Citrus Sinensis ID: 004614

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740--
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLLEPLHMLA
cccEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccc
ccEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEccccEEEccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHEEEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHcc
MSVVYELGDASMKQNLVDALVTTLtgsgkrkrtvklaedsevfqegaigeglgggklSTYKELCNLAnemgqpdlIYKFMDLANYQVSlnskrgaafgFSKIAKQAGDALKPHLRLLIPKLvrfqydpdknvQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISiakgspmwdtLDLCInvvdtesldqlVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAAlhiddknsqISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIassswsskRKSAKAICKLGEILGESLSNYHHVLLESIMkevpgrlwegKDALLYAIGSIStschkdisaedpttpfAIVDMVSSACRKKIKKYREAAFSCLEQVIKAfrdpkffniIFPLLFEMCgstalnksgqvplpsdaskeesadesvsapldKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTIslspgfpwtgfrKRWTTLLEPLHMLA
MSVVYELGDASMKQNLVDALVTtltgsgkrkrtvklaedsevfqegaigeglgggKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLAdiiqgrkfdqvgKHLRRIWTAAFRAMDDIKETVrtagdklcrsvtsltirlcDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWeentsgdrVTLQLYLGEIVSLICEGIassswsskrKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISlspgfpwtgfrKRWTTLLEPLHMLA
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEgaigeglgggKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPvvkeeksaaakrafasacasvLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIassswsskrksakaICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPsdaskeesadesvsaPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLLEPLHMLA
**************NLVDALVTTLT***************EVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA**************************LDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLLEPL****
MSVVYE*GDASMKQNLVDALV********************************GGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV*****S***QSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSG*GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLF*******************************APLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLLEPLHMLA
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE***********SACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS**********KAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKS********************APLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLLEPLHMLA
MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGST***********************VSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLLEPLHMLA
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MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTGFRKRWTTLLEPLHMLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query742 2.2.26 [Sep-21-2011]
Q5VYK31845 Proteasome-associated pro yes no 0.863 0.347 0.345 1e-118
Q6PDI51840 Proteasome-associated pro yes no 0.863 0.348 0.345 1e-117
Q5R6J01810 Proteasome-associated pro yes no 0.863 0.354 0.342 1e-114
Q9V677 1890 Proteasome-associated pro yes no 0.890 0.349 0.281 8e-81
P387371868 Proteasome component ECM2 yes no 0.896 0.355 0.279 2e-76
Q9P7H81679 Proteasome component ecm2 yes no 0.762 0.337 0.286 2e-57
>sp|Q5VYK3|ECM29_HUMAN Proteasome-associated protein ECM29 homolog OS=Homo sapiens GN=ECM29 PE=1 SV=2 Back     alignment and function desciption
 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/662 (34%), Positives = 391/662 (59%), Gaps = 21/662 (3%)

Query: 1    MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTY 60
            + +VYELG+   +Q LV  LV TL  +GKR +  +++ ++ VFQ GA+G+   G  LSTY
Sbjct: 1009 LGLVYELGNEQDQQELVSTLVETLM-TGKRVKH-EVSGETVVFQGGALGKTPDGQGLSTY 1066

Query: 61   KELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPK 120
            KELC+LA+++ QPDL+YKFM+LAN+    NS++GAAFGF+ IA +AG+ L P L  L+P+
Sbjct: 1067 KELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPR 1126

Query: 121  LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180
            L R+Q+DP+  ++ AM  IW +LV D K  +D++L  I  DL+    S +WR RE+SCL+
Sbjct: 1127 LYRYQFDPNLGIRQAMTSIWNALVTD-KSMVDKYLKEILQDLVKNLTSNMWRVRESSCLA 1185

Query: 181  LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240
            L D+++GR  D +   L  IW   FR  DDIKE+VR A +   ++++ + +++CD    +
Sbjct: 1186 LNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDP--AK 1243

Query: 241  ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300
             +  ++++  +LP LL +G++S V  +   SI  ++K+ K AG  ++PH   L+  +LES
Sbjct: 1244 GAAGQRTIAALLPCLLDKGMMSTVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLES 1303

Query: 301  LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVP 360
            LS LE Q LNY+ L A     +   +++ R+S AK SPM +T+++C+  +D   L +LVP
Sbjct: 1304 LSVLEPQVLNYLSLRATEQ--EKAAMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVP 1361

Query: 361  HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420
             L  L+RSG+GL T+ G AS I  L  +   D+ PY+  L+  L   +  ++++  +++ 
Sbjct: 1362 RLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLT-DRNSVIQKSC 1420

Query: 421  ASACASVLKYATPSQAQKLIEETAALHIDDKNS--QISCAILLKSYSSVASDVLSGYHAV 478
            A A   +++ +  S  +KL+++    +++ +    + SCA+ + +    + DVL  +   
Sbjct: 1421 AFAMGHLVRTSRDSSTEKLLQKLNGWYMEKEEPIYKTSCALTIHAIGRYSPDVLKNHAKE 1480

Query: 479  IVPVIFISRFE------DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS 532
            ++P+ F+   E       +K   +L+ E+W+EN  G    ++LYL E++++  + + S S
Sbjct: 1481 VLPLAFLGMHEIADEEKSEKEECNLWTEVWQENVPGSFGGIRLYLQELITITQKALQSQS 1540

Query: 533  WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592
            W  K + A A+  + +     +  Y  ++L ++++ + GR W GK+ LL AI  + T+C 
Sbjct: 1541 WKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEELLKAIACVVTACS 1600

Query: 593  KDISAEDPTTPFA--IVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK---FFNIIFP 647
             ++    P  P    I+  V   C K+  KY+  A SC   ++KA ++ +   F NI+ P
Sbjct: 1601 AELEKSVPNQPSTNEILQAVLKECSKENVKYKIVAISCAADILKATKEDRFQEFSNIVIP 1660

Query: 648  LL 649
            L+
Sbjct: 1661 LI 1662
Adapter/scaffolding protein that binds to the 26S proteasome, motor proteins and other compartment specific proteins. May couple the proteasome to different compartments including endosome, endoplasmic reticulum and centrosome. May play a role in ERAD and other enhanced proteolyis.
Homo sapiens (taxid: 9606)
>sp|Q6PDI5|ECM29_MOUSE Proteasome-associated protein ECM29 homolog OS=Mus musculus GN=Ecm29 PE=1 SV=3 Back     alignment and function description
>sp|Q5R6J0|ECM29_PONAB Proteasome-associated protein ECM29 homolog (Fragment) OS=Pongo abelii GN=ECM29 PE=2 SV=2 Back     alignment and function description
>sp|Q9V677|ECM29_DROME Proteasome-associated protein ECM29 homolog OS=Drosophila melanogaster GN=CG8858 PE=1 SV=1 Back     alignment and function description
>sp|P38737|ECM29_YEAST Proteasome component ECM29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM29 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7H8|ECM29_SCHPO Proteasome component ecm29 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ecm29 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query742
224059694 1847 predicted protein [Populus trichocarpa] 0.973 0.390 0.806 0.0
225435886 1813 PREDICTED: proteasome-associated protein 0.977 0.399 0.782 0.0
296083903 2456 unnamed protein product [Vitis vinifera] 0.977 0.295 0.782 0.0
297822255 1898 binding protein [Arabidopsis lyrata subs 0.977 0.381 0.718 0.0
356554187 1814 PREDICTED: LOW QUALITY PROTEIN: proteaso 0.975 0.399 0.730 0.0
20466506 1208 unknown protein [Arabidopsis thaliana] g 0.977 0.600 0.725 0.0
334184491 1826 proteasome component ECM29 [Arabidopsis 0.977 0.397 0.725 0.0
357493829 1976 Proteasome-associated protein ECM29-like 0.971 0.364 0.705 0.0
449481175 1822 PREDICTED: LOW QUALITY PROTEIN: proteaso 0.971 0.395 0.724 0.0
108863968 1815 HEAT repeat family protein, expressed [O 0.975 0.398 0.674 0.0
>gi|224059694|ref|XP_002299974.1| predicted protein [Populus trichocarpa] gi|222847232|gb|EEE84779.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1202 bits (3110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/725 (80%), Positives = 664/725 (91%), Gaps = 3/725 (0%)

Query: 1    MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTY 60
            MS+VYELGDA+MK+ LVDALVTTLTGSGKRKR +KL EDSEVFQEG IGE L GGKLSTY
Sbjct: 1011 MSIVYELGDAAMKKTLVDALVTTLTGSGKRKRAIKLVEDSEVFQEGTIGESLSGGKLSTY 1070

Query: 61   KELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPK 120
            KELC+LANEMGQPD+IYKFMDLAN+Q SLNSKRGAAFGFSKIAKQAGDAL+PHL+LLIP+
Sbjct: 1071 KELCSLANEMGQPDMIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDALQPHLQLLIPR 1130

Query: 121  LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180
            LVR+QYDPDKNVQDAMAHIWKSLVADPKRTID+HLDLI DDL+IQ GSRLWRSREASCL+
Sbjct: 1131 LVRYQYDPDKNVQDAMAHIWKSLVADPKRTIDQHLDLIVDDLIIQCGSRLWRSREASCLA 1190

Query: 181  LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240
            LADIIQGRKF QVGKHL++IWTAAFRAMDDIKETVR AGD+LCR+++SLTIRLCD++LTE
Sbjct: 1191 LADIIQGRKFKQVGKHLKKIWTAAFRAMDDIKETVRNAGDRLCRAISSLTIRLCDISLTE 1250

Query: 241  ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300
            +SDAR++M IVLP LLA+GILSKVDSI KASIGVVMKL KGAGIA+RPHLSDLV CMLES
Sbjct: 1251 VSDAREAMGIVLPLLLADGILSKVDSIRKASIGVVMKLAKGAGIALRPHLSDLVCCMLES 1310

Query: 301  LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVP 360
            LSSLEDQGLNY+ELHA N GIQ+EKLENLRISIAK SPMW+TLDLCINV++TESL+ LVP
Sbjct: 1311 LSSLEDQGLNYVELHAENVGIQSEKLENLRISIAKSSPMWETLDLCINVINTESLNLLVP 1370

Query: 361  HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420
             LA LVRSG+GLNTRVGVASFISLL+ K+G D+KP+TS+LLR+LFPVVKEEKSAAAKRAF
Sbjct: 1371 RLAHLVRSGVGLNTRVGVASFISLLIPKVGADVKPFTSILLRVLFPVVKEEKSAAAKRAF 1430

Query: 421  ASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIV 480
            ASACA VLK+A  SQAQKLIE+TAALH  +KN+QISCAILLKSY SVASDVLSGYHAVI 
Sbjct: 1431 ASACAVVLKHAGHSQAQKLIEDTAALHTGEKNAQISCAILLKSYYSVASDVLSGYHAVIF 1490

Query: 481  PVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSA 540
            PVIFISRFEDDK +S LFEELWE++TSG+RVT+ LYLGEIVSLICEG+ASSSW+SKRKSA
Sbjct: 1491 PVIFISRFEDDKNISGLFEELWEDSTSGERVTIHLYLGEIVSLICEGLASSSWTSKRKSA 1550

Query: 541  KAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDP 600
            +AICKL E++GESLS+YHHVLL+S+MKE+PGRLWEGK++LLYAIG++S+SCHK IS+E+P
Sbjct: 1551 QAICKLSEVMGESLSSYHHVLLDSVMKELPGRLWEGKESLLYAIGALSSSCHKAISSENP 1610

Query: 601  TTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNK 660
             T  AI++MVSSAC KK+KKYREAAFS L+QVIKAF DPKFFN+IFPLLF MC STA NK
Sbjct: 1611 VTSDAILNMVSSACTKKVKKYREAAFSSLDQVIKAFGDPKFFNVIFPLLFGMCDSTAANK 1670

Query: 661  SGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSP 720
            SG   L SDA+K ++ D +V  PL+K+L CV SCIHVAH+NDI EQ+KNL+ L  ISLSP
Sbjct: 1671 SGSA-LASDAAKTDNVDPAV--PLEKILGCVMSCIHVAHLNDIFEQKKNLMDLLLISLSP 1727

Query: 721  GFPWT 725
            GF WT
Sbjct: 1728 GFQWT 1732

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435886|ref|XP_002265928.1| PREDICTED: proteasome-associated protein ECM29 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083903|emb|CBI24291.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297822255|ref|XP_002879010.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297324849|gb|EFH55269.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356554187|ref|XP_003545430.1| PREDICTED: LOW QUALITY PROTEIN: proteasome-associated protein ECM29 homolog [Glycine max] Back     alignment and taxonomy information
>gi|20466506|gb|AAM20570.1| unknown protein [Arabidopsis thaliana] gi|30725540|gb|AAP37792.1| At2g26780 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334184491|ref|NP_850086.2| proteasome component ECM29 [Arabidopsis thaliana] gi|330252792|gb|AEC07886.1| proteasome component ECM29 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357493829|ref|XP_003617203.1| Proteasome-associated protein ECM29-like protein [Medicago truncatula] gi|355518538|gb|AET00162.1| Proteasome-associated protein ECM29-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449481175|ref|XP_004156104.1| PREDICTED: LOW QUALITY PROTEIN: proteasome-associated protein ECM29 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|108863968|gb|ABA91356.2| HEAT repeat family protein, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query742
MGI|MGI:21402201840 AI314180 "expressed sequence A 0.863 0.348 0.330 2.6e-100
UNIPROTKB|Q5VYK31845 ECM29 "Proteasome-associated p 0.863 0.347 0.329 3.4e-100
UNIPROTKB|Q5R6J01810 ECM29 "Proteasome-associated p 0.863 0.354 0.326 1.9e-97
ASPGD|ASPL0000029634 1899 AN5774 [Emericella nidulans (t 0.797 0.311 0.307 2.8e-77
WB|WBGene000084221810 D2045.2 [Caenorhabditis elegan 0.828 0.339 0.303 2.3e-71
UNIPROTKB|G4NFR71835 MGG_08744 "Uncharacterized pro 0.687 0.277 0.297 2.1e-67
SGD|S0000010221868 ECM29 "Scaffold protein" [Sacc 0.831 0.330 0.269 6.2e-65
FB|FBgn0033698 1890 CG8858 [Drosophila melanogaste 0.637 0.250 0.237 1.8e-62
POMBASE|SPAC1782.011679 ecm29 "proteasome complex subu 0.857 0.378 0.250 1.6e-50
UNIPROTKB|G4MR95 2678 MGG_04710 "Translational activ 0.390 0.108 0.218 9.2e-05
MGI|MGI:2140220 AI314180 "expressed sequence AI314180" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 1006 (359.2 bits), Expect = 2.6e-100, P = 2.6e-100
 Identities = 219/662 (33%), Positives = 370/662 (55%)

Query:     1 MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEXXXXXXXXXXKLSTY 60
             + +VYELG+   +Q LV  LV TL  +GKR +  +++ ++ VFQ            LSTY
Sbjct:  1004 LGLVYELGNEQDQQELVSTLVETLM-TGKRVKH-EVSGETVVFQGGGLGKTPDGQGLSTY 1061

Query:    61 KELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPK 120
             KELC+LA+++ QPDL+YKFM+LAN+    NS++GAAFGF+ IA +AG+ L P L  L+P+
Sbjct:  1062 KELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPR 1121

Query:   121 LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180
             L R+Q+DP+  ++ AM  IW +LV D K  +D++L  I  DL+    S +WR RE+SCL+
Sbjct:  1122 LYRYQFDPNLGIRQAMTSIWNALVTD-KSMVDKYLKEILQDLIKNLTSNMWRVRESSCLA 1180

Query:   181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240
             L D+++GR  D V   L  +W   FR  DDIKE+VR A +   ++++ + +++CD    +
Sbjct:  1181 LNDLLRGRPLDDVIDKLPEMWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPA--K 1238

Query:   241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300
              +  ++++ ++LP LL +G++S V  +   SI  ++K+ K AG  ++PH   L+  +LES
Sbjct:  1239 GAAGQRTIAVLLPCLLDKGMMSPVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLES 1298

Query:   301 LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVP 360
             LS LE Q LNY+ L A     + + +++ R+S AK SPM +T+++C+  +D   L +LVP
Sbjct:  1299 LSVLEPQVLNYLSLRATEQ--EKDVMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVP 1356

Query:   361 HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPXXXXXXXXXXXXXX 420
              L  L+RSG+GL T+ G AS I  L  +   D+ PY+  L+  L                
Sbjct:  1357 RLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALL-SGLTDRNSVIQKSC 1415

Query:   421 XXXXXXXLKYATPSQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAV 478
                    ++ +  S  +KL+++    ++  D+   + SCA+ + +    + DVL  +   
Sbjct:  1416 AFAMGHLVRTSRDSSTEKLLQKLNGWYMEKDEPVYKTSCALTIHAIGRYSPDVLKNHAKE 1475

Query:   479 IVPVIFISRFE------DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIXXXX 532
             ++P+ F+   E       +K   +++ E+W+EN  G    ++LYL E++++  + +    
Sbjct:  1476 VLPLAFLGMHEIADEEKSEKEECNMWTEVWQENVPGSFGGIRLYLQELITITQKALQSQS 1535

Query:   533 XXXXXXXXXXICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592
                       +  + +     +  Y  ++L ++M+ + GR W GK+ LL AI  + T+C 
Sbjct:  1536 WKMKAQGAIAMASISKQTSSLVPPYLGMILSALMQGLAGRTWAGKEELLKAIACVVTACS 1595

Query:   593 KDISAEDPTTPFA--IVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKF--FN-IIFP 647
              ++    P  P    I+  V   C K+  KY+  A SC   V+KA ++ +F  F+ I+ P
Sbjct:  1596 TELEKSVPNQPTTNEILQAVLKECCKENLKYKIVAISCAADVLKATKEDRFQEFSDIVIP 1655

Query:   648 LL 649
             L+
Sbjct:  1656 LI 1657
GO:0000502 "proteasome complex" evidence=IEA
GO:0005634 "nucleus" evidence=ISO
GO:0005737 "cytoplasm" evidence=IEA
GO:0005768 "endosome" evidence=IEA
GO:0005769 "early endosome" evidence=ISO
GO:0005770 "late endosome" evidence=ISO
GO:0005771 "multivesicular body" evidence=ISO
GO:0005783 "endoplasmic reticulum" evidence=ISO
GO:0005813 "centrosome" evidence=ISO
GO:0005856 "cytoskeleton" evidence=IEA
GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO
GO:0030134 "ER to Golgi transport vesicle" evidence=ISO
GO:0030139 "endocytic vesicle" evidence=ISO
GO:0030433 "ER-associated protein catabolic process" evidence=ISO
GO:0031410 "cytoplasmic vesicle" evidence=IEA
UNIPROTKB|Q5VYK3 ECM29 "Proteasome-associated protein ECM29 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R6J0 ECM29 "Proteasome-associated protein ECM29 homolog" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029634 AN5774 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00008422 D2045.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4NFR7 MGG_08744 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000001022 ECM29 "Scaffold protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0033698 CG8858 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAC1782.01 ecm29 "proteasome complex subunit Ecm29" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 742
KOG09151702 consensus Uncharacterized conserved protein [Funct 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.95
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.94
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.94
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.92
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.89
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.88
KOG1242569 consensus Protein containing adaptin N-terminal re 99.78
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.76
KOG1242569 consensus Protein containing adaptin N-terminal re 99.72
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.71
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.66
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.56
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.55
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.54
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.54
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.52
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.47
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.45
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.4
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.36
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.35
PTZ00429 746 beta-adaptin; Provisional 99.28
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.18
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.09
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.07
PRK09687280 putative lyase; Provisional 99.05
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.0
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.98
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 98.98
PTZ00429746 beta-adaptin; Provisional 98.97
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.89
PRK09687280 putative lyase; Provisional 98.84
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 98.82
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.8
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 98.78
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.69
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.68
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.62
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 98.61
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.6
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.59
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 98.57
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.56
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.49
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.42
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.38
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 98.35
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 98.31
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.3
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.3
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.27
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 98.25
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.24
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.24
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.18
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 98.16
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.13
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.1
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.06
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 98.05
KOG2956516 consensus CLIP-associating protein [General functi 97.97
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.95
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.95
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.92
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.92
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.91
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.9
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.81
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.79
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.71
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.69
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 97.64
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.63
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.63
KOG4535728 consensus HEAT and armadillo repeat-containing pro 97.62
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.56
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.55
COG5098 1128 Chromosome condensation complex Condensin, subunit 97.54
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 97.5
KOG2956516 consensus CLIP-associating protein [General functi 97.47
COG5656970 SXM1 Importin, protein involved in nuclear import 97.45
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.44
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.41
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.38
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.38
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.38
KOG4535728 consensus HEAT and armadillo repeat-containing pro 97.37
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.36
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.35
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.3
TIGR02270410 conserved hypothetical protein. Members are found 97.29
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.25
PF05804708 KAP: Kinesin-associated protein (KAP) 97.25
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.24
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.21
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.19
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.17
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.16
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 97.12
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.08
KOG2025 892 consensus Chromosome condensation complex Condensi 96.97
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.97
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.96
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.88
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.87
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 96.86
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.85
KOG2259 823 consensus Uncharacterized conserved protein [Funct 96.85
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 96.84
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.71
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.62
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.6
PF14500262 MMS19_N: Dos2-interacting transcription regulator 96.49
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.47
TIGR02270410 conserved hypothetical protein. Members are found 96.45
KOG4653982 consensus Uncharacterized conserved protein [Funct 96.45
PF05004309 IFRD: Interferon-related developmental regulator ( 96.43
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.38
PF05004309 IFRD: Interferon-related developmental regulator ( 96.35
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.27
KOG2062929 consensus 26S proteasome regulatory complex, subun 96.22
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.15
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.15
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 96.09
COG5116926 RPN2 26S proteasome regulatory complex component [ 96.07
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.05
KOG2025 892 consensus Chromosome condensation complex Condensi 95.88
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 95.87
PF05804708 KAP: Kinesin-associated protein (KAP) 95.85
COG5656970 SXM1 Importin, protein involved in nuclear import 95.8
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.75
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 95.73
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 95.72
KOG2149393 consensus Uncharacterized conserved protein [Funct 95.68
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.63
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 95.62
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.58
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.52
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.51
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 95.49
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.49
COG5096757 Vesicle coat complex, various subunits [Intracellu 95.47
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 95.44
KOG4413524 consensus 26S proteasome regulatory complex, subun 95.33
COG5116926 RPN2 26S proteasome regulatory complex component [ 95.27
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 95.09
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 94.97
KOG2137700 consensus Protein kinase [Signal transduction mech 94.96
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.96
KOG04141251 consensus Chromosome condensation complex Condensi 94.94
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.83
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 94.7
KOG0567289 consensus HEAT repeat-containing protein [General 94.67
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 94.53
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.46
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 94.4
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.2
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.2
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 93.97
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 93.91
KOG2062929 consensus 26S proteasome regulatory complex, subun 93.79
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 93.62
KOG0414 1251 consensus Chromosome condensation complex Condensi 93.57
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 93.5
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 93.34
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 93.11
smart00638574 LPD_N Lipoprotein N-terminal Domain. 92.8
KOG2549576 consensus Transcription initiation factor TFIID, s 92.77
KOG2137700 consensus Protein kinase [Signal transduction mech 92.73
KOG18511710 consensus Uncharacterized conserved protein [Funct 92.53
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 92.48
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 92.31
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 92.01
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 91.89
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 91.62
KOG2933334 consensus Uncharacterized conserved protein [Funct 91.52
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 91.5
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 91.45
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 91.19
KOG1293678 consensus Proteins containing armadillo/beta-caten 91.05
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 90.81
KOG2549576 consensus Transcription initiation factor TFIID, s 90.69
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 90.66
KOG0413 1529 consensus Uncharacterized conserved protein relate 90.64
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 90.6
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 90.23
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 90.19
KOG1243690 consensus Protein kinase [General function predict 90.11
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 90.05
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 89.79
KOG1243690 consensus Protein kinase [General function predict 89.75
KOG2081559 consensus Nuclear transport regulator [Intracellul 89.44
KOG1293678 consensus Proteins containing armadillo/beta-caten 89.35
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 89.13
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 88.93
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 88.65
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 88.37
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 87.82
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 87.47
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 87.47
PF14868559 DUF4487: Domain of unknown function (DUF4487) 87.22
KOG1048717 consensus Neural adherens junction protein Plakoph 86.97
KOG2081559 consensus Nuclear transport regulator [Intracellul 86.96
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 86.93
KOG2973353 consensus Uncharacterized conserved protein [Funct 86.9
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 86.58
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 86.28
PF1036392 DUF2435: Protein of unknown function (DUF2435) 86.21
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 85.97
KOG18101417 consensus Cell cycle-associated protein [Cell cycl 85.35
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 84.83
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 84.42
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 84.42
smart00638574 LPD_N Lipoprotein N-terminal Domain. 84.35
KOG0567289 consensus HEAT repeat-containing protein [General 84.23
PF1036392 DUF2435: Protein of unknown function (DUF2435) 84.22
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 83.88
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 83.6
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 83.48
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 83.12
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 83.1
PF10350255 DUF2428: Putative death-receptor fusion protein (D 82.96
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 82.11
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 81.7
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 81.19
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 80.99
KOG2973353 consensus Uncharacterized conserved protein [Funct 80.43
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 80.03
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-120  Score=1027.69  Aligned_cols=630  Identities=45%  Similarity=0.786  Sum_probs=591.6

Q ss_pred             CcceeecCChhHHHHHHHHHHHHhccCCccccccccCCCcccccCCcccCCCCCCCcchHHHHHHHhhhcCChhHHHHHH
Q 004614            1 MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFM   80 (742)
Q Consensus         1 l~~~y~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~~f~~g~~~~~~~~~~~~tyk~l~~lA~~~~~p~lv~~fm   80 (742)
                      ||||||+||.++|++||++||+|||||+++  +++|++|||||++|+||+||+||++|||||||+||+++||||||||||
T Consensus       885 lglVYelgd~~~k~~LV~sL~~tl~~Gkr~--~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM  962 (1702)
T KOG0915|consen  885 LGLVYELGDSSLKKSLVDSLVNTLTGGKRK--AIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFM  962 (1702)
T ss_pred             ceEEEecCCchhHHHHHHHHHHHHhccccc--cceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHH
Confidence            799999999999999999999999996544  689999999999999999999999999999999999999999999999


Q ss_pred             HHhccccchhhhhhHHhhHHHHHHHhhhhhchhhhhhhHHHhhhcCCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004614           81 DLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFD  160 (742)
Q Consensus        81 ~l~~~~~~w~~r~~A~~~l~~i~~~~~~~l~~~l~~lip~L~~~~~Dp~~~VR~a~~~iw~~lv~d~~~~i~~~~~~il~  160 (742)
                      +||+|++.||||+||||||++|++++++.++||++++||+||||+|||++.||+||.+||++|+.|++.++++|+.+|++
T Consensus       963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen  963 QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred             HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHhccCCchhhhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhccccCc
Q 004614          161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE  240 (742)
Q Consensus       161 ~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~~~VR~aA~~~~~~l~~~~~r~~~~~~~~  240 (742)
                      +|+.++++++|||||+||.|+.||++|++.+++..+++++|.++||+|||+|++||+||.++++.++++|+|.|++.+  
T Consensus      1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~-- 1120 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN-- 1120 (1702)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999854  


Q ss_pred             cchhHhHHHHHhHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHhccccchHHHHHHHHHhhhcC
Q 004614          241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG  320 (742)
Q Consensus       241 ~~~~~~~l~~lLP~Ll~~gl~~~~~~vr~~a~~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e~~~~~~~~~~a~~~~  320 (742)
                      ..+++++++.+||||++.|+.++.++||++++.++++|++..|+.++||+|+|+|.|+++.+..||+++||+..++  ++
T Consensus      1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~--~~ 1198 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL--IN 1198 (1702)
T ss_pred             cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh--hh
Confidence            3568899999999999999999999999999999999999999999999999999999999999999999999888  67


Q ss_pred             cchhhhhHHhhhhccCCcHHHHHHHHHhhcChhHHhhHHHHHHHHHHccCCCchHhhHHHHHHHHHHHhcccccccHHHH
Q 004614          321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML  400 (742)
Q Consensus       321 ~~~~~~d~~r~~~~~~s~l~~al~~~~~~~d~~~l~~lvp~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~l  400 (742)
                      ++.+++|++|.+++++||||+++++|++|+|.+++.+++|++.+++|.++|+++|++|+.|+..|+.++|.++.||.+++
T Consensus      1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred             hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhchhhhhhhhhhh
Q 004614          401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVI  479 (742)
Q Consensus       401 l~~Ll~~l~~D~~~~Vr~~~~~al~~L~~~~~~~~~~~li~~l~~~~~~-d~~~r~~a~~~l~~i~~~~~~~~~~~~~~v  479 (742)
                      +++|+.++ .|||+.||+.++.|+|+|+++.++++..++++.+..+|.+ ++..+..++..+..|++++.+.|++|.+.+
T Consensus      1279 l~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaI 1357 (1702)
T KOG0915|consen 1279 LRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAI 1357 (1702)
T ss_pred             HHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHH
Confidence            99999999 6999999999999999999999999999999999999963 344344444444449999999999999999


Q ss_pred             hhHhhHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHhCcchh-hh
Q 004614          480 VPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGESLS-NY  557 (742)
Q Consensus       480 lP~l~~~~~d~~~~v~~~~~~~~~~~~~~~~~~i~~yl~~il~~l~~~L~~-~sw~vR~~Aa~~lg~La~~~g~~~~-~~  557 (742)
                      +|++|.+||+++++..++|.++|.++++|+.++++.|.++|+..++....+ .+|.+|.++|+++..++........ |+
T Consensus      1358 LPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ 1437 (1702)
T KOG0915|consen 1358 LPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPV 1437 (1702)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHH
Confidence            999999999998999999999999999999999999999998887777655 4599999999999999987766554 57


Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcccccCcCCCCchHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 004614          558 HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR  637 (742)
Q Consensus       558 ~~~l~p~L~~~l~~r~~~~ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~~~~~R~~a~~~Lg~l~~~~~  637 (742)
                      +..+.+.+...+.||+|+||+.+++|+.....+|...+..    -.+.|..+..+++.+++..|+..+..+.|....+.+
T Consensus      1438 ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~----~~~si~~A~~~e~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1438 ILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKR----NMSSIEHAVMEEVSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHH----hchHHHHHHHHHHHHHHhHHHHHHHhhhHHHHhhhh
Confidence            8889999999999999999999999999998888765432    245899999999999999999999999999999987


Q ss_pred             CCch
Q 004614          638 DPKF  641 (742)
Q Consensus       638 ~~~~  641 (742)
                      .+.+
T Consensus      1514 ~e~~ 1517 (1702)
T KOG0915|consen 1514 AERF 1517 (1702)
T ss_pred             hhhH
Confidence            6543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query742
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 9e-12
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 5e-08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-05
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 3e-06
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 3e-04
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 9e-04
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 70.7 bits (172), Expect = 1e-12
 Identities = 104/691 (15%), Positives = 192/691 (27%), Gaps = 227/691 (32%)

Query: 113 HLRLLIPKLVR-FQYDPD-KNVQDAMAHIWKS-----LVADPKRTIDEHLDLIFDDLLIQ 165
             + ++      F  + D K+VQD    I        ++             +F   L+ 
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA--VSGTLRLFW-TLLS 73

Query: 166 SGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR----IWTA---AFRAMDDIKETVRTA 218
                             ++Q  KF  V + LR     + +      R    +       
Sbjct: 74  KQEE--------------MVQ--KF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 219 GDKLCRSVTSLTIRLCDVT----LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274
            D+L            +V+      ++  A   +      +L +G               
Sbjct: 116 RDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELR-PAKNVLIDG--------------- 157

Query: 275 VMKLVKGAGIAIRPHLSDLVSCM-LESLSSLEDQGLNYIELHAANAGIQT------EKLE 327
            +    G+G           + + L+   S + Q     ++   N           E L+
Sbjct: 158 -VL---GSG----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 328 NLRISIAKGSPMWDTL-DLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386
            L   I    P W +  D   N+     +  +   L RL++S                  
Sbjct: 204 KLLYQI---DPNWTSRSDHSSNI--KLRIHSIQAELRRLLKS------------------ 240

Query: 387 QKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAAL 446
                  KPY + LL     V+   ++A A  AF                          
Sbjct: 241 -------KPYENCLL-----VLLNVQNAKAWNAFN------------------------- 263

Query: 447 HIDDKNSQISCAILLKS-YSSVASDVLSGYHAVIVPVIFISR-FEDD-------KYVSDL 497
                   +SC ILL + +  V  D LS      + +   S     D       KY+   
Sbjct: 264 --------LSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 498 FEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN- 556
            ++L  E  + +       L  I   I +G+A  +W + +       KL  I+  SL+  
Sbjct: 315 PQDLPREVLTTN----PRRLSIIAESIRDGLA--TWDNWKHVNCD--KLTTIIESSLNVL 366

Query: 557 --------YHH--VLLES--IMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE---DPT 601
                   +    V   S  I   +   +W         +  +    HK    E     +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKES 424

Query: 602 TPFAIVDMVSSAC----------RKKIKKYREAAFSCLEQVIKAFRDPKFFNII------ 645
           T  +I  +               R  +  Y        + +I  + D  F++ I      
Sbjct: 425 T-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 646 ---------FPLLF--------EMCGS-TALNKSGQV-PLPSDASKEES----ADESVSA 682
                    F ++F        ++    TA N SG +          +      D     
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 683 PLDKVLDCVSSCIHVAHVNDIIEQEKNLVQL 713
            ++ +LD +         N I  +  +L+++
Sbjct: 544 LVNAILDFLPKIEE----NLICSKYTDLLRI 570
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 742
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-07
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-04
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.002
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 8e-05
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 8e-05
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 1e-07
 Identities = 56/581 (9%), Positives = 135/581 (23%), Gaps = 62/581 (10%)

Query: 174 REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAG-------------- 219
           R  +   L   +Q           R++     + ++D    V+                 
Sbjct: 20  RFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY 79

Query: 220 ------DKLC----------RSVTSLTIRLCDVTLTEISDARQSMDIVLPFL---LAEGI 260
                 D LC          R ++S+ ++     L   S        V   +   L   I
Sbjct: 80  QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI 139

Query: 261 LSKVD-SISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANA 319
             + D S+   ++ ++  ++   G  +      +++C+L  L+S        +      A
Sbjct: 140 AKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRL----AVRKRTIIA 195

Query: 320 GIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVA 379
                                  L   +          L+ HL   +     ++T     
Sbjct: 196 -----------------------LGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYI 232

Query: 380 SFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKL 439
             I+ + ++ G  I  Y   ++ L+      +     +     A  S ++         +
Sbjct: 233 QCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCI-QAFESFVRRCPKEVYPHV 291

Query: 440 IEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFE 499
                                     +                 +    +    V     
Sbjct: 292 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 351

Query: 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHH 559
           +  +   S     L  +   +   +         + K     A   L +      S    
Sbjct: 352 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411

Query: 560 VLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIK 619
                  +     L      ++ A+                     +V+++  A  + I 
Sbjct: 412 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP 471

Query: 620 KYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADES 679
                    L     +            ++         +   Q  +P   +        
Sbjct: 472 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYK 531

Query: 680 VSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSP 720
           +++    V   +   I         +    +  LFT ++  
Sbjct: 532 ITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 572
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query742
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.94
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.91
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.87
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.87
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.73
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.7
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.69
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.66
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.66
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.62
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.61
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.53
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.53
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.48
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.25
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.24
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.21
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.03
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.93
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.66
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.41
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.82
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.6
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.45
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 95.8
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 92.71
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 91.51
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=289.60  Aligned_cols=629  Identities=14%  Similarity=0.151  Sum_probs=435.8

Q ss_pred             HHHHHHHHH---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             999998642---19814899999986101111345667723999999955533-----0433206688861028999879
Q 004614           61 KELCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDAL-----KPHLRLLIPKLVRFQYDPDKNV  132 (742)
Q Consensus        61 k~l~~lA~~---~g~p~lv~~fm~l~~~~~~w~~r~gA~~~l~~I~~~~~~~l-----~~~l~~lip~L~~~~~Dp~~~V  132 (742)
                      ..+..++..   -.||+++..++.+..+. .++.++||..+++.|++...+.+     ...+..++|.++.+..|+++.|
T Consensus       110 ~~i~~i~~~~~~~~Wpell~~L~~~l~s~-~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~v  188 (888)
T d1qbkb_         110 ILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI  188 (888)
T ss_dssp             TTTHHHHTTTSSCSSTTTSTTTTTSSTGG-GSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCS
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             99999998718211299999999986799-98999999999999999868876077888799999999999863888899


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999998995369778899999999999988508987357999999999975149910444679999999999804784
Q 004614          133 QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK  212 (742)
Q Consensus       133 R~a~~~iw~~lv~d~~~~i~~~~~~il~~Ll~~l~~~~wrvR~aa~~Al~~L~~~~~~~~l~~~L~~i~~~l~~~l~D~~  212 (742)
                      |.++..+++.++.........+++.+++.++....++++++|+.+|.+|..+++... +.+.||+..+++.+...+.|..
T Consensus       189 r~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~l~~~l~~i~~~~l~~~~~~~  267 (888)
T d1qbkb_         189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQDQD  267 (888)
T ss_dssp             SSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCT-TTTTTTTTTTTTTTTTTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999877788740388999999999988876079306779999999998998767-8889988878999998628986


Q ss_pred             HHHHHHHHHHHHHHHHH-----------------HHH------------HHCCC----C---------------------
Q ss_conf             88999999999999999-----------------986------------30145----5---------------------
Q 004614          213 ETVRTAGDKLCRSVTSL-----------------TIR------------LCDVT----L---------------------  238 (742)
Q Consensus       213 ~~VR~aA~~~~~~l~~~-----------------~~r------------~~~~~----~---------------------  238 (742)
                      +.||..|...+.++.+.                 +..            ..+..    .                     
T Consensus       268 e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  347 (888)
T d1qbkb_         268 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQH  347 (888)
T ss_dssp             HHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999889999999971645899999999999999987421268899885546654421425777788999999999874


Q ss_pred             ---------------------C---------------CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             ---------------------7---------------6210685999876898644889971788899999999999730
Q 004614          239 ---------------------T---------------EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA  282 (742)
Q Consensus       239 ---------------------~---------------~~~~~~~~l~~iLP~Ll~~gl~~~~~~vr~~a~~~l~~la~~~  282 (742)
                                           .               ....+..++..++|++.+ .+.+++|..|..++.+++.+++.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~-~l~s~~~~~reaa~~alg~i~eg~  426 (888)
T d1qbkb_         348 DEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE-LLFHHEWVVKESGILVLGAIAEGC  426 (888)
T ss_dssp             TTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHH-TTTSSSHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             0111210231034454430011336999999987667651299999999999887-512205689999999864355557


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH----CCHHHHHHH
Q ss_conf             8365542134799999950364457787999974310751355667765321689189999999951----394579548
Q 004614          283 GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV----VDTESLDQL  358 (742)
Q Consensus       283 g~~l~p~l~~Li~~Ll~~ls~~e~~~~~~~~~~a~~~~~~~~~id~~r~~~~~~s~l~~al~~~~~~----~d~~~l~~l  358 (742)
                      .+.+.||+++++|.++..+++..+.++...++                           +++.+..+    .....+..+
T Consensus       427 ~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~---------------------------~l~~~~~~~~~~~~~~~~~~~  479 (888)
T d1qbkb_         427 MQGMIPYLPELIPHLIQCLSDKKALVRSITCW---------------------------TLSRYAHWVVSQPPDTYLKPL  479 (888)
T ss_dssp             HHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHH---------------------------HHHHTHHHHHSSCHHHHTTTH
T ss_pred             HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf             87742120355679998426998999999999---------------------------999999986654156554555


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-----H
Q ss_conf             89999999700797417669999999999834463420898999986655103639999999999999884179-----8
Q 004614          359 VPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----P  433 (742)
Q Consensus       359 ip~L~~~l~~~~~~~~r~~a~~~l~~L~~~~g~~l~p~~~~ll~~Ll~~l~~D~~~~Vr~~~~~ai~~L~~~~~-----~  433 (742)
                      ++.+.+.+.++ ...++..++.++..++...+..+.||.+.+++.+...+ ++.....+.....+++.++....     .
T Consensus       480 l~~ll~~l~d~-~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~~~~~~~~  557 (888)
T d1qbkb_         480 MTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKP  557 (888)
T ss_dssp             HHHHHHHHSSS-CHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHGGGGCSH
T ss_pred             HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             89999884289-87899989999999998755311357999999999998-60037799999999999998623101336


Q ss_pred             HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----------------CCCCHH
Q ss_conf             889999999997505---881358899999999884505655335432446866764-----------------598267
Q 004614          434 SQAQKLIEETAALHI---DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISR-----------------FEDDKY  493 (742)
Q Consensus       434 ~~l~~li~~l~~~~~---~d~~~r~~~~~~l~~i~~~~~~~~~~~~~~ilP~l~~~~-----------------~d~~~~  493 (742)
                      +.+..+++.+.+.+.   .+...+....+.+..+....+..|.+|...+.+.++...                 ...+++
T Consensus       558 ~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  637 (888)
T d1qbkb_         558 EYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD  637 (888)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             79999999999999751210688999999999999986787765699999999988998999999874162011000688


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999855897155872199--79999996204999899999999999999983711243399999999976499
Q 004614          494 VSDLFEELWEENTSGDRVTLQLYLG--EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG  571 (742)
Q Consensus       494 v~~~~~~~~~~~~~~~~~~i~~yl~--ei~~~l~~~L~s~sw~vR~~AA~~Lg~La~~~g~~l~~~~~~l~p~L~~~l~~  571 (742)
                      ......+....+..+.+..+.++..  .+++++..++.+.++.+|+.|..++|+++...+..+.++++.++|.+.+.+..
T Consensus       638 ~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~  717 (888)
T d1qbkb_         638 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP  717 (888)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999888998730566666658569999999967997689999999988778751687787799999999987386


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHCCC---CCHHHHHH
Q ss_conf             8722399999999999963110137689995688999999998220--998999999999999998299---71478587
Q 004614          572 RLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD---PKFFNIIF  646 (742)
Q Consensus       572 r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~iv~~l~~~~~~~--~~~~r~~A~~~Lg~l~~~~~~---~~~~~~~~  646 (742)
                      ..+++|..++.+++.++...++.+.    ++.+.+++.+++-+++.  +..++.+++.++|++....|+   .++.+.+.
T Consensus       718 ~~~~v~~~a~~~ig~ia~~~~~~~~----py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~  793 (888)
T d1qbkb_         718 EFISVCNNATWAIGEISIQMGIEMQ----PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR  793 (888)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTGGGGG----GGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf             7789999999999999998779865----059999999999876998637899999999999998797988864999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             99996305766667888899998775443355677633-56655556678742305688610014666563289999710
Q 004614          647 PLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPL-DKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWT  725 (742)
Q Consensus       647 ~il~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~p~-~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  725 (742)
                      +++..+.......  -...+-...+......+.+..+. ..++.++.+-.  .-.+++.....++++.|..-+ |+..|+
T Consensus       794 ~~~~~l~~~~d~~--ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~-~~~~w~  868 (888)
T d1qbkb_         794 PWCTSLRNIRDNE--EKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWI--NPKDDLRDMFCKILHGFKNQV-GDENWR  868 (888)
T ss_dssp             HHHHHHTTSCCSH--HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCS--SCCHHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred             HHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHC-CCHHHH
T ss_conf             9999726379818--99999999999999784988877999999997037--997899999999999999876-927599


Q ss_pred             HHHHH
Q ss_conf             44222
Q 004614          726 GFRKR  730 (742)
Q Consensus       726 ~~~~~  730 (742)
                      -+.+.
T Consensus       869 ~~~~~  873 (888)
T d1qbkb_         869 RFSDQ  873 (888)
T ss_dssp             HHHHS
T ss_pred             HHHHC
T ss_conf             99975
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure