=32.86 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=36.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..|.+.+++++|.++++.+.... ..+...|...=..+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667777777777777777653 224444555556667777777777777777665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.34 E-value=48 Score=38.12 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=81.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH--HHHHHH--H
Q 004610 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP--ALSVFC--N 434 (742)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~--lI~~~~--~ 434 (742)
|+.+.+.|++++|.....++...+ +-|+..+-.-+-++.+.+.+++|+++.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 567788899999999999988765 44556666667778889999999966543 22 1122222 355666 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.+..++|...++ |+.++.. +...=-+.+-+.|++++|+++++.+.++
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 688899988887 4444333 4444445677889999999999999766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.70 E-value=34 Score=35.28 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=92.5
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+--.|+-+.+..+....... -.-|....+.++....+.|++.+|...|.+...- -.||...|+.+=-+|-+.|+.+
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 4444555555555555443322 1235556667999999999999999999997644 6789999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
.|..-|....+--. -+...+|-|--.|.-.|+.+.|..++..-...
T Consensus 152 ~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 152 EARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999988776421 13344566666677889999999999988776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=86.52 E-value=44 Score=36.04 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004610 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (742)
Q Consensus 387 ~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (742)
..+.+.-|.-+...|+...|.++-++. ++ ||.+-|-.-|.+|+..+++++-..+... +-.++-|..++..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 345666788888999999999987765 34 8999999999999999999887765432 2234889999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 004610 467 SVEAGKGDRVYYLLHKL 483 (742)
Q Consensus 467 ~~~~g~~~~A~~ll~~M 483 (742)
|.+.|...+|..++.++
T Consensus 247 ~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 99999999999998884
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=85.77 E-value=16 Score=33.30 Aligned_cols=88 Identities=22% Similarity=0.207 Sum_probs=64.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH-HHHHHHH
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPEL-EALLRVS 467 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd---~~ty-~~Li~~~ 467 (742)
-.++-..|+.++|..++++-...|+.... ..+-.+=..+...|+.++|..++++....- |+ .... ..+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 34566789999999999999998876653 344455667778899999999999887652 44 1111 2223466
Q ss_pred HHcCCHHHHHHHHHHH
Q 004610 468 VEAGKGDRVYYLLHKL 483 (742)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (742)
...|+.++|...+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7889999999887654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.70 E-value=26 Score=36.35 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=96.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-----H
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-----~ 432 (742)
++....-.+.+.-...++++..+..-+.+.+....|.+.-.+.|+.+.|...|+...+..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 45555556677777888999888777778899999999999999999999999988776555676777765543 3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHccCCCChhH
Q 004610 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~t 494 (742)
.-.++...|...+.+.....- -|...-| +|+..| .|+..+|.+.+..|... -|.|.+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred ecccchHHHHHHHhhccccCC-CchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccch
Confidence 345788888888888876541 2222222 454444 58899999999999887 566653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=13 Score=39.00 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----hhh
Q 004610 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRS 424 (742)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~t 424 (742)
.|+. .+..+.+.|++++|...|+.+...- |+. ..+--+-..|...|+.++|...|+.+.+.- |+ ...
T Consensus 145 ~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 145 DYNA-AIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 4555 5555567799999999999998753 433 356677888999999999999999997641 22 222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 425 YGPALSVFCNNGDVDKACSVEEHMLEH 451 (742)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (742)
+--+...+-..|+.++|..+|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 223445566889999999999988765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=84.30 E-value=14 Score=35.27 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=52.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (742)
-..+...|++++|..+|+-.... .|....|-.=+.++++ .|++++|...|........ -|...+-.+=.++...|+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 33445667777777777665543 3444444333444433 4677777777776665542 344555555566667777
Q ss_pred HHHHHHHHHHHHHc
Q 004610 473 GDRVYYLLHKLRTS 486 (742)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (742)
.+.|.+-|+.-...
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666555
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=18 Score=34.54 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=70.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (742)
..+...|++++|..+|+.+..-. +-+..-|-.|--++-..|++++|++.+........ -|.+.|=-+=.++...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 45678899999999999988753 22445556666667779999999999999877653 45566666777899999999
Q ss_pred HHHHHHHHHHHC
Q 004610 440 KACSVEEHMLEH 451 (742)
Q Consensus 440 ~A~~l~~~M~~~ 451 (742)
.|.+-|+.-+..
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 999999877644
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=48 Score=34.20 Aligned_cols=88 Identities=8% Similarity=-0.079 Sum_probs=55.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHc
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNN 435 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~ 435 (742)
+|.-|-...-..+|...+..++.. .-..-+ .+.+-|.+.|.+..|..=|+.+.+. +........-.++.+|-..
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 555555555555665544444332 001111 4556688888888888888888765 3334445556678888888
Q ss_pred CCHHHHHHHHHHHH
Q 004610 436 GDVDKACSVEEHML 449 (742)
Q Consensus 436 g~~~~A~~l~~~M~ 449 (742)
|..++|..+..-+.
T Consensus 226 g~~~~a~~~~~~l~ 239 (243)
T PRK10866 226 QLNAQADKVAKIIA 239 (243)
T ss_pred CChHHHHHHHHHHh
Confidence 98888887766543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=83.83 E-value=42 Score=35.34 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--hhhHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-----MNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPR--LRSYGP 427 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~-----pd~~-tyn~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd--~~ty~~ 427 (742)
+...+.+.|++++|.++|++....-.. .+.- .|-..+-++...|++..|.+.|++.... ++..+ ...-..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 667899999999999999998765332 2222 2223344666789999999999998644 23222 334444
Q ss_pred HHHHHHHc--CCHHHHHHHHHHH
Q 004610 428 ALSVFCNN--GDVDKACSVEEHM 448 (742)
Q Consensus 428 lI~~~~~~--g~~~~A~~l~~~M 448 (742)
||.+|=.. ..++.|..-|+.+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHccc
Confidence 56655432 2445555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=83.62 E-value=2.5 Score=34.80 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMN-EASLTAVGRMAMSMGDGDMAFDMVKR 412 (742)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~----g~-~pd-~~tyn~Li~~~~~~g~~~~A~~l~~~ 412 (742)
|++ +-..|...|++++|++.|++...- |- .|+ ..+++.+-..+...|+.++|++.+++
T Consensus 8 ~~~-la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 8 YNN-LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHH-HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444 556666666666666666654421 11 122 34555556666666666666666654
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=82.83 E-value=3.7 Score=33.69 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~----g-~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (742)
.+|+.+-..|...|++++|++.|++..+. | -.|+ ..+|+.+=..|...|+.++|.+.+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666777777777777777665422 1 1122 344555555555566666666665543
|
... |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=82.15 E-value=28 Score=42.64 Aligned_cols=121 Identities=9% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-----------
Q 004610 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----------- 422 (742)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----------- 422 (742)
.||+.|-..+++++|.++.++-.+. .|+. .-|..+ .+.+.++.++|..+ .+... +..+.
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHHH
Confidence 3889999999999999998865543 3433 233333 55566666655555 22211 11111
Q ss_pred --------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 423 --------RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 423 --------~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
..+-.+-.+|-+.|+.++|..+|+++.+.. .-|....|-+--.|+.. ++++|.+++.+-...
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344456666667799999999999998876 44566777777777777 788777776655443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.06 E-value=11 Score=39.85 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004610 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (742)
Q Consensus 382 g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (742)
|......+...++..-....+++.+...+-.++.. -..|+...|. .|. +|-.=+.+++..+...=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 44445555555555555566666666666665533 1334443333 222 334445556666666666667777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
+++.||+.+.+.++..+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777766666555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=81.53 E-value=6.5 Score=31.26 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRM 413 (742)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g-~~~~A~~l~~~M 413 (742)
+=..+...|++++|+..|.+..+.. +-+...|..+-.++...| ++++|++.++..
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3344555555666666665555432 223445555555555555 455555555543
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=81.52 E-value=31 Score=38.67 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=52.7
Q ss_pred CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004610 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (742)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~Li~~~~~~g~~~~A~~l~~~M~~~ 416 (742)
+...|++ +-..|.+.|++++|+..|++-.+. .||. .+|..+-.+|++.|+.++|+..+++..+.
T Consensus 74 ~a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456667 788899999999999999987664 4653 46899999999999999999999988765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=81.40 E-value=24 Score=40.36 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=81.8
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHHcCCHHH
Q 004610 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~-~~~~~g~~~~A~~l~~~M~~~g---~~Pd~~ty~~lI~~~~~~g~~~~ 440 (742)
....+.|.++++.+..+ -|+...|...-. .+...|++++|.+.|++..... -+.....|--+.-.++-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 55889999999999886 588777765543 4556999999999999754321 11122333335556777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCH-------HHHHHHHHHHHH
Q 004610 441 ACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRT 485 (742)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~-------~~A~~ll~~M~~ 485 (742)
|.+.|.++.+.. ..+..+|.-+..+| ...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999754 33455555444443 456666 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.09 E-value=5.9 Score=31.88 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~ 415 (742)
.|.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|...|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666666665543 22444555555555666666666666665553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=80.53 E-value=8.2 Score=30.67 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHH
Q 004610 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSVEEHM 448 (742)
Q Consensus 388 ~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-~~~~A~~l~~~M 448 (742)
.+|..+-..+...|++++|+..|++..+.. .-+...|..+=.+|.+.| +.++|.+.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 445555555555566666666555554431 113334444444455555 455555555543
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.48 E-value=76 Score=32.89 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=81.8
Q ss_pred HHHhhcCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (742)
+....|+.+-|...++.+..+- |.. .-..+| .+-..|..++|.++++.+.+.. .-|.++|--=|...-..|.
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 3446677888888888887653 332 222221 1335778888999998887765 4455666554444555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (742)
--+|.+-+.+-.+. +.-|...|.-|-..|...|++++|.-.+++|.-.
T Consensus 136 ~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 66676666665544 4678888888889999999999999888888765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.05 E-value=1.2e+02 Score=34.89 Aligned_cols=265 Identities=13% Similarity=0.024 Sum_probs=159.2
Q ss_pred HHHhhcCcchHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~~~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
..-...++.+..+++++..+. .++..-.+-.=|.++-..|+..+-..+=..|.+. .+-..++|=++=--|-
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl- 323 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-------DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL- 323 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-------CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH-
Confidence 344567888899999987432 2344456667788999999988877777788754 3334566666544444
Q ss_pred cccCCcccCCCCCHHHHHHHhhhhcccchhhcccCCCCcccc--cccccccccccccccccCChHHHHHHHHHHHHc--C
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL--G 314 (742)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~~f~~~~~~s~em~~~~g~~~~vt--yn~lI~~~~~~~~~~~~g~~~~A~~lf~~M~~~--G 314 (742)
-.|+..+|++.|... -+++ +.+. |=..=+. |+-.|..|+|+.-+..--+. |
T Consensus 324 ---------~i~k~seARry~SKa-----t~lD-----~~fgpaWl~fghs------fa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 324 ---------MIGKYSEARRYFSKA-----TTLD-----PTFGPAWLAFGHS------FAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred ---------HhcCcHHHHHHHHHH-----hhcC-----ccccHHHHHHhHH------hhhcchHHHHHHHHHHHHHhccC
Confidence 447788888888522 1122 2221 3222233 55666666666655543221 1
Q ss_pred -CCCCccccchhHHhhccc---cccCCCchhhhhcCCCc-CHHhhHHHHHHHHHhhcCHHHHHHHHHHHHh--CCCCC--
Q 004610 315 -QFSNGHMKLNSQLLDGRS---NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL--DEVPM-- 385 (742)
Q Consensus 315 -~~Pd~~ty~~~~li~~~~---~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~--~g~~p-- 385 (742)
..|-..+= +-.+.. +.|++.|... .++.| |....+. +=-..-..+.+.+|...|+.-.. ..+.+
T Consensus 379 ~hlP~LYlg----mey~~t~n~kLAe~Ff~~A--~ai~P~Dplv~~E-lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 379 CHLPSLYLG----MEYMRTNNLKLAEKFFKQA--LAIAPSDPLVLHE-LGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred CcchHHHHH----HHHHHhccHHHHHHHHHHH--HhcCCCcchhhhh-hhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 11211110 000000 2222222221 12223 3333333 21122245677888888876552 11111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004610 386 --NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (742)
Q Consensus 386 --d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (742)
=+.+++.|=..|-+.+..++|+..++.-... ..-|..||.++=-.|...|+++.|.+.|..-. .+.||..+-..|
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHH
Confidence 2346788888899999999999999987655 45678888888888899999999999998766 468998888888
Q ss_pred HHHH
Q 004610 464 LRVS 467 (742)
Q Consensus 464 i~~~ 467 (742)
+..+
T Consensus 529 L~~a 532 (611)
T KOG1173|consen 529 LKLA 532 (611)
T ss_pred HHHH
Confidence 8744
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 742 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-104 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-98 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 3e-17
Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGN 725
++ + + L TP+ + R+ + A + ++V+ND RD +
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYD-DRFIVKLAYESDGIVVSNDTYRDLQGE---R 142
Query: 726 DFFPRWKERHQVS 738
+ R+ E +
Sbjct: 143 QEWKRFIEERLLM 155
|
| >3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Length = 223 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 6e-14
Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKCLLVTNDEMRDHTFQLLGN 725
++ + + L TP+ + R+ + A + ++V+ND RD +
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYD-DRFIVKLAYESDGIVVSNDTYRDLQGE---R 142
Query: 726 DFFPRWKERHQVS 738
+ R+ E +
Sbjct: 143 QEWKRFIEERLLM 155
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 4e-08
Identities = 78/565 (13%), Positives = 158/565 (27%), Gaps = 173/565 (30%)
Query: 8 NTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLST 67
+ + +LF L K + + +F+ L+ Q + T
Sbjct: 59 DAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 68 TETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSR 127
+ RD+ D + K N SR +LK R
Sbjct: 110 RMYIEQ---------------------RDRL------YNDNQVFAKYNVSRLQ-PYLKLR 141
Query: 128 EMSSGNSSLRSKDKKIGI-------KSSKTVNREVDNQKMEQRTNDSGQY--KVRGITDE 178
+ LR K + I K+ + +V Q D + +
Sbjct: 142 QALL---ELRP-AKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNL------ 189
Query: 179 KGSKKSKKDRSEQFQ---LRVELDMCSKRGDVMGAIRLYDKAQREGIK---LGQYHYNVL 232
+ S + E Q +++ + S R D I+L + + ++ + + N L
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 233 LYL---CSSAAVGVVKPAKSGSGMRTLDTFEVS--TMNSTELGDSRDMDNNGQLDYGSSP 287
L L ++ + + F +S + +T R
Sbjct: 248 LVLLNVQNA---------------KAWNAFNLSCKILLTT-----RFKQV---------- 277
Query: 288 MIDKLESNSSYRF--DDLDSTFNEKENLGQFSNG-HMK---LNSQLLDGRSNL------E 335
D L + ++ D T E + L ++L + E
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAE 335
Query: 336 RGPDDQSRKKDW--------------SIDNQDADEIRLSEDAKKYA----FQRGFEIYEK 377
D + +W S++ + E R K + F I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTI 390
Query: 378 -MCL---------DEVPMNE---ASLTAVGRMAMSMGDGDMAFDM-VKRMKSLGINPRLR 423
+ L V +N+ SL ++ + ++ VK ++ +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVY----PEEPELEALLRVSVEAGKGDRVY-- 477
+ F ++ + ++++ H + E PE L R V+
Sbjct: 451 DHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFLD 499
Query: 478 --YLLHKLR--TSVRKVSPSTADVI 498
+L K+R ++ S S + +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL 524
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 9e-07
Identities = 89/631 (14%), Positives = 176/631 (27%), Gaps = 216/631 (34%)
Query: 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKK------DRSEQF---QLRVELDMCS 202
E+D+ + + SG ++ K + +K + +F ++ E
Sbjct: 48 KEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QR 103
Query: 203 KRGDVMGAIRLY----DKAQREGIKLGQYHY----------NVLLYLCSSAAVGVVKPAK 248
+ + R+Y D+ + +Y+ LL L + V +
Sbjct: 104 QPSMMT---RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---- 156
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
G+ LG G + + + +
Sbjct: 157 ---GV---------------LG------------SGKTWVA-----LDVCLSYKVQCKMD 181
Query: 309 EKENLGQF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + + +L+ L D +W+ + + I+L + +
Sbjct: 182 ----FKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQA 232
Query: 367 AFQRGF--EIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421
+R + YE CL V + A AF++ K L + R
Sbjct: 233 ELRRLLKSKPYEN-CLLVLLNV----QNAKAWN-----------AFNL--SCKIL-LTTR 273
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLL 480
+ V D A + L+H E+++LL ++ D
Sbjct: 274 FKQ------VT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------ 317
Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
L V +P +IA E+ R G W+ W
Sbjct: 318 --LPREVLTTNPRRLSIIA------ESIRDGLATWDN------------------WKHVN 351
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEK-------FAESVASIAIKRERNSSFQ 593
++ + ++ L+P E K F S I
Sbjct: 352 CDKLTTII------------ESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL-----LS 393
Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWP---LIVLHN 650
W D V+ VVN + + +K P I + +
Sbjct: 394 LI--WFD--VIKSDVMV-------------------VVNKLHKYSLVEKQPKESTISIPS 430
Query: 651 --RRITGHKMDQP-VNRALIEKWKNADALYATPTGSNDDCTMDNNVCFRYWLYAAIKFKC 707
+ ++ ++R++++ + +DD +Y+ Y+ I
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTF------DSDDLIPPYL--DQYF-YSHIGHHL 481
Query: 708 LLVTNDEMRDHTFQLLGNDFFPRW---KERH 735
+ + E R F+++ DF R+ K RH
Sbjct: 482 KNIEHPE-RMTLFRMVFLDF--RFLEQKIRH 509
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.22 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.21 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.99 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.47 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.07 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 96.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 96.83 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.55 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.13 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 95.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 95.45 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.14 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 95.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 94.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 94.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.2 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 93.95 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 93.45 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 93.26 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 93.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 90.52 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 90.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 87.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 86.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 86.37 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=8e-08 Score=64.11 Aligned_cols=309 Identities=9% Similarity=-0.088 Sum_probs=187.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 98741593239999999975289888899885999999999999159978999999999992999899999999999870
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
..-+.++..+|.+.++...+.. | -+...+..+-..+.+.|++++|+..|+...+.. +-+..++..+-..+.
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~--p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~- 78 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK- 78 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-
T ss_conf 9998699999999999999868--9-----989999999999998699999999999999859-998999999999964-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 54587666888977779988542014501000258998643210022554322100126895779999999998499888
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~Pd 318 (742)
+.|+.++|...+. ..... ...+...+...... .........+...............
T Consensus 79 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (388)
T d1w3ba_ 79 ---------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp ---------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred ---------HHCCCCCCCCCCC-------CCCCC-CCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ---------2000222222222-------12112-22222222222222------2222222222222111222222222
Q ss_pred CCCCCHHHHHHCCC--CCCCCCCHHHHHCCCCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 22211067760112--2247993344215998687-75489999899820599999999999885999999999999999
Q 004610 319 GHMKLNSQLLDGRS--NLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (742)
Q Consensus 319 ~~ty~~~~li~~~~--~~a~~~~~~m~~~g~~pd~-~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~ 395 (742)
.............. ..+........ ...|+. ..+.. +...+...+..++|...+++..... +-+...|..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 211 (388)
T d1w3ba_ 136 CVRSDLGNLLKALGRLEEAKACYLKAI--ETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH--HHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 222222222211000135678888740--258610689986-3630102471999999999999849-464999999715
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99985997799999999998899878511999999999759988999999999978998999999999999998399999
Q 004610 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (742)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~ 475 (742)
.+...|++++|...+........ .+...+..+-..+.+.|+.++|...+++..+.. .-+...|..+-..+...|+.++
T Consensus 212 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 212 VLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 52200529999999998577755-479999999999998789999999999999849-9989999999999997487999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHH-HHHHHHCHHH
Q ss_conf 99999999873599995-49999-9999605488
Q 004610 476 VYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEA 507 (742)
Q Consensus 476 A~~ll~~M~~~~~~~~p-~t~~~-I~~~~~~~~~ 507 (742)
|...++..... .+.. ..+.. ...+...+..
T Consensus 290 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 290 AEDCYNTALRL--CPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCH
T ss_conf 99999865404--873001015799999987899
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=9.5e-08 Score=63.61 Aligned_cols=268 Identities=14% Similarity=-0.009 Sum_probs=127.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 98741593239999999975289888899885999999999999159978999999999992999899999999999870
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
...+.++.++|.+.++...+.. | -+...|..+...+.+.|++++|+..+........... ............
T Consensus 42 ~~~~~~~~~~A~~~~~~al~~~--p-----~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 113 (388)
T d1w3ba_ 42 IHFQCRRLDRSAHFSTLAIKQN--P-----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI-DGYINLAAALVA 113 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--C-----CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf 9998699999999999999859--9-----9899999999996420002222222221211222222-222222222222
Q ss_pred CCCCCCC------------------------CCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5458766------------------------6888977779988542014501000258998643210022554322100
Q 004610 239 AAVGVVK------------------------PAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLES 294 (742)
Q Consensus 239 ~~~~~~~------------------------~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li~~~~~~~~~ 294 (742)
....... ....+....+...+. ..... ...+...+..+... +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~------~ 179 (388)
T d1w3ba_ 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------F 179 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------H
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-------HHHCC-CCCHHHHHHHHCCC------C
T ss_conf 2222222222111222222222222222222211000135678888-------74025-86106899863630------1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 12689577999999999849988822211067760112224799334421599868775489999899820599999999
Q 004610 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEI 374 (742)
Q Consensus 295 ~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~l 374 (742)
...|..++|...+.+.... .|+. ...|.. +-..+...|++++|...
T Consensus 180 ~~~~~~~~A~~~~~~al~~--~p~~-------------------------------~~~~~~-l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 180 NAQGEIWLAIHHFEKAVTL--DPNF-------------------------------LDAYIN-LGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHH--CTTC-------------------------------HHHHHH-HHHHHHTTTCTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--CCCC-------------------------------HHHHHH-HHHHHHCCCCHHHHHHH
T ss_conf 0247199999999999984--9464-------------------------------999999-71552200529999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99988599999999999999999985997799999999998899878511999999999759988999999999978998
Q 004610 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (742)
Q Consensus 375 f~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~ 454 (742)
++...... ..+...+..+...+.+.|+.++|...|++..+.. .-+...|..+-..+...|+.++|...++...... .
T Consensus 226 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 302 (388)
T d1w3ba_ 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P 302 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-C
T ss_conf 99857775-5479999999999998789999999999999849-9989999999999997487999999998654048-7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999983999999999999987
Q 004610 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 455 pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~ 485 (742)
.+...+..+...+...|+.++|...+++..+
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 3001015799999987899999999999998
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=8.1e-07 Score=57.70 Aligned_cols=240 Identities=9% Similarity=-0.040 Sum_probs=150.4
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 98741593239999999975289888899885999999999999159978999999999992999899999999999870
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
..-+.++..+|.+.|+...+.. +-+...|..+-..+...|+++.|+..|.+..+.. +-+...+..+...+.
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 98 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 98 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCC-
T ss_conf 9998599999999999999868-------9989999999999998377588999998510022-222222222222222-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 54587666888977779988542014501000258998643210022554322100126895779999999998499888
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~Pd 318 (742)
..|..++|.+.+. +.... .|+
T Consensus 99 ---------~~~~~~~A~~~~~------------------------------------------------~~~~~--~~~ 119 (323)
T d1fcha_ 99 ---------NESLQRQACEILR------------------------------------------------DWLRY--TPA 119 (323)
T ss_dssp ---------HTTCHHHHHHHHH------------------------------------------------HHHHT--STT
T ss_pred ---------CCCCCCCCCCCHH------------------------------------------------HHHHH--CCC
T ss_conf ---------2221121110002------------------------------------------------67773--610
Q ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q ss_conf 222110677601122247993344215998687754899998998205999999999998859-9999999999999999
Q 004610 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMA 397 (742)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~ty~~Li~~~ 397 (742)
...... ........ . +...... .+..+...+...+|.+.|...... .-.++...+..+...+
T Consensus 120 ~~~~~~-~~~~~~~~-----------~----~~~~~~~-~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 120 YAHLVT-PAEEGAGG-----------A----GLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp TGGGCC-------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHH-----------C----CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 678887-66400000-----------0----0100001-47888876579999999999999713012221110368888
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98599779999999999889987851199999999975998899999999997899899999999999999839999999
Q 004610 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (742)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~ 477 (742)
...|+.++|...+++..... .-+...|..+-..+...|+.++|...++...+.. .-+...|..|-..|.+.|+.++|.
T Consensus 183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 88887755002111222222-2221110133301221111013788877899884-324999999999999878999999
Q ss_pred HHHHHHHH
Q ss_conf 99999987
Q 004610 478 YLLHKLRT 485 (742)
Q Consensus 478 ~ll~~M~~ 485 (742)
..|.+-.+
T Consensus 261 ~~~~~al~ 268 (323)
T d1fcha_ 261 EHFLEALN 268 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.6e-05 Score=47.25 Aligned_cols=215 Identities=9% Similarity=-0.045 Sum_probs=125.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf 99915997899999999999299989999999999987054587666888977779988542014501000258998643
Q 004610 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (742)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~v 279 (742)
.+.+.|++++|+..|+.+.+.. +-+...|..+-..+. ..|+.++|...|
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~----------~~~~~~~A~~~~-------------------- 76 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISAL-------------------- 76 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH--------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----------HCCCHHHHHHHH--------------------
T ss_conf 9998599999999999999868-998999999999999----------837758899999--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHH
Q ss_conf 21002255432210012689577999999999849988822211067760112224799334421599868775489999
Q 004610 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (742)
Q Consensus 280 tyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI 359 (742)
.+..+. .|+. ...|.. +.
T Consensus 77 ----------------------------~~al~~--~p~~-------------------------------~~~~~~-la 94 (323)
T d1fcha_ 77 ----------------------------RRCLEL--KPDN-------------------------------QTALMA-LA 94 (323)
T ss_dssp ----------------------------HHHHHH--CTTC-------------------------------HHHHHH-HH
T ss_pred ----------------------------HHHHCC--CCCC-------------------------------CCCCCC-CC
T ss_conf ----------------------------851002--2222-------------------------------222222-22
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCHHH
Q ss_conf 8998205999999999998859999--------------99999999999999859977999999999988-99878511
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVP--------------MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRS 424 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~--------------pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~t 424 (742)
..|...|++++|.+.+++.....-. .+.......+..+...+...+|...+...... .-.++...
T Consensus 95 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~ 174 (323)
T d1fcha_ 95 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 22222221121110002677736106788876640000000100001478888765799999999999997130122211
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHH-HHHHHHH
Q ss_conf 999999999759988999999999978998999999999999998399999999999998735999-95499-9999996
Q 004610 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVIAKWF 502 (742)
Q Consensus 425 y~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~-~~I~~~~ 502 (742)
+..+-..+...|+.++|...++...... .-+...|..+-..+...|+.++|...+++..+. .+ .+..+ ..-..+.
T Consensus 175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 175 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHH
T ss_conf 1036888888887755002111222222-222111013330122111101378887789988--4324999999999999
Q ss_pred HCHHHHHH
Q ss_conf 05488771
Q 004610 503 NSKEAARL 510 (742)
Q Consensus 503 ~~~~~~~a 510 (742)
..+...+|
T Consensus 252 ~~g~~~~A 259 (323)
T d1fcha_ 252 NLGAHREA 259 (323)
T ss_dssp HHTCHHHH
T ss_pred HCCCHHHH
T ss_conf 87899999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=8.5e-05 Score=44.87 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 4899998998205999999999998859999999999999999-998599779999999999889987851199999999
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (742)
Q Consensus 354 yn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~-~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~ 432 (742)
|.. .+....+.+..++|.++|+.....+ +.+...|...... +...|+.+.|..+|+.+... ..-+...|...+..+
T Consensus 137 w~~-~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~ 213 (308)
T d2onda1 137 YIQ-YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYL 213 (308)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 999-9999998278688999999999808-8867999999999987655778999999999986-100388999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 97599889999999999789-9899--999999999999839999999999999873
Q 004610 433 CNNGDVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g-v~pd--~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
.+.|+.+.|..+|++..... ..|+ ...|...+..-...|+.+.+..+.+++.+.
T Consensus 214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 986986899999999998278986899999999999999849999999999999987
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.07 E-value=0.00028 Score=41.56 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=86.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCC
Q ss_conf 9989982059999999999988599999999999999999985997799999999998899878511999999-999759
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNNG 436 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-a~~~~g 436 (742)
.....-+.|..+.|..+|+.+...........|...+..+.+.|+.+.|..+|+...+.+- .+...|..... -+...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCC
T ss_conf 9999986133899999999999871578699999999999982786889999999998088-867999999999987655
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 98899999999997899899999999999999839999999999999873
Q 004610 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
+.+.|..+|+.+... ..-+...|...++.+...|+.++|..+|++-...
T Consensus 184 ~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 184 DKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 778999999999986-1003889999999999869868999999999982
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0025 Score=35.56 Aligned_cols=277 Identities=10% Similarity=-0.020 Sum_probs=156.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCCH----HHHHHH
Q ss_conf 9987415932399999999752898888998859999999999991599789999999999929-99899----999999
Q 004610 158 QKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQ----YHYNVL 232 (742)
Q Consensus 158 ~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-i~pd~----~tyn~L 232 (742)
+.....++.++|.+.++.-.+.. |+.........++.+-..+...|++++|+..|.+..... -.++. ..+..+
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99998889999999999998548--6899679999999999999987999999999999999987501148999999888
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCC--C--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99987054587666888977779988542014501000258998--6--4321002255432210012689577999999
Q 004610 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--N--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (742)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~--~--~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~ 308 (742)
...+. ..|+...+...+... ..+....... . ...+..+-.. +...|+++.+...+.
T Consensus 98 ~~~~~----------~~~~~~~a~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~a~~~~~ 157 (366)
T d1hz4a_ 98 SEILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASAR 157 (366)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred HHHHH----------HHHHHHHHHHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHH------HHHHCCHHHHHHHHH
T ss_conf 78878----------888899999889999----9986750341256788899888789------998145666689999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---C-CCC
Q ss_conf 999849988822211067760112224799334421599868775489999899820599999999999885---9-999
Q 004610 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---D-EVP 384 (742)
Q Consensus 309 ~M~~~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~---~-g~~ 384 (742)
.............. ...+.. +...+...+....+...+.+... . +..
T Consensus 158 ~~~~~~~~~~~~~~----------------------------~~~~~~-~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 208 (366)
T d1hz4a_ 158 SGIEVLSSYQPQQQ----------------------------LQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYH 208 (366)
T ss_dssp HHHHHTTTSCGGGG----------------------------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHH----------------------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98887663002468----------------------------999988-8888876466788889999999999873115
Q ss_pred C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCCCC
Q ss_conf 9--9999999999999859977999999999988998---7851199999999975998899999999997----89989
Q 004610 385 M--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN---PRLRSYGPALSVFCNNGDVDKACSVEEHMLE----HGVYP 455 (742)
Q Consensus 385 p--d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~---Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~----~gv~p 455 (742)
+ ....+..+...+...|+.+.|...+......... .....+..+-..+...|+.++|...++.... .+..|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 288 (366)
T d1hz4a_ 209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 288 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 72699999999999986044898999999999762246667778899999999875879999999999998876426674
Q ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9-99999999999983999999999999987
Q 004610 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 456 d-~~ty~~Li~~~~~~G~~~~A~~ll~~M~~ 485 (742)
+ ...+..+-..+.+.|+.++|.+.+++-..
T Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7999999999999987899999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.0084 Score=32.23 Aligned_cols=56 Identities=5% Similarity=-0.048 Sum_probs=23.8
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHH
Q ss_conf 998998205999999999998859999999999999999998599------779999999999
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMK 414 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~------~~~A~~l~~~M~ 414 (742)
+-..+.+.+++++|.+.|+...... +-+...|+.+-..+.+.+. .++|+..+....
T Consensus 152 ~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al 213 (315)
T d2h6fa1 152 RQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 213 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8778888886678999999999879-7449999889999987456310235477679999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.011 Score=31.53 Aligned_cols=56 Identities=7% Similarity=-0.080 Sum_probs=26.1
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 899820599999999999885999999999999999999859977999999999988
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 416 (742)
..+.+.|+.++|++.++.+.... +-+...|..+...+...|+.++|...++...+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88885053788998875554321-004688998877888888667899999999987
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.016 Score=30.43 Aligned_cols=121 Identities=11% Similarity=0.050 Sum_probs=63.7
Q ss_pred HHHCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHH
Q ss_conf 820599999999999885----99999-9999999999999859977999999999988998785------119999999
Q 004610 363 AKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL------RSYGPALSV 431 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~----~g~~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~------~ty~~lI~a 431 (742)
...|++++|.+.+.+... .+..+ -..+|..+...+...|+.++|...+++.......... ..|..++..
T Consensus 129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (290)
T d1qqea_ 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (290)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 47878999988999999998733760333468899999999817399999999999986813324555699999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHH--CCCHHHHHHHHHHH
Q ss_conf 99759988999999999978998-99---9999999999998--39999999999999
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVY-PE---EPELEALLRVSVE--AGKGDRVYYLLHKL 483 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~-pd---~~ty~~Li~~~~~--~G~~~~A~~ll~~M 483 (742)
+...|+.+.|...++........ ++ ......|+.++-. .+.+++|...|+.+
T Consensus 209 ~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9984659999999999997597744439999999999999836899999999999887
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.55 E-value=0.017 Score=30.29 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=64.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCC
Q ss_conf 9989982059999999999988599999999999999999985997799999999998899878-511999999999759
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~a~~~~g 436 (742)
.=..+.+.|++++|+..|.+..... +-+...|+.+-.+|.+.|++++|...|+...+ +.|+ ...|..+-.++...|
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCC
T ss_conf 9999998699999999999999859-99899998178987410000012478888887--18873899999999999879
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98899999999997
Q 004610 437 DVDKACSVEEHMLE 450 (742)
Q Consensus 437 ~~~~A~~l~~~M~~ 450 (742)
+.++|...|+....
T Consensus 87 ~~~~A~~~~~~al~ 100 (201)
T d2c2la1 87 SYDEAIANLQRAYS 100 (201)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.021 Score=29.66 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=61.8
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 89982059999999999988599999999999999999985997799999999998899878511999999999759988
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~ 439 (742)
..|.+.|++++|...|.+..... +-+...|..+-..+...|++++|...|+...+.. .-+...|..+..++...|+.+
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999589999999866021100-0113332456788874054212888899999875-446687799999999949999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999999789
Q 004610 440 KACSVEEHMLEHG 452 (742)
Q Consensus 440 ~A~~l~~~M~~~g 452 (742)
+|...+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999899998729
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.029 Score=28.83 Aligned_cols=104 Identities=8% Similarity=-0.031 Sum_probs=61.9
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q ss_conf 9989982059999999999988599999999999999999985997---7999999999988998785-11999999999
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG---DMAFDMVKRMKSLGINPRL-RSYGPALSVFC 433 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~---~~A~~l~~~M~~~g~~Pd~-~ty~~lI~a~~ 433 (742)
+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|..++++.....-.|+. .+|..+=.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9887369999999999999988329-998999999999999851267899999999999860699319999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7599889999999999789989999999999
Q 004610 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (742)
+.|+.++|...|+...+. .|+......+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~ 112 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT--EPQNNQAKELE 112 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_conf 973169999999999976--90989999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.03 Score=28.70 Aligned_cols=98 Identities=12% Similarity=-0.053 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q ss_conf 99999999999999859977999999999988998785119999999997599889999999999789989-99999999
Q 004610 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEAL 463 (742)
Q Consensus 385 pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~L 463 (742)
|+...+.-.=..+.+.|++++|+..|.+..... +-+...|..+-.+|.+.|+.++|...++..... .| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_conf 649999999999998699999999999999859-998999981789874100000124788888871--88738999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999983999999999999987
Q 004610 464 LRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 464 i~~~~~~G~~~~A~~ll~~M~~ 485 (742)
-.++...|++++|...|++...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987999999999999987
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.96 E-value=0.015 Score=30.55 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=74.1
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 82059999999999988599999999999999999985997799999999998899878511999999999759988999
Q 004610 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (742)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~ 442 (742)
.+.|++++|++.+++-.+.. +-|...+..+...++..|++++|...++...+. .|+.......+.... .+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll------~a~ 77 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV------KAA 77 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH------HHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH------HHC
T ss_conf 88889999999999999978-999999999999999879999999999999986--997389999999999------834
Q ss_pred HHHHHHHHC----CC--CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999978----99--899-999999999999839999999999999873
Q 004610 443 SVEEHMLEH----GV--YPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 443 ~l~~~M~~~----gv--~pd-~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
...+++... .+ .|+ ...+......+...|+.++|..++.+..+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 663789987544420358647999999999999679989999999999833
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.05 Score=27.30 Aligned_cols=125 Identities=12% Similarity=0.021 Sum_probs=80.3
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99820599999999999885999999999999999999859977999999999988998785119999999997599889
Q 004610 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (742)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~ 440 (742)
.+...|+++.|++.|.++ ..|+..+|..+-..+...|+.++|.+.|++..+.. .-+...|..+=.++.+.|+.++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999877999999999864----89889999999999998589146787899999985-5234667889999985424999
Q ss_pred HHHHHHHHHHC------------CCC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999978------------998--99-999999999999839999999999999873599995
Q 004610 441 ACSVEEHMLEH------------GVY--PE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (742)
Q Consensus 441 A~~l~~~M~~~------------gv~--pd-~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~~~~~~p 492 (742)
|...|+..... |.. ++ ..++..+-..+.+.|++++|.+.+.+.... .+.+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCC
T ss_conf 9999999998672673678998665436305889999999999978999999999999836--9980
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.053 Score=27.16 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=52.3
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 89982059999999999988599999999999999999985997799999999998899878511999999999759988
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~ 439 (742)
..+.+.|++++|+.+|++..... +-+...|..+-.++.+.|+.++|...+....+.. ..+...|..+-.++...|+.+
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHH
T ss_conf 99999699999999999988619-9601343000110110000112100134677740-220267788999999812799
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999978
Q 004610 440 KACSVEEHMLEH 451 (742)
Q Consensus 440 ~A~~l~~~M~~~ 451 (742)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999984
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.054 Score=27.07 Aligned_cols=239 Identities=13% Similarity=-0.043 Sum_probs=138.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCC
Q ss_conf 999915997899999999999299989----9999999999870545876668889777799885420145010002589
Q 004610 199 DMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (742)
Q Consensus 199 ~~~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (742)
..+...|++++|+.+|++.....-..+ ...+..+-..+. ..|++++|...+... .++....+
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~----------~~g~~~~A~~~~~~a----~~~~~~~~ 85 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD 85 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----HHHHHHHC
T ss_conf 9999888999999999999854868996799999999999999----------879999999999999----99987501
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCH
Q ss_conf 98--6432100225543221001268957799999999984998-88222110677601122247993344215998687
Q 004610 275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (742)
Q Consensus 275 v~--~~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (742)
.. ....+..+... +...|++..+...+.+....... +.. ..+..
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~al~~~~~~~~~---------------------------~~~~~ 132 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLE---------------------------QLPMH 132 (366)
T ss_dssp CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCT---------------------------TSTHH
T ss_pred CHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCCC---------------------------HHHHH
T ss_conf 148999999888788------788888999998899999986750341---------------------------25678
Q ss_pred -HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCC---
Q ss_conf -754899998998205999999999998859----99999999999999999859977999999999988--99878---
Q 004610 352 -QDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPR--- 421 (742)
Q Consensus 352 -~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~----g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~--g~~Pd--- 421 (742)
..+.. +-..+...|+++.+...+...... +.......+..+...+...++...+...+.+.... .....
T Consensus 133 ~~~~~~-la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 211 (366)
T d1hz4a_ 133 EFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 211 (366)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 889988-8789998145666689999988876630024689999888888876466788889999999999873115726
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf -511999999999759988999999999978998---9999999999999983999999999999987
Q 004610 422 -LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY---PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 422 -~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~---pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~ 485 (742)
...+..+...+...|+.++|...++........ .....+..+-..+...|+.++|...+++...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999986044898999999999762246667778899999999875879999999999998
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.055 Score=27.04 Aligned_cols=122 Identities=7% Similarity=-0.051 Sum_probs=48.3
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99899820599999999999885999999999999999999859977999999999988998785119999999997599
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~ 437 (742)
+-..+...|+.++|.+.|+...... +.+......+.....+.+..+.+..+........ +....++ ++..+.....
T Consensus 111 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~ 186 (259)
T d1xnfa_ 111 RGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNIS 186 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHH-HHHHHHHHHH
T ss_conf 9999998766799999999998653-0007888999999988535878999998764031--4443455-7788888877
Q ss_pred HHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 889999999999789-----9899-999999999999839999999999999873
Q 004610 438 VDKACSVEEHMLEHG-----VYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 438 ~~~A~~l~~~M~~~g-----v~pd-~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
... .++...... ..|+ ..+|..|-..+...|+.++|...|++....
T Consensus 187 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 187 EQT---LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHH---HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 777---8999999999866408450999999999999878999999999999983
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.39 E-value=0.057 Score=26.95 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=57.2
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 89982059999999999988599999999999999999985997799999999998899878511999999999759988
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~ 439 (742)
..+.+.|++++|...|++..... +-+...|..+-..+.+.|++++|...|+...+.. .-+...|..+-..+...|+.+
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCHH
T ss_conf 99998760589999886101121-1110012335456410125877410000011111-100000378999999978999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 004610 440 KACSVEEHM 448 (742)
Q Consensus 440 ~A~~l~~~M 448 (742)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.068 Score=26.47 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=68.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999859977999999999988998785119999999997599889999999999789989999999999999983999
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~ 473 (742)
-..+.+.|++++|..+|.+..+. -+-+...|..+=.++...|+.++|...+....... ..+...|..+-..+...|+.
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCH
T ss_conf 99999969999999999998861-99601343000110110000112100134677740-22026778899999981279
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999873
Q 004610 474 DRVYYLLHKLRTS 486 (742)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (742)
++|...+++....
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999984
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.068 Score=26.46 Aligned_cols=91 Identities=10% Similarity=-0.039 Sum_probs=64.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999859977999999999988998785119999999997599889999999999789989999999999999983999
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~ 473 (742)
-..+.+.|++++|...|++..+.. .-+...|..+-..+...|++++|...|+...+.. .-+...|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 999999589999999866021100-0113332456788874054212888899999875-44668779999999994999
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999873
Q 004610 474 DRVYYLLHKLRTS 486 (742)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (742)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999989999872
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.089 Score=25.71 Aligned_cols=55 Identities=7% Similarity=-0.048 Sum_probs=23.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99899820599999999999885999999999999999999859977999999999
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 413 (742)
+=..|...|++++|.+.|++-.+.. +-+...|..+-.++.+.|+.++|...|+.-
T Consensus 42 lG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kA 96 (192)
T d1hh8a_ 42 IGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 96 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999998589146787899999985-523466788999998542499999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.097 Score=25.47 Aligned_cols=102 Identities=15% Similarity=0.028 Sum_probs=68.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf 9999999985997799999999998899878511999999999759---988999999999978998999-999999999
Q 004610 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYPEE-PELEALLRV 466 (742)
Q Consensus 391 ~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g---~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~ 466 (742)
..+++.+...+++++|.+.|+.....+ ..+..++..+-.++.+.+ +.++|..++++.....-.|+. ..|..|-.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 779887369999999999999988329-9989999999999998512678999999999998606993199999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99839999999999999873599995499
Q 004610 467 SVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (742)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (742)
|.+.|++++|...|++..+. .|.-..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~A 108 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQA 108 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--CCCCHHH
T ss_conf 99973169999999999976--9098999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=94.20 E-value=0.11 Score=25.02 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=59.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999859977999999999988998785119999999997599889999999999789989999999999999983999
Q 004610 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (742)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~ 473 (742)
-..+.+.|++++|...|++..... .-+...|..+-..+.+.|+.++|...++...+.. .-+...|..|-..+...|+.
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCH
T ss_conf 999998760589999886101121-1110012335456410125877410000011111-10000037899999997899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 004610 474 DRVYYLLHKL 483 (742)
Q Consensus 474 ~~A~~ll~~M 483 (742)
++|.+.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.13 Score=24.71 Aligned_cols=132 Identities=8% Similarity=-0.074 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH----CCCCC-CH
Q ss_conf 489999899820599999999999885----999-9999999999999998-5997799999999998----89987-85
Q 004610 354 ADEIRLSEDAKKYAFQRGFEIYEKMCL----DEV-PMNEASLTAVGRMAMS-MGDGDMAFDMVKRMKS----LGINP-RL 422 (742)
Q Consensus 354 yn~~LI~~~~k~g~~~~A~~lf~~M~~----~g~-~pd~~ty~~Li~~~~~-~g~~~~A~~l~~~M~~----~g~~P-d~ 422 (742)
|+. +-..|.+.|++++|.+.++.... .|. .....++..+...+-. .|++++|...+.+... .+-.+ -.
T Consensus 80 ~~~-~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 80 YVE-AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999-9999998088588899999766776532532058999999888676478789999889999999987337603334
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 119999999997599889999999999789989-----99-99999999999839999999999999873
Q 004610 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-----EE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 423 ~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~p-----d~-~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
.+|..+...+...|+.++|...+++........ .. ..|..+...+...|+.+.|...+++....
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 6889999999981739999999999998681332455569999999999999846599999999999975
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=93.45 E-value=0.11 Score=25.19 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=39.2
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9975998899999999997899899999999999999839999999999999873
Q 004610 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
..+.|++++|...+++.++.. .-+...+..|...++..|++++|...|+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 988889999999999999978-999999999999999879999999999999986
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.17 Score=23.97 Aligned_cols=125 Identities=9% Similarity=-0.088 Sum_probs=68.6
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99899820599999999999885999999999999999999859977999999999988998785119999999997599
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~ 437 (742)
+=..|.+.|++++|.+.|++..... +-+..+|+.+-..+.+.|++++|...|++..+.. .-+..+|..+-..+...|+
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9999998799999999999854349-9988999600427888777887523446899987-6111158889999998766
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 889999999999789989999999999999983999999999999987
Q 004610 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (742)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~ 485 (742)
.++|...++...+.. ..+......+..+..+.+..+.+..+......
T Consensus 121 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 799999999998653-00078889999999885358789999987640
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.18 E-value=0.17 Score=23.89 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999985997799999999998899878511999999999759988999999999
Q 004610 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (742)
Q Consensus 390 y~~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M 448 (742)
+..+...+.+.|++++|...++..... -.-+...|..++.++.+.|+..+|.+.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999998879905789999999984-9851999999999999855799999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.52 E-value=0.34 Score=21.99 Aligned_cols=202 Identities=6% Similarity=-0.056 Sum_probs=102.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 98741593239999999975289888899885999999999999159978999999999992999899999999999870
Q 004610 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (742)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (742)
.+.+.+....|..++..+ .-|..++..+.+.+++..|.++..... +..+|.-+..+|..
T Consensus 23 ~c~~~~lye~A~~lY~~~---------------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 81 (336)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHC---------------CCHHHHHHHHHHHCCHHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_conf 998787799999999867---------------899999999970315999999998808------89999999999972
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 54587666888977779988542014501000258998643210022554322100126895779999999998499888
Q 004610 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (742)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li~~~~~~~~~~~~g~~~~A~~l~~~M~~~G~~Pd 318 (742)
.....-+. +.. ..
T Consensus 82 ----------~~e~~la~-i~~------------------------------------~~-------------------- 94 (336)
T d1b89a_ 82 ----------GKEFRLAQ-MCG------------------------------------LH-------------------- 94 (336)
T ss_dssp ----------TTCHHHHH-HTT------------------------------------TT--------------------
T ss_pred ----------CCHHHHHH-HHH------------------------------------HH--------------------
T ss_conf ----------72878999-999------------------------------------87--------------------
Q ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 22211067760112224799334421599868775489999899820599999999999885999999999999999999
Q 004610 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (742)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 398 (742)
... +...... ++..|-..|..++...+++..... -..+...++-++..++
T Consensus 95 ~~~----------------------------~~d~l~~-~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 95 IVV----------------------------HADELEE-LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 144 (336)
T ss_dssp TTT----------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHC----------------------------CHHHHHH-HHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
T ss_conf 535----------------------------7887899-999998769859999999999757-7444679999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHC
Q ss_conf 859977999999999988998785119999999997599889999999999789--------989999999999999983
Q 004610 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEA 470 (742)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~g--------v~pd~~ty~~Li~~~~~~ 470 (742)
+.+. +. +.+.++... +.+...-++..|-..+.++++.-++..|.... -.++.......+..+.+.
T Consensus 145 k~~~-~k---l~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~ 217 (336)
T d1b89a_ 145 KFKP-QK---MREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 217 (336)
T ss_dssp TTCH-HH---HHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC
T ss_pred HHCH-HH---HHHHHHHCC---CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 8694-99---999998602---3599999999988748749999999855879999999997654456699999999724
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 999999999999987
Q 004610 471 GKGDRVYYLLHKLRT 485 (742)
Q Consensus 471 G~~~~A~~ll~~M~~ 485 (742)
.+.+...+++....+
T Consensus 218 ~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 218 ANVELYYRAIQFYLE 232 (336)
T ss_dssp SSTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 786999999999997
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.45 E-value=0.35 Score=21.95 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCCCCHH
Q ss_conf 9989982059999999999988599999999999999999985997799999999998-----89987851
Q 004610 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLR 423 (742)
Q Consensus 358 LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~ 423 (742)
+...+.+.|++++|...++.+.... +-++..|..++.++.+.|+..+|++.|+++.. .|+.|...
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9999988799057899999999849-851999999999999855799999999999999899848996899
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.45 Score=21.25 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=55.0
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHHHH
Q ss_conf 89982059999999999988599999999999999999985997799999999998899-878-----511999999999
Q 004610 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR-----LRSYGPALSVFC 433 (742)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~g~-~Pd-----~~ty~~lI~a~~ 433 (742)
..+.+.|++++|++.|.+..... +.+...|..+-.++...|++++|...++...+..- .+. ..+|..+=..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99998599999999999998849-64589998688999881860778999999998680127889889999999999999
Q ss_pred HCCCHHHHHHHHHHHHH
Q ss_conf 75998899999999997
Q 004610 434 NNGDVDKACSVEEHMLE 450 (742)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (742)
..+++++|...|+.-..
T Consensus 91 ~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHH
T ss_conf 93889999999999984
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.54 Score=20.74 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=19.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999859977999999999988998785119999999997599889999999999
Q 004610 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (742)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~ 449 (742)
+..+|.+.|++++|+..++...... +-+...|.-+-.++...|+.++|...|+...
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 123 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999886421101100000001002-2310346777999987222999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.72 E-value=0.62 Score=20.37 Aligned_cols=61 Identities=13% Similarity=-0.131 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999975998899999999997899899999999999999839999999999999873
Q 004610 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (742)
Q Consensus 425 y~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~~~~A~~ll~~M~~~ 486 (742)
|..+-.++.+.|+.++|...+....+.. .-+...|..+-.++...|++++|...|++..+.
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9989999986402101366655443100-022367776999999804799999999999985
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.37 E-value=0.64 Score=20.26 Aligned_cols=250 Identities=8% Similarity=-0.094 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCHH-HHHH---HHHHHHH-------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9323999999997528988889988599-9999---9999991-------599789999999999929998999999999
Q 004610 165 NDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRV---ELDMCSK-------RGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233 (742)
Q Consensus 165 ~~~~A~~v~~~m~~~g~~~~~~~~P~~~-tyn~---lI~~~~k-------~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL 233 (742)
...+|.++++...+. .|+-. .|+. ++..+.. .|.+++|+.+++...... +-+...+..+-
T Consensus 44 ~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~ 114 (334)
T d1dcea1 44 LDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 114 (334)
T ss_dssp CSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 669999999999998--------878589999999999997650034778778999999999999868-88679898864
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9987054587666888977779988542014501000258998643210022-554322100126895779999999998
Q 004610 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS-SPMIDKLESNSSYRFDDLDSTFNEKEN 312 (742)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~gv~~~vtyn~li-~~~~~~~~~~~~g~~~~A~~l~~~M~~ 312 (742)
.++... ..+..+++...+. +.... ...+...+...+ .. +-..+..+.|...++....
T Consensus 115 ~~~~~~--------~~~~~~~a~~~~~-------~al~~-~~~~~~~~~~~~~~~------~~~~~~~~~Al~~~~~~i~ 172 (334)
T d1dcea1 115 WLLSRL--------PEPNWARELELCA-------RFLEA-DERNFHCWDYRRFVA------AQAAVAPAEELAFTDSLIT 172 (334)
T ss_dssp HHHHTC--------SSCCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHHH------HHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHH--------CCCCHHHHHHHHH-------HHHHH-CCHHHHHHHHHHHHH------HHHCCCCHHHHHHHHHHHH
T ss_conf 899884--------3042899999999-------99855-921211110578999------8744552899999999887
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 49988822211067760112224799334421599868775489999899820599999999999885999999999999
Q 004610 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (742)
Q Consensus 313 ~G~~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~LI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty~~ 392 (742)
.. .. +...|+. +-..+.+.|+.++|...+...... .|+ ...
T Consensus 173 ~~----p~-----------------------------~~~a~~~-l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~ 213 (334)
T d1dcea1 173 RN----FS-----------------------------NYSSWHY-RSCLLPQLHPQPDSGPQGRLPENV--LLK---ELE 213 (334)
T ss_dssp TT----CC-----------------------------CHHHHHH-HHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHH
T ss_pred CC----CC-----------------------------CHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHH--HHH---HHH
T ss_conf 18----98-----------------------------7999999-999999826889899988776776--899---999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999985997799999999998899878511999999999759988999999999978998999999999999998399
Q 004610 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (742)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~a~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~G~ 472 (742)
+...+...+..+++...+....... .++...+..+...+...++.++|...+.+..... .-+...|..+-..+...|+
T Consensus 214 ~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 291 (334)
T d1dcea1 214 LVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLY 291 (334)
T ss_dssp HHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGG
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHCCC
T ss_conf 9999988244148899999887718-6605678879999999866999999999887629-1379999999999987899
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999873
Q 004610 473 GDRVYYLLHKLRTS 486 (742)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (742)
.++|...+++..+.
T Consensus 292 ~~eA~~~~~~ai~l 305 (334)
T d1dcea1 292 EKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
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