Citrus Sinensis ID: 004656

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------74
MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL
cccEEEEEEEcccccccccEEEEEEccEEEEEEcccccccccccccccccccccccEEEEcccccccccHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccEEEccccEEEcccccccEEEEEEEccccccEEEEEEEEccEEEEEEEcccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccEEEcccccHHcccccccEEEEEcccccccHHHHHHHHHHccccccEEEEEcccccccHHHHHHcccccccEEEEccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEEccEEEEEEEEEEEEccccccHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHcccccEEEcccccEEEEccccEEEEEEccHHHHHccccEEccccEEEEEEEEEEEccccccccccccccccccccEEEccccHHHHHHHHHHcccEEEEEccEEEEccEEEEEEcccccccccccccccEEEEccccHHHHHHHHHHHHHcccc
cccEEEEEEccccccccccEEEEEEcccEEEEEccccccccHHccccccccHccccEEEEEcccHHHHcHHHHHHHHccccccEEcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcEEEEEccEEEEEccccccEEEEEcccccEEEEEEEEEEccccEEEEEEcccccccccccccEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHcccccEEEEEccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHccccccEccEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEcHHHcEEccccccccccccccccccccccccHHHHcccccEEEEEEEEEEEEEEEEEEEEcccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccEEccccccEEEEEcccEEEEEEEcHHHHHHcEEEEccccEEEEEEEEEEcccccccEcccccccccccccEEEccccHHHHHHHHHHcccEEEEEcEEEEEccEEEEEEEcccccccccccccEEEEEccccHHHHHHHHHHHHHHccc
mgtsvqvtplsgvfnenplsyLVSIDGfnflidcgwndhfdpsllqplsKVASTIDAVllshpdtlhlgaLPYAMkqlglsapvfstepvyRLGLLTMYDQYlsrrqvsefdlftlddidsaFQSVTRltysqnyhlsgkgegivvaphvaghllggTVWKITKDGEDVIYAVDYnrrkekhlngtvlesfvrpavLITDAYnalhnqpprqqREMFQDAISKTLRAggnvllpvdsAGRVLELLLILEDYwaehslnypIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINkseldnapdgpKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLArmlqadpppkavkvtmsrrvplvgEELIAYEEEQTRLKKEEALKASLVKEeeskaslgpdnnlsgdpmvidannanasadvvephggryrdilidgfvppstsvapmfpfyennsewddfgevinpddyiikdedmdqaamhiggddgkldegsaslildakpskvvsneLTVQVKCLLIFIDyegradgrSIKTILSHVAPLKLVLVHGSAEATEHLKQHClkhvcphvytpqieetIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEvgktengmlsllpistpapphksvlvgdlkmadlkpflsskgiqvefaggalrcgeyvtirkvgpagqkgggsgtqqiviegplcedYYKIRAYLYSQFYLL
mgtsvqvtplsgvfneNPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNrrkekhlngtvlesfVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLArmlqadpppkavkvtmsrrVPLVGEELIAYEEEQTRLKKEEALKASLVkeeeskaslgpdnnlsgDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILdakpskvvsneltVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVgpagqkgggsgtqQIVIEGPLCEDYYKIRAYLYSQFYLL
MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDannanaSADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL
*********LSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH************DAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQ**************RVPLVGEELIAY**************************************************VVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDE**********************LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPIST****HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYL*
*GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNA**********EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINK******PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQT************************************************************************FPFYENNSEWDDFGEVINPDD*************************************VVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN*****************VLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQ*********IVIEGPLCEDYYKIRAYLYSQFYLL
MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKAS***********GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP********GTQQIVIEGPLCEDYYKIRAYLYSQFYLL
*GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKAS*************************************P**GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDE********************ASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL
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MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAxxxxxxxxxxxxxxxxxxxxxEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query739 2.2.26 [Sep-21-2011]
Q9LKF9739 Cleavage and polyadenylat yes no 0.994 0.994 0.796 0.0
Q652P4738 Cleavage and polyadenylat yes no 0.994 0.995 0.738 0.0
Q9V3D6756 Probable cleavage and pol yes no 0.959 0.937 0.375 1e-149
O35218782 Cleavage and polyadenylat yes no 0.955 0.902 0.359 1e-147
Q10568782 Cleavage and polyadenylat yes no 0.952 0.900 0.357 1e-146
Q9P2I0782 Cleavage and polyadenylat yes no 0.952 0.900 0.356 1e-146
Q9W799783 Cleavage and polyadenylat N/A no 0.960 0.906 0.362 1e-143
Q55BS1784 Cleavage and polyadenylat yes no 0.968 0.913 0.334 1e-126
O17403843 Probable cleavage and pol yes no 0.867 0.760 0.332 1e-102
A8XUS3842 Probable cleavage and pol N/A no 0.853 0.749 0.324 1e-100
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2 Back     alignment and function desciption
 Score = 1231 bits (3185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/743 (79%), Positives = 669/743 (90%), Gaps = 8/743 (1%)

Query: 1   MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
           MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct: 1   MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60

Query: 61  SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
           SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDID
Sbjct: 61  SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120

Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
           SAFQ+V RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180

Query: 181 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
           +HLNGTVL+SFVRPAVLITDAY+AL+ NQ  RQQR+  F D ISK L  GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240

Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
           GRVLELLLILE +W++   ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300

Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
           LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360

Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
           TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS 
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420

Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
           G D+N S +PM+ID    +   DV+  HG  Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476

Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
           DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V 
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536

Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
           C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH  AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596

Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
           ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE  M SLLP+   A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656

Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 716
           HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716

Query: 717 IEGPLCEDYYKIRAYLYSQFYLL 739
           IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.
Arabidopsis thaliana (taxid: 3702)
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1 Back     alignment and function description
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2 OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1 Back     alignment and function description
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus GN=Cpsf2 PE=1 SV=1 Back     alignment and function description
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus GN=CPSF2 PE=1 SV=1 Back     alignment and function description
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2 Back     alignment and function description
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2 OS=Xenopus laevis GN=cpsf2 PE=1 SV=1 Back     alignment and function description
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2 OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1 Back     alignment and function description
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1 Back     alignment and function description
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query739
255553723740 cleavage and polyadenylation specificity 0.997 0.995 0.866 0.0
449446027738 PREDICTED: cleavage and polyadenylation 0.995 0.997 0.847 0.0
224121102740 predicted protein [Populus trichocarpa] 0.998 0.997 0.846 0.0
356530856736 PREDICTED: cleavage and polyadenylation 0.993 0.997 0.847 0.0
356530858742 PREDICTED: cleavage and polyadenylation 0.997 0.993 0.841 0.0
356559788738 PREDICTED: cleavage and polyadenylation 0.997 0.998 0.837 0.0
225464483740 PREDICTED: cleavage and polyadenylation 0.998 0.997 0.839 0.0
356559790743 PREDICTED: cleavage and polyadenylation 0.995 0.990 0.831 0.0
297808393739 CPSF100 [Arabidopsis lyrata subsp. lyrat 0.994 0.994 0.803 0.0
15237845739 cleavage and polyadenylation specificity 0.994 0.994 0.796 0.0
>gi|255553723|ref|XP_002517902.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223542884|gb|EEF44420.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1327 bits (3435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/742 (86%), Positives = 688/742 (92%), Gaps = 5/742 (0%)

Query: 1   MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
           MGTSVQVTPL+GV+NENPLSYL+SID FN LIDCGWNDHFDPSLLQPLS+VASTIDAVLL
Sbjct: 1   MGTSVQVTPLNGVYNENPLSYLISIDNFNLLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60

Query: 61  SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
           SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+ VSEFDLF+LDDID
Sbjct: 61  SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKAVSEFDLFSLDDID 120

Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
           SAFQ++TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 SAFQNITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180

Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR--EMFQDAISKTLRAGGNVLLPVDSA 238
           +HLNGTVLESFVRPAVLITDAYNAL NQPPRQQR  E  +  I KTL AGGNVLLPVD+A
Sbjct: 181 RHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDTA 240

Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
           GRVLELLLILE +WA   LNYPI+FLTYVSSSTIDYVKSFLEWM DSI KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQFWAHRLLNYPIFFLTYVSSSTIDYVKSFLEWMSDSIAKSFETSRDNAF 300

Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
           LLKHVTLLINK+ELDNAP+ PK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQFG
Sbjct: 301 LLKHVTLLINKNELDNAPNVPKVVLASMASLEAGFSHDIFVEWAADVKNLVLFTERGQFG 360

Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
           TLARMLQADPPPKAVKVTMSRRVPLVG+ELIAYEEEQ RLKKEE L AS++KEEE+K S 
Sbjct: 361 TLARMLQADPPPKAVKVTMSRRVPLVGDELIAYEEEQKRLKKEEELNASMIKEEEAKVSH 420

Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
           GPD+NLS DPM+IDA+N NAS D V   G  YRDIL DGFVPPSTSVAPMFPFYEN +EW
Sbjct: 421 GPDSNLS-DPMIIDASNNNASLDAVGSQGTGYRDILFDGFVPPSTSVAPMFPFYENTTEW 479

Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
           DDFGEVINPDDY+IKD+DMDQ  MH+GGD DGK DEGSAS ILD KPSKVVS+ELTVQVK
Sbjct: 480 DDFGEVINPDDYVIKDDDMDQP-MHVGGDIDGKFDEGSASWILDTKPSKVVSSELTVQVK 538

Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
           C LI++DYEGR+DGRSIK+IL+HVAPLKLVLVHGSAE+TEHLKQHCLKHVCPHVY PQIE
Sbjct: 539 CSLIYMDYEGRSDGRSIKSILAHVAPLKLVLVHGSAESTEHLKQHCLKHVCPHVYAPQIE 598

Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
           ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD+EIAWVDAEVGKTE+  LSLLPIST APP
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDFEIAWVDAEVGKTESDALSLLPISTSAPP 658

Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
           HKSVLVGDLKMAD K FL+SKG+QVEFAGGALRCGEYVT+RKVG   QKGGGSGTQQIVI
Sbjct: 659 HKSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNINQKGGGSGTQQIVI 718

Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
           EGPLCEDYYKIR YLYSQFYLL
Sbjct: 719 EGPLCEDYYKIREYLYSQFYLL 740

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449446027|ref|XP_004140773.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224121102|ref|XP_002330904.1| predicted protein [Populus trichocarpa] gi|222872726|gb|EEF09857.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530856|ref|XP_003533995.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356530858|ref|XP_003533996.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356559788|ref|XP_003548179.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|225464483|ref|XP_002268591.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Vitis vinifera] gi|302143847|emb|CBI22708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559790|ref|XP_003548180.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297808393|ref|XP_002872080.1| CPSF100 [Arabidopsis lyrata subsp. lyrata] gi|297317917|gb|EFH48339.1| CPSF100 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237845|ref|NP_197776.1| cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit; Short=AtCPSF100; Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO DEFECTIVE 1265; AltName: Full=Protein ENHANCED SILENCING PHENOTYPE 5 gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|332005845|gb|AED93228.1| cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query739
TAIR|locus:2172843739 CPSF100 "cleavage and polyaden 0.994 0.994 0.796 0.0
UNIPROTKB|Q9P2I0782 CPSF2 "Cleavage and polyadenyl 0.853 0.806 0.403 6.1e-144
UNIPROTKB|Q10568782 CPSF2 "Cleavage and polyadenyl 0.853 0.806 0.403 1e-143
UNIPROTKB|E2R496782 CPSF2 "Uncharacterized protein 0.853 0.806 0.400 1.3e-143
UNIPROTKB|Q9W799783 cpsf2 "Cleavage and polyadenyl 0.852 0.804 0.398 3.4e-143
RGD|1309687782 Cpsf2 "cleavage and polyadenyl 0.853 0.806 0.400 3.4e-143
MGI|MGI:1861601782 Cpsf2 "cleavage and polyadenyl 0.853 0.806 0.400 4.3e-143
ZFIN|ZDB-GENE-040718-79790 cpsf2 "cleavage and polyadenyl 0.853 0.798 0.395 7e-143
UNIPROTKB|F1NMN0782 CPSF2 "Uncharacterized protein 0.853 0.806 0.398 1.4e-142
FB|FBgn0027873756 Cpsf100 "Cleavage and polyaden 0.837 0.818 0.401 2.4e-138
TAIR|locus:2172843 CPSF100 "cleavage and polyadenylation specificity factor 100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3106 (1098.4 bits), Expect = 0., P = 0.
 Identities = 592/743 (79%), Positives = 668/743 (89%)

Query:     1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
             MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct:     1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60

Query:    61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
             SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDID
Sbjct:    61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120

Query:   121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
             SAFQ+V RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct:   121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180

Query:   181 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
             +HLNGTVL+SFVRPAVLITDAY+AL+ NQ  RQQR+  F D ISK L  GGNVLLPVD+A
Sbjct:   181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240

Query:   239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
             GRVLELLLILE +W++   ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct:   241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300

Query:   299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
             LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct:   301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360

Query:   359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
             TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS 
Sbjct:   361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420

Query:   419 GPDNNLSGDPMVIDXXXXXXSADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
             G D+N S +PM+ID        DV+  HG  Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct:   421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476

Query:   479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
             DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V 
Sbjct:   477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536

Query:   538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
             C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH  AEATEHLKQHCL ++CPHVY PQIE
Sbjct:   537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596

Query:   598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
             ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE  M SLLP+   A P
Sbjct:   597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656

Query:   658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGG-ALRCGEYVTIRKVGPAGQKGGGSGTQQIV 716
             HK VLVGDLK+AD K FLSSKG+QVEFAGG ALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct:   657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716

Query:   717 IEGPLCEDYYKIRAYLYSQFYLL 739
             IEGPLCEDYYKIR YLYSQFYLL
Sbjct:   717 IEGPLCEDYYKIRDYLYSQFYLL 739
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016787 "hydrolase activity" evidence=IEA
GO:0003677 "DNA binding" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS;NAS
GO:0006378 "mRNA polyadenylation" evidence=ISS
GO:0006379 "mRNA cleavage" evidence=ISS
GO:0035194 "posttranscriptional gene silencing by RNA" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006397 "mRNA processing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
UNIPROTKB|Q9P2I0 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q10568 CPSF2 "Cleavage and polyadenylation specificity factor subunit 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R496 CPSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9W799 cpsf2 "Cleavage and polyadenylation specificity factor subunit 2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|1309687 Cpsf2 "cleavage and polyadenylation specific factor 2, 100kDa" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1861601 Cpsf2 "cleavage and polyadenylation specific factor 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-79 cpsf2 "cleavage and polyadenylation specific factor 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMN0 CPSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0027873 Cpsf100 "Cleavage and polyadenylation specificity factor 100" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9P2I0CPSF2_HUMANNo assigned EC number0.35610.95260.9002yesno
Q9V3D6CPSF2_DROMENo assigned EC number0.37530.95940.9378yesno
O74740CFT2_SCHPONo assigned EC number0.31590.92150.8544yesno
Q55BS1CPSF2_DICDINo assigned EC number0.33450.96880.9132yesno
O35218CPSF2_MOUSENo assigned EC number0.35950.95530.9028yesno
Q10568CPSF2_BOVINNo assigned EC number0.35740.95260.9002yesno
Q9LKF9CPSF2_ARATHNo assigned EC number0.79670.99450.9945yesno
Q652P4CPSF2_ORYSJNo assigned EC number0.73850.99450.9959yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01480064
hypothetical protein (740 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XII.1275.1
hypothetical protein (1455 aa)
   •••• 0.813
estExt_Genewise1_v1.C_LG_XVII0873
hypothetical protein (438 aa)
    ••• 0.758
eugene3.00030785
hypothetical protein (770 aa)
   • •• 0.643
gw1.XV.841.1
hypothetical protein (512 aa)
    ••• 0.587
eugene3.00170303
hypothetical protein (700 aa)
   •••••0.528
gw1.XVII.849.1
hypothetical protein (675 aa)
   •••••0.525
fgenesh4_pg.C_LG_I002796
hypothetical protein (669 aa)
    • • 0.500
eugene3.00440042
hypothetical protein (2357 aa)
   • •  0.494
eugene3.00161109
hypothetical protein (1411 aa)
    • • 0.480
gw1.XI.2829.1
hypothetical protein (707 aa)
    • • 0.459

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query739
COG1236427 COG1236, YSH1, Predicted exonuclease of the beta-l 3e-54
smart01027126 smart01027, Beta-Casp, Beta-Casp domain 4e-29
pfam13299152 pfam13299, CPSF100_C, Cleavage and polyadenylation 3e-25
pfam10996124 pfam10996, Beta-Casp, Beta-Casp domain 4e-22
COG1782637 COG1782, COG1782, Predicted metal-dependent RNase, 5e-22
TIGR03675630 TIGR03675, arCOG00543, arCOG00543 universal archae 5e-17
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase sup 2e-08
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 1e-06
pfam0752143 pfam07521, RMMBL, RNA-metabolising metallo-beta-la 4e-06
COG0491252 COG0491, GloB, Zn-dependent hydrolases, including 4e-05
COG1236427 COG1236, YSH1, Predicted exonuclease of the beta-l 0.002
COG0595555 COG0595, COG0595, mRNA degradation ribonucleases J 0.003
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  192 bits (489), Expect = 3e-54
 Identities = 101/351 (28%), Positives = 152/351 (43%), Gaps = 19/351 (5%)

Query: 20  SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79
             L+   G   L+DCG     DPS  +PL      +DAVLL+H    H+GALPY + + G
Sbjct: 16  CVLLETGGTRILLDCGLFPG-DPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLV-RNG 73

Query: 80  LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
              PV++T P   L  + +    L   +  +   ++ +D++     +  L Y +   +  
Sbjct: 74  FEGPVYATPPTAALLKV-LLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEV-- 130

Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
              G+ V  + AGH+LG     +  DG  ++Y  D  RRK++ LNG  L       VLI 
Sbjct: 131 --GGVKVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPP--CIDVLIV 186

Query: 200 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 258
           ++       P R + E  F +++   L  GG VL+P  + GR  ELLLIL +       +
Sbjct: 187 ESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--D 244

Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 318
           YPIY    ++   + Y K  +      + K  E+        + V    N         G
Sbjct: 245 YPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR------FRFVESRRNSMREGID-KG 297

Query: 319 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
           P +VLA+   L+ G S        SD KN VL       GTL R+L     
Sbjct: 298 PAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGT 348

Length = 427
>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain Back     alignment and domain information
>gnl|CDD|222032 pfam13299, CPSF100_C, Cleavage and polyadenylation factor 2 C-terminal Back     alignment and domain information
>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain Back     alignment and domain information
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|203663 pfam07521, RMMBL, RNA-metabolising metallo-beta-lactamase Back     alignment and domain information
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 739
KOG1135764 consensus mRNA cleavage and polyadenylation factor 100.0
KOG1136501 consensus Predicted cleavage and polyadenylation s 100.0
COG1782637 Predicted metal-dependent RNase, consists of a met 100.0
TIGR03675630 arCOG00543 arCOG00543 universal archaeal KH-domain 100.0
KOG1137668 consensus mRNA cleavage and polyadenylation factor 100.0
COG1236427 YSH1 Predicted exonuclease of the beta-lactamase f 100.0
TIGR00649422 MG423 conserved hypothetical protein. Contains an 100.0
KOG1138653 consensus Predicted cleavage and polyadenylation s 100.0
PF13299161 CPSF100_C: Cleavage and polyadenylation factor 2 C 100.0
COG0595555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.95
PF10996126 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T 99.92
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.71
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.66
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.64
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.58
PRK02113252 putative hydrolase; Provisional 99.56
PRK00055270 ribonuclease Z; Reviewed 99.55
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.53
PRK00685228 metal-dependent hydrolase; Provisional 99.52
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.52
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.51
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.49
PRK02126334 ribonuclease Z; Provisional 99.45
PRK04286298 hypothetical protein; Provisional 99.43
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 99.39
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 99.34
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 99.33
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.26
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 99.21
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.2
PLN02398329 hydroxyacylglutathione hydrolase 99.19
PLN02469258 hydroxyacylglutathione hydrolase 99.19
PLN02962251 hydroxyacylglutathione hydrolase 99.17
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 99.16
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 99.08
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 99.06
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 99.04
KOG1361481 consensus Predicted hydrolase involved in interstr 98.98
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 98.98
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 98.96
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 98.79
KOG0813265 consensus Glyoxylase [General function prediction 98.74
PRK11539755 ComEC family competence protein; Provisional 98.73
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.73
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 98.72
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 98.71
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 98.67
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 98.63
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 98.57
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 98.42
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 96.81
KOG0814237 consensus Glyoxylase [General function prediction 96.79
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 96.68
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 96.56
PF1369163 Lactamase_B_4: tRNase Z endonuclease 95.78
KOG4736302 consensus Uncharacterized conserved protein [Funct 95.3
KOG1137668 consensus mRNA cleavage and polyadenylation factor 94.11
KOG3592 934 consensus Microtubule-associated proteins [Cytoske 92.31
COG2015655 Alkyl sulfatase and related hydrolases [Secondary 80.84
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-150  Score=1224.02  Aligned_cols=714  Identities=48%  Similarity=0.857  Sum_probs=633.8

Q ss_pred             eEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCc
Q 004656            4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP   83 (739)
Q Consensus         4 ~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~   83 (739)
                      +++++.+.|+.++++-||+|++|+.+|||||||++.++...++++....++||||||||+.+-|+|||||++.++++++|
T Consensus         1 ~i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~   80 (764)
T KOG1135|consen    1 IIKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAP   80 (764)
T ss_pred             CeeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccce
Confidence            36788899999999999999999999999999999988888899988999999999999999999999999999999999


Q ss_pred             eeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEE
Q 004656           84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT  163 (739)
Q Consensus        84 VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~  163 (739)
                      ||||.|++.||+++|+|.++++...++|..|+.+|++.+|++|.+++|+|++.+.+++.|++|+||+|||++|++.|+|.
T Consensus        81 VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~  160 (764)
T KOG1135|consen   81 VYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKIS  160 (764)
T ss_pred             EEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEE
Confidence            99999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEecCCCCCccccCccccccCCCCCEEeccccccccCCCChhhHH-HHHHHHHHHHhcCCeEEEeccCcHHHH
Q 004656          164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL  242 (739)
Q Consensus       164 ~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~a~GR~q  242 (739)
                      ..+++|+|+.||||.+++||+|..|+.+.||.+|||++.++...+++|+.|+ .|++.|.+++++||+||||++.+||++
T Consensus       161 k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvL  240 (764)
T KOG1135|consen  161 KVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVL  240 (764)
T ss_pred             ecCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHH
Confidence            9899999999999999999999999999999999999999999889999999 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHc--CC-cccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHhccCCCC
Q 004656          243 ELLLILEDYWAEH--SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP  319 (739)
Q Consensus       243 ELl~~L~~~~~~~--~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~~~~~~p  319 (739)
                      ||+.+|+++|.+.  ++ .+||+++|+.+.++++|+++|+|||++++.+.|+.++.|||.|+|+.+|++..++.+++++|
T Consensus       241 ELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gp  320 (764)
T KOG1135|consen  241 ELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGP  320 (764)
T ss_pred             HHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCC
Confidence            9999999999987  56 69999999999999999999999999999999999999999999999999999999998889


Q ss_pred             eEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCC-CceeeecceEEecchhhHHHHHHHHHHH
Q 004656          320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYEEEQTRL  398 (739)
Q Consensus       320 ~Vilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~-~~v~~~~~~~v~l~g~EL~~y~~~~~r~  398 (739)
                      +||+||..+|++|+|+++|-.|++||+|.|+||.+.+++|++|.+...+.+ +.+.+.+.+|++|+|+||.+|++.++ +
T Consensus       321 kVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e~-~  399 (764)
T KOG1135|consen  321 KVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGER-L  399 (764)
T ss_pred             eEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhhh-h
Confidence            999999999999999999999999999999999999999999999865444 88999999999999999999999863 5


Q ss_pred             HHHHHHHhhhhhhhc---cccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccC
Q 004656          399 KKEEALKASLVKEEE---SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN  475 (739)
Q Consensus       399 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~  475 (739)
                      +.|+++.+....+.+   +.+||++||++    +..++...|..    +.+.+..++   ++||++++++++||||+|+|
T Consensus       400 r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d----~~~~~~~~Hd~----~~~~~~~~~---~~f~~~~~~~~~MFPy~e~r  468 (764)
T KOG1135|consen  400 RNEDALRLNVNRDVEIDSSHESDDSDDED----MENDTEVRHDI----MSKAGKSTK---DGFFKSAKSKHPMFPYIEER  468 (764)
T ss_pred             hhhhhHHhhccCCccccccccCCcccccc----cccccccchhh----hhccCCccc---ccccccccccCcccCCcHHh
Confidence            555554444333322   22333333332    33333333321    111222223   67899999999999999999


Q ss_pred             cccCCcCcccCCCcc-ccccccchhhhhccCCCCCCCCcc-----cccccccCCCceEEEeeeEEEEEEEEEEEeccccc
Q 004656          476 SEWDDFGEVINPDDY-IIKDEDMDQAAMHIGGDDGKLDEG-----SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRA  549 (739)
Q Consensus       476 ~~~DdYGe~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD~eg~~  549 (739)
                      +|||||||+|+|+|| +..++..+.++........++.++     +.+....+.|+||++....+.|+|+|.+||++|++
T Consensus       469 ~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGis  548 (764)
T KOG1135|consen  469 RKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGIS  548 (764)
T ss_pred             ccccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccc
Confidence            999999999999999 444444444432221111122222     12334567999999999999999999999999999


Q ss_pred             CHHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhcCC--CceeecCCCcEEEEceeeeeEEEEcchhhhhcccceecC
Q 004656          550 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC--PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG  627 (739)
Q Consensus       550 D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~--~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~~~~  627 (739)
                      |+||+++|+++++||+||||||+.+.++.|+..|....+  ++||+|+.||.|++|+++++|+|+|+|.|+++|.|++++
T Consensus       549 DgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~  628 (764)
T KOG1135|consen  549 DGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVG  628 (764)
T ss_pred             cchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhhheeeecc
Confidence            999999999999999999999999999999999987544  899999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEecc--------------------------------cCCcccccCCCC-CCCCCcceEeccccccchHHH
Q 004656          628 DYEIAWVDAEVGKT--------------------------------ENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPF  674 (739)
Q Consensus       628 ~~~va~v~g~l~~~--------------------------------~~~~~~l~p~~~-~~~~~~~~~igd~rL~~lk~~  674 (739)
                      +-+||||+|+|...                                +...++|+|+.. .+|.|++++|||+||++|||.
T Consensus       629 ~~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~~~l~l~pl~~~~~P~h~~v~igd~rLadfKq~  708 (764)
T KOG1135|consen  629 DAEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSRSKLTLLPLPGAEIPRHQAVLIGDLRLADFKQL  708 (764)
T ss_pred             cceeeeeehhhccccccccccccccceecchhhccccccccccccccccccccccCCcccCCcccceeecChhHHHHHHH
Confidence            99999999999311                                123578888765 567799999999999999999


Q ss_pred             HHhCCCceEEeC-cEEEECCeEEEEEcCCCCCCCCCCCcceEEEEcCCchhHHHHHHHHhhccccC
Q 004656          675 LSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL  739 (739)
Q Consensus       675 L~~~g~~aeF~g-G~Lv~~~~v~vrk~~~~~~~~~~~~~g~i~ieG~~~~~yy~Vr~~iy~~~~i~  739 (739)
                      |+++|++|||+| |+|+|||+|+|||+.+          |+|.|||++|++||+||+++|+|||+|
T Consensus       709 L~~kgi~aEf~ggglL~~~g~VavRk~d~----------G~i~ieG~lse~fy~iR~lvYdq~A~v  764 (764)
T KOG1135|consen  709 LTEKGIQAEFKGGGLLVCNGCVAVRKVDT----------GKITIEGCLSEDFYKIRDLVYDQLAVV  764 (764)
T ss_pred             HHhCCeEEEEecCcEEEECCEEEEEEcCC----------ceEEEeccchHHHHHHHHHHHHHhhcC
Confidence            999999999999 8999999999999977          999999999999999999999999986

>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query739
2i7t_A459 Structure Of Human Cpsf-73 Length = 459 3e-35
2i7x_A717 Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 3e-33
3af5_A651 The Crystal Structure Of An Archaeal Cpsf Subunit, 5e-22
2dkf_A431 Crystal Structure Of Ttha0252 From Thermus Thermoph 1e-17
3ie1_A431 Crystal Structure Of H380a Mutant Ttha0252 From The 2e-17
3idz_A431 Crystal Structure Of S378q Mutant Ttha0252 From The 2e-17
3iek_A431 Crystal Structure Of Native Ttha0252 From Thermus T 2e-17
3a4y_A431 Crystal Structure Of H61a Mutant Ttha0252 From Ther 2e-17
3ie0_A431 Crystal Structure Of S378y Mutant Ttha0252 From The 2e-17
3ie2_A431 Crystal Structure Of H400v Mutant Ttha0252 From The 2e-17
2xr1_A640 Dimeric Archaeal Cleavage And Polyadenylation Speci 1e-16
2ycb_A636 Structure Of The Archaeal Beta-Casp Protein With N- 7e-16
1vme_A410 Crystal Structure Of Flavoprotein (Tm0755) From The 7e-04
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73 Length = 459 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22  LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
           ++   G   ++DCG +   +     P   +   + ID +L+SH    H GALP+ +++  
Sbjct: 29  ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80  LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
                F   +T+ +YR  L      Y+    +S  D L+T  D++ +   +  +    N+
Sbjct: 89  FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
           H   +  GI    + AGH+LG  ++ I   G  ++Y  D++R++++HL    + + ++P 
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
           +LI ++    H    R++RE  F + +   +  GG  L+PV + GR  ELLLIL++YW  
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
           H    + PIY+ + ++   +   ++++  M D I K      +N F+ KH++ L +    
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
           D+   GP +V+AS   +++G S ++F  W +D +N V+       GTLA+ + ++  P+ 
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
           +     +++PL
Sbjct: 374 ITTMSGQKLPL 384
>pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 Back     alignment and structure
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 Back     alignment and structure
>pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8, A Rna Degradation Protein Of The Metallo-Beta-Lactamase Superfamily Length = 431 Back     alignment and structure
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna Length = 431 Back     alignment and structure
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 Back     alignment and structure
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity Factor With N-Terminal Kh Domains (Kh-Cpsf) From Methanosarcina Mazei Length = 640 Back     alignment and structure
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With N-Terminal Kh Domains From Methanothermobacter Thermautotrophicus Length = 636 Back     alignment and structure
>pdb|1VME|A Chain A, Crystal Structure Of Flavoprotein (Tm0755) From Thermotoga Maritima At 1.80 A Resolution Length = 410 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query739
2i7x_A717 Protein CFT2; polyadenylation, metallo-B-lactamase 1e-163
3af5_A651 Putative uncharacterized protein PH1404; archaeal 3e-52
2i7t_A459 Cleavage and polyadenylation specificity factor 73 4e-52
2i7t_A459 Cleavage and polyadenylation specificity factor 73 2e-05
2xr1_A640 Cleavage and polyadenylation specificity factor 1 2e-50
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 1e-48
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 5e-47
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 6e-07
1vme_A410 Flavoprotein; TM0755, structural genomics, JCSG, p 5e-05
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 2e-04
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Back     alignment and structure
 Score =  487 bits (1255), Expect = e-163
 Identities = 144/705 (20%), Positives = 263/705 (37%), Gaps = 127/705 (18%)

Query: 21  YLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ- 77
            +V  D    LID GWN         ++   KV   ID ++LS P    LGA        
Sbjct: 18  SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNF 77

Query: 78  ---LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYS 132
                    V++T PV  LG ++  D Y S   +  +D     L+DI+ +F  +  L YS
Sbjct: 78  TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYS 137

Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------ 186
           Q   L  + +G+ +  + AG   GG++W I+   E ++YA  +N  ++  LN        
Sbjct: 138 QLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDAT 197

Query: 187 --VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
              L + +RP+ +IT       +QP +++ ++F+D + K L + G+V++PVD +G+ L+L
Sbjct: 198 GKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDL 257

Query: 245 LLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAF 298
              + +   E +        P+  L+Y    T+ Y KS LEW+  S+ K++E  +  + F
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317

Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--- 355
            +     +I  +EL   P G K+   S         +++ ++  +  K  ++ T+     
Sbjct: 318 EIGSRIKIIAPNELSKYP-GSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFEC 373

Query: 356 ----------------QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 399
                            + T     ++      + +   +  PL  EE  A++ +    K
Sbjct: 374 ASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKK 433

Query: 400 KEEALKASLVKEEESKASLG----PDNNLSGDPMVIDANNANASADVVEPH--------- 446
           ++   K  LVK E  K + G     D N        D    N +      H         
Sbjct: 434 RDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVENVNGVPPIDHIMGGDEDDD 493

Query: 447 --------------------GGRYRDILIDGFVPPS-TSVAPMFPFYENNSEWDDFGEVI 485
                                 +  ++ +D  + PS  S   MFPF     + DD+G V+
Sbjct: 494 EEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIKKDDYGTVV 553

Query: 486 NPDDYIIKDE-----------------------------------------------DMD 498
           +   ++  D                                                   
Sbjct: 554 DFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRAS 613

Query: 499 QAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 558
           + +   G  + +  +    L +D   SK   + + VQ+KC ++ ++ +   D RS   I 
Sbjct: 614 RYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIW 673

Query: 559 SHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVT 603
             +   K+VL        E +    +K     V    + + ++ +
Sbjct: 674 PSLKSRKIVLSAPKQIQNEEITAKLIKKNIE-VVNMPLNKIVEFS 717
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Length = 284 Back     alignment and structure
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR initiative, PSI, joint center for structural genomics, ELEC transport; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 739
d2i7xa1514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 2e-77
d2i7xa1514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 3e-19
d2dkfa1431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 1e-39
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 3e-37
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 5e-05
d1vmea2250 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, 6e-06
d1wraa1305 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholi 4e-04
d2az4a1183 d.157.1.10 (A:56-238) Hypothetical protein EF2904 0.002
d1p9ea_294 d.157.1.5 (A:) Methyl parathion hydrolase {Pseudom 0.004
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  256 bits (654), Expect = 2e-77
 Identities = 100/417 (23%), Positives = 181/417 (43%), Gaps = 32/417 (7%)

Query: 21  YLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ- 77
            +V  D    LID GWN         ++   KV   ID ++LS P    LGA        
Sbjct: 18  SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNF 77

Query: 78  ---LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYS 132
                    V++T PV  LG ++  D Y S   +  +D     L+DI+ +F  +  L YS
Sbjct: 78  TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYS 137

Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------ 186
           Q   L  + +G+ +  + AG   GG++W I+   E ++YA  +N  ++  LN        
Sbjct: 138 QLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDAT 197

Query: 187 --VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
              L + +RP+ +IT       +QP +++ ++F+D + K L + G+V++PVD +G+ L+L
Sbjct: 198 GKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDL 257

Query: 245 LLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD-NAF 298
              + +   E +        P+  L+Y    T+ Y KS LEW+  S+ K++E   + + F
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317

Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--Q 356
            +     +I  +EL +   G K+   S         +++ ++  +  K  ++ T+     
Sbjct: 318 EIGSRIKIIAPNEL-SKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFEC 373

Query: 357 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
             +L ++L+             +  P  G+  +          KEE L       + 
Sbjct: 374 ASSLDKILEI----VEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNFDN 426
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Length = 294 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query739
d2i7xa1514 Cleavage factor two protein 2, CFT2 {Baker's yeast 100.0
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 100.0
d2i7ta1451 Cleavage and polyadenylation specificity factor su 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.86
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.8
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 99.73
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 99.7
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.69
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.6
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.58
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.57
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.53
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.52
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 99.49
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.48
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 99.47
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 99.39
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.36
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.33
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.32
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.31
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 99.3
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.29
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.26
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.24
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.2
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 99.18
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 99.17
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 99.07
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 99.03
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 98.51
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=660.50  Aligned_cols=489  Identities=23%  Similarity=0.390  Sum_probs=415.0

Q ss_pred             EEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCC--CCCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHH----
Q ss_conf             099999108899898199999899699992799999995--46743468989957899079983321626999986----
Q 004656            4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ----   77 (739)
Q Consensus         4 ~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~~--~~l~~l~~~~~~IdaIlLTH~H~DHiG~Lp~l~~~----   77 (739)
                      .++|++++ .++.+.+|+||+.++.+||+||||++++..  ..+..+...+++||+|||||+|.||+|+||+|+++    
T Consensus         2 ~~~~~~~~-~g~g~~sc~ll~~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~   80 (514)
T d2i7xa1           2 TYKYNCCD-DGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH   80 (514)
T ss_dssp             CEEEEECC-SSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred             EEEEEEEC-CCCCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCC
T ss_conf             28999835-99953228999989969999899986765655656655307464879998999867878517999851524


Q ss_pred             CCCCCCEEECHHHHHHHHHHCHHHHHHHCCCC--CCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCCCC
Q ss_conf             39997554240437543310178998530368--8888898879986404767179989992565797699999189989
Q 004656           78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS--EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL  155 (739)
Q Consensus        78 ~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~--~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH~l  155 (739)
                      .++++|||||.||+++++++|.|+++......  ..+.|+.+|++.+++++.+++|+|++.+.+...++++++++|||++
T Consensus        81 ~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHil  160 (514)
T d2i7xa1          81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP  160 (514)
T ss_dssp             HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred             CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEECCCCCCC
T ss_conf             68886799688999999999999999744205556678999999999974403789975982587653799971277777


Q ss_pred             CCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCC-------CCCCEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHC
Q ss_conf             974899996990799982379877556676544567-------799777405543445799921599-999999999826
Q 004656          156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF-------VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA  227 (739)
Q Consensus       156 Gs~~~~I~~~~~~IvYtgD~~~~~~~~l~~~~l~~l-------~~~d~LI~est~~~~~~~~r~~re-~l~~~I~~~l~~  227 (739)
                      ||++|.|+.++++|+|||||++.++++++++.+...       ...+.++++++|+...++++..++ .|.+.+.+++++
T Consensus       161 Gsa~~~I~~~~~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~t~~~~~~~~~~~~~~~l~~~i~~~~~~  240 (514)
T d2i7xa1         161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS  240 (514)
T ss_dssp             TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred             CCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             76699999799699997024778876477752234445544356778799986889987897377888889999999967


Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHCC----C-CCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHH-CCCCCCCCC
Q ss_conf             99499902580789999999999999749----8-63099974226899999997696319789899983-499989899
Q 004656          228 GGNVLLPVDSAGRVLELLLILEDYWAEHS----L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAFLLK  301 (739)
Q Consensus       228 gG~VLIP~~~~GR~qELl~~L~~~~~~~~----l-~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~-~~~~Pf~~~  301 (739)
                      ||+||||+|++||+|||+++|+++|+...    . ++|||++++++.+++++|+.++|||++++.+.|+. .+.+||+|+
T Consensus       241 gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~~  320 (514)
T d2i7xa1         241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIG  320 (514)
T ss_dssp             TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCT
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHCC
T ss_conf             99899997675189999999999999877635677862999776899999999986765199888887650577822036


Q ss_pred             CEEECCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEE--CCCCCCCHHHHHHCCCCCCCEEEECCE
Q ss_conf             919939977881469999099970797683318999998728999749995--589999915776419999833552234
Q 004656          302 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT--ERGQFGTLARMLQADPPPKAVKVTMSR  379 (739)
Q Consensus       302 ~~~~~~~~~e~~~~~~~p~Viias~~~L~~G~s~~~l~~~~~d~~n~Iilt--g~~~~gT~gr~L~~~~~~~~i~~~~~~  379 (739)
                      +++.+.+.+++.++ ++|||||||++|   |+++++|.+|++||+|+|+||  ||+.++|+++.+++.            
T Consensus       321 ~~~~i~~~~~l~~~-~~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~------------  384 (514)
T d2i7xa1         321 SRIKIIAPNELSKY-PGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIV------------  384 (514)
T ss_dssp             TTEEECCGGGGGGC-CSCEEEEEESCH---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHH------------
T ss_pred             CCEECCCHHHHHHC-CCCCEEEECCCC---CHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHH------------
T ss_conf             70363699999744-698389984998---56999999983699877999558876666377777654------------


Q ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             99426165999999999999999999621100000138899999899984222345566655447889851024432657
Q 004656          380 RVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFV  459 (739)
Q Consensus       380 ~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~  459 (739)
                                    .                               .                                 
T Consensus       385 --------------~-------------------------------~---------------------------------  386 (514)
T d2i7xa1         385 --------------E-------------------------------Q---------------------------------  386 (514)
T ss_dssp             --------------H-------------------------------T---------------------------------
T ss_pred             --------------H-------------------------------H---------------------------------
T ss_conf             --------------3-------------------------------2---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEE
Q ss_conf             89898789887544685557767522888542324111265301499999888563232246899269985458999789
Q 004656          460 PPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCL  539 (739)
Q Consensus       460 ~~~~~~~~mFp~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~  539 (739)
                        ......|||+...++++|+|+++...+.....++..+.            . +.......+.|+|+......+.|+|+
T Consensus       387 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~v~~~  451 (514)
T d2i7xa1         387 --DERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNF------------D-NLDYLKIDKTLSKRTISTVNVQLKCS  451 (514)
T ss_dssp             --CC--------CCCCEECCEEEEEEEEEEEESCSCCCCC------------S-CCGGGSCSSCCEEEEEEEEEEEECSE
T ss_pred             --HCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC------------C-CCCCCCCCCCCCEEECCCCEEEEEEE
T ss_conf             --20135545565642024763242034331034444676------------4-31210112443012114516889878


Q ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEC
Q ss_conf             9998346456878899985103984999955998889999999851179926646999579982
Q 004656          540 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVT  603 (739)
Q Consensus       540 i~~id~~g~~D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~i~~~  603 (739)
                      |.++|||||+|+++++.+++.++||++|||||++.+.++|++.+++. +.+|++|.+||+|+++
T Consensus       452 v~~i~~SgHad~~el~~~~~~~~P~~vvlvHGe~~~~~~~a~~l~~~-g~~v~~p~~g~~ie~~  514 (514)
T d2i7xa1         452 VVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKK-NIEVVNMPLNKIVEFS  514 (514)
T ss_dssp             EEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHT-TCEEEECCSSCCEEEC
T ss_pred             EEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHC-CCEEEECCCCCEEEEC
T ss_conf             87887661389899999999609998999389989999999999877-9869946999978629
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure