Citrus Sinensis ID: 004612

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740--
MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAGDKSGRPNKRRKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRWVILPF
ccccHHHHHHHHcccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHcccccHHHHHHHHHcccHHHHHcccccEEEEEEEEcccccEEEEEEEccccccHHHHHHHHccccccccccccccccccccccEEccccccEEEEEEEEcccccccccEEEEEEcHHHHHccccccEEEcEEEcccccccEEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEcccccccccccccccEEEEEEEcccccccccccccEEEEEccccccccccccccccccccEEEEEEEccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccc
ccccEEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEEcHHHHccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEcccccccccccccccEEEEEcccccccccccEEEEEHHHHHHHHcccccEEEEcccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEcccccccHEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccEEccHHHHHHcccccEEEEccccccccccccccEEEEEEEEEcccccccEEEEEEEEEEcccEEEcEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHccEEEEEcc
MNVNVKREILETClttaepkqndsvsnkLVPFielssssesnsgsdsddvnedaegagdksgrpnkrrkmpqdlevvlpvgfleplpaperlpaaagndkaVSVGLQSCKQFWkagdyegapsggwefstggmdhvrvhpkflhsnatSHKWALGAFAELLDNSldevcngatysnidmlinrkdgsrmlliedngggmnpdkmrhcmslgysakskaantigqygngfktstmrLGADVIVFScccgkdgksptrsiglLSYTFLrstgkedivvpmldyegsQQEWKKIIRSSLDDWNRNVETIvqwspfsseadLLHQFNLMKDHGTRIIIYNLweddqglleldfdsdkhdiqlrgvnrdeQNIKMaqhypnsrhflTYRHSLRSYASILYLrlppgfriiirgkdvehhnivndmmlskkvtyrpqpgasgiptdlhMAVDVTIGFVkdakhhidvqgfnvyhknrlikpfwrlwnasgsdgrgvIGVLEanfvepahdkqgfeRTTVLARLEARLIQMQKDYwnnncheigyaprrykkYIKDSYdreisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasdddMHVMVTARGANGSSQKILAAEKsfgkdglhrthpsaclvdsesqqdgasggssvrpfmpsqskgsevnypehflsdcslganlGQLKQENHELKKRWVILPF
MNVNVKREILETclttaepkqndsvsnKLVPFIELSsssesnsgsdsddvnedaegagdksgrpnkrrkmpqDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGkdgksptrsigLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFvepahdkqgferTTVLARLEARLIQMQkdywnnncheigyaprrykKYIKDSYDReisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasddDMHVMVTArgangssqkILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKqenhelkkrwvilpf
MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELssssesnsgsdsddvnedAEGAGDKSGRPNKRRKMPQDLEVVLPVGFleplpaperlpaaaGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRWVILPF
**************************************************************************EVVLPVGFLEP**************KAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIE*************CMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR**QNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD*******************************************************************************************************************************************************************FLSDCSLGANLG*********KKRWVI***
*****KR*ILETC*********************************************************************L****************************FWKAGDYE******************VHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLG**************GNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQ******************NSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPR**************************************************************************************************************************************************************************************************RWVILPF
MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIEL********************************RKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSY************************************************************KMKTPVK******************SDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLV*****************FMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRWVILPF
*NVNVKREILETCLTTA******SVSNKLVP***************************************************************************QSCKQFW*******APSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVN**********HYP*SRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAP**************************************H**Q**************************************************************************************************************************SEVN*PEHFLSDCSLGANLGQLKQENHELKKRWVILPF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAGDKSGRPNKRRKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRWVILPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query742 2.2.26 [Sep-21-2011]
Q8BMD7 928 MORC family CW-type zinc yes no 0.510 0.408 0.334 4e-52
Q14149 939 MORC family CW-type zinc yes no 0.475 0.375 0.349 2e-51
Q8TE76 937 MORC family CW-type zinc no no 0.501 0.397 0.329 4e-50
Q9WVL5 950 MORC family CW-type zinc no no 0.5 0.390 0.257 1e-33
Q9Y6X9 1032 MORC family CW-type zinc no no 0.345 0.248 0.323 1e-33
Q86VD1 984 MORC family CW-type zinc no no 0.502 0.379 0.276 4e-33
Q69ZX6 1030 MORC family CW-type zinc no no 0.345 0.248 0.319 7e-33
Q8C5W4 1022 MORC family CW-type zinc no no 0.346 0.251 0.311 2e-32
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function desciption
 Score =  206 bits (525), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/419 (33%), Positives = 220/419 (52%), Gaps = 40/419 (9%)

Query: 138 VHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGG 197
           + P++L SN++SH     A AELLDN++D   +  T   ID+   +K     L   D+G 
Sbjct: 35  MSPRYLQSNSSSHTRPFSAIAELLDNAVDPDVSARTVF-IDVEEVKKKPC--LTFTDDGC 91

Query: 198 GMNPDKMRHCMSLGYSAK--SKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPT 255
           GM P K+   +S G++ K   K+   IG +GNGFK+ +MRLG D +VF+    K+G   T
Sbjct: 92  GMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALVFT----KNGN--T 145

Query: 256 RSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSE 315
            ++GLLS T+L     + ++VP++ +  SQQ  K I+    +D   ++E I+ +S F+ E
Sbjct: 146 LAVGLLSQTYLECIQAQAVIVPIVPF--SQQNKKMIV---TEDSLPSLEAILNYSIFNCE 200

Query: 316 ADLLHQFNLMK-DHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK-MAQH 373
            DLL QF+ +    GTR++I+N+  +  G  ELDFD+D++DI +   + +E+ I  +   
Sbjct: 201 KDLLSQFDAIPGKKGTRVLIWNIRRNKDGKSELDFDTDQYDILVSDFDAEEKEIGGVTSE 260

Query: 374 YPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPG 433
            P + +      SLR++ SILY++  P  +I +R K V    I   +   +   Y+P   
Sbjct: 261 LPETEY------SLRAFCSILYMK--PRMKIFLRQKKVTTQMIAKSLANVEYDIYKP--- 309

Query: 434 ASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRL---WNASGSDGRGV 490
                T  +  V +T GF    K+H    G  +YH NRLIK F +       +  +G GV
Sbjct: 310 -----TSTNKQVRITFGF--SCKYHNQF-GVMMYHNNRLIKAFEKAGCQLKPTCGEGVGV 361

Query: 491 IGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 549
           IGV+E NF++PA++KQ FE T         L +    YW     +  + P    + I D
Sbjct: 362 IGVIECNFLKPAYNKQDFEYTKEYRLTINALARKLNAYWKEKISQENFEPLPTSRRIPD 420

Mus musculus (taxid: 10090)
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function description
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query742
255540135816 zinc finger protein, putative [Ricinus c 0.947 0.861 0.653 0.0
297734460830 unnamed protein product [Vitis vinifera] 0.943 0.843 0.620 0.0
224119746 862 predicted protein [Populus trichocarpa] 0.884 0.761 0.650 0.0
356527801820 PREDICTED: uncharacterized protein LOC10 0.929 0.841 0.602 0.0
359491569 2234 PREDICTED: uncharacterized protein LOC10 0.776 0.257 0.676 0.0
449440961824 PREDICTED: uncharacterized protein LOC10 0.756 0.680 0.696 0.0
449501464794 PREDICTED: uncharacterized LOC101222073 0.756 0.706 0.696 0.0
356511518809 PREDICTED: uncharacterized protein LOC10 0.784 0.719 0.671 0.0
297803624709 hypothetical protein ARALYDRAFT_492340 [ 0.792 0.829 0.646 0.0
297792383804 hypothetical protein ARALYDRAFT_495140 [ 0.764 0.705 0.663 0.0
>gi|255540135|ref|XP_002511132.1| zinc finger protein, putative [Ricinus communis] gi|223550247|gb|EEF51734.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/753 (65%), Positives = 548/753 (72%), Gaps = 50/753 (6%)

Query: 1   MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAG-- 58
           M++ VKREI+ET  T    + NDSV       IELSSSS S+S S SD  +E   GA   
Sbjct: 1   MDIPVKREIVETFGTADSNRGNDSVLPGPPVLIELSSSSSSSSSSSSDSDSESDNGARFF 60

Query: 59  -DKSGRPNKRRKMPQDLEVVLPVGFLEPL---PAPERLPAAAGNDKAVSVGLQSCKQFWK 114
            +  G   K+RK+ ++L VVLPVGFL PL   PA   L    GND    +  QSCKQFWK
Sbjct: 61  PNGEGISKKKRKL-EELGVVLPVGFLAPLNQVPAEAMLTTVQGNDNVCLID-QSCKQFWK 118

Query: 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATY 174
           AGDYEGAP G W+ STGGMDHVRVHPKFLHSNATSHKWALGAFAELLDN+LDEVC GATY
Sbjct: 119 AGDYEGAPCGDWDLSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEVCYGATY 178

Query: 175 SNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM 234
            NIDML N KDGSRMLLIEDNGGGM+PDKMR CMSLGYSAKSK ANTIGQYGNGFKTSTM
Sbjct: 179 VNIDMLANWKDGSRMLLIEDNGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTM 238

Query: 235 RLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRS 294
           RLGADVIVFS C GKDGKSPT+SIGLLSYTFLRSTGKEDIVVPMLDYE   QEW K+IRS
Sbjct: 239 RLGADVIVFSRCPGKDGKSPTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGQEWNKMIRS 298

Query: 295 SLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKH 354
           S  DWNRNVETIVQWSPFSSEADLL QFNLM DHGTRI+IYNLWEDD+G LELDFD+D H
Sbjct: 299 SSGDWNRNVETIVQWSPFSSEADLLRQFNLMSDHGTRIVIYNLWEDDEGSLELDFDTDPH 358

Query: 355 DIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHH 414
           DIQLRGVNRDE+NI+MA+ +PNSRHFLTYRHSLRSYASILYLRLPP FRII+RGKDVEHH
Sbjct: 359 DIQLRGVNRDEKNIQMAKEFPNSRHFLTYRHSLRSYASILYLRLPPCFRIILRGKDVEHH 418

Query: 415 NIVNDMMLSKKVTYRPQPGASGIPTDL---HMAVDVTIGFVKDAKHHIDVQGFNVYHKNR 471
           NIVNDMMLS+++TYRPQ  A G+  D    HMA  VTIGFVKDAKHHIDVQGFNVYHKNR
Sbjct: 419 NIVNDMMLSQEITYRPQ-SADGVAKDFNLNHMAAIVTIGFVKDAKHHIDVQGFNVYHKNR 477

Query: 472 LIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNN 531
           LIKPFWRLWNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARL+QMQK YW+ 
Sbjct: 478 LIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKTYWST 537

Query: 532 NCHEIGYAPRRYKKYIKDSYD-------REISSK-KSYPSRHKITDSSHSDKHQLHSNQR 583
           NCH+IGYAPRR K++I +S D        ++SS+ K Y +      SS SDK   H+NQ 
Sbjct: 538 NCHKIGYAPRRNKRFINESTDGGSSPDYSQVSSQSKKYSALRGKGLSSLSDKFYSHANQN 597

Query: 584 WEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHV 643
             GK S    +  N     GH SS G    KT            P SPS  D  D+D H+
Sbjct: 598 G-GKRSDTFAKNGNPAYANGHVSSNGSDGTKTSTGSGRKTHSKAPSSPSLHDVDDNDAHI 656

Query: 644 MVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSK 703
            +  R                 +DGLH    S+ L D+  Q               SQSK
Sbjct: 657 ALPTR-----------------QDGLHMVRLSSPLEDTTQQ-----------AVTRSQSK 688

Query: 704 GSEVNYPEHFLSDCSLGANLGQLKQENHELKKR 736
             +V+  +H L +  L  N+ +LKQEN EL++R
Sbjct: 689 AGKVDNSQHVLPESDL-CNINELKQENQELRER 720

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734460|emb|CBI15707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119746|ref|XP_002318152.1| predicted protein [Populus trichocarpa] gi|222858825|gb|EEE96372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527801|ref|XP_003532495.1| PREDICTED: uncharacterized protein LOC100816702 [Glycine max] Back     alignment and taxonomy information
>gi|359491569|ref|XP_002280533.2| PREDICTED: uncharacterized protein LOC100266246 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440961|ref|XP_004138252.1| PREDICTED: uncharacterized protein LOC101222073 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449501464|ref|XP_004161374.1| PREDICTED: uncharacterized LOC101222073 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511518|ref|XP_003524472.1| PREDICTED: uncharacterized protein LOC100786679 [Glycine max] Back     alignment and taxonomy information
>gi|297803624|ref|XP_002869696.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata] gi|297315532|gb|EFH45955.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297792383|ref|XP_002864076.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata] gi|297309911|gb|EFH40335.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query742
TAIR|locus:2117358707 AT4G24970 [Arabidopsis thalian 0.652 0.684 0.746 2.3e-205
TAIR|locus:2163320819 AT5G50780 [Arabidopsis thalian 0.611 0.554 0.742 1.2e-199
TAIR|locus:2179837708 AT5G13130 [Arabidopsis thalian 0.590 0.618 0.644 8.6e-159
TAIR|locus:2122254626 CRH1 "CRT1 Homologue 1" [Arabi 0.566 0.670 0.511 5.4e-115
TAIR|locus:2122264635 CRT1 "compromised recognition 0.567 0.662 0.517 2.8e-114
TAIR|locus:2011226663 DMS11 "DEFECTIVE IN MERISTEM S 0.556 0.622 0.516 5.5e-109
TAIR|locus:2122244486 AT4G36270 "AT4G36270" [Arabido 0.433 0.662 0.446 7.2e-68
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.501 0.344 0.353 9e-53
ZFIN|ZDB-GENE-060929-544422 zgc:152774 "zgc:152774" [Danio 0.526 0.926 0.334 6.5e-51
ZFIN|ZDB-GENE-040801-98 763 morc3b "MORC family CW-type zi 0.304 0.296 0.361 6.7e-43
TAIR|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1955 (693.3 bits), Expect = 2.3e-205, Sum P(2) = 2.3e-205
 Identities = 368/493 (74%), Positives = 415/493 (84%)

Query:   109 CKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEV 168
             CKQFWKAGDYEGA    W+ S+GG DHVRVHPKFLHSNATSHKWALGAFAELLDN+LDEV
Sbjct:   135 CKQFWKAGDYEGAAGDNWDLSSGGFDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEV 194

Query:   169 CNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228
              +GATY  +DML N K G+RMLLIEDNGGGM+P+KMR CMSLGYSAKSK ANTIGQYGNG
Sbjct:   195 ASGATYVKVDMLENNKGGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKLANTIGQYGNG 254

Query:   229 FKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEW 288
             FKTSTMRLGADVIVFS C GKDGKS T+SIGLLSYTFLRSTGKEDIVVPMLDYE    EW
Sbjct:   255 FKTSTMRLGADVIVFSRCPGKDGKSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRDPEW 314

Query:   289 KKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELD 348
              KIIRSS  DW++NVETI+QWSPFSSE DLLHQF+LMKD GTRIIIYNLWEDDQG+LELD
Sbjct:   315 SKIIRSSTRDWDKNVETIIQWSPFSSEEDLLHQFDLMKDRGTRIIIYNLWEDDQGMLELD 374

Query:   349 FDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRG 408
             FD+D +DIQLRGVNR+E+NIKMA  +PNSRHFLTY+HSLRSY SILYLR+PPGFRII+RG
Sbjct:   375 FDADPYDIQLRGVNREERNIKMASQFPNSRHFLTYKHSLRSYVSILYLRIPPGFRIILRG 434

Query:   409 KDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYH 468
              DVEHH++VNDMM ++++TYRPQ  + G+ T+  M+  V IGFVKDAKHH+DVQGFNVYH
Sbjct:   435 IDVEHHSVVNDMMQTEQITYRPQSESYGVVTN--MSAIVIIGFVKDAKHHVDVQGFNVYH 492

Query:   469 KNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDY 528
             KNRLIKPFWR+WNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLE+RL+QMQK Y
Sbjct:   493 KNRLIKPFWRIWNATGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLESRLVQMQKTY 552

Query:   529 WNNNCHEIGYAPRRYKK--YIKDSYDREISSKKSYPSRHKI----TDSSHSDKHQLHSNQ 582
             W+ NCH+IGYAPRR +K  Y  D+ D    + +  PS  K     +D  +S  +  H+  
Sbjct:   553 WSTNCHKIGYAPRRREKSAYGYDNRDSSPENDREGPSSIKTPTPASDKFYSSSYPNHNGD 612

Query:   583 RW-EGKDSKRLPE 594
                 GKD  RL E
Sbjct:   613 NGVSGKDGARLQE 625
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IDA
TAIR|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-544 zgc:152774 "zgc:152774" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query742
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 5e-17
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 4e-05
COG3290537 COG3290, CitA, Signal transduction histidine kinas 2e-04
COG0323638 COG0323, MutL, DNA mismatch repair enzyme (predict 3e-04
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 0.004
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 13/128 (10%)

Query: 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSA 214
            A AEL+DNS+D     A  +N+ + I+   G   + IEDNGGGM+ +++R+ + LG S+
Sbjct: 5   DAIAELIDNSID-----ADATNVKISIDPDRGEDGISIEDNGGGMSYEELRNALKLGRSS 59

Query: 215 KSKA--ANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKE 272
           K     + T+G+ G G K +++ LG  + V S    K+G+S T ++       +   G+ 
Sbjct: 60  KEGERDSTTLGRKGIGMKLASLSLGRKLTVTS---KKEGESSTLTL---DLDDIDKEGEW 113

Query: 273 DIVVPMLD 280
           D+      
Sbjct: 114 DLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 742
KOG1845775 consensus MORC family ATPases [Cell cycle control, 100.0
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.85
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.74
PRK05218613 heat shock protein 90; Provisional 99.74
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.69
PRK14083601 HSP90 family protein; Provisional 99.62
PTZ00130 814 heat shock protein 90; Provisional 99.54
PTZ00272701 heat shock protein 83 kDa (Hsp83); Provisional 99.5
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.33
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.29
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.27
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 99.24
KOG0020785 consensus Endoplasmic reticulum glucose-regulated 99.18
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 98.94
KOG1979694 consensus DNA mismatch repair protein - MLH1 famil 98.87
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 98.4
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.32
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.29
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.29
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.28
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.26
PRK05644638 gyrB DNA gyrase subunit B; Validated 98.15
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 98.02
KOG1978672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.0
PRK14867659 DNA topoisomerase VI subunit B; Provisional 97.99
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 97.97
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 97.87
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.72
COG3290537 CitA Signal transduction histidine kinase regulati 97.58
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.52
PLN03237 1465 DNA topoisomerase 2; Provisional 97.44
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.38
PRK10604433 sensor protein RstB; Provisional 97.26
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.24
PRK09470461 cpxA two-component sensor protein; Provisional 97.19
PRK11006430 phoR phosphate regulon sensor protein; Provisional 97.15
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 97.14
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.11
PRK10364457 sensor protein ZraS; Provisional 97.08
PRK09303380 adaptive-response sensory kinase; Validated 97.04
PRK10549466 signal transduction histidine-protein kinase BaeS; 97.02
COG0642336 BaeS Signal transduction histidine kinase [Signal 97.02
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 96.96
PRK10755356 sensor protein BasS/PmrB; Provisional 96.95
PRK11100475 sensory histidine kinase CreC; Provisional 96.9
PRK09467435 envZ osmolarity sensor protein; Provisional 96.85
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 96.71
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 96.71
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 96.6
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 96.49
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.47
PRK13837828 two-component VirA-like sensor kinase; Provisional 96.42
PRK10815485 sensor protein PhoQ; Provisional 96.37
PRK11086542 sensory histidine kinase DcuS; Provisional 96.36
PTZ00109 903 DNA gyrase subunit b; Provisional 96.33
PRK09835482 sensor kinase CusS; Provisional 96.28
PRK11360607 sensory histidine kinase AtoS; Provisional 96.23
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 96.21
PRK10337449 sensor protein QseC; Provisional 96.1
PRK15347921 two component system sensor kinase SsrA; Provision 95.99
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 95.96
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 95.94
PRK11091779 aerobic respiration control sensor protein ArcB; P 95.86
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 95.81
COG4191603 Signal transduction histidine kinase regulating C4 95.77
PRK10841924 hybrid sensory kinase in two-component regulatory 95.63
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 95.62
PRK10618894 phosphotransfer intermediate protein in two-compon 95.59
PLN03128 1135 DNA topoisomerase 2; Provisional 95.54
PRK10490895 sensor protein KdpD; Provisional 95.52
PRK10547670 chemotaxis protein CheA; Provisional 95.18
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 95.07
PRK04069161 serine-protein kinase RsbW; Provisional 95.06
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 95.02
PRK099591197 hybrid sensory histidine kinase in two-component r 95.01
COG4585365 Signal transduction histidine kinase [Signal trans 94.79
PRK13557540 histidine kinase; Provisional 94.68
PRK11644495 sensory histidine kinase UhpB; Provisional 94.2
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 93.88
PRK03660146 anti-sigma F factor; Provisional 93.71
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 93.64
COG3850574 NarQ Signal transduction histidine kinase, nitrate 92.85
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 91.53
COG2972456 Predicted signal transduction protein with a C-ter 91.31
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 90.91
PRK13560807 hypothetical protein; Provisional 90.03
COG4192673 Signal transduction histidine kinase regulating ph 89.76
COG0643716 CheA Chemotaxis protein histidine kinase and relat 89.56
COG5000712 NtrY Signal transduction histidine kinase involved 88.86
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 87.52
COG3920221 Signal transduction histidine kinase [Signal trans 86.62
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 84.71
PRK13559361 hypothetical protein; Provisional 81.67
COG5002459 VicK Signal transduction histidine kinase [Signal 80.04
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-59  Score=535.24  Aligned_cols=446  Identities=51%  Similarity=0.781  Sum_probs=393.2

Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhcccCCCCCCCCCccccCCCcceeeecchhhhcccccccCHH
Q 004612           75 EVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWAL  154 (742)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fwkag~y~~~~~~~~~~~~~~l~~~~vhp~fLhSnsTsh~w~f  154 (742)
                      +|++|---+.|-++++.++    .. ++++..-.||||||||+|..++........++.+|+++||+|||+|+|+|+|.+
T Consensus        74 ~vvvP~~t~~~~~~~~~~~----k~-~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~  148 (775)
T KOG1845|consen   74 AVVVPCPTFNPRTREIVTE----KF-AFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAK  148 (775)
T ss_pred             cceeccccccccccccccc----cc-ccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccccc
Confidence            3456655555544444331    22 446677899999999999999999888889999999999999999999999999


Q ss_pred             HHHHHhhccchhhhhcCCceeEEEEEEccCCC-ceeEEEE-----EcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004612          155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDG-SRMLLIE-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG  228 (742)
Q Consensus       155 ~AIAELVDNSiDA~~agAt~V~IdI~~~~~~g-~~~L~I~-----DNG~GM~~eeL~~~l~~G~SsK~r~~~~IGrfGvG  228 (742)
                      +|++||||||+|.+.++|+.+.|+.+..+.+. ...++|+     |||+||.++-+..||.+|++.|......+|+||+|
T Consensus       149 ~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~g  228 (775)
T KOG1845|consen  149 GAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNG  228 (775)
T ss_pred             ChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccc
Confidence            99999999999999999999998887655443 5667766     77999999999999999999987667899999999


Q ss_pred             ccccccccCCeEEEEeeecCCCCCCCceeeeeechhhhccCCCCceEEec----cccccchhHHHHHhhccchhhhhhhH
Q 004612          229 FKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNVE  304 (742)
Q Consensus       229 fKsAsmrLG~~V~V~SK~~g~~g~~~t~SiglLS~tfl~~~g~ddIvVPm----~dye~~~~~w~~~i~~~~~dw~~nL~  304 (742)
                      ||++.|++|.+++|++|..+..|.+.++++|+|||+||+.++.++++|||    .+|+...+.|..+++.+..+|..++.
T Consensus       229 fktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~  308 (775)
T KOG1845|consen  229 FKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLE  308 (775)
T ss_pred             cccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeee
Confidence            99999999999999999877678889999999999999999999999999    99999889999988888999999998


Q ss_pred             h-----hhhcCCCCChHHHHHH---------------hhccCCCeeEEEEecc--ccccCCceeecCCCCcccccccCCc
Q 004612          305 T-----IVQWSPFSSEADLLHQ---------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGVN  362 (742)
Q Consensus       305 ~-----IlkySPf~sE~eLl~q---------------f~~Ig~~GT~III~NL--we~~dG~~ELDFdtD~~DI~i~g~~  362 (742)
                      +     +++|+||.++.+++.|               ++.+..+||.||+||+  |+++.|.+|+||+.+.++|..    
T Consensus       309 i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~----  384 (775)
T KOG1845|consen  309 IEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW----  384 (775)
T ss_pred             eHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc----
Confidence            8     9999999999999988               8888999999999999  999999999999999888841    


Q ss_pred             chhhhhhhhccCCCcchhhhhHHHHHHHHHHHhhcCCCceEEEEcCeeeccccccccccccccccccCCCCCCCCCCCcc
Q 004612          363 RDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLH  442 (742)
Q Consensus       363 ~d~k~~q~ak~~p~~~~~~~~~~SLRaYLSILYLRfpprfkIiLnGqkVep~~i~~Dl~~~e~~~YrPq~~~~~LP~~~~  442 (742)
                                         .+.++++.|.++||.++..+|++++.|+++.|+.+..+.+..+...|+|+......+ ...
T Consensus       385 -------------------~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~~  444 (775)
T KOG1845|consen  385 -------------------TYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QRL  444 (775)
T ss_pred             -------------------cchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-chh
Confidence                               345788999999999999999999999999999999998888888899985432211 112


Q ss_pred             ceeeEEeecccCcccccccCceEEEecCcccc----hhhcccccCCCCCcceeeeecccccCCCCcccchhhHHHHHHHH
Q 004612          443 MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLE  518 (742)
Q Consensus       443 ~~~~itiGfl~~~~~~~~~qGfyVYhnnRLI~----~f~~Vw~~~~s~GrGVIGVleanflePthnKQdFe~t~~l~rL~  518 (742)
                      +......||.+..++++++++|+|||++|||.    +||+.|+..++.++++++++.+||.+|+|++|+|+.+...++.+
T Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~e  524 (775)
T KOG1845|consen  445 IKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSE  524 (775)
T ss_pred             hcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccch
Confidence            34445788999888999999999999999999    99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccccccccccccccc
Q 004612          519 ARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD  549 (742)
Q Consensus       519 ~~L~~~ld~YW~~~~~~~Gy~~~~~~~~~~~  549 (742)
                      ..+.++++.||...|++|+|.........+.
T Consensus       525 s~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~  555 (775)
T KOG1845|consen  525 SRDKQSLNTYEEKKCLRIDEAGRQLQKERES  555 (775)
T ss_pred             hhhhhcccccccccccccCccchhhhhhhcc
Confidence            9999999999999999999999876665544

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query742
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 1e-04
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 72/455 (15%), Positives = 141/455 (30%), Gaps = 140/455 (30%)

Query: 223 GQYGNGFKTSTMRLGADV----------------IVFSCCCGKDGKSPTRSIGLLSYTFL 266
           G  G+G KT    +  DV                +    C      SP   + +L     
Sbjct: 157 GVLGSG-KTW---VALDVCLSYKVQCKMDFKIFWLNLKNCN-----SPETVLEMLQKLLY 207

Query: 267 R-----STGKEDIVVPMLDYEGSQQEWKKIIRSS--------LDD-WNRNVETIVQWSPF 312
           +     ++  +      L     Q E +++++S         L +  N        W+ F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-----WNAF 262

Query: 313 ------------SSEADLL---HQFNLMKDHGTRIIIYNLWEDD-QGLLELDFDSDKHDI 356
                           D L      ++  DH +      L  D+ + LL    D    D+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM----TLTPDEVKSLLLKYLDCRPQDL 318

Query: 357 --QLRGVN-----------RDEQNIKMAQHYPNSRHFLTYRHSLRSYASI---------- 393
             ++   N           RD         + N +H    + +    +S+          
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 394 LYLRL---PPGFRI------II--RGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLH 442
           ++ RL   PP   I      +I       +   +VN +     V  +P+     IP  ++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIY 432

Query: 443 MAVDVTIGFVKDAKHH---ID-VQGFNVYHKNRLIKPFWRLWNASGSDG--RGVIGV-LE 495
           +  ++ +    +   H   +D       +  + LI P+         D      IG  L+
Sbjct: 433 L--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL--------DQYFYSHIGHHLK 482

Query: 496 ANFVEPAHDKQGFERTTV-LARLEARLIQMQKDYWN------NNCHEIGYAPRRYKKYIK 548
              +E       F    +    LE ++       WN      N   ++    + YK YI 
Sbjct: 483 N--IEHPERMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQL----KFYKPYIC 535

Query: 549 DS---YDREISSKKSYPSRH--KITDSSHSDKHQL 578
           D+   Y+R +++   +  +    +  S ++D  ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 742
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 4e-04
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 5e-04
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 0.004
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 156 AFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAK 215
              EL++NSLD    GAT   ID+ I  + G++++ I DNG G+  D++   ++   ++K
Sbjct: 28  VVKELVENSLDA---GAT--RIDIDI-ERGGAKLIRIRDNGCGIKKDELALALARHATSK 81

Query: 216 SKAANTIGQY----GNGFKTSTMRLGADVIVFSCCCGKDG 251
             + + +         G   +++   + + + S    +  
Sbjct: 82  IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQE 121
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query742
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.85
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.84
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.83
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.62
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.54
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.42
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 98.67
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 98.49
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 98.18
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 98.01
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.01
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 97.97
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 97.94
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 97.93
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.87
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.6
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.53
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.29
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 97.02
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 96.97
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-22  Score=150.65  Aligned_cols=114  Identities=22%  Similarity=0.356  Sum_probs=95.1

Q ss_pred             CCCCCCCCCCEEEECCHHHHCCCCCCCCHHHHHHHHHCCCHHHHHC-------------CCCEEEEEEEECCCCCCEEEE
Q ss_conf             8644678741133160222100135518999998853020134416-------------994139999973689940699
Q 004612          125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL  191 (742)
Q Consensus       125 ~~~~~~~~l~~~~vhp~fLhSnsTsh~~~fsAIAELIDNSiDA~~~-------------~At~V~IdI~~~~~~g~~~L~  191 (742)
                      .||+++.+|.++.+|..|      ++.++|  |+|||+||.||+..             ......|.|..++  +..+|.
T Consensus         5 ~Fq~e~~~ll~ll~~slY------s~~~if--lRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~--~~~~l~   74 (208)
T d1uyla_           5 AFQAEIAQLMSLIINTFY------SNKEIF--LRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLT   74 (208)
T ss_dssp             ECCHHHHHHHHHHHHSCC------SCTTHH--HHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEE
T ss_pred             EEHHHHHHHHHHHHHHHC------CCCHHH--HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEECC--CCCEEE
T ss_conf             516879899999998605------784276--8989852999999888886279202147864222775237--764899


Q ss_pred             EEECCCCCCHHHHHHHHH-CCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             998599999987976320-2534344---------687666831343432110268949999524489
Q 004612          192 IEDNGGGMNPDKMRHCMS-LGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK  249 (742)
Q Consensus       192 I~DNG~GMs~eeL~~~l~-~G~SsK~---------~~~~~IGrfGiGlKsAsmsLG~~vtV~SK~~g~  249 (742)
                      |.|||.||+.+++.+.+. +|.|.+.         .+...|||||+||++++| ++++|.|.||..+.
T Consensus        75 I~DnGiGMt~~el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~  141 (208)
T d1uyla_          75 IVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD  141 (208)
T ss_dssp             EEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS
T ss_pred             EECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEE-CCCCEEEEEECCCC
T ss_conf             97289545499998651211323348899864401210022020442577652-26814899844775
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure